RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC35B3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021432

Ensembl transcript IDs: ENSMUST00000021870.12, ENSMUST00000167513.3, ENSMUST00000224429.2, ENSMUST00000224645.2, ENSMUST00000225331.2, ENSMUST00000225396.2, ENSMUST00000225432.2, ENSMUST00000225461.2, ENSMUST00000225568.2, ENSMUST00000225714.2

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGTTGATGGATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATaGAGCCCCAGGCTGGTCACATATGCTGTGGGTTGCCCTGCATCC +
Preference number: 1 (lower is better)
Translates to: QLMDAQGGSINFLQG*SPRLVTYAVGCPAS
Trigger: GGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATCCATCAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR GCA 90 bp AGAGGCCCTGGAGGAACATGGCTTACCTGTTTTATCTTTCTGGCCTaGGTAGGTAGCTTTCGCATAGACCCCAGGAGCACCTGCCCAGGG +
Preference number: 1 (lower is better)
Translates to: RGPGGTWLTCFIFLA*VGSFRIDPRSTCPG
Trigger: CCCTGGGCAGGTGCTCCTGGGGTCTATGCGAAAGCTACCTACGCAGGCCAGAAAGATAAAACAGGTAAGCCATGTTCCTCCAGGGCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 90 bp AGCATCAAGAAGCCTCACCTAGCGAAGGTACTGGCAGTTGATGGATaGCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAG +
Preference number: 1 (lower is better)
Translates to: SIKKPHLAKVLAVDG*PGREHQFSSGMQPQ
Trigger: CTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATCCATCAACTGCCAGTACCTTCGCTAGGTGAGGCTTCTTGATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CCA 90 bp ACTCTGTCACATTGGTGCTCACACCCCACTAACAGTCAGCCACACTaGTGTGTACCCTTCACCCAGTCAGTCACTCTGCGTCCGTCATAC +
Preference number: 1 (lower is better)
Translates to: TLSHWCSHPTNSQPH*CVPFTQSVTLRPSY
Trigger: GTATGACGGACGCAGAGTGACTGACTGGGTGAAGGGTACACACCAGTGTGGCTGACTGTTAGTGGGGTGTGAGCACCAATGTGACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 90 bp TTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATATGCTGTGGGTTaGCCTGCATCCACTCACAGACTAGCAGCACCAATTAGACTCAGT +
Preference number: 1 (lower is better)
Translates to: FLQGCSPRLVTYAVG*PASTHRLAAPIRLS
Trigger: ACTGAGTCTAATTGGTGCTGCTAGTCTGTGAGTGGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 90 bp GAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATATaGTGTGGGTTGCCCTGCATCCACTCACAGACTAGCAGCACCAAT +
Preference number: 1 (lower is better)
Translates to: EHQFSSGMQPQAGHI*CGLPCIHSQTSSTN
Trigger: ATTGGTGCTGCTAGTCTGTGAGTGGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR CCA 90 bp AACGGAATGGAGACACAGTGCCACTCACAGTACCGCGCTGCAGGCTaGGAGGATTTCCAATCAGTCTTACAACACGGTCCATTTCCAGTG +
Preference number: 1 (lower is better)
Translates to: NGMETQCHSQYRAAG*EDFQSVLQHGPFPV
Trigger: CACTGGAAATGGACCGTGTTGTAAGACTGATTGGAAATCCTCCCAGCCTGCAGCGCGGTACTGTGAGTGGCACTGTGTCTCCATTCCGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR CCA 90 bp ACTCGGCCAGACTGGAACATATATCTTGCTCCCACTCTGTCACATTaGTGCTCACACCCCACTAACAGTCAGCCACACTGGTGTGTACCC +
Preference number: 1 (lower is better)
Translates to: TRPDWNIYLAPTLSH*CSHPTNSQPHWCVP
Trigger: GGGTACACACCAGTGTGGCTGACTGTTAGTGGGGTGTGAGCACCAATGTGACAGAGTGGGAGCAAGATATATGTTCCAGTCTGGCCGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CCA 90 bp TTTACTCAGCTCCTGCATTACACGCGTGCACTCAGTCATTGTGCATaGCATACTCCACTCTCATCGGCACTGACGCGCCACAAACACTCG +
Preference number: 1 (lower is better)
Translates to: FTQLLHYTRALSHCA*HTPLSSALTRHKHS
Trigger: CGAGTGTTTGTGGCGCGTCAGTGCCGATGAGAGTGGAGTATGCCATGCACAATGACTGAGTGCACGCGTGTAATGCAGGAGCTGAGTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 90 bp AAGCCAGACCATATATACCTAGCGAAGGTACTGGCAGTTGATGGATaGCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAG +
Preference number: 1 (lower is better)
Translates to: KPDHIYLAKVLAVDG*PGREHQFSSGMQPQ
Trigger: CTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATCCATCAACTGCCAGTACCTTCGCTAGGTATATATGGTCTGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR GCA 90 bp AGTGAACGGCTTAGCAAAGAACAGGAAGGACAGGACAACGGTCATTaGTTTCCTTCCTGTTGTCACTGTTACAGCCAGAAGTGCACCGAA +
Preference number: 1 (lower is better)
Translates to: SERLSKEQEGQDNGH*FPSCCHCYSQKCTE
Trigger: TTCGGTGCACTTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAATGACCGTTGTCCTGTCCTTCCTGTTCTTTGCTAAGCCGTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR TCA 90 bp AAATATAAGCATCAAGAAGCCTCACCTAGCGAAGGTACTGGCAGTTaGTGGATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCA +
Preference number: 1 (lower is better)
Translates to: KYKHQEASPSEGTGS*WMPREGASIFFRDA
Trigger: TGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATCCATCAACTGCCAGTACCTTCGCTAGGTGAGGCTTCTTGATGCTTATATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CCA 90 bp ACTCTTATAACAGAGAAGAATTTAAATAACACCAGCAAAACGGAATaGAGACACAGTGCCACTCACAGTACCGCGCTGCAGGCTGGGAGG +
Preference number: 1 (lower is better)
Translates to: TLITEKNLNNTSKTE*RHSATHSTALQAGR
Trigger: CCTCCCAGCCTGCAGCGCGGTACTGTGAGTGGCACTGTGTCTCCATTCCGTTTTGCTGGTGTTATTTAAATTCTTCTCTGTTATAAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR GCA 90 bp GTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTaGTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAA +
Preference number: 1 (lower is better)
Translates to: VFCRGGCQGTTGCTI*SSDSGLQILWFVSQ
Trigger: TTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR CCA 90 bp TGTACACAAACCCGATTGAGTAGGAATACAAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCATGGCCTTCTCCTGAACGTTCCCAA +
Preference number: 1 (lower is better)
Translates to: CTQTRLSRNTKPSPS*KHCAVSWPSPERSQ
Trigger: TTGGGAACGTTCAGGAGAAGGCCATGAAACTGCACAATGCTTCCAACTCGGAGATGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
ENSMUST00000225714.2
3UTR TCA 90 bp TCCTTCATACTGACTTTATTGCAACACGTCCTAGGTGTGGGCTCTTaGTCATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGA +
Preference number: 1 (lower is better)
Translates to: SFILTLLQHVLGVGS*SFGVDQKPVFCRGG
Trigger: TCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAGAGCCCACACCTAGGACGTGTTGCAATAAAGTCAGTATGAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR GCA 90 bp ACATATACTTTACATATATACAAGAACAATCGTTTACTCAGCTCCTaGATTACACGCGTGCACTCAGTCATTGTGCATGGCATACTCCAC +
Preference number: 1 (lower is better)
Translates to: TYTLHIYKNNRLLSS*ITRVHSVIVHGILH
Trigger: GTGGAGTATGCCATGCACAATGACTGAGTGCACGCGTGTAATGCAGGAGCTGAGTAAACGATTGTTCTTGTATATATGTAAAGTATATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CCA 90 bp GTTCCTACACAGTCTGTGCCAACGTCCTTGACTTTTTCATGTCCATaGCTTTCTTTATCATGTTGTACACCGATGGCAATCTTATTTTAT +
Preference number: 1 (lower is better)
Translates to: VPTQSVPTSLTFSCP*LSLSCCTPMAILFY
Trigger: ATAAAATAAGATTGCCATCGGTGTACAACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGACGTTGGCACAGACTGTGTAGGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp CACCTGCCCAGGGATGGCACTGTGCACAGTGAGGTAGGTGAGTCCTCACATATGCAGGCTGGTCACATATaGTGTGGGTTGCCCTGCATC +
Preference number: 2 (lower is better)
Translates to: HLPRDGTVHSEVGESSHMQAGHI*CGLPCI
Trigger: GATGCAGGGCAACCCACAGCATATGTGACCAGCCTG...CATATGTGAGGACTCACCTACCTCACTGTGCACAGTGCCATCCCTGGGCAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR CCA 90 bp GATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCCATTGTGCAGTTTCATaGCCTTCTCCTGAACGTTCC +
Preference number: 2 (lower is better)
Translates to: DAQGGSINFLQGCSPRLVHCAVS*PSPERS
Trigger: GGAACGTTCAGGAGAAGGCCATGAAACTGCACAATG...GACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp AGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATATGCTGTGGGTTTCATGGCCTTCTCCTaGACGTTCCCAATGACAGCG +
Preference number: 2 (lower is better)
Translates to: SINFLQGCSPRLVTYAVGFMAFS*TFPMTA
Trigger: CGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAA...ACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp AAAGGAGATCCCAAAGTATCCAGTGAGGGAAAACAGGAAGGCGTAGCCGTAAGTCCCAATGACAGCGTCTaGACACAGCGCCAGGGAGAT +
Preference number: 2 (lower is better)
Translates to: KGDPKVSSEGKQEGVAVSPNDSV*TQRQGD
Trigger: ATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG...ACTTACGGCTACGCCTTCCTGTTTTCCCTCACTGGATACTTTGGGATCTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
3UTR-3UTR CCA 90 bp AGTCCCTTTCTACAGAGGGAGGTTAAGGTAGGACAGAAGCAGAGGCCCTGGAGGCTCAGTCATTGTGCATaGCATACTCCACTCTCATCG +
Preference number: 2 (lower is better)
Translates to: SPFLQREVKVGQKQRPWRLSHCA*HTPLSS
Trigger: CGATGAGAGTGGAGTATGCCATGCACAATGACTGAG...CCTCCAGGGCCTCTGCTTCTGTCCTACCTTAACCTCCCTCTGTAGAAAGGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR TCA 90 bp CAGAACAAAGGAGATCCCAAAGTATCCAGTGAGGGAAAACAGGAAGGCGTAGCCTTCATGGCCTTCTCCTaGACGTTCCCAATGACAGCG +
Preference number: 2 (lower is better)
Translates to: QNKGDPKVSSEGKQEGVAFMAFS*TFPMTA
Trigger: CGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAA...GGCTACGCCTTCCTGTTTTCCCTCACTGGATACTTTGGGATCTCCTTTGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTCTGTAGAGGTGGATaGCAAGGAACCACTGGATGT +
Preference number: 2 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSFCRGG*QGTTGC
Trigger: ACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp AGTCCCTTTCTACAGAGGGAGGTTAAGGTAGGACAGAAGCAGAGGCCCTGGAGGCTGGAACATATATCTTaGTCCCACTCTGTCACATTG +
Preference number: 2 (lower is better)
Translates to: SPFLQREVKVGQKQRPWRLEHIS*SHSVTL
Trigger: CAATGTGACAGAGTGGGAGCAAGATATATGTTCCAG...CCTCCAGGGCCTCTGCTTCTGTCCTACCTTAACCTCCCTCTGTAGAAAGGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR CCA 90 bp CCTGGAGGAACATGGCTTACCTGTTTTATCTTTCTGGCCTGCGTAGGTAGCTTTTGGTCACATATGCTGTaGGTTGCCCTGCATCCACTC +
Preference number: 2 (lower is better)
Translates to: PGGTWLTCFIFLACVGSFWSHML*VALHPL
Trigger: GAGTGGATGCAGGGCAACCCACAGCATATGTGACCA...AAAGCTACCTACGCAGGCCAGAAAGATAAAACAGGTAAGCCATGTTCCTCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR CCA 90 bp CGTAAGTCCCAACAGGGTTCTTTGAACAAAATGCCACTGCAGGGCCCAGTCCACAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCA +
Preference number: 2 (lower is better)
Translates to: RKSQQGSLNKMPLQGPVHKPSPS*KHCAVS
Trigger: TGAAACTGCACAATGCTTCCAACTCGGAGATGGTTT...GTGGACTGGGCCCTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGACTTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
ENSMUST00000225714.2
3UTR-3UTR CCA 90 bp CCTGGAGGAACATGGCTTACCTGTTTTATCTTTCTGGCCTGCGTAGGTAGCTTTGGAGAGAGTAGGAGGTaGATTTGGCTCATTGTCTAC +
Preference number: 2 (lower is better)
Translates to: PGGTWLTCFIFLACVGSFGESRR*IWLIVY
Trigger: GTAGACAATGAGCCAAATCCACCTCCTACTCTCTCC...AAAGCTACCTACGCAGGCCAGAAAGATAAAACAGGTAAGCCATGTTCCTCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR CCA 90 bp AAAGGAGATCCCAAAGTATCCAGTGAGGGAAAACAGGAAGGCGTAGCCGTAAGTCATTGTGCAGTTTCATaGCCTTCTCCTGAACGTTCC +
Preference number: 2 (lower is better)
Translates to: KGDPKVSSEGKQEGVAVSHCAVS*PSPERS
Trigger: GGAACGTTCAGGAGAAGGCCATGAAACTGCACAATG...ACTTACGGCTACGCCTTCCTGTTTTCCCTCACTGGATACTTTGGGATCTCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp ATGCCAAGGACAACTAACAAGCCAGACCATATATACCTAGCGAAGGTACTGGCACAGTCCACTAGTGCATaGCAGTCCCAGCAAAATGTA +
Preference number: 2 (lower is better)
Translates to: MPRTTNKPDHIYLAKVLAQSTSA*QSQQNV
Trigger: TACATTTTGCTGGGACTGTCATGCACTAGTGGACTG...TGCCAGTACCTTCGCTAGGTATATATGGTCTGGCTTGTTAGTTGTCCTTGGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp CTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATTTCTGTAGAGGTGGATaGCAAGGAACCACTGGATGT +
Preference number: 2 (lower is better)
Translates to: LDVQSAHLTAAFRSFGLYFCRGG*QGTTGC
Trigger: ACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA...ATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATTCTGTAGAGGTGGATaGCAAGGAACCACTGGATGT +
Preference number: 2 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQFCRGG*QGTTGC
Trigger: ACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp CTGTGTCCAGTTGACATAAAATATAAGCATCAAGAAGCCTCACCTAGCGAAGGTAATTTTCTTCAGGGATaGAGCCCCAGGCTGGTCACA +
Preference number: 2 (lower is better)
Translates to: LCPVDIKYKHQEASPSEGNFLQG*SPRLVT
Trigger: TGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATT...ACCTTCGCTAGGTGAGGCTTCTTGATGCTTATATTTTATGTCAACTGGACACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR GCA 90 bp TGTCCATGGCTTTCTTTATCATGTTGTACACCGATGGCAATCTTATTTTATCCACCCAATGACAGCGTCTaGACACAGCGCCAGGGAGAT +
Preference number: 2 (lower is better)
Translates to: CPWLSLSCCTPMAILFYPPNDSV*TQRQGD
Trigger: ATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG...TGGATAAAATAAGATTGCCATCGGTGTACAACATGATAAAGAAAGCCATGGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp CTGTGTCCAGTTGACATAAAATATAAGCATCAAGAAGCCTCACCTAGCGAAGGTTACACTCCCCTTTCATaGAGTCCCATGCTAACGAGA +
Preference number: 2 (lower is better)
Translates to: LCPVDIKYKHQEASPSEGYTPLS*SPMLTR
Trigger: TCTCGTTAGCATGGGACTGCATGAAAGGGGAGTGTA...ACCTTCGCTAGGTGAGGCTTCTTGATGCTTATATTTTATGTCAACTGGACACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR GCA 90 bp AATACCAGCTTCCTGTCTATCAAAGGCTACACTGTATGTTCAACCCAGTACTCAAAAAAGGACACAGTCTaGAGGAAGCAAAGGCTCACC +
Preference number: 2 (lower is better)
Translates to: NTSFLSIKGYTVCSTQYSKKDTV*RKQRLT
Trigger: GGTGAGCCTTTGCTTCCTGCAGACTGTGTCCTTTTT...TGAGTACTGGGTTGAACATACAGTGTAGCCTTTGATAGACAGGAAGCTGGTATT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR GCA 90 bp GTCCTTGACTTTTTCATGTCCATGGCTTTCTTTATCATGTTGTACACCGATGGCGAGTTGGAAGCATTGTaGAGTTTCATGGCCTTCTCC +
Preference number: 2 (lower is better)
Translates to: VLDFFMSMAFFIMLYTDGELEAL*SFMAFS
Trigger: GGAGAAGGCCATGAAACTGCACAATGCTTCCAACTC...GCCATCGGTGTACAACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR CCA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAAAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCA +
Preference number: 2 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQKPSPS*KHCAVS
Trigger: TGAAACTGCACAATGCTTCCAACTCGGAGATGGTTT...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR CAA 90 bp GATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTaGTATCACAAGCCTTTGCAAAGTGAATTGATTAATGGTTGTTCC +
Preference number: 2 (lower is better)
Translates to: DVQSAHLTAAFRSFG*YHKPLQSELINGCS
Trigger: GGAACAACCATTAATCAATTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp CTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATTTGATCATTTGGAGTTaGTCAAAAGCCTGTATTCTG +
Preference number: 2 (lower is better)
Translates to: LDVQSAHLTAAFRSFGLYLIIWS*SKACIL
Trigger: CAGAATACAGGCTTTTGATCAACTCCAAATGATCAA...ATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR GCA 90 bp GTCCTTGACTTTTTCATGTCCATGGCTTTCTTTATCATGTTGTACACCGATGGCTTTATCTTTCTGGCCTaGGTAGGTAGCTTTCGCATA +
Preference number: 2 (lower is better)
Translates to: VLDFFMSMAFFIMLYTDGFIFLA*VGSFRI
Trigger: TATGCGAAAGCTACCTACGCAGGCCAGAAAGATAAA...GCCATCGGTGTACAACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CAA 90 bp CATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTaGCAAAGTGAATTGATTAATGGTTGTTCCCACAGAGCTTTATTT +
Preference number: 2 (lower is better)
Translates to: HLTAAFRSFGLYHKP*QSELINGCSHRALF
Trigger: AAATAAAGCTCTGTGGGAACAACCATTAATCAATTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATTGATCATTTGGAGTTaGTCAAAAGCCTGTATTCTG +
Preference number: 2 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQLIIWS*SKACIL
Trigger: CAGAATACAGGCTTTTGATCAACTCCAAATGATCAA...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp GTCCTTGACTTTTTCATGTCCATGGCTTTCTTTATCATGTTGTACACCGATGGCGATAAGAGACTGGGATaGAAAGAATTCTTTGTGGAG +
Preference number: 2 (lower is better)
Translates to: VLDFFMSMAFFIMLYTDGDKRLG*KEFFVE
Trigger: CTCCACAAAGAATTCTTTTCATCCCAGTCTCTTATC...GCCATCGGTGTACAACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CAA 90 bp ATCAGTCTTACAACACGGTCCATTTCCAGTGAAATGTTCAGAACATaGCTAGGAAGCACTTTCCTTCATACTGACTTTATTGCAACACGT +
Preference number: 2 (lower is better)
Translates to: ISLTTRSISSEMFRT*LGSTFLHTDFIATR
Trigger: ACGTGTTGCAATAAAGTCAGTATGAAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTCACTGGAAATGGACCGTGTTGTAAGACTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp AATACCAGCTTCCTGTCTATCAAAGGCTACACTGTATGTTCAACCCAGTACTCACACTGCTGTTTAAGGTaGAATATGAAATCCAGTATC +
Preference number: 2 (lower is better)
Translates to: NTSFLSIKGYTVCSTQYSHCCLR*NMKSSI
Trigger: GATACTGGATTTCATATTTCACCTTAAACAGCAGTG...TGAGTACTGGGTTGAACATACAGTGTAGCCTTTGATAGACAGGAAGCTGGTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR TCA 90 bp TCCAGTGAAATGTTCAGAACATTGCTAGGAAGCACTTTCCTTCATACTGACTTTCTTTGCAAAGTGAATTaGTTAATGGTTGTTCCCACA +
Preference number: 2 (lower is better)
Translates to: SSEMFRTLLGSTFLHTDFLCKVN*LMVVPT
Trigger: TGTGGGAACAACCATTAATCAATTCACTTTGCAAAG...AAAGTCAGTATGAAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTCACTGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR TCA 90 bp CCCTTCATCCCATCTCCATTCTCTGCCATAACAAATTCTATTAAAACACCATTTCTTTGCAAAGTGAATTaGTTAATGGTTGTTCCCACA +
Preference number: 2 (lower is better)
Translates to: PFIPSPFSAITNSIKTPFLCKVN*LMVVPT
Trigger: TGTGGGAACAACCATTAATCAATTCACTTTGCAAAG...AAATGGTGTTTTAATAGAATTTGTTATGGCAGAGAATGGAGATGGGATGAAGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021870.12
ENSMUST00000225432.2
3UTR GCA 72 bp GGATGCAGCCCCAGGCTGGTCACATATGCTGTGGGTTaGCCTGCATCCACTCACAGACTAGCAGCACCAATT +
Preference number: 3 (lower is better)
Translates to: GCSPRLVTYAVG*PASTHRLAAPI
Trigger: AATTGGTGCTGCTAGTCTGTGAGTGGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR CCA 72 bp CTCCTGCATTACACGCGTGCACTCAGTCATTGTGCATaGCATACTCCACTCTCATCGGCACTGACGCGCCAC +
Preference number: 3 (lower is better)
Translates to: LLHYTRALSHCA*HTPLSSALTRH
Trigger: GTGGCGCGTCAGTGCCGATGAGAGTGGAGTATGCCATGCACAATGACTGAGTGCACGCGTGTAATGCAGGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp CACACTGGTGTGTACCCTTCACCCAGTCAGTCACTCTaGGTCCGTCATACACTCCCCTTTCATGCAGTCCCA +
Preference number: 3 (lower is better)
Translates to: HTGVYPSPSQSL*VRHTLPFHAVP
Trigger: TGGGACTGCATGAAAGGGGAGTGTATGACGGACGCAGAGTGACTGACTGGGTGAAGGGTACACACCAGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp TCAGCTCCTGCATTACACGCGTGCACTCAGTCATTGTaGATGGCATACTCCACTCTCATCGGCACTGACGCG +
Preference number: 3 (lower is better)
Translates to: SAPALHACTQSL*MAYSTLIGTDA
Trigger: CGCGTCAGTGCCGATGAGAGTGGAGTATGCCATGCACAATGACTGAGTGCACGCGTGTAATGCAGGAGCTGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp TTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATATaGTGTGGGTTGCCCTGCATCCACTCACAGACTAGC +
Preference number: 3 (lower is better)
Translates to: FSSGMQPQAGHI*CGLPCIHSQTS
Trigger: GCTAGTCTGTGAGTGGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR CCA 72 bp CATTGGTGCTCACACCCCACTAACAGTCAGCCACACTaGTGTGTACCCTTCACCCAGTCAGTCACTCTGCGT +
Preference number: 3 (lower is better)
Translates to: HWCSHPTNSQPH*CVPFTQSVTLR
Trigger: ACGCAGAGTGACTGACTGGGTGAAGGGTACACACCAGTGTGGCTGACTGTTAGTGGGGTGTGAGCACCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CCA 72 bp GGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTaGTCACATATGCTGTGGGTTGCCCTGCATCCACTC +
Preference number: 3 (lower is better)
Translates to: GASIFFRDAAPG*SHMLWVALHPL
Trigger: GAGTGGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR TCA 72 bp GTCATTGTGCATGGCATACTCCACTCTCATCGGCACTaGCGCGCCACAAACACTCGGCCAGACTGGAACATA +
Preference number: 3 (lower is better)
Translates to: VIVHGILHSHRH*RATNTRPDWNI
Trigger: TATGTTCCAGTCTGGCCGAGTGTTTGTGGCGCGTCAGTGCCGATGAGAGTGGAGTATGCCATGCACAATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp CGCCACAAACACTCGGCCAGACTGGAACATATATCTTaGTCCCACTCTGTCACATTGGTGCTCACACCCCAC +
Preference number: 3 (lower is better)
Translates to: RHKHSARLEHIS*SHSVTLVLTPH
Trigger: GTGGGGTGTGAGCACCAATGTGACAGAGTGGGAGCAAGATATATGTTCCAGTCTGGCCGAGTGTTTGTGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp TCAGTCACTCTGCGTCCGTCATACACTCCCCTTTCATaGAGTCCCATGCTAACGAGACCACATTTCCACTGG +
Preference number: 3 (lower is better)
Translates to: SVTLRPSYTPLS*SPMLTRPHFHW
Trigger: CCAGTGGAAATGTGGTCTCGTTAGCATGGGACTGCATGAAAGGGGAGTGTATGACGGACGCAGAGTGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp AAGCCTCACCTAGCGAAGGTACTGGCAGTTGATGGATaGCCAGGGAGGGAGCATCAATTTTCTTCAGGGATG +
Preference number: 3 (lower is better)
Translates to: KPHLAKVLAVDG*PGREHQFSSGM
Trigger: CATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATCCATCAACTGCCAGTACCTTCGCTAGGTGAGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp GGAGGAACATGGCTTACCTGTTTTATCTTTCTGGCCTaGGTAGGTAGCTTTCGCATAGACCCCAGGAGCACC +
Preference number: 3 (lower is better)
Translates to: GGTWLTCFIFLA*VGSFRIDPRST
Trigger: GGTGCTCCTGGGGTCTATGCGAAAGCTACCTACGCAGGCCAGAAAGATAAAACAGGTAAGCCATGTTCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR CAA 90 bp CCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATAAAACCATCTCCGAGTaGGAAGCATTGTGCAGTTTC +
Preference number: 3 (lower is better)
Translates to: PREGASIFFRDAAPGWSHKTISE*EALCSF
Trigger: GAAACTGCACAATGCTTCCAACTCGGAGATGGTTTT...ATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR CAA 90 bp CGTAAGTCCCAACAGGGTTCTTTGAACAAAATGCCACTGCAGGGCCCAGTCCACAAAACCATCTCCGAGTaGGAAGCATTGTGCAGTTTC +
Preference number: 3 (lower is better)
Translates to: RKSQQGSLNKMPLQGPVHKTISE*EALCSF
Trigger: GAAACTGCACAATGCTTCCAACTCGGAGATGGTTTT...GTGGACTGGGCCCTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGACTTACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
ENSMUST00000225714.2
3UTR GCA 72 bp AGAACAATCGTTTACTCAGCTCCTGCATTACACGCGTaGACTCAGTCATTGTGCATGGCATACTCCACTCTC +
Preference number: 3 (lower is better)
Translates to: RTIVYSAPALHA*TQSLCMAYSTL
Trigger: GAGAGTGGAGTATGCCATGCACAATGACTGAGTGCACGCGTGTAATGCAGGAGCTGAGTAAACGATTGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR GCA 72 bp CATATATACCTAGCGAAGGTACTGGCAGTTGATGGATaGCCAGGGAGGGAGCATCAATTTTCTTCAGGGATG +
Preference number: 3 (lower is better)
Translates to: HIYLAKVLAVDG*PGREHQFSSGM
Trigger: CATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATCCATCAACTGCCAGTACCTTCGCTAGGTATATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR CAA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCGAAATGTTCAGAACATaGCTAGGAAGCACTTTCCTT +
Preference number: 3 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSEMFRT*LGSTFL
Trigger: AAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTC...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR CAA 90 bp CGTAAGTCCCAACAGGGTTCTTTGAACAAAATGCCACTGCAGGGCCCAGTCCACTGTACACAAACCCGATaGAGTAGGAATACAAAACCA +
Preference number: 3 (lower is better)
Translates to: RKSQQGSLNKMPLQGPVHCTQTR*SRNTKP
Trigger: TGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA...GTGGACTGGGCCCTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGACTTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
ENSMUST00000225714.2
3UTR-3UTR CAA 90 bp CGTAAGTCCCAACAGGGTTCTTTGAACAAAATGCCACTGCAGGGCCCAGTCCACCTTGATCATTTGGAGTaGATCAAAAGCCTGTATTCT +
Preference number: 3 (lower is better)
Translates to: RKSQQGSLNKMPLQGPVHLDHLE*IKSLYS
Trigger: AGAATACAGGCTTTTGATCAACTCCAAATGATCAAG...GTGGACTGGGCCCTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGACTTACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR-3UTR CAA 90 bp AGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATATGCTGTGGGTTGTACACAAACCCGATaGAGTAGGAATACAAAACCA +
Preference number: 3 (lower is better)
Translates to: SINFLQGCSPRLVTYAVGCTQTR*SRNTKP
Trigger: TGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA...ACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR TCA 72 bp ATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTaGCAGCGGCCTTCAGATCCTTTGGTTTGTATCACA +
Preference number: 3 (lower is better)
Translates to: MPRNHWMYNLLI*QRPSDPLVCIT
Trigger: TGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR CCA 72 bp ACAGAGAAGAATTTAAATAACACCAGCAAAACGGAATaGAGACACAGTGCCACTCACAGTACCGCGCTGCAG +
Preference number: 3 (lower is better)
Translates to: TEKNLNNTSKTE*RHSATHSTALQ
Trigger: CTGCAGCGCGGTACTGTGAGTGGCACTGTGTCTCCATTCCGTTTTGCTGGTGTTATTTAAATTCTTCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR CAA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCCCAACAGGGTTCTTaGAACAAAATGCCACTGCAG +
Preference number: 3 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQSQQGS*NKMPLQ
Trigger: CTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGA...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR GCA 72 bp GGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATaGCAAGGAACCACTGGATGTACAATCTGCTCATCT +
Preference number: 3 (lower is better)
Translates to: GVDQKPVFCRGG*QGTTGCTICSS
Trigger: AGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR CCA 72 bp GCTAACAACCATAACCAAAAGCAACTCAAGGAAGAATaGCTTTGTCTGGCTTACCCATCCCAAGTCCCTTTC +
Preference number: 3 (lower is better)
Translates to: ANNHNQKQLKEE*LCLAYPSQVPF
Trigger: GAAAGGGACTTGGGATGGGTAAGCCAGACAAAGCCATTCTTCCTTGAGTTGCTTTTGGTTATGGTTGTTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CCA 72 bp ACCCGATTGAGTAGGAATACAAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCATGGCCTTCTCCTGAA +
Preference number: 3 (lower is better)
Translates to: TRLSRNTKPSPS*KHCAVSWPSPE
Trigger: TTCAGGAGAAGGCCATGAAACTGCACAATGCTTCCAACTCGGAGATGGTTTTGTATTCCTACTCAATCGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000224429.2
ENSMUST00000225461.2
ENSMUST00000225714.2
3UTR-3UTR CAA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATGGGCTCTTGATCATTaGGAGTTGATCAAAAGCCTG +
Preference number: 3 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQWALDH*ELIKSL
Trigger: CAGGCTTTTGATCAACTCCAAATGATCAAGAGCCCA...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR CCA 72 bp CAGTCTGTGCCAACGTCCTTGACTTTTTCATGTCCATaGCTTTCTTTATCATGTTGTACACCGATGGCAATC +
Preference number: 3 (lower is better)
Translates to: QSVPTSLTFSCP*LSLSCCTPMAI
Trigger: GATTGCCATCGGTGTACAACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGACGTTGGCACAGACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
3UTR TCA 72 bp CTGACTTTATTGCAACACGTCCTAGGTGTGGGCTCTTaGTCATTTGGAGTTGATCAAAAGCCTGTATTCTGT +
Preference number: 3 (lower is better)
Translates to: LTLLQHVLGVGS*SFGVDQKPVFC
Trigger: ACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAGAGCCCACACCTAGGACGTGTTGCAATAAAGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR-3UTR CAA 90 bp AATACCAGCTTCCTGTCTATCAAAGGCTACACTGTATGTTCAACCCAGTACTCAACTGGAACATATATCTaGCTCCCACTCTGTCACATT +
Preference number: 3 (lower is better)
Translates to: NTSFLSIKGYTVCSTQYSTGTYI*LPLCHI
Trigger: AATGTGACAGAGTGGGAGCAAGATATATGTTCCAGT...TGAGTACTGGGTTGAACATACAGTGTAGCCTTTGATAGACAGGAAGCTGGTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR TCA 72 bp CACAGACTAGCAGCACCAATTAGACTCAGTAGTGAATaGAAGATAGAATGCATTCAGTTGGGACAGAAATGT +
Preference number: 3 (lower is better)
Translates to: HRLAAPIRLSSE*KIECIQLGQKC
Trigger: ACATTTCTGTCCCAACTGAATGCATTCTATCTTTCATTCACTACTGAGTCTAATTGGTGCTGCTAGTCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR-3UTR CAA 90 bp CCCTTCATCCCATCTCCATTCTCTGCCATAACAAATTCTATTAAAACACCATTTGAAATGTTCAGAACATaGCTAGGAAGCACTTTCCTT +
Preference number: 3 (lower is better)
Translates to: PFIPSPFSAITNSIKTPFEMFRT*LGSTFL
Trigger: AAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTC...AAATGGTGTTTTAATAGAATTTGTTATGGCAGAGAATGGAGATGGGATGAAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021870.12
ENSMUST00000225432.2
3UTR-3UTR CAA 90 bp TGTCCATGGCTTTCTTTATCATGTTGTACACCGATGGCAATCTTATTTTATCCAGAAATGTTCAGAACATaGCTAGGAAGCACTTTCCTT +
Preference number: 3 (lower is better)
Translates to: CPWLSLSCCTPMAILFYPEMFRT*LGSTFL
Trigger: AAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTC...TGGATAAAATAAGATTGCCATCGGTGTACAACATGATAAAGAAAGCCATGGACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
3UTR TCA 72 bp ATAGGAAAAAGGCACTTAATAGATAAGAGACTGGGATaGAAAGAATTCTTTGTGGAGGACAACAGGCTAACA +
Preference number: 3 (lower is better)
Translates to: IGKRHLIDKRLG*KEFFVEDNRLT
Trigger: TGTTAGCCTGTTGTCCTCCACAAAGAATTCTTTTCATCCCAGTCTCTTATCTATTAAGTGCCTTTTTCCTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR TCA 72 bp CCTTTGGTTTGTATCACAAGCCTTTGCAAAGTGAATTaGTTAATGGTTGTTCCCACAGAGCTTTATTTTAAA +
Preference number: 3 (lower is better)
Translates to: PLVCITSLCKVN*LMVVPTELYFK
Trigger: TTTAAAATAAAGCTCTGTGGGAACAACCATTAATCAATTCACTTTGCAAAGGCTTGTGATACAAACCAAAGG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR GCA 90 bp GATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCCCCAATGACAGCGTCTaGACACAGCGCCAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: DAQGGSINFLQGCSPRLVPNDSV*TQRQGD
Trigger: ATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG...GACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CAA 72 bp GGGATGCAGCCCCAGGCTGGTCACATATGCTGTGGGTaGCCCTGCATCCACTCACAGACTAGCAGCACCAAT +
Preference number: 4 (lower is better)
Translates to: GMQPQAGHICCG*PCIHSQTSSTN
Trigger: ATTGGTGCTGCTAGTCTGTGAGTGGATGCAGGGCAACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
CDS-3UTR CCA 90 bp GATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATGGCCTGCGTTTTaGAGGGCACTGAGATGGAGA +
Preference number: 4 (lower is better)
Translates to: DAQGGSINFLQGCSPRLVTWPAF*RALRWR
Trigger: TCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGT...GACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
CDS-3UTR GCA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCCCCAATGACAGCGTCTaGACACAGCGCCAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSPNDSV*TQRQGD
Trigger: ATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCCTGTCTTTCTTCTGCTaGCTGGGCCTCTCCACCCTG +
Preference number: 4 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSLSFFC*LGLSTL
Trigger: CAGGGTGGAGAGGCCCAGCCAGCAGAAGAAAGACAG...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR TCA 90 bp AGTCCCTTTCTACAGAGGGAGGTTAAGGTAGGACAGAAGCAGAGGCCCTGGAGGTTCATGGCCTTCTCCTaGACGTTCCCAATGACAGCG +
Preference number: 4 (lower is better)
Translates to: SPFLQREVKVGQKQRPWRFMAFS*TFPMTA
Trigger: CGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAA...CCTCCAGGGCCTCTGCTTCTGTCCTACCTTAACCTCCCTCTGTAGAAAGGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
3UTR CAA 72 bp GCGCCACAAACACTCGGCCAGACTGGAACATATATCTaGCTCCCACTCTGTCACATTGGTGCTCACACCCCA +
Preference number: 4 (lower is better)
Translates to: APQTLGQTGTYI*LPLCHIGAHTP
Trigger: TGGGGTGTGAGCACCAATGTGACAGAGTGGGAGCAAGATATATGTTCCAGTCTGGCCGAGTGTTTGTGGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR TCA 90 bp GGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGTTCATGGCCTTCTCCTaGACGTTCCCAATGACAGCG +
Preference number: 4 (lower is better)
Translates to: GCQGTTGCTICSSDSGLQFMAFS*TFPMTA
Trigger: CGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAA...CTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR TCA 90 bp CCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATCAGTCCACTAGTGCATaGCAGTCCCAGCAAAATGTA +
Preference number: 4 (lower is better)
Translates to: PREGASIFFRDAAPGWSHQSTSA*QSQQNV
Trigger: TACATTTTGCTGGGACTGTCATGCACTAGTGGACTG...ATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR GCA 90 bp GAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTCCCAATGACAGCGTCTaGACACAGCGCCAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: EPLDVQSAHLTAAFRSFGPNDSV*TQRQGD
Trigger: ATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG...ACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR TCA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCCTGTGCCAACGTCCTTaGCTTTTTCATGTCCATGGC +
Preference number: 4 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSLCQRP*LFHVHG
Trigger: GCCATGGACATGAAAAAGTCAAGGACGTTGGCACAG...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCTTTCTTCTGCTGGCTaGGCCTCTCCACCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LDVQSAHLTAAFRSFGLYLSSAG*ASPPCS
Trigger: GGAGCAGGGTGGAGAGGCCCAGCCAGCAGAAGAAAG...ATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR CCA 90 bp GCGCTGCAGGCTGGGAGGATTTCCAATCAGTCTTACAACACGGTCCATTTCCAGTGGAGGGCACTGAGATaGAGACATACTTCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: ALQAGRISNQSYNTVHFQWRALR*RHTSWS
Trigger: ACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCA...CTGGAAATGGACCGTGTTGTAAGACTGATTGGAAATCCTCCCAGCCTGCAGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp GCGCTGCAGGCTGGGAGGATTTCCAATCAGTCTTACAACACGGTCCATTTCCAGCAGTCCACTAGTGCATaGCAGTCCCAGCAAAATGTA +
Preference number: 4 (lower is better)
Translates to: ALQAGRISNQSYNTVHFQQSTSA*QSQQNV
Trigger: TACATTTTGCTGGGACTGTCATGCACTAGTGGACTG...CTGGAAATGGACCGTGTTGTAAGACTGATTGGAAATCCTCCCAGCCTGCAGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR TCA 90 bp GGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGCAGTCCACTAGTGCATaGCAGTCCCAGCAAAATGTA +
Preference number: 4 (lower is better)
Translates to: GCQGTTGCTICSSDSGLQQSTSA*QSQQNV
Trigger: TACATTTTGCTGGGACTGTCATGCACTAGTGGACTG...CTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp GATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACCCCAATGACAGCGTCTaGACACAGCGCCAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: DVQSAHLTAAFRSFGLYHPNDSV*TQRQGD
Trigger: ATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG...GTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp GGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGGAGTTGGAAGCATTGTaGAGTTTCATGGCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: GCQGTTGCTICSSDSGLQELEAL*SFMAFS
Trigger: GGAGAAGGCCATGAAACTGCACAATGCTTCCAACTC...CTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp TGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCACATGGCCTGCGTTTTaGAGGGCACTGAGATGGAGA +
Preference number: 4 (lower is better)
Translates to: CRGGCQGTTGCTICSSDSTWPAF*RALRWR
Trigger: TCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGT...GCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR CCA 90 bp ATTGTGCAGTTTCATGGCCTTCTCCTGAACGTTCCCAATGACAGCGTCTGCACAACATGGCCTGCGTTTTaGAGGGCACTGAGATGGAGA +
Preference number: 4 (lower is better)
Translates to: IVQFHGLLLNVPNDSVCTTWPAF*RALRWR
Trigger: TCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGT...TGTGCAGACGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAAACTGCACAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS-3UTR CCA 90 bp GGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGCATTGTGCAGTTTCATaGCCTTCTCCTGAACGTTCC +
Preference number: 4 (lower is better)
Translates to: GCQGTTGCTICSSDSGLQHCAVS*PSPERS
Trigger: GGAACGTTCAGGAGAAGGCCATGAAACTGCACAATG...CTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp TCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGGCCACAGTCAAGGCCTaGAACTTGGTCTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: SAHLTAAFRSFGLYHKPLATVKA*NLVSAL
Trigger: AAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGC...CAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR GCA 90 bp GTCAGCCACACTGGTGTGTACCCTTCACCCAGTCAGTCACTCTGCGTCCGTCATTGTTACAGCCAGAAGTaGACCGAAGATTTTAATGAG +
Preference number: 4 (lower is better)
Translates to: VSHTGVYPSPSQSLCVRHCYSQK*TEDFNE
Trigger: CTCATTAAAATCTTCGGTGCACTTCTGGCTGTAACA...ATGACGGACGCAGAGTGACTGACTGGGTGAAGGGTACACACCAGTGTGGCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR CCA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCGAAGATGACTTGGGTTaGGTAATTCAGGTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSEDDLG*VIQVAQ
Trigger: TTGGGCTACCTGAATTACCCAACCCAAGTCATCTTC...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR TCA 90 bp TCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGCTTCTCCTTCTGTCCTaGGTGAGCTGTAGCTCGATT +
Preference number: 4 (lower is better)
Translates to: SAHLTAAFRSFGLYHKPLLLLLS*VSCSSI
Trigger: AATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAG...CAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR GCA 90 bp TGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCCTGCAACTTGGTCTCTaGTCTTTTCGGATGCTTCGT +
Preference number: 4 (lower is better)
Translates to: CRGGCQGTTGCTICSSDSLQLGL*SFRMLR
Trigger: ACGAAGCATCCGAAAAGAGCAGAGACCAAGTTGCAG...GCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR GCA 90 bp TTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACCCATTGTTTCTGCTCTaGCACAGTCAAGGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: FCRGGCQGTTGCTICSSDPLFLL*HSQGLQ
Trigger: TTGCAGGCCTTGACTGTGGCAGAGCAGAAACAATGG...GTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR GCA 90 bp TGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGAGTTGGAAGCATTGTaGAGTTTCATGGCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: CRGGCQGTTGCTICSSDSELEAL*SFMAFS
Trigger: GGAGAAGGCCATGAAACTGCACAATGCTTCCAACTC...GCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGCAAAGTGAAACATGGCCTGCGTTTTaGAGGGCACTGAGATGGAGA +
Preference number: 4 (lower is better)
Translates to: LTAAFRSFGLYHKPLQSETWPAF*RALRWR
Trigger: TCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGT...TTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp GAACACAGTTCCTACACAGTCTGTGCCAACGTCCTTGACTTTTTCATGTCCATGCTTCTCCTTCTGTCCTaGGTGAGCTGTAGCTCGATT +
Preference number: 4 (lower is better)
Translates to: EHSSYTVCANVLDFFMSMLLLLS*VSCSSI
Trigger: AATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAG...CATGGACATGAAAAAGTCAAGGACGTTGGCACAGACTGTGTAGGAACTGTGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTTTCATGGCCTTCTCCTaGACGTTCCCAATGACAGCG +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTFMAFS*TFPMTA
Trigger: CGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAA...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR TCA 90 bp GTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTCTGTGCCAACGTCCTTaGCTTTTTCATGTCCATGGC +
Preference number: 4 (lower is better)
Translates to: VFCRGGCQGTTGCTICSSLCQRP*LFHVHG
Trigger: GCCATGGACATGAAAAAGTCAAGGACGTTGGCACAG...AGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTACATGGCCTGCGTTTTaGAGGGCACTGAGATGGAGA +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTTWPAF*RALRWR
Trigger: TCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGT...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR CCA 90 bp GAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTGAAGATGACTTGGGTTaGGTAATTCAGGTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: EPLDVQSAHLTAAFRSFGEDDLG*VIQVAQ
Trigger: TTGGGCTACCTGAATTACCCAACCCAAGTCATCTTC...ACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp GGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGTGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: GCQGTTGCTICSSDSGLQCQIKV*CNCAVS
Trigger: GCTGACAGCACAATTGCACCAAACTTTAATCTGACA...CTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CGTAAGTCCCAACAGGGTTCTTTGAACAAAATGCCACTGCAGGGCCCAGTCCACTGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: RKSQQGSLNKMPLQGPVHCQIKV*CNCAVS
Trigger: GCTGACAGCACAATTGCACCAAACTTTAATCTGACA...GTGGACTGGGCCCTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGACTTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224429.2
CDS-3UTR CCA 90 bp TTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACCATTGTGCAGTTTCATaGCCTTCTCCTGAACGTTCC +
Preference number: 4 (lower is better)
Translates to: FCRGGCQGTTGCTICSSDHCAVS*PSPERS
Trigger: GGAACGTTCAGGAGAAGGCCATGAAACTGCACAATG...GTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CCTGGAGGAACATGGCTTACCTGTTTTATCTTTCTGGCCTGCGTAGGTAGCTTTCATTGTGCAGTTTCATaGCCTTCTCCTGAACGTTCC +
Preference number: 4 (lower is better)
Translates to: PGGTWLTCFIFLACVGSFHCAVS*PSPERS
Trigger: GGAACGTTCAGGAGAAGGCCATGAAACTGCACAATG...AAAGCTACCTACGCAGGCCAGAAAGATAAAACAGGTAAGCCATGTTCCTCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR TCA 90 bp ACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGCAAAGTGAATTGCTTCTCCTTCTGTCCTaGGTGAGCTGTAGCTCGATT +
Preference number: 4 (lower is better)
Translates to: TAAFRSFGLYHKPLQSELLLLLS*VSCSSI
Trigger: AATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAG...CAATTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp ACCCGATTGAGTAGGAATACAAAACCATCTCCGAGTTGGAAGCATTGTGCAGTTCTTCTCCTTCTGTCCTaGGTGAGCTGTAGCTCGATT +
Preference number: 4 (lower is better)
Translates to: TRLSRNTKPSPSWKHCAVLLLLS*VSCSSI
Trigger: AATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAG...AACTGCACAATGCTTCCAACTCGGAGATGGTTTTGTATTCCTACTCAATCGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS-3UTR TCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTCTGTGCCAACGTCCTTaGCTTTTTCATGTCCATGGC +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTLCQRP*LFHVHG
Trigger: GCCATGGACATGAAAAAGTCAAGGACGTTGGCACAG...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp TCCAGTGAAATGTTCAGAACATTGCTAGGAAGCACTTTCCTTCATACTGACTTTGTCCTGTCTTTCTTCTaGTGGCTGGGCCTCTCCACC +
Preference number: 4 (lower is better)
Translates to: SSEMFRTLLGSTFLHTDFVLSFF*WLGLST
Trigger: GGTGGAGAGGCCCAGCCAGCAGAAGAAAGACAGGAC...AAAGTCAGTATGAAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTCACTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR CCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTTGGAGGGCACTGAGATaGAGACATACTTCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTWRALR*RHTSWS
Trigger: ACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCA...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR CCA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATGGAGGGCACTGAGATaGAGACATACTTCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQWRALR*RHTSWS
Trigger: ACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCA...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp CTTGATCATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGCTTCTCCTTCTGTCCTaGGTGAGCTGTAGCTCGATT +
Preference number: 4 (lower is better)
Translates to: LDHLELIKSLYSVEVDAKLLLLS*VSCSSI
Trigger: AATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAG...CTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTCAGTCCACTAGTGCATaGCAGTCCCAGCAAAATGTA +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTQSTSA*QSQQNV
Trigger: TACATTTTGCTGGGACTGTCATGCACTAGTGGACTG...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp TTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACCAGATTAAAGTTTGGTaGAATTGTGCTGTCAGCGAG +
Preference number: 4 (lower is better)
Translates to: FCRGGCQGTTGCTICSSDQIKVW*NCAVSE
Trigger: CTCGCTGACAGCACAATTGCACCAAACTTTAATCTG...GTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp CATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCAGAGTTGGAAGCATTGTaGAGTTTCATGGCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: HLELIKSLYSVEVDAKEPELEAL*SFMAFS
Trigger: GGAGAAGGCCATGAAACTGCACAATGCTTCCAACTC...TGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp TGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCTGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: CRGGCQGTTGCTICSSDSCQIKV*CNCAVS
Trigger: GCTGACAGCACAATTGCACCAAACTTTAATCTGACA...GCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp ATTGTGCAGTTTCATGGCCTTCTCCTGAACGTTCCCAATGACAGCGTCTGCACAGGCCAGAAATCTAACTaGGCTGTCAGATTAAAGTTT +
Preference number: 4 (lower is better)
Translates to: IVQFHGLLLNVPNDSVCTGQKSN*AVRLKF
Trigger: AAACTTTAATCTGACAGCCCAGTTAGATTTCTGGCC...TGTGCAGACGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAAACTGCACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224429.2
CDS-3UTR CCA 90 bp TTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACCATGTAGGTTTTTCCTaGTATTCTTCTCCTTCTGTC +
Preference number: 4 (lower is better)
Translates to: FCRGGCQGTTGCTICSSDHVGFS*YSSPSV
Trigger: GACAGAAGGAGAAGAATACCAGGAAAAACCTACATG...GTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAAGAAGATGACTTGGGTTaGGTAATTCAGGTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQEDDLG*VIQVAQ
Trigger: TTGGGCTACCTGAATTACCCAACCCAAGTCATCTTC...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CTTGATCATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGCATTGTGCAGTTTCATaGCCTTCTCCTGAACGTTCC +
Preference number: 4 (lower is better)
Translates to: LDHLELIKSLYSVEVDAKHCAVS*PSPERS
Trigger: GGAACGTTCAGGAGAAGGCCATGAAACTGCACAATG...CTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp GTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCA +
Preference number: 4 (lower is better)
Translates to: VFCRGGCQGTTGCTICSSKPSPS*KHCAVS
Trigger: TGAAACTGCACAATGCTTCCAACTCGGAGATGGTTT...AGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp GATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCA +
Preference number: 4 (lower is better)
Translates to: DVQSAHLTAAFRSFGLYHKPSPS*KHCAVS
Trigger: TGAAACTGCACAATGCTTCCAACTCGGAGATGGTTT...GTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR TCA 90 bp CATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCATTGTACCGCTTTCCTTaGATAAAAACTCCTCCTAGC +
Preference number: 4 (lower is better)
Translates to: HLELIKSLYSVEVDAKEPLYRFP*IKTPPS
Trigger: GCTAGGAGGAGTTTTTATTCAAGGAAAGCGGTACAA...TGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp GATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACTGTTACAGCCAGAAGTaGACCGAAGATTTTAATGAG +
Preference number: 4 (lower is better)
Translates to: DVQSAHLTAAFRSFGLYHCYSQK*TEDFNE
Trigger: CTCATTAAAATCTTCGGTGCACTTCTGGCTGTAACA...GTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR GCA 90 bp CTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATTGTTACAGCCAGAAGTaGACCGAAGATTTTAATGAG +
Preference number: 4 (lower is better)
Translates to: LDVQSAHLTAAFRSFGLYCYSQK*TEDFNE
Trigger: CTCATTAAAATCTTCGGTGCACTTCTGGCTGTAACA...ATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCATGTAGGTTTTTCCTaGTATTCTTCTCCTTCTGTC +
Preference number: 4 (lower is better)
Translates to: LDVQSAHLTAAFRSFGLYHVGFS*YSSPSV
Trigger: GACAGAAGGAGAAGAATACCAGGAAAAACCTACATG...ATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp CTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGCAAAGTGAACATGTAGGTTTTTCCTaGTATTCTTCTCCTTCTGTC +
Preference number: 4 (lower is better)
Translates to: LTAAFRSFGLYHKPLQSEHVGFS*YSSPSV
Trigger: GACAGAAGGAGAAGAATACCAGGAAAAACCTACATG...TTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCA +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTKPSPS*KHCAVS
Trigger: TGAAACTGCACAATGCTTCCAACTCGGAGATGGTTT...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
3UTR CAA 72 bp GCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTaGCAAAGTGAATTGATTAATGGTTGTTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: AAFRSFGLYHKP*QSELINGCSHR
Trigger: TCTGTGGGAACAACCATTAATCAATTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
3UTR CAA 72 bp GAGAACACAGTTCCTACACAGTCTGTGCCAACGTCCTaGACTTTTTCATGTCCATGGCTTTCTTTATCATGT +
Preference number: 4 (lower is better)
Translates to: ENTVPTQSVPTS*TFSCPWLSLSC
Trigger: ACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGACGTTGGCACAGACTGTGTAGGAACTGTGTTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000225396.2
ENSMUST00000225461.2
CDS-3UTR TCA 90 bp CTTGATCATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGTTGTACCGCTTTCCTTaGATAAAAACTCCTCCTAGC +
Preference number: 4 (lower is better)
Translates to: LDHLELIKSLYSVEVDAKLYRFP*IKTPPS
Trigger: GCTAGGAGGAGTTTTTATTCAAGGAAAGCGGTACAA...CTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CCA 90 bp TTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTTGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: FGVDQKPVFCRGGCQGTTCQIKV*CNCAVS
Trigger: GCTGACAGCACAATTGCACCAAACTTTAATCTGACA...AGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
3UTR CAA 72 bp TCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTaGTATCACAAGCCTTTGCAAAGTGAATTGATTAAT +
Preference number: 4 (lower is better)
Translates to: SAHLTAAFRSFG*YHKPLQSELIN
Trigger: ATTAATCAATTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225461.2
CDS-3UTR CCA 90 bp TTTAAAGAGGAGAGAGTAGGAGGTGGATTTGGCTCATTGTCTACATTGTATAGAAAACCATCTCCGAGTTaGAAGCATTGTGCAGTTTCA +
Preference number: 4 (lower is better)
Translates to: FKEERVGGGFGSLSTLYRKPSPS*KHCAVS
Trigger: TGAAACTGCACAATGCTTCCAACTCGGAGATGGTTT...TCTATACAATGTAGACAATGAGCCAAATCCACCTCCTACTCTCTCCTCTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR CCA 90 bp TTTAAAGAGGAGAGAGTAGGAGGTGGATTTGGCTCATTGTCTACATTGTATAGATGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: FKEERVGGGFGSLSTLYRCQIKV*CNCAVS
Trigger: GCTGACAGCACAATTGCACCAAACTTTAATCTGACA...TCTATACAATGTAGACAATGAGCCAAATCCACCTCCTACTCTCTCCTCTTTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR GCA 90 bp CCCTTCATCCCATCTCCATTCTCTGCCATAACAAATTCTATTAAAACACCATTTTGTTACAGCCAGAAGTaGACCGAAGATTTTAATGAG +
Preference number: 4 (lower is better)
Translates to: PFIPSPFSAITNSIKTPFCYSQK*TEDFNE
Trigger: CTCATTAAAATCTTCGGTGCACTTCTGGCTGTAACA...AAATGGTGTTTTAATAGAATTTGTTATGGCAGAGAATGGAGATGGGATGAAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021870.12
ENSMUST00000225432.2
CDS GCA 90 bp CTGAGGTTCACGCCCAGCACCACGACGTCCTCAACTGACTTGATGTaGGGCGACATGGCCTGCGTTTTGGAGGGCACTGAGATGGAGACA +
Preference number: 5 (lower is better)
Translates to: LRFTPSTTTSSTDLM*GDMACVLEGTEMET
Trigger: TGTCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS GCA 90 bp AGCACCACGACGTCCTCAACTGACTTGATGTGCGGCGACATGGCCTaGGTTTTGGAGGGCACTGAGATGGAGACATACTTCCTGGAGTTG +
Preference number: 5 (lower is better)
Translates to: STTTSSTDLMCGDMA*VLEGTEMETYFLEL
Trigger: CAACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGTCGTGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS GCA 90 bp GCTGTCAGCGAGGGTAAACCAGATCAGGCCCAGGCTCATGCACACTaGGGCAGACACATCTGCAAGGTTGTACCGCTTTCCTTGAATAAA +
Preference number: 5 (lower is better)
Translates to: AVSEGKPDQAQAHAH*GRHICKVVPLSLNK
Trigger: TTTATTCAAGGAAAGCGGTACAACCTTGCAGATGTGTCTGCCGCAGTGTGCATGAGCCTGGGCCTGATCTGGTTTACCCTCGCTGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225568.2
CDS-3UTR CAA 90 bp GATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCAAAACCATCTCCGAGTaGGAAGCATTGTGCAGTTTC +
Preference number: 5 (lower is better)
Translates to: DAQGGSINFLQGCSPRLVKTISE*EALCSF
Trigger: GAAACTGCACAATGCTTCCAACTCGGAGATGGTTTT...GACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR CAA 90 bp GATGCCCAGGGAGGGAGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCTTGCTTTCCTTCCTGTaGTCACTGTTACAGCCAGAA +
Preference number: 5 (lower is better)
Translates to: DAQGGSINFLQGCSPRLVLLSFL*SLLQPE
Trigger: TTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAA...GACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCTCCCTCCCTGGGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR CAA 90 bp GGAAGCATTGTGCAGTTTCATGGCCTTCTCCTGAACGTTCCCAATGACAGCGTCGGACGGGAAGCAAGGTaGGCCAGAAATCTAACTGGG +
Preference number: 5 (lower is better)
Translates to: GSIVQFHGLLLNVPNDSVGREAR*ARNLTG
Trigger: CCCAGTTAGATTTCTGGCCAACCTTGCTTCCCGTCC...GACGCTGTCATTGGGAACGTTCAGGAGAAGGCCATGAAACTGCACAATGCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224429.2
CDS GCA 90 bp CAGCGCCAGGGAGATAAGCATCACACCTGTCAGATTAAAGTTTGGTaGAATTGTGCTGTCAGCGAGGGTAAACCAGATCAGGCCCAGGCT +
Preference number: 5 (lower is better)
Translates to: QRQGDKHHTCQIKVW*NCAVSEGKPDQAQA
Trigger: AGCCTGGGCCTGATCTGGTTTACCCTCGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000224645.2
ENSMUST00000225396.2
ENSMUST00000225432.2
ENSMUST00000225568.2
CDS-3UTR CAA 90 bp TCACCCAGTCAGTCACTCTGCGTCCGTCATACACTCCCCTTTCATGCAGTCCCAACAGGACAACGGTCATaGCTTTCCTTCCTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: SPSQSLCVRHTLPFHAVPTGQRS*LSFLLS
Trigger: TGACAACAGGAAGGAAAGCAATGACCGTTGTCCTGT...TGGGACTGCATGAAAGGGGAGTGTATGACGGACGCAGAGTGACTGACTGGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS CCA 90 bp ACACAGCGCCAGGGAGATAAGCATCACACCTGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGCGAGGGTAAACCAGATCAGGCCCAG +
Preference number: 5 (lower is better)
Translates to: TQRQGDKHHTCQIKV*CNCAVSEGKPDQAQ
Trigger: CTGGGCCTGATCTGGTTTACCCTCGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCGCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000224645.2
ENSMUST00000225396.2
ENSMUST00000225432.2
ENSMUST00000225568.2
CDS GCA 90 bp GTTGAACTTGAGGTCCATTGTTTCTGCTCTGCCACAGTCAAGGCCTaGAACTTGGTCTCTGCTCTTTTCGGATGCTTCGTCCTGTCTTTC +
Preference number: 5 (lower is better)
Translates to: VELEVHCFCSATVKA*NLVSALFGCFVLSF
Trigger: GAAAGACAGGACGAAGCATCCGAAAAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGCAGAGCAGAAACAATGGACCTCAAGTTCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR CAA 90 bp GCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCGCACTTGAAGATGACTaGGGTTGGGTAATTCAGGTA +
Preference number: 5 (lower is better)
Translates to: AKEPLDVQSAHLTAAFRSALEDD*GWVIQV
Trigger: TACCTGAATTACCCAACCCAAGTCATCTTCAAGTGC...GGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp AGCATCAATTTTCTTCAGGGATGCAGCCCCAGGCTGGTCACATATGCTGTGGGTTCCCAACAGGGTTCTTaGAACAAAATGCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: SINFLQGCSPRLVTYAVGSQQGS*NKMPLQ
Trigger: CTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGA...ACCCACAGCATATGTGACCAGCCTGGGGCTGCATCCCTGAAGAAAATTGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR CAA 90 bp TGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCTCCCAACAGGGTTCTTaGAACAAAATGCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: CQGTTGCTICSSDSGLQISQQGS*NKMPLQ
Trigger: CTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGA...GATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp GCGCTGCAGGCTGGGAGGATTTCCAATCAGTCTTACAACACGGTCCATTTCCAGTTGCTTTCCTTCCTGTaGTCACTGTTACAGCCAGAA +
Preference number: 5 (lower is better)
Translates to: ALQAGRISNQSYNTVHFQLLSFL*SLLQPE
Trigger: TTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAA...CTGGAAATGGACCGTGTTGTAAGACTGATTGGAAATCCTCCCAGCCTGCAGCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS GCA 90 bp GGAGACATACTTCCTGGAGTTGTTGAACTTGAGGTCCATTGTTTCTaGTCTGCCACAGTCAAGGCCTGCAACTTGGTCTCTGCTCTTTTC +
Preference number: 5 (lower is better)
Translates to: GDILPGVVELEVHCF*SATVKACNLVSALF
Trigger: GAAAAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGCAGAGCAGAAACAATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CCA 90 bp TCTTTAAACACGCGGACGGGAAGCAAGGTTGGCCAGAAATCTAACTaGGCTGTCAGATTAAAGTTTGGTGCAATTGTGCTGTCAGCGAGG +
Preference number: 5 (lower is better)
Translates to: SLNTRTGSKVGQKSN*AVRLKFGAIVLSAR
Trigger: CCTCGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGCCCAGTTAGATTTCTGGCCAACCTTGCTTCCCGTCCGCGTGTTTAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224429.2
CDS-3UTR CAA 90 bp GCGCTGCAGGCTGGGAGGATTTCCAATCAGTCTTACAACACGGTCCATTTCCAGACATACTTCCTGGAGTaGTTGAACTTGAGGTCCATT +
Preference number: 5 (lower is better)
Translates to: ALQAGRISNQSYNTVHFQTYFLE*LNLRSI
Trigger: AATGGACCTCAAGTTCAACAACTCCAGGAAGTATGT...CTGGAAATGGACCGTGTTGTAAGACTGATTGGAAATCCTCCCAGCCTGCAGCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR CAA 90 bp TGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCTTGCTTTCCTTCCTGTaGTCACTGTTACAGCCAGAA +
Preference number: 5 (lower is better)
Translates to: CQGTTGCTICSSDSGLQILLSFL*SLLQPE
Trigger: TTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAA...GATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp GAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTACAGGACAACGGTCATaGCTTTCCTTCCTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: EPLDVQSAHLTAAFRSFGTGQRS*LSFLLS
Trigger: TGACAACAGGAAGGAAAGCAATGACCGTTGTCCTGT...ACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp GGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATAACAGGAATCAGTTaGCAGCACTTGAAGATGACT +
Preference number: 5 (lower is better)
Translates to: GCQGTTGCTICSSDSGLQITGIS*QHLKMT
Trigger: AGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTAT...CTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp TGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCTTGCTTTCCTTCCTGTaGTCACTGTTACAGCCAGAA +
Preference number: 5 (lower is better)
Translates to: CRGGCQGTTGCTICSSDSLLSFL*SLLQPE
Trigger: TTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAA...GCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp TTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACACAGGACAACGGTCATaGCTTTCCTTCCTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: FCRGGCQGTTGCTICSSDTGQRS*LSFLLS
Trigger: TGACAACAGGAAGGAAAGCAATGACCGTTGTCCTGT...GTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp TTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACGCACTTGAAGATGACTaGGGTTGGGTAATTCAGGTA +
Preference number: 5 (lower is better)
Translates to: FCRGGCQGTTGCTICSSDALEDD*GWVIQV
Trigger: TACCTGAATTACCCAACCCAAGTCATCTTCAAGTGC...GTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp TGCCAAGGAACCACTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCTGTACACAAACCCGATaGAGTAGGAATACAAAACCA +
Preference number: 5 (lower is better)
Translates to: CQGTTGCTICSSDSGLQICTQTR*SRNTKP
Trigger: TGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA...GATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp GTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTAAAACCATCTCCGAGTaGGAAGCATTGTGCAGTTTC +
Preference number: 5 (lower is better)
Translates to: VFCRGGCQGTTGCTICSSKTISE*EALCSF
Trigger: GAAACTGCACAATGCTTCCAACTCGGAGATGGTTTT...AGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp CATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCATCCCAACAGGGTTCTTaGAACAAAATGCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: HLELIKSLYSVEVDAKEPSQQGS*NKMPLQ
Trigger: CTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGA...TGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp CTGGATGTACAATCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATTACTTCCTGGAGTTGTaGAACTTGAGGTCCATTGTT +
Preference number: 5 (lower is better)
Translates to: LDVQSAHLTAAFRSFGLYYFLEL*NLRSIV
Trigger: AACAATGGACCTCAAGTTCAACAACTCCAGGAAGTA...ATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS-3UTR CAA 90 bp TCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGATAACAGGAATCAGTTaGCAGCACTTGAAGATGACT +
Preference number: 5 (lower is better)
Translates to: SAHLTAAFRSFGLYHKPLITGIS*QHLKMT
Trigger: AGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTAT...CAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp ATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAAAAAACCATCTCCGAGTaGGAAGCATTGTGCAGTTTC +
Preference number: 5 (lower is better)
Translates to: IKSLYSVEVDAKEPLDVQKTISE*EALCSF
Trigger: GAAACTGCACAATGCTTCCAACTCGGAGATGGTTTT...TTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATACAGGCTTTTGAT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp TCTGCTCATCTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGTGTACACAAACCCGATaGAGTAGGAATACAAAACCA +
Preference number: 5 (lower is better)
Translates to: SAHLTAAFRSFGLYHKPLCTQTR*SRNTKP
Trigger: TGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA...CAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAGATGAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp CCTGGAGGAACATGGCTTACCTGTTTTATCTTTCTGGCCTGCGTAGGTAGCTTTTGTACACAAACCCGATaGAGTAGGAATACAAAACCA +
Preference number: 5 (lower is better)
Translates to: PGGTWLTCFIFLACVGSFCTQTR*SRNTKP
Trigger: TGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA...AAAGCTACCTACGCAGGCCAGAAAGATAAAACAGGTAAGCCATGTTCCTCCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225396.2
CDS-3UTR CAA 90 bp CTTGATCATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGTCCCAACAGGGTTCTTaGAACAAAATGCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: LDHLELIKSLYSVEVDAKSQQGS*NKMPLQ
Trigger: CTGCAGTGGCATTTTGTTCAAAGAACCCTGTTGGGA...CTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp CTTGATCATTTGGAGTTGATCAAAAGCCTGTATTCTGTAGAGGTGGATGCCAAGACAGGACAACGGTCATaGCTTTCCTTCCTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: LDHLELIKSLYSVEVDAKTGQRS*LSFLLS
Trigger: TGACAACAGGAAGGAAAGCAATGACCGTTGTCCTGT...CTTGGCATCCACCTCTACAGAATACAGGCTTTTGATCAACTCCAAATGATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp CTGACAGCGGCCTTCAGATCCTTTGGTTTGTATCACAAGCCTTTGCAAAGTGAAATAACAGGAATCAGTTaGCAGCACTTGAAGATGACT +
Preference number: 5 (lower is better)
Translates to: LTAAFRSFGLYHKPLQSEITGIS*QHLKMT
Trigger: AGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTAT...TTCACTTTGCAAAGGCTTGTGATACAAACCAAAGGATCTGAAGGCCGCTGTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp GTATTCTGTAGAGGTGGATGCCAAGGAACCACTGGATGTACAATCTGCTCATCTTGTACACAAACCCGATaGAGTAGGAATACAAAACCA +
Preference number: 5 (lower is better)
Translates to: VFCRGGCQGTTGCTICSSCTQTR*SRNTKP
Trigger: TGGTTTTGTATTCCTACTCAATCGGGTTTGTGTACA...AGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACAGAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS TCA 90 bp TTGAGAAATATGCCAAGGACAACTAACAAGCCAGACCATATATACTaGAAAGTGAACGGCTTAGCAAAGAACAGGAAGGACAGGACAACG +
Preference number: 5 (lower is better)
Translates to: LRNMPRTTNKPDHIY*KVNGLAKNRKDRTT
Trigger: CGTTGTCCTGTCCTTCCTGTTCTTTGCTAAGCCGTTCACTTTTCAGTATATATGGTCTGGCTTGTTAGTTGTCCTTGGCATATTTCTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
CDS-3UTR CAA 90 bp TCCAGTGAAATGTTCAGAACATTGCTAGGAAGCACTTTCCTTCATACTGACTTTCTGGAGTTGTTGAACTaGAGGTCCATTGTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: SSEMFRTLLGSTFLHTDFLELLN*RSIVSA
Trigger: AGCAGAAACAATGGACCTCAAGTTCAACAACTCCAG...AAAGTCAGTATGAAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTCACTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS TCA 72 bp GGTTCACGCCCAGCACCACGACGTCCTCAACTGACTTaGTGTGCGGCGACATGGCCTGCGTTTTGGAGGGCA +
Preference number: 6 (lower is better)
Translates to: GSRPAPRRPQLT*CAATWPAFWRA
Trigger: TGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGTGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS GCA 72 bp ACGCCCAGCACCACGACGTCCTCAACTGACTTGATGTaGGGCGACATGGCCTGCGTTTTGGAGGGCACTGAG +
Preference number: 6 (lower is better)
Translates to: TPSTTTSSTDLM*GDMACVLEGTE
Trigger: CTCAGTGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS CAA 90 bp AACTTGCTGAGGTTCACGCCCAGCACCACGACGTCCTCAACTGACTaGATGTGCGGCGACATGGCCTGCGTTTTGGAGGGCACTGAGATG +
Preference number: 6 (lower is better)
Translates to: NLLRFTPSTTTSSTD*MCGDMACVLEGTEM
Trigger: CATCTCAGTGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGCAAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS GCA 72 bp ACGTCCTCAACTGACTTGATGTGCGGCGACATGGCCTaGGTTTTGGAGGGCACTGAGATGGAGACATACTTC +
Preference number: 6 (lower is better)
Translates to: TSSTDLMCGDMA*VLEGTEMETYF
Trigger: GAAGTATGTCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS CAA 90 bp ACGACGTCCTCAACTGACTTGATGTGCGGCGACATGGCCTGCGTTTaGGAGGGCACTGAGATGGAGACATACTTCCTGGAGTTGTTGAAC +
Preference number: 6 (lower is better)
Translates to: TTSSTDLMCGDMACV*EGTEMETYFLELLN
Trigger: GTTCAACAACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGTCGCCGCACATCAAGTCAGTTGAGGACGTCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS GCA 72 bp CTGCTCTGCCACAGTCAAGGCCTGCAACTTGGTCTCTaGTCTTTTCGGATGCTTCGTCCTGTCTTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: LLCHSQGLQLGL*SFRMLRPVFLL
Trigger: CAGAAGAAAGACAGGACGAAGCATCCGAAAAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGCAGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CAA 90 bp GCCTGCGTTTTGGAGGGCACTGAGATGGAGACATACTTCCTGGAGTaGTTGAACTTGAGGTCCATTGTTTCTGCTCTGCCACAGTCAAGG +
Preference number: 6 (lower is better)
Translates to: ACVLEGTEMETYFLE*LNLRSIVSALPQSR
Trigger: CCTTGACTGTGGCAGAGCAGAAACAATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCAAAACGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CAA 90 bp AAAACTCCAGCCACACAGATGAGAAACTGTGTGAGCTTGCTAAACTaGCTGAGGTTCACGCCCAGCACCACGACGTCCTCAACTGACTTG +
Preference number: 6 (lower is better)
Translates to: KTPATQMRNCVSLLN*LRFTPSTTTSSTDL
Trigger: CAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGCAAGTTTAGCAAGCTCACACAGTTTCTCATCTGTGTGGCTGGAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS TCA 72 bp CTGCAAGGTTGTACCGCTTTCCTTCTCCTTCTGTCCTaGGTGAGCTGTAGCTCGATTAGGCCAAATACGGAG +
Preference number: 6 (lower is better)
Translates to: LQGCTAFLLLLS*VSCSSIRPNTE
Trigger: CTCCGTATTTGGCCTAATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAGGAAAGCGGTACAACCTTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225461.2
ENSMUST00000225714.2
CDS CAA 72 bp CATTGTTTCTGCTCTGCCACAGTCAAGGCCTGCAACTaGGTCTCTGCTCTTTTCGGATGCTTCGTCCTGTCT +
Preference number: 6 (lower is better)
Translates to: HCFCSATVKACN*VSALFGCFVLS
Trigger: AGACAGGACGAAGCATCCGAAAAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGCAGAGCAGAAACAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CCA 72 bp ATTGTTTCTGCTCTGCCACAGTCAAGGCCTGCAACTTaGTCTCTGCTCTTTTCGGATGCTTCGTCCTGTCTT +
Preference number: 6 (lower is better)
Translates to: IVSALPQSRPAT*SLLFSDASSCL
Trigger: AAGACAGGACGAAGCATCCGAAAAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGCAGAGCAGAAACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CCA 72 bp ACGCGGACGGGAAGCAAGGTTGGCCAGAAATCTAACTaGGCTGTCAGATTAAAGTTTGGTGCAATTGTGCTG +
Preference number: 6 (lower is better)
Translates to: TRTGSKVGQKSN*AVRLKFGAIVL
Trigger: CAGCACAATTGCACCAAACTTTAATCTGACAGCCCAGTTAGATTTCTGGCCAACCTTGCTTCCCGTCCGCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224429.2
CDS CAA 72 bp GAGGGCACTGAGATGGAGACATACTTCCTGGAGTTGTaGAACTTGAGGTCCATTGTTTCTGCTCTGCCACAG +
Preference number: 6 (lower is better)
Translates to: EGTEMETYFLEL*NLRSIVSALPQ
Trigger: CTGTGGCAGAGCAGAAACAATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CAA 72 bp ACTGAGATGGAGACATACTTCCTGGAGTTGTTGAACTaGAGGTCCATTGTTTCTGCTCTGCCACAGTCAAGG +
Preference number: 6 (lower is better)
Translates to: TEMETYFLELLN*RSIVSALPQSR
Trigger: CCTTGACTGTGGCAGAGCAGAAACAATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021870.12
CDS CCA 72 bp CAGGGAGATAAGCATCACACCTGTCAGATTAAAGTTTaGTGCAATTGTGCTGTCAGCGAGGGTAAACCAGAT +
Preference number: 6 (lower is better)
Translates to: QGDKHHTCQIKV*CNCAVSEGKPD
Trigger: ATCTGGTTTACCCTCGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000224645.2
ENSMUST00000225396.2
ENSMUST00000225432.2
ENSMUST00000225568.2
CDS TCA 72 bp AGGTTTTTCCTGGTATTCTTCTCCTTCTGTCCTGAGTaGGCTGTAGCTCGATTAGGCCAAATACGGAGTAAA +
Preference number: 6 (lower is better)
Translates to: RFFLVFFSFCPE*AVARLGQIRSK
Trigger: TTTACTCCGTATTTGGCCTAATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAGAATACCAGGAAAAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225331.2
ENSMUST00000225432.2
CDS CAA 72 bp CATAACAGGAATCAGTTTGCAGCACTTGAAGATGACTaGGGTTGGGTAATTCAGGTAGCCCAAGGAAGTGTT +
Preference number: 6 (lower is better)
Translates to: HNRNQFAALEDD*GWVIQVAQGSV
Trigger: AACACTTCCTTGGGCTACCTGAATTACCCAACCCAAGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2
ENSMUST00000225568.2
CDS TCA 72 bp ATGCCAAGGACAACTAACAAGCCAGACCATATATACTaGAAAGTGAACGGCTTAGCAAAGAACAGGAAGGAC +
Preference number: 6 (lower is better)
Translates to: MPRTTNKPDHIY*KVNGLAKNRKD
Trigger: GTCCTTCCTGTTCTTTGCTAAGCCGTTCACTTTTCAGTATATATGGTCTGGCTTGTTAGTTGTCCTTGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021870.12
ENSMUST00000167513.3
ENSMUST00000225432.2