RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC35F2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042195

Ensembl transcript IDs: ENSMUST00000048670.10

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACCTTCGGTCATGGGTGTCTAAATTCCACAAGGTCCATGGACAGTaGCTGCCCCAGCAGGATGAAAACGTGAAGCTTCCAACAGAGGAA +
Preference number: 1 (lower is better)
Translates to: DLRSWVSKFHKVHGQ*LPQQDENVKLPTEE
Trigger: TTCCTCTGTTGGAAGCTTCACGTTTTCATCCTGCTGGGGCAGTCACTGTCCATGGACCTTGTGGAATTTAGACACCCATGACCGAAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CCA 90 bp ACCATACTGAGGAATTGTCACAAACCTACAAGCATTGTAAACCTGTaGGAAGAAGGAAGACACTCTCCTCTTACAGTCAGGACTCCAGAA +
Preference number: 1 (lower is better)
Translates to: TILRNCHKPTSIVNL*EEGRHSPLTVRTPE
Trigger: TTCTGGAGTCCTGACTGTAAGAGGAGAGTGTCTTCCTTCTTCCCACAGGTTTACAATGCTTGTAGGTTTGTGACAATTCCTCAGTATGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR GCA 90 bp CAAACCTACAAGCATTGTAAACCTGTGGGAAGAAGGAAGACACTCTCCTCTTACTGGTGTCGCCTCAAATaGGCCCTTGGCAGTGGCAGG +
Preference number: 2 (lower is better)
Translates to: QTYKHCKPVGRRKTLSSYWCRLK*ALGSGR
Trigger: CCTGCCACTGCCAAGGGCGCATTTGAGGCGACACCA...GTAAGAGGAGAGTGTCTTCCTTCTTCCCACAGGTTTACAATGCTTGTAGGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 90 bp CTGACGCTGACAGGTACTGGTACTCAGCACACGCGCTCACTACCCTaGGGCTCTCTGCTCTATTTTAGTATTTCTAGTTTGGAACCACTG +
Preference number: 2 (lower is better)
Translates to: LTLTGTGTQHTRSLP*GSLLYFSISSLEPL
Trigger: CAGTGGTTCCAAACTAGAAATACTAAAATAGAGCAGAGAGCCCAAGGGTAGTGAGCGCGTGTGCTGAGTACCAGTACCTGTCAGCGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR TCA 90 bp CTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTGGCTTGAGTGGGTTTCGCCTCTaGGGCTGGTGTCGCCTCAAA +
Preference number: 2 (lower is better)
Translates to: LLPCYEKLQQVNFLNCGLSGFRL*GWCRLK
Trigger: TTTGAGGCGACACCAGCCTCAGAGGCGAAACCCACT...CAAGCCACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR TCA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTTCTGCTCTCTCCTGGTaGCATGCCAGAGTCTGTGGC +
Preference number: 2 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCSALSW*HARVCG
Trigger: GCCACAGACTCTGGCATGTCACCAGGAGAGAGCAGA...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR GCA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTGGCAGTGGCAGGTTCTaGTCTCTCCTGGTGACATGC +
Preference number: 2 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCGSGRF*SLLVTC
Trigger: GCATGTCACCAGGAGAGAGCAGAACCTGCCACTGCC...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR TCA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTAAGGTCCATGGACAGTaGCTGCCCCAGCAGGATGAA +
Preference number: 2 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCKVHGQ*LPQQDE
Trigger: TTCATCCTGCTGGGGCAGTCACTGTCCATGGACCTT...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 90 bp CGCTCACTACCCTTGGGCTCTCTGCTCTATTTTAGTATTTCTAGTTaGGAACCACTGGTCAGTGCTCCTTTCTACAATCTAACCACGGAT +
Preference number: 2 (lower is better)
Translates to: RSLPLGSLLYFSISS*EPLVSAPFYNLTTD
Trigger: ATCCGTGGTTAGATTGTAGAAAGGAGCACTGACCAGTGGTTCCAAACTAGAAATACTAAAATAGAGCAGAGAGCCCAAGGGTAGTGAGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 90 bp AGGGACAAGCAAGAGGGACAAAGGGGAGAGACATGTTATAAAACATaGAGAGATATGACTGGGAGAGGGTTCCTGGATTCCTGTACTCAT +
Preference number: 2 (lower is better)
Translates to: RDKQEGQRGETCYKT*RDMTGRGFLDSCTH
Trigger: ATGAGTACAGGAATCCAGGAACCCTCTCCCAGTCATATCTCTCAATGTTTTATAACATGTCTCTCCCCTTTGTCCCTCTTGCTTGTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR GCA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTTCCATGGACAGTGACTaGCCCAGCAGGATGAAAACG +
Preference number: 2 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCSMDSD*PSRMKT
Trigger: CGTTTTCATCCTGCTGGGGCAGTCACTGTCCATGGA...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR CCA 90 bp TTAGCAGTGCGTCTTCCTTTTAACAATAATGCATTTTTCCAACCAGAGATAGCACCTCAAATGCGCCCTTaGCAGTGGCAGGTTCTGCTC +
Preference number: 2 (lower is better)
Translates to: LAVRLPFNNNAFFQPEIAPQMRP*QWQVLL
Trigger: GAGCAGAACCTGCCACTGCCAAGGGCGCATTTGAGG...TGCTATCTCTGGTTGGAAAAATGCATTATTGTTAAAAGGAAGACGCACTGCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR CCA 90 bp CAAACCTACAAGCATTGTAAACCTGTGGGAAGAAGGAAGACACTCTCCTCTTACCTAGTTTGGAACCACTaGTCAGTGCTCCTTTCTACA +
Preference number: 2 (lower is better)
Translates to: QTYKHCKPVGRRKTLSSYLVWNH*SVLLST
Trigger: TGTAGAAAGGAGCACTGACCAGTGGTTCCAAACTAG...GTAAGAGGAGAGTGTCTTCCTTCTTCCCACAGGTTTACAATGCTTGTAGGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR TCA 90 bp ACCATACTGAGGAATTGTCACAAACCTACAAGCATTGTAAACCTGTGGGAAGAACTACCTAAACAGCCCTaGAGCCCTTCTCTTCTTACA +
Preference number: 2 (lower is better)
Translates to: TILRNCHKPTSIVNLWEELPKQP*SPSLLT
Trigger: TGTAAGAAGAGAAGGGCTTCAGGGCTGTTTAGGTAG...TTCTTCCCACAGGTTTACAATGCTTGTAGGTTTGTGACAATTCCTCAGTATGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR TCA 90 bp CTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTGGCTTGAGCAGGATGAAAACGTaGAGCTTCCAACAGAGGAAT +
Preference number: 2 (lower is better)
Translates to: LLPCYEKLQQVNFLNCGLSRMKT*SFQQRN
Trigger: ATTCCTCTGTTGGAAGCTTCACGTTTTCATCCTGCT...CAAGCCACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR GCA 90 bp CTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTGGCTTGGGAACCACTGGTCAGTaGTCCTTTCTACAATCTAAC +
Preference number: 2 (lower is better)
Translates to: LLPCYEKLQQVNFLNCGLGTTGQ*SFLQSN
Trigger: GTTAGATTGTAGAAAGGAGCACTGACCAGTGGTTCC...CAAGCCACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR GCA 90 bp TTCTTACATGTGTCTCTGAAACCTGACGCTGACAGGTACTGGTACTCAGCACACTACCCTTGGGCTCTCTaGTCTATTTTAGTATTTCTA +
Preference number: 2 (lower is better)
Translates to: FLHVSLKPDADRYWYSAHYPWAL*SILVFL
Trigger: TAGAAATACTAAAATAGAGCAGAGAGCCCAAGGGTA...GTGTGCTGAGTACCAGTACCTGTCAGCGTCAGGTTTCAGAGACACATGTAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR CCA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTCGTCACAGTTTATCTTaGGAGTTCTCAAGTGCTGCC +
Preference number: 2 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCRHSLS*EFSSAA
Trigger: GGCAGCACTTGAGAACTCCCAAGATAAACTGTGACG...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR CCA 90 bp CAAACCTACAAGCATTGTAAACCTGTGGGAAGAAGGAAGACACTCTCCTCTTACTTAGTATTTCTAGTTTaGAACCACTGGTCAGTGCTC +
Preference number: 2 (lower is better)
Translates to: QTYKHCKPVGRRKTLSSYLVFLV*NHWSVL
Trigger: GAGCACTGACCAGTGGTTCCAAACTAGAAATACTAA...GTAAGAGGAGAGTGTCTTCCTTCTTCCCACAGGTTTACAATGCTTGTAGGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR CCA 90 bp TTAGCAGTGCGTCTTCCTTTTAACAATAATGCATTTTTCCAACCAGAGATAGCACGCGCTCACTACCCTTaGGCTCTCTGCTCTATTTTA +
Preference number: 2 (lower is better)
Translates to: LAVRLPFNNNAFFQPEIARAHYP*ALCSIL
Trigger: TAAAATAGAGCAGAGAGCCCAAGGGTAGTGAGCGCG...TGCTATCTCTGGTTGGAAAAATGCATTATTGTTAAAAGGAAGACGCACTGCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CCA 72 bp TCGCCTCTGAGGCTGGTGTCGCCTCAAATGCGCCCTTaGCAGTGGCAGGTTCTGCTCTCTCCTGGTGACATG +
Preference number: 3 (lower is better)
Translates to: SPLRLVSPQMRP*QWQVLLSPGDM
Trigger: CATGTCACCAGGAGAGAGCAGAACCTGCCACTGCCAAGGGCGCATTTGAGGCGACACCAGCCTCAGAGGCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR GCA 72 bp TGTCGCCTCAAATGCGCCCTTGGCAGTGGCAGGTTCTaGTCTCTCCTGGTGACATGCCAGAGTCTGTGGCTT +
Preference number: 3 (lower is better)
Translates to: CRLKCALGSGRF*SLLVTCQSLWL
Trigger: AAGCCACAGACTCTGGCATGTCACCAGGAGAGAGCAGAACCTGCCACTGCCAAGGGCGCATTTGAGGCGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR GCA 72 bp AAGTCGTCACAGTTTATCTTGGGAGTTCTCAAGTGCTaGCCCGCCCATTTTTCCCACCACCTGCCACCAGGG +
Preference number: 3 (lower is better)
Translates to: KSSQFILGVLKC*PAHFSHHLPPG
Trigger: CCCTGGTGGCAGGTGGTGGGAAAAATGGGCGGGGCAGCACTTGAGAACTCCCAAGATAAACTGTGACGACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CCA 72 bp TTACATGTGTCTCTGAAACCTGACGCTGACAGGTACTaGTACTCAGCACACGCGCTCACTACCCTTGGGCTC +
Preference number: 3 (lower is better)
Translates to: LHVSLKPDADRY*YSAHALTTLGL
Trigger: GAGCCCAAGGGTAGTGAGCGCGTGTGCTGAGTACCAGTACCTGTCAGCGTCAGGTTTCAGAGACACATGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR TCA 72 bp ACAGCCCTGAAGCCCTTCTCTTCTTACATGTGTCTCTaGAACCTGACGCTGACAGGTACTGGTACTCAGCAC +
Preference number: 3 (lower is better)
Translates to: TALKPFSSYMCL*NLTLTGTGTQH
Trigger: GTGCTGAGTACCAGTACCTGTCAGCGTCAGGTTTCAGAGACACATGTAAGAAGAGAAGGGCTTCAGGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR TCA 72 bp TCATGGGTGTCTAAATTCCACAAGGTCCATGGACAGTaGCTGCCCCAGCAGGATGAAAACGTGAAGCTTCCA +
Preference number: 3 (lower is better)
Translates to: SWVSKFHKVHGQ*LPQQDENVKLP
Trigger: TGGAAGCTTCACGTTTTCATCCTGCTGGGGCAGTCACTGTCCATGGACCTTGTGGAATTTAGACACCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR TCA 72 bp GCACTGAATGGGAGGGATGCCCAATATAACAGGCTTTaGGAGCAGTTTGCTCCAGAACTCAGAACACAGGAG +
Preference number: 3 (lower is better)
Translates to: ALNGRDAQYNRL*EQFAPELRTQE
Trigger: CTCCTGTGTTCTGAGTTCTGGAGCAAACTGCTCTCAAAGCCTGTTATATTGGGCATCCCTCCCATTCAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR TCA 72 bp TCCATGGACAGTGACTGCCCCAGCAGGATGAAAACGTaGAGCTTCCAACAGAGGAATCTTATTGCACCAACA +
Preference number: 3 (lower is better)
Translates to: SMDSDCPSRMKT*SFQQRNLIAPT
Trigger: TGTTGGTGCAATAAGATTCCTCTGTTGGAAGCTTCACGTTTTCATCCTGCTGGGGCAGTCACTGTCCATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR GCA 72 bp GTACTCAGCACACGCGCTCACTACCCTTGGGCTCTCTaGTCTATTTTAGTATTTCTAGTTTGGAACCACTGG +
Preference number: 3 (lower is better)
Translates to: VLSTRAHYPWAL*SILVFLVWNHW
Trigger: CCAGTGGTTCCAAACTAGAAATACTAAAATAGAGCAGAGAGCCCAAGGGTAGTGAGCGCGTGTGCTGAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CCA 72 bp CAGGTACTGGTACTCAGCACACGCGCTCACTACCCTTaGGCTCTCTGCTCTATTTTAGTATTTCTAGTTTGG +
Preference number: 3 (lower is better)
Translates to: QVLVLSTRAHYP*ALCSILVFLVW
Trigger: CCAAACTAGAAATACTAAAATAGAGCAGAGAGCCCAAGGGTAGTGAGCGCGTGTGCTGAGTACCAGTACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CCA 72 bp CTCATTAGCTGCTTTCAAAGTCGTCACAGTTTATCTTaGGAGTTCTCAAGTGCTGCCCCGCCCATTTTTCCC +
Preference number: 3 (lower is better)
Translates to: LISCFQSRHSLS*EFSSAAPPIFP
Trigger: GGGAAAAATGGGCGGGGCAGCACTTGAGAACTCCCAAGATAAACTGTGACGACTTTGAAAGCAGCTAATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR GCA 72 bp CTGGGAGAGGGTTCCTGGATTCCTGTACTCATTAGCTaGTTTCAAAGTCGTCACAGTTTATCTTGGGAGTTC +
Preference number: 3 (lower is better)
Translates to: LGEGSWIPVLIS*FQSRHSLSWEF
Trigger: GAACTCCCAAGATAAACTGTGACGACTTTGAAAGCAGCTAATGAGTACAGGAATCCAGGAACCCTCTCCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR GCA 72 bp TTCCAACCAGAGATAGCAGCCAAGTTCTCAAGCTCTTaGCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTC +
Preference number: 3 (lower is better)
Translates to: FQPEIAAKFSSS*LAMRSCSRLIF
Trigger: GAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAGAACTTGGCTGCTATCTCTGGTTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CCA 72 bp AGGAATTGTCACAAACCTACAAGCATTGTAAACCTGTaGGAAGAAGGAAGACACTCTCCTCTTACAGTCAGG +
Preference number: 3 (lower is better)
Translates to: RNCHKPTSIVNL*EEGRHSPLTVR
Trigger: CCTGACTGTAAGAGGAGAGTGTCTTCCTTCTTCCCACAGGTTTACAATGCTTGTAGGTTTGTGACAATTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR GCA 72 bp ACCAGAGATAGCAGCCAAGTTCTCAAGCTCTTGCCTTaGTATGAGAAGTTGCAGCAGGTTAATTTTCTAAAC +
Preference number: 3 (lower is better)
Translates to: TRDSSQVLKLLP*YEKLQQVNFLN
Trigger: GTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAGAACTTGGCTGCTATCTCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR-3UTR CAA 90 bp TTAGCAGTGCGTCTTCCTTTTAACAATAATGCATTTTTCCAACCAGAGATAGCATTTAGTATTTCTAGTTaGGAACCACTGGTCAGTGCT +
Preference number: 3 (lower is better)
Translates to: LAVRLPFNNNAFFQPEIAFSISS*EPLVSA
Trigger: AGCACTGACCAGTGGTTCCAAACTAGAAATACTAAA...TGCTATCTCTGGTTGGAAAAATGCATTATTGTTAAAAGGAAGACGCACTGCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp GTGCTGCCCCGCCCATTTTTCCCACCACCTGCCACCAGGGACCTTCGGTCATGGTTTTCTGCCAAATACTaGCTGGTGATGGCCGTGCCG +
Preference number: 4 (lower is better)
Translates to: VLPRPFFPPPATRDLRSWFSAKY*LVMAVP
Trigger: CGGCACGGCCATCACCAGCCAGTATTTGGCAGAAAA...CCATGACCGAAGGTCCCTGGTGGCAGGTGGTGGGAAAAATGGGCGGGGCAGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 72 bp GGAGGGATGCCCAATATAACAGGCTTTGAGAGCAGTTaGCTCCAGAACTCAGAACACAGGAGCAAACGTGCC +
Preference number: 4 (lower is better)
Translates to: GGMPNITGFESS*LQNSEHRSKRA
Trigger: GGCACGTTTGCTCCTGTGTTCTGAGTTCTGGAGCAAACTGCTCTCAAAGCCTGTTATATTGGGCATCCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR TCA 90 bp TTCTTACATGTGTCTCTGAAACCTGACGCTGACAGGTACTGGTACTCAGCACACGATGCCCAGGTTGACTaGAGTGGCACTCGTGACTTT +
Preference number: 4 (lower is better)
Translates to: FLHVSLKPDADRYWYSAHDAQVD*SGTRDF
Trigger: AAAGTCACGAGTGCCACTTCAGTCAACCTGGGCATC...GTGTGCTGAGTACCAGTACCTGTCAGCGTCAGGTTTCAGAGACACATGTAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp ACTCCTAACTACCTAAACAGCCCTGAAGCCCTTCTCTTCTTACATGTGTCTCTGTGTCTGCACCAACCATaGTCCCTACACCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: TPNYLNSPEALLFLHVSLCLHQP*SLHPAD
Trigger: GTCTGCTGGGTGTAGGGACCATGGTTGGTGCAGACA...CAGAGACACATGTAAGAAGAGAAGGGCTTCAGGGCTGTTTAGGTAGTTAGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR TCA 90 bp GAGACATGTTATAAAACATTGAGAGATATGACTGGGAGAGGGTTCCTGGATTCCCCAAATACTGGCTGGTaGTGGCCGTGCCGCAAATAC +
Preference number: 4 (lower is better)
Translates to: ETCYKTLRDMTGRGFLDSPNTGW*WPCRKY
Trigger: GTATTTGCGGCACGGCCATCACCAGCCAGTATTTGG...GGAATCCAGGAACCCTCTCCCAGTCATATCTCTCAATGTTTTATAACATGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR TCA 90 bp ACTCCTAACTACCTAAACAGCCCTGAAGCCCTTCTCTTCTTACATGTGTCTCTGTTATCACTGCCTGACTaGAACGCCAGCATCAACGTG +
Preference number: 4 (lower is better)
Translates to: TPNYLNSPEALLFLHVSLLSLPD*NASINV
Trigger: CACGTTGATGCTGGCGTTTCAGTCAGGCAGTGATAA...CAGAGACACATGTAAGAAGAGAAGGGCTTCAGGGCTGTTTAGGTAGTTAGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR TCA 90 bp CAGTGCTCCTTTCTACAATCTAACCACGGATGTAATCCAATGCAGTGGGTTTCGGAGGTTATCACTGCCTaGCTGAAACGCCAGCATCAA +
Preference number: 4 (lower is better)
Translates to: QCSFLQSNHGCNPMQWVSEVITA*LKRQHQ
Trigger: TTGATGCTGGCGTTTCAGTCAGGCAGTGATAACCTC...CGAAACCCACTGCATTGGATTACATCCGTGGTTAGATTGTAGAAAGGAGCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp CTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTGGCTTGTACAAGACTGCAGAGTaGGTCTCCGGGAGACCACTC +
Preference number: 4 (lower is better)
Translates to: LLPCYEKLQQVNFLNCGLYKTAE*VSGRPL
Trigger: GAGTGGTCTCCCGGAGACCCACTCTGCAGTCTTGTA...CAAGCCACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp CAGTGCTCCTTTCTACAATCTAACCACGGATGTAATCCAATGCAGTGGGTTTCGTCTGGCCCAGAGCTATaGTCTTCAAAATATCCCAGG +
Preference number: 4 (lower is better)
Translates to: QCSFLQSNHGCNPMQWVSSGPEL*SSKYPR
Trigger: CCTGGGATATTTTGAAGACCATAGCTCTGGGCCAGA...CGAAACCCACTGCATTGGATTACATCCGTGGTTAGATTGTAGAAAGGAGCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 72 bp ACAGGTACTGGTACTCAGCACACGCGCTCACTACCCTaGGGCTCTCTGCTCTATTTTAGTATTTCTAGTTTG +
Preference number: 4 (lower is better)
Translates to: TGTGTQHTRSLP*GSLLYFSISSL
Trigger: CAAACTAGAAATACTAAAATAGAGCAGAGAGCCCAAGGGTAGTGAGCGCGTGTGCTGAGTACCAGTACCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp CAAGTTCTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTACACAAGGACAGCATCTaGCCCAGAGCTATGGTCTTC +
Preference number: 4 (lower is better)
Translates to: QVLKLLPCYEKLQQVNFLHKDSI*PRAMVF
Trigger: GAAGACCATAGCTCTGGGCCAGATGCTGTCCTTGTG...TAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAGAACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 72 bp AGCCAAGTTCTCAAGCTCTTGCCTTGCTATGAGAAGTaGCAGCAGGTTAATTTTCTAAACTGTGGCTTGGTG +
Preference number: 4 (lower is better)
Translates to: SQVLKLLPCYEK*QQVNFLNCGLV
Trigger: CACCAAGCCACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAGAACTTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR TCA 90 bp ACAATTTACATAAAGTTTTCTGAAGGCGGCACTCTGGTGGCTGATGTTATGCTATCAAAATATCCCAGGTaGAGAGTTTGCGTCGGATCC +
Preference number: 4 (lower is better)
Translates to: TIYIKFSEGGTLVADVMLSKYPR*RVCVGS
Trigger: GGATCCGACGCAAACTCTTCACCTGGGATATTTTGA...TAGCATAACATCAGCCACCAGAGTGCCGCCTTCAGAAAACTTTATGTAAATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 72 bp CCCTTGGGCTCTCTGCTCTATTTTAGTATTTCTAGTTaGGAACCACTGGTCAGTGCTCCTTTCTACAATCTA +
Preference number: 4 (lower is better)
Translates to: PLGSLLYFSISS*EPLVSAPFYNL
Trigger: TAGATTGTAGAAAGGAGCACTGACCAGTGGTTCCAAACTAGAAATACTAAAATAGAGCAGAGAGCCCAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
3UTR CAA 72 bp TTTCCAACCAGAGATAGCAGCCAAGTTCTCAAGCTCTaGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTT +
Preference number: 4 (lower is better)
Translates to: FPTRDSSQVLKL*PCYEKLQQVNF
Trigger: AAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAGAACTTGGCTGCTATCTCTGGTTGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR TCA 90 bp CAAACCTACAAGCATTGTAAACCTGTGGGAAGAAGGAAGACACTCTCCTCTTACAGACAAACACAGCAATaGAGTGGATCACTTTGTATC +
Preference number: 4 (lower is better)
Translates to: QTYKHCKPVGRRKTLSSYRQTQQ*SGSLCI
Trigger: GATACAAAGTGATCCACTTCATTGCTGTGTTTGTCT...GTAAGAGGAGAGTGTCTTCCTTCTTCCCACAGGTTTACAATGCTTGTAGGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTGACTTTAATCACCAATaGCATGAAGCTGTACAGGCA +
Preference number: 4 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCDFNHQ*HEAVQA
Trigger: TGCCTGTACAGCTTCATGCCATTGGTGATTAAAGTC...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CCA 90 bp ACAATTTACATAAAGTTTTCTGAAGGCGGCACTCTGGTGGCTGATGTTATGCTAAACACAGCAATGAAGTaGATCACTTTGTATCTTGCC +
Preference number: 4 (lower is better)
Translates to: TIYIKFSEGGTLVADVMLNTAMK*ITLYLA
Trigger: GGCAAGATACAAAGTGATCCACTTCATTGCTGTGTT...TAGCATAACATCAGCCACCAGAGTGCCGCCTTCAGAAAACTTTATGTAAATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR GCA 90 bp TTAGCAGTGCGTCTTCCTTTTAACAATAATGCATTTTTCCAACCAGAGATAGCAAGTCGTGTACTGGTATaGTCTGACAATCAGATAATT +
Preference number: 4 (lower is better)
Translates to: LAVRLPFNNNAFFQPEIASRVLV*SDNQII
Trigger: AATTATCTGATTGTCAGAGCATACCAGTACACGACT...TGCTATCTCTGGTTGGAAAAATGCATTATTGTTAAAAGGAAGACGCACTGCTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 90 bp TTCAAAATATCCCAGGTGAAGAGTTTGCGTCGGATCCTGCTCAGCTaGCTGCCGATACTGTCCACCGTACCCAGCGCCCGGGGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: FKISQVKSLRRILLS*LPILSTVPSARGSL
Trigger: CAGCGAGCCCCGGGCGCTGGGTACGGTGGACAGTATCGGCAGCCAGCTGAGCAGGATCCGACGCAAACTCTTCACCTGGGATATTTTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 90 bp GGTAACAGGGGGCACGCTGCTTTCTGGGGGCTCTACCGTGCGCGTTaGGGTGGAACAGTACAAGATGAAGCCAACCATGATGACTGTGAA +
Preference number: 5 (lower is better)
Translates to: GNRGHAAFWGLYRAR*GGTVQDEANHDDCE
Trigger: TTCACAGTCATCATGGTTGGCTTCATCTTGTACTGTTCCACCCCAACGCGCACGGTAGAGCCCCCAGAAAGCAGCGTGCCCCCTGTTACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS TCA 90 bp GCATGGGCGTGTTCACTCTGTACTTTTCTGCCAAATACTGGCTGGTaGTGGCCGTGCCGCAAATACACAAGGACAGCATCTGGCCCAGAG +
Preference number: 5 (lower is better)
Translates to: AWACSLCTFLPNTGW*WPCRKYTRTASGPE
Trigger: CTCTGGGCCAGATGCTGTCCTTGTGTATTTGCGGCACGGCCATCACCAGCCAGTATTTGGCAGAAAAGTACAGAGTGAACACGCCCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 90 bp CTCTGCAGCATGGGCGTGTTCACTCTGTACTTTTCTGCCAAATACTaGCTGGTGATGGCCGTGCCGCAAATACACAAGGACAGCATCTGG +
Preference number: 5 (lower is better)
Translates to: LCSMGVFTLYFSAKY*LVMAVPQIHKDSIW
Trigger: CCAGATGCTGTCCTTGTGTATTTGCGGCACGGCCATCACCAGCCAGTATTTGGCAGAAAAGTACAGAGTGAACACGCCCATGCTGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CAA 90 bp ATGCGCCCTTGGCAGTGGCAGGTTCTGCTCTCTCCTGGTGACATGCCAGAGTCTATGAAGTGGATCACTTaGTATCTTGCCCGGAGAATA +
Preference number: 5 (lower is better)
Translates to: MRPWQWQVLLSPGDMPESMKWIT*YLARRI
Trigger: TATTCTCCGGGCAAGATACAAAGTGATCCACTTCAT...AGACTCTGGCATGTCACCAGGAGAGAGCAGAACCTGCCACTGCCAAGGGCGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 90 bp TACTGGCTGGTGATGGCCGTGCCGCAAATACACAAGGACAGCATCTaGCCCAGAGCTATGGTCTTCAAAATATCCCAGGTGAAGAGTTTG +
Preference number: 5 (lower is better)
Translates to: YWLVMAVPQIHKDSI*PRAMVFKISQVKSL
Trigger: CAAACTCTTCACCTGGGATATTTTGAAGACCATAGCTCTGGGCCAGATGCTGTCCTTGTGTATTTGCGGCACGGCCATCACCAGCCAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 90 bp ACCATGGTCCCTACACCCAGCAGACAGACAAACACAGCAATGAAGTaGATCACTTTGTATCTTGCCCGGAGAATAAACCAGGAGAGAGCC +
Preference number: 5 (lower is better)
Translates to: TMVPTPSRQTNTAMK*ITLYLARRINQERA
Trigger: GGCTCTCTCCTGGTTTATTCTCCGGGCAAGATACAAAGTGATCCACTTCATTGCTGTGTTTGTCTGTCTGCTGGGTGTAGGGACCATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS GCA 90 bp ATTGATGAAACTCTGCAGCATGGGCGTGTTCACTCTGTACTTTTCTaGCAAATACTGGCTGGTGATGGCCGTGCCGCAAATACACAAGGA +
Preference number: 5 (lower is better)
Translates to: IDETLQHGRVHSVLF*QILAGDGRAANTQG
Trigger: TCCTTGTGTATTTGCGGCACGGCCATCACCAGCCAGTATTTGGCAGAAAAGTACAGAGTGAACACGCCCATGCTGCAGAGTTTCATCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CAA 90 bp GAGACATGTTATAAAACATTGAGAGATATGACTGGGAGAGGGTTCCTGGATTCCGCTCTACCGTGCGCGTaGGGGTGGAACAGTACAAGA +
Preference number: 5 (lower is better)
Translates to: ETCYKTLRDMTGRGFLDSALPCA*GWNSTR
Trigger: TCTTGTACTGTTCCACCCCAACGCGCACGGTAGAGC...GGAATCCAGGAACCCTCTCCCAGTCATATCTCTCAATGTTTTATAACATGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS GCA 90 bp CAGCAGACAGACAAACACAGCAATGAAGTGGATCACTTTGTATCTTaGCCGGAGAATAAACCAGGAGAGAGCCATCAACACAGGAATCCC +
Preference number: 5 (lower is better)
Translates to: QQTDKHSNEVDHFVS*PENKPGESHQHRNP
Trigger: GGGATTCCTGTGTTGATGGCTCTCTCCTGGTTTATTCTCCGGGCAAGATACAAAGTGATCCACTTCATTGCTGTGTTTGTCTGTCTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CAA 90 bp CTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAAACTGTTCCCAGGTGAAGAGTTaGCGTCGGATCCTGCTCAGC +
Preference number: 5 (lower is better)
Translates to: LKLLPCYEKLQQVNFLNCSQVKS*RRILLS
Trigger: GCTGAGCAGGATCCGACGCAAACTCTTCACCTGGGA...ACAGTTTAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS-3UTR CAA 90 bp CAAGTTCTCAAGCTCTTGCCTTGCTATGAGAAGTTGCAGCAGGTTAATTTTCTAGTCAGGATGCCCAGGTaGACTGAAGTGGCACTCGTG +
Preference number: 5 (lower is better)
Translates to: QVLKLLPCYEKLQQVNFLVRMPR*TEVALV
Trigger: CACGAGTGCCACTTCAGTCAACCTGGGCATCCTGAC...TAGAAAATTAACCTGCTGCAACTTCTCATAGCAAGGCAAGAGCTTGAGAACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS TCA 90 bp CTTCCACCATTTTCTTCTCAAAATCTCCAGGAGGTTATCACTGCCTaGCTGAAACGCCAGCATCAACGTGTAAACCAGGAAGAGCAAGCA +
Preference number: 5 (lower is better)
Translates to: LPPFSSQNLQEVITA*LKRQHQRVNQEEQA
Trigger: TGCTTGCTCTTCCTGGTTTACACGTTGATGCTGGCGTTTCAGTCAGGCAGTGATAACCTCCTGGAGATTTTGAGAAGAAAATGGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS TCA 90 bp AAAGAAAAGGCTGTAAAGGTCAGCTGTCAGGATGCCCAGGTTGACTaGAGTGGCACTCGTGACTTTAATCACCAATGGCATGAAGCTGTA +
Preference number: 5 (lower is better)
Translates to: KEKAVKVSCQDAQVD*SGTRDFNHQWHEAV
Trigger: TACAGCTTCATGCCATTGGTGATTAAAGTCACGAGTGCCACTTCAGTCAACCTGGGCATCCTGACAGCTGACCTTTACAGCCTTTTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 72 bp TCCCAGGTGAAGAGTTTGCGTCGGATCCTGCTCAGCTaGCTGCCGATACTGTCCACCGTACCCAGCGCCCGG +
Preference number: 6 (lower is better)
Translates to: SQVKSLRRILLS*LPILSTVPSAR
Trigger: CCGGGCGCTGGGTACGGTGGACAGTATCGGCAGCCAGCTGAGCAGGATCCGACGCAAACTCTTCACCTGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 72 bp GGGCACGCTGCTTTCTGGGGGCTCTACCGTGCGCGTTaGGGTGGAACAGTACAAGATGAAGCCAACCATGAT +
Preference number: 6 (lower is better)
Translates to: GHAAFWGLYRAR*GGTVQDEANHD
Trigger: ATCATGGTTGGCTTCATCTTGTACTGTTCCACCCCAACGCGCACGGTAGAGCCCCCAGAAAGCAGCGTGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CAA 90 bp ATCTGGCCCAGAGCTATGGTCTTCAAAATATCCCAGGTGAAGAGTTaGCGTCGGATCCTGCTCAGCTGGCTGCCGATACTGTCCACCGTA +
Preference number: 6 (lower is better)
Translates to: IWPRAMVFKISQVKS*RRILLSWLPILSTV
Trigger: TACGGTGGACAGTATCGGCAGCCAGCTGAGCAGGATCCGACGCAAACTCTTCACCTGGGATATTTTGAAGACCATAGCTCTGGGCCAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 72 bp GTGATGGCCGTGCCGCAAATACACAAGGACAGCATCTaGCCCAGAGCTATGGTCTTCAAAATATCCCAGGTG +
Preference number: 6 (lower is better)
Translates to: VMAVPQIHKDSI*PRAMVFKISQV
Trigger: CACCTGGGATATTTTGAAGACCATAGCTCTGGGCCAGATGCTGTCCTTGTGTATTTGCGGCACGGCCATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CAA 72 bp AGAGCTATGGTCTTCAAAATATCCCAGGTGAAGAGTTaGCGTCGGATCCTGCTCAGCTGGCTGCCGATACTG +
Preference number: 6 (lower is better)
Translates to: RAMVFKISQVKS*RRILLSWLPIL
Trigger: CAGTATCGGCAGCCAGCTGAGCAGGATCCGACGCAAACTCTTCACCTGGGATATTTTGAAGACCATAGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS TCA 72 bp GCTGTAAAGGTCAGCTGTCAGGATGCCCAGGTTGACTaGAGTGGCACTCGTGACTTTAATCACCAATGGCAT +
Preference number: 6 (lower is better)
Translates to: AVKVSCQDAQVD*SGTRDFNHQWH
Trigger: ATGCCATTGGTGATTAAAGTCACGAGTGCCACTTCAGTCAACCTGGGCATCCTGACAGCTGACCTTTACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS TCA 72 bp TGTTCACTCTGTACTTTTCTGCCAAATACTGGCTGGTaGTGGCCGTGCCGCAAATACACAAGGACAGCATCT +
Preference number: 6 (lower is better)
Translates to: CSLCTFLPNTGW*WPCRKYTRTAS
Trigger: AGATGCTGTCCTTGTGTATTTGCGGCACGGCCATCACCAGCCAGTATTTGGCAGAAAAGTACAGAGTGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CAA 90 bp CCTACACCCAGCAGACAGACAAACACAGCAATGAAGTGGATCACTTaGTATCTTGCCCGGAGAATAAACCAGGAGAGAGCCATCAACACA +
Preference number: 6 (lower is better)
Translates to: PTPSRQTNTAMKWIT*YLARRINQERAINT
Trigger: TGTGTTGATGGCTCTCTCCTGGTTTATTCTCCGGGCAAGATACAAAGTGATCCACTTCATTGCTGTGTTTGTCTGTCTGCTGGGTGTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CCA 72 bp CCTACACCCAGCAGACAGACAAACACAGCAATGAAGTaGATCACTTTGTATCTTGCCCGGAGAATAAACCAG +
Preference number: 6 (lower is better)
Translates to: PTPSRQTNTAMK*ITLYLARRINQ
Trigger: CTGGTTTATTCTCCGGGCAAGATACAAAGTGATCCACTTCATTGCTGTGTTTGTCTGTCTGCTGGGTGTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS CAA 72 bp AGCAGACAGACAAACACAGCAATGAAGTGGATCACTTaGTATCTTGCCCGGAGAATAAACCAGGAGAGAGCC +
Preference number: 6 (lower is better)
Translates to: SRQTNTAMKWIT*YLARRINQERA
Trigger: GGCTCTCTCCTGGTTTATTCTCCGGGCAAGATACAAAGTGATCCACTTCATTGCTGTGTTTGTCTGTCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS GCA 72 bp ACCATTTTCTTCTCAAAATCTCCAGGAGGTTATCACTaGCTGACTGAAACGCCAGCATCAACGTGTAAACCA +
Preference number: 6 (lower is better)
Translates to: TIFFSKSPGGYH*LTETPASTCKP
Trigger: TGGTTTACACGTTGATGCTGGCGTTTCAGTCAGGCAGTGATAACCTCCTGGAGATTTTGAGAAGAAAATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10
CDS TCA 72 bp AATGCCACAAATAACAGGGCAATTTTCCAGTCCCACTaGATCCGGGCAATGTCTTTATATTCCACAATCAAT +
Preference number: 6 (lower is better)
Translates to: NATNNRAIFQSH*IRAMSLYSTIN
Trigger: ATTGATTGTGGAATATAAAGACATTGCCCGGATTCAGTGGGACTGGAAAATTGCCCTGTTATTTGTGGCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048670.10