RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC35B2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037089

Ensembl transcript IDs: ENSMUST00000041353.7, ENSMUST00000223987.2, ENSMUST00000224341.2, ENSMUST00000224905.2, ENSMUST00000226086.2

Found 176 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACACGCTGTCACCCCAGCTATTTGGAAGGAAGAAGCAGGAGGGTTaGAAGTTCAAGGCTTGCATTGGGTGGTGGTGGCACATGCCTTTA +
Preference number: 1 (lower is better)
Translates to: YTLSPQLFGRKKQEG*KFKACIGWWWHMPL
Trigger: TAAAGGCATGTGCCACCACCACCCAATGCAAGCCTTGAACTTTCAACCCTCCTGCTTCTTCCTTCCAAATAGCTGGGGTGACAGCGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR CCA 90 bp TTTGCTTGGCCACCAGCAAGATTTCAGAGATTGGGGGAGGAGCTCTaGGTCACCTCTAACCAAACACCCACAGCTGTCATTTCCATGAAG +
Preference number: 1 (lower is better)
Translates to: FAWPPARFQRLGEEL*VTSNQTPTAVISMK
Trigger: CTTCATGGAAATGACAGCTGTGGGTGTTTGGTTAGAGGTGACCCAGAGCTCCTCCCCCAATCTCTGAAATCTTGCTGGTGGCCAAGCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR CCA 90 bp ATTTGGAAGGAAGAAGCAGGAGGGTTGAAAGTTCAAGGCTTGCATTaGGTGGTGGTGGCACATGCCTTTAACCCACTCTGTCCAGCACTC +
Preference number: 1 (lower is better)
Translates to: IWKEEAGGLKVQGLH*VVVAHAFNPLCPAL
Trigger: GAGTGCTGGACAGAGTGGGTTAAAGGCATGTGCCACCACCACCCAATGCAAGCCTTGAACTTTCAACCCTCCTGCTTCTTCCTTCCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR CCA 90 bp TTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATGACCAAGATTTCAGAGATTaGGGGAGGAGCTCTGGGTCA +
Preference number: 2 (lower is better)
Translates to: LSLLAQHHSHWPLGELHDQDFRD*GRSSGS
Trigger: TGACCCAGAGCTCCTCCCCCAATCTCTGAAATCTTG...GTCATGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CCA 90 bp AATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAATTGGGGGAGGAGCTCTaGGTCACCTCTAACCAAACA +
Preference number: 2 (lower is better)
Translates to: NSLPSWCLVASRVRAMSKLGEEL*VTSNQT
Trigger: TGTTTGGTTAGAGGTGACCCAGAGCTCCTCCCCCAA...TTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR CAA 90 bp CCAGCTATTTGGAAGGAAGAAGCAGGAGGGTTGAAAGTTCAAGGCTaGCATTGGGTGGTGGTGGCACATGCCTTTAACCCACTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: PAIWKEEAGGLKVQG*HWVVVAHAFNPLCP
Trigger: TGGACAGAGTGGGTTAAAGGCATGTGCCACCACCACCCAATGCAAGCCTTGAACTTTCAACCCTCCTGCTTCTTCCTTCCAAATAGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR TCA 90 bp AGCTGGGGGTGGGGGTGGCTGGACACTTCAATTCAACATATATCTAAGGTGAGTAGGCCAGCCTGGTATTaGGAGCAAGTTTCAGGACAG +
Preference number: 2 (lower is better)
Translates to: SWGWGWLDTSIQHISKVSRPAWY*EQVSGQ
Trigger: CTGTCCTGAAACTTGCTCTCAATACCAGGCTGGCCT...ACTCACCTTAGATATATGTTGAATTGAAGTGTCCAGCCACCCCCACCCCCAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR CCA 90 bp TCACTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAGGGCCCCAACTGGGCTaGGGGCCTTTGTCCCTTCTG +
Preference number: 2 (lower is better)
Translates to: SLLQFNQIRAKGDISKYQGPQLG*GPLSLL
Trigger: CAGAAGGGACAAAGGCCCCCAGCCCAGTTGGGGCCC...TTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR CAA 90 bp ATGCCCTGTGATAGCCTCACTCAAAGAAATCCTACTGACAAAATTTaGGAGAAAGCCAAGCATGGTGGTACACGCTGTCACCCCAGCTAT +
Preference number: 2 (lower is better)
Translates to: MPCDSLTQRNPTDKI*EKAKHGGTRCHPSY
Trigger: ATAGCTGGGGTGACAGCGTGTACCACCATGCTTGGCTTTCTCCAAAATTTTGTCAGTAGGATTTCTTTGAGTGAGGCTATCACAGGGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR TCA 90 bp TCACTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAACAAGGGTGCGTGCTATaGGCAAAGCCCTGGTGCTGG +
Preference number: 2 (lower is better)
Translates to: SLLQFNQIRAKGDISKYQQGCVL*AKPWCW
Trigger: CCAGCACCAGGGCTTTGCTCATAGCACGCACCCTTG...TTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGGGCCTTTGTCCCTTCTaGCACAGCACCATTCTCACT +
Preference number: 2 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGGLCPF*HSTILT
Trigger: AGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGCC...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CCA 90 bp CTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACGCAAAGCCCTGGTGCTaGTTTGCTTGGCCACCAGCA +
Preference number: 2 (lower is better)
Translates to: LLQFNQIRAKGDISKYQNAKPWC*FAWPPA
Trigger: TGCTGGTGGCCAAGCAAACCAGCACCAGGGCTTTGC...GTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTTTGGGGGAGGAGCTCTaGGTCACCTCTAACCAAACA +
Preference number: 2 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTLGEEL*VTSNQT
Trigger: TGTTTGGTTAGAGGTGACCCAGAGCTCCTCCCCCAA...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CCA 90 bp TGTGATAGCCTCACTCAAAGAAATCCTACTGACAAAATTTTGGAGAAAGCCAAGAAGGCTTGCATTGGGTaGTGGTGGCACATGCCTTTA +
Preference number: 2 (lower is better)
Translates to: CDSLTQRNPTDKILEKAKKACIG*WWHMPL
Trigger: TAAAGGCATGTGCCACCACCACCCAATGCAAGCCTT...CTTGGCTTTCTCCAAAATTTTGTCAGTAGGATTTCTTTGAGTGAGGCTATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR CCA 72 bp GTGGCACATGCCTTTAACCCACTCTGTCCAGCACTCTaGAGGCAGAGGCGTTTGGATTTGAGGCCAGCCTGG +
Preference number: 3 (lower is better)
Translates to: VAHAFNPLCPAL*RQRRLDLRPAW
Trigger: CCAGGCTGGCCTCAAATCCAAACGCCTCTGCCTCCAGAGTGCTGGACAGAGTGGGTTAAAGGCATGTGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR CAA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCAGCCCTGGTGCTGGTTaGCTTGGCCACCAGCAAGAT +
Preference number: 3 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACSPGAG*LGHQQD
Trigger: ATCTTGCTGGTGGCCAAGCAAACCAGCACCAGGGCT...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CAA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCGCAAGATTTCAGAGATaGGGGGAGGAGCTCTGGGTC +
Preference number: 3 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACARFQR*GEELWV
Trigger: GACCCAGAGCTCCTCCCCCAATCTCTGAAATCTTGC...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR-3UTR CAA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTGCAAGATTTCAGAGATaGGGGGAGGAGCTCTGGGTC +
Preference number: 3 (lower is better)
Translates to: PVNNSLPSWCLVASRVRAARFQR*GEELWV
Trigger: GACCCAGAGCTCCTCCCCCAATCTCTGAAATCTTGC...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR GCA 72 bp TGCGCGCGCGCGCGCGTGGACGTGCGCATGAACACATaGGTGTGTACAGTGAACTTTCATTTCAATACAGGT +
Preference number: 3 (lower is better)
Translates to: CARARVDVRMNT*VCTVNFHFNTG
Trigger: ACCTGTATTGAAATGAAAGTTCACTGTACACACGCATGTGTTCATGCGCACGTCCACGCGCGCGCGCGCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
3UTR TCA 72 bp ACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATaGCCTGTAAACAATTCTCTTCCCAGCTGGTGCCTG +
Preference number: 3 (lower is better)
Translates to: TAPFSLAPRGTA*PVNNSLPSWCL
Trigger: CAGGCACCAGCTGGGAAGAGAATTGTTTACAGGTCATGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR GCA 72 bp AAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTaGTGTATGCTGATACTGAGCCAGTGCCTCAGAAGA +
Preference number: 3 (lower is better)
Translates to: KAKEAASRAPIL*CMLILSQCLRR
Trigger: TCTTCTGAGGCACTGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR CCA 72 bp GCTGGTTTGCTTGGCCACCAGCAAGATTTCAGAGATTaGGGGAGGAGCTCTGGGTCACCTCTAACCAAACAC +
Preference number: 3 (lower is better)
Translates to: AGLLGHQQDFRD*GRSSGSPLTKH
Trigger: GTGTTTGGTTAGAGGTGACCCAGAGCTCCTCCCCCAATCTCTGAAATCTTGCTGGTGGCCAAGCAAACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR TCA 72 bp TCACCCCAGCTATTTGGAAGGAAGAAGCAGGAGGGTTaGAAGTTCAAGGCTTGCATTGGGTGGTGGTGGCAC +
Preference number: 3 (lower is better)
Translates to: SPQLFGRKKQEG*KFKACIGWWWH
Trigger: GTGCCACCACCACCCAATGCAAGCCTTGAACTTTCAACCCTCCTGCTTCTTCCTTCCAAATAGCTGGGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR CCA 72 bp TCTAACCAAACACCCACAGCTGTCATTTCCATGAAGTaGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGG +
Preference number: 3 (lower is better)
Translates to: SNQTPTAVISMK*GLLRQKRLPPG
Trigger: CCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTGGTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR CCA 72 bp GAAGAAGCAGGAGGGTTGAAAGTTCAAGGCTTGCATTaGGTGGTGGTGGCACATGCCTTTAACCCACTCTGT +
Preference number: 3 (lower is better)
Translates to: EEAGGLKVQGLH*VVVAHAFNPLC
Trigger: ACAGAGTGGGTTAAAGGCATGTGCCACCACCACCCAATGCAAGCCTTGAACTTTCAACCCTCCTGCTTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR CAA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGAGCCCTGGTGCTGGTTaGCTTGGCCACCAGCAAGAT +
Preference number: 3 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGSPGAG*LGHQQD
Trigger: ATCTTGCTGGTGGCCAAGCAAACCAGCACCAGGGCT...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR TCA 72 bp GGTGGCTGGACACTTCAATTCAACATATATCTAAGGTaGGTTGGCTCCCACTCTGAATGCCCTGTGATAGCC +
Preference number: 3 (lower is better)
Translates to: GGWTLQFNIYLR*VGSHSECPVIA
Trigger: GGCTATCACAGGGCATTCAGAGTGGGAGCCAACTCACCTTAGATATATGTTGAATTGAAGTGTCCAGCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
3UTR-3UTR CAA 90 bp GAAATCCTACTGACAAAATTTTGGAGAAAGCCAAGCATGGTGGTACACGCTGTCGAAGAAGCAGGAGGGTaGAAAGTTCAAGGCTTGCAT +
Preference number: 3 (lower is better)
Translates to: EILLTKFWRKPSMVVHAVEEAGG*KVQGLH
Trigger: ATGCAAGCCTTGAACTTTCAACCCTCCTGCTTCTTC...GACAGCGTGTACCACCATGCTTGGCTTTCTCCAAAATTTTGTCAGTAGGATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
CDS-3UTR TCA 90 bp GAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTACATGGGTGCACCATaGCGGGGCTGCTTGCGCAGG +
Preference number: 4 (lower is better)
Translates to: EVGALKAKEAASRAPILCYMGAP*RGCLRR
Trigger: CCTGCGCAAGCAGCCCCGTCATGGTGCACCCATGTA...GCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCGCTCTCCTGGTGATGTaGCTGTGGCCCCGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: EVGALKAKEAASRAPILCALLVM*LWPRSC
Trigger: GCAGCTACGGGGCCACAGCCACATCACCAGGAGAGC...GCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGCTCTCCTGGTGATGTaGCTGTGGCCCCGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAALLVM*LWPRSC
Trigger: GCAGCTACGGGGCCACAGCCACATCACCAGGAGAGC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp TTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATGACGCTCTCCTGGTGATGTaGCTGTGGCCCCGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: LSLLAQHHSHWPLGELHDALLVM*LWPRSC
Trigger: GCAGCTACGGGGCCACAGCCACATCACCAGGAGAGC...GTCATGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGCCTTCGCCAGCACCTaGGTAGGGAAGCTGACGAAC +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAAFAST*VGKLTN
Trigger: GTTCGTCAGCTTCCCTACCCAGGTGCTGGCGAAGGC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGTACCGGTACATGGGTaGACCATGACGGGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAVPVHG*TMTGLL
Trigger: AAGCAGCCCCGTCATGGTGCACCCATGTACCGGTAC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGGTACTGGGGGCTCAGTaGGCACAGCCTTCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: GALKAKEAASRAPILCCMVLGAQ*AQPSFP
Trigger: GGGGAAAGAAGGCTGTGCCCACTGAGCCCCCAGTAC...CATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp AATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAATACATGGGTGCACCATaGCGGGGCTGCTTGCGCAGG +
Preference number: 4 (lower is better)
Translates to: NSLPSWCLVASRVRAMSKYMGAP*RGCLRR
Trigger: CCTGCGCAAGCAGCCCCGTCATGGTGCACCCATGTA...TTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp AAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTCCCAGTGTTCATAGCTaGGCCGGGACACCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: KWGLLRQKRLPPGLQSSAPSVHS*AGTPAF
Trigger: GAAAGCTGGTGTCCCGGCGCAGCTATGAACACTGGG...AGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTAGCGCAAACTCACTGTaGCGCCCCATGAAGCGTGCC +
Preference number: 4 (lower is better)
Translates to: PVNNSLPSWCLVASRVRASANSL*RPMKRA
Trigger: GGCACGCTTCATGGGGCGGCACAGTGAGTTTGCGCT...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGAGGAGTACCGGTACATaGGTGCACCATGACGGGGCT +
Preference number: 4 (lower is better)
Translates to: GALKAKEAASRAPILCCMRSTGT*VHHDGA
Trigger: AGCCCCGTCATGGTGCACCCATGTACCGGTACTCCT...CATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCAGAGAGTGTGGTGGCTaGAGAGCTTCTAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: EVGALKAKEAASRAPILCRECGG*RASRLW
Trigger: CCAGAGCCTAGAAGCTCTCCAGCCACCACACTCTCT...GCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCGAAATGCTCTCCTGGTaGTGTGGCTGTGGCCCCGTA +
Preference number: 4 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACEMLSW*CGCGPV
Trigger: TACGGGGCCACAGCCACATCACCAGGAGAGCATTTC...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGGCATCCTGCCAATTTaGGGTGAAGCTGTCGAAAGC +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAGILPI*GEAVES
Trigger: GCTTTCGACAGCTTCACCTCAAATTGGCAGGATGCC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCACCTCATCAGGAGCCTTaGGCTCATTGCCAAACACAC +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAPHQEP*AHCQTH
Trigger: GTGTGTTTGGCAATGAGCCCAAGGCTCCTGATGAGG...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp AAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGAGAGGAGGAGAGCATaGAGCGCAAACTCACTGTGC +
Preference number: 4 (lower is better)
Translates to: KWGLLRQKRLPPGLQSSAERRRA*SANSLC
Trigger: GCACAGTGAGTTTGCGCTCCATGCTCTCCTCCTCTC...AGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp AAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTCAAAGGCGGAGCAGATaGAGAGGAGGAGAGCATGGA +
Preference number: 4 (lower is better)
Translates to: KWGLLRQKRLPPGLQSSAQRRSR*RGGEHG
Trigger: TCCATGCTCTCCTCCTCTCCATCTGCTCCGCCTTTG...AGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCAAAGGCGGAGCAGATaGAGAGGAGGAGAGCATGGA +
Preference number: 4 (lower is better)
Translates to: GALKAKEAASRAPILCCMQRRSR*RGGEHG
Trigger: TCCATGCTCTCCTCCTCTCCATCTGCTCCGCCTTTG...CATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCAGAAATGCTCTCCTGGTaGTGTGGCTGTGGCCCCGTA +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPEMLSW*CGCGPV
Trigger: TACGGGGCCACAGCCACATCACCAGGAGAGCATTTC...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGCGCTTTCCCATCATCATaGCAGGGATCACCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: FSSQLVPGSLKGACYEQSAFPSS*QGSPWR
Trigger: CCTCCAAGGTGATCCCTGTCATGATGATGGGAAAGC...GCTTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTAGGCATCCTGCCAATTTaGGGTGAAGCTGTCGAAAGC +
Preference number: 4 (lower is better)
Translates to: WGLLRQKRLPPGLQSSAVGILPI*GEAVES
Trigger: GCTTTCGACAGCTTCACCTCAAATTGGCAGGATGCC...TACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTACAATGGTGTAGAAGATaGAGAGCTGCCCAAAGGCGG +
Preference number: 4 (lower is better)
Translates to: WGLLRQKRLPPGLQSSAVQWCRR*RAAQRR
Trigger: CCGCCTTTGGGCAGCTCTTCATCTTCTACACCATTG...TACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATGACCAATGGTGTAGAAGATaGAGAGCTGCCCAAAGGCGG +
Preference number: 4 (lower is better)
Translates to: LSLLAQHHSHWPLGELHDQWCRR*RAAQRR
Trigger: CCGCCTTTGGGCAGCTCTTCATCTTCTACACCATTG...GTCATGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCCTGTGGCCCCGTAGCTaGCAGTCATCACTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACLWPRS*QSSLFP
Trigger: AGGAAAGAGTGATGACTGGCAGCTACGGGGCCACAG...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATGGGAGTCTGTGAAATaGTCTCCTGGTGATGTGGCT +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAWESVK*SPGDVA
Trigger: AGCCACATCACCAGGAGAGCATTTCACAGACTCCCA...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCACCCAGTGTTCATAGCTaGGCCGGGACACCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPPSVHS*AGTPAF
Trigger: GAAAGCTGGTGTCCCGGCGCAGCTATGAACACTGGG...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp ACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCACTGGTGATGTGGCTGTaGCCCCGTAGCTGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: TAVISMKWGLLRQKRLPPLVMWL*PRSCQS
Trigger: TGACTGGCAGCTACGGGGCCACAGCCACATCACCAG...TGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
3UTR CAA 72 bp AAGGGTGCGTGCTATGAGCAAAGCCCTGGTGCTGGTTaGCTTGGCCACCAGCAAGATTTCAGAGATTGGGGG +
Preference number: 4 (lower is better)
Translates to: KGACYEQSPGAG*LGHQQDFRDWG
Trigger: CCCCCAATCTCTGAAATCTTGCTGGTGGCCAAGCAAACCAGCACCAGGGCTTTGCTCATAGCACGCACCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp GAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCGCTGCTAAGCACATTTaGCAGACTGGCAAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: EVGALKAKEAASRAPILCAAKHI*QTGKGV
Trigger: TACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGC...GCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCAGGAAGCAGAGACCCCTaGCTGTCTCCAGGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPGSRDP*LSPGSS
Trigger: AGAACTACCTGGAGACAGGCAGGGGTCTCTGCTTCC...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGTCATCACTCTTTCCTaGAGTATGCCCCAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAVITLS*SMPQVR
Trigger: TCTGACTTGGGGCATACTGCAGGAAAGAGTGATGAC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCACTGTGGCCCCGTAGCTaGCAGTCATCACTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPLWPRS*QSSLFP
Trigger: AGGAAAGAGTGATGACTGGCAGCTACGGGGCCACAG...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGCTGACGAACTTAAGTaGTTCATACTGGCACCAGCT +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAADELK*FILAPA
Trigger: AGCTGGTGCCAGTATGAAGCACTTAAGTTCGTCAGC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp TTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGCGCAAACAGGGCATCCTaGCAATTTGAGGTGAAGCTG +
Preference number: 4 (lower is better)
Translates to: FSSQLVPGSLKGACYEQSANRAS*QFEVKL
Trigger: CAGCTTCACCTCAAATTGGCAGGATGCCCTGTTTGC...GCTTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CTGTATGCTGATACTGAGCCAGTGCCTCAGAAGATGAGGGTCTTTACTGCACTGAGCGCAAACTCACTGTaGCGCCCCATGAAGCGTGCC +
Preference number: 4 (lower is better)
Translates to: LYADTEPVPQKMRVFTALSANSL*RPMKRA
Trigger: GGCACGCTTCATGGGGCGGCACAGTGAGTTTGCGCT...CAGTGCAGTAAAGACCCTCATCTTCTGAGGCACTGGCTCAGTATCAGCATACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTCCTCATCAGGAGCCTTaGGCTCATTGCCAAACACAC +
Preference number: 4 (lower is better)
Translates to: PVNNSLPSWCLVASRVRAPHQEP*AHCQTH
Trigger: GTGTGTTTGGCAATGAGCCCAAGGCTCCTGATGAGG...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCCCTCATCAGGAGCCTTaGGCTCATTGCCAAACACAC +
Preference number: 4 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACPHQEP*AHCQTH
Trigger: GTGTGTTTGGCAATGAGCCCAAGGCTCCTGATGAGG...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCAGCACATTTGACAGACTaGCAAAGGAGTACCGGTACA +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAAHLTD*QRSTGT
Trigger: TGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGC...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CTGTATGCTGATACTGAGCCAGTGCCTCAGAAGATGAGGGTCTTTACTGCACTGGCCTTCGCCAGCACCTaGGTAGGGAAGCTGACGAAC +
Preference number: 4 (lower is better)
Translates to: LYADTEPVPQKMRVFTALAFAST*VGKLTN
Trigger: GTTCGTCAGCTTCCCTACCCAGGTGCTGGCGAAGGC...CAGTGCAGTAAAGACCCTCATCTTCTGAGGCACTGGCTCAGTATCAGCATACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CAAACACCCACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGGTACTGGGGGCTCAGTaGGCACAGCCTTCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: QTPTAVISMKWGLLRQKRVLGAQ*AQPSFP
Trigger: GGGGAAAGAAGGCTGTGCCCACTGAGCCCCCAGTAC...CCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp CAAACACCCACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGGAAATGCTCTCCTGGTaGTGTGGCTGTGGCCCCGTA +
Preference number: 4 (lower is better)
Translates to: QTPTAVISMKWGLLRQKREMLSW*CGCGPV
Trigger: TACGGGGCCACAGCCACATCACCAGGAGAGCATTTC...CCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTGAAACTGGGAGTCTGTaGAATGCTCTCCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: PVNNSLPSWCLVASRVRAETGSL*NALLVM
Trigger: CATCACCAGGAGAGCATTTCACAGACTCCCAGTTTC...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp AAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGCTGCTAAGCACATTTaGCAGACTGGCAAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: KWGLLRQKRLPPGLQSSAAAKHI*QTGKGV
Trigger: TACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGC...AGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCAGCTTTCCCATCATCATaGCAGGGATCACCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPAFPSS*QGSPWR
Trigger: CCTCCAAGGTGATCCCTGTCATGATGATGGGAAAGC...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp GCCTTTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCACATCATCTGCACCGATaGCATCTTATAGGCAAACAG +
Preference number: 4 (lower is better)
Translates to: AFVPSGTAPFSLAPRGTAHHLHR*HLIGKQ
Trigger: CTGTTTGCCTATAAGATGTCATCGGTGCAGATGATG...TGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp ACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGAAGCAGAGACCCCTaGCTGTCTCCAGGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: TAVISMKWGLLRQKRLPPGSRDP*LSPGSS
Trigger: AGAACTACCTGGAGACAGGCAGGGGTCTCTGCTTCC...TGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp TTGGAGAAAGCCAAGCATGGTGGTACACGCTGTCACCCCAGCTATTTGGAAGGAGGAAGCAGAGACCCCTaGCTGTCTCCAGGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: LEKAKHGGTRCHPSYLEGGSRDP*LSPGSS
Trigger: AGAACTACCTGGAGACAGGCAGGGGTCTCTGCTTCC...TCCTTCCAAATAGCTGGGGTGACAGCGTGTACCACCATGCTTGGCTTTCTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
CDS-3UTR GCA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCGAGCCTTGGGCTCATTaGCAAACACACAGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACEPWAH*QTHRLS
Trigger: TGAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTC...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp TTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGCGTCATCACTCTTTCCTaGAGTATGCCCCAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: FSSQLVPGSLKGACYEQSVITLS*SMPQVR
Trigger: TCTGACTTGGGGCATACTGCAGGAAAGAGTGATGAC...GCTTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp ACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCACTGTGGCCCCGTAGCTaGCAGTCATCACTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: TAVISMKWGLLRQKRLPPLWPRS*QSSLFP
Trigger: AGGAAAGAGTGATGACTGGCAGCTACGGGGCCACAG...TGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CTGTATGCTGATACTGAGCCAGTGCCTCAGAAGATGAGGGTCTTTACTGCACTGGTACCGGTACATGGGTaGACCATGACGGGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LYADTEPVPQKMRVFTALVPVHG*TMTGLL
Trigger: AAGCAGCCCCGTCATGGTGCACCCATGTACCGGTAC...CAGTGCAGTAAAGACCCTCATCTTCTGAGGCACTGGCTCAGTATCAGCATACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTGCAAACAGGGCATCCTaGCAATTTGAGGTGAAGCTG +
Preference number: 4 (lower is better)
Translates to: PVNNSLPSWCLVASRVRAANRAS*QFEVKL
Trigger: CAGCTTCACCTCAAATTGGCAGGATGCCCTGTTTGC...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp ACCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCGCTGCTAAGCACATTTaGCAGACTGGCAAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: TCKQFSSQLVPGSLKGACAAKHI*QTGKGV
Trigger: TACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGC...GCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTACCTGCCAATTTGAGGTaGAGCTGTCGAAAGCAATAT +
Preference number: 4 (lower is better)
Translates to: WGLLRQKRLPPGLQSSAVPANLR*SCRKQY
Trigger: ATATTGCTTTCGACAGCTTCACCTCAAATTGGCAGG...TACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp ACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCACAATGGTGTAGAAGATaGAGAGCTGCCCAAAGGCGG +
Preference number: 4 (lower is better)
Translates to: TAVISMKWGLLRQKRLPPQWCRR*RAAQRR
Trigger: CCGCCTTTGGGCAGCTCTTCATCTTCTACACCATTG...TGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCAGAGCCTTGGGCTCATTaGCAAACACACAGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPEPWAH*QTHRLS
Trigger: TGAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTC...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp TTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATGACTTAAGTGCTTCATACTaGCACCAGCTGCTAAGCACA +
Preference number: 4 (lower is better)
Translates to: LSLLAQHHSHWPLGELHDLSASY*HQLLST
Trigger: TGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTTAA...GTCATGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CAAACACCCACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCAAAGGCGGAGCAGATaGAGAGGAGGAGAGCATGGA +
Preference number: 4 (lower is better)
Translates to: QTPTAVISMKWGLLRQKRQRRSR*RGGEHG
Trigger: TCCATGCTCTCCTCCTCTCCATCTGCTCCGCCTTTG...CCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp GGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGAGGATGGCAATAGCCTaGCGTAGAGTCATGATGATA +
Preference number: 4 (lower is better)
Translates to: GALKAKEAASRAPILCCMRMAIA*RRVMMI
Trigger: TATCATCATGACTCTACGCCAGGCTATTGCCATCCT...CATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp AAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTAGGATGGCAATAGCCTaGCGTAGAGTCATGATGATA +
Preference number: 4 (lower is better)
Translates to: KWGLLRQKRLPPGLQSSARMAIA*RRVMMI
Trigger: TATCATCATGACTCTACGCCAGGCTATTGCCATCCT...AGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp CTGTATGCTGATACTGAGCCAGTGCCTCAGAAGATGAGGGTCTTTACTGCACTGGCTTTCCCATCATCATaGCAGGGATCACCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: LYADTEPVPQKMRVFTALAFPSS*QGSPWR
Trigger: CCTCCAAGGTGATCCCTGTCATGATGATGGGAAAGC...CAGTGCAGTAAAGACCCTCATCTTCTGAGGCACTGGCTCAGTATCAGCATACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTAGACAGGAGAATAAATTaGCCCCAAACATCATCTGCA +
Preference number: 4 (lower is better)
Translates to: WGLLRQKRLPPGLQSSAVDRRIN*PQTSSA
Trigger: TGCAGATGATGTTTGGGGTCAATTTATTCTCCTGTC...TACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp GGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGGACAGGAGAATAAATTaGCCCCAAACATCATCTGCA +
Preference number: 4 (lower is better)
Translates to: GALKAKEAASRAPILCCMDRRIN*PQTSSA
Trigger: TGCAGATGATGTTTGGGGTCAATTTATTCTCCTGTC...CATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp GAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCGTAGTGAGCCTACTGTaGAAAGACAGGAGAATAAAT +
Preference number: 4 (lower is better)
Translates to: EVGALKAKEAASRAPILCVVSLL*KDRRIN
Trigger: ATTTATTCTCCTGTCTTTTCACAGTAGGCTCACTAC...GCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp TGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATTGGGAGTCTGTGAAATaGTCTCCTGGTGATGTGGCT +
Preference number: 4 (lower is better)
Translates to: CKQFSSQLVPGSLKGACYWESVK*SPGDVA
Trigger: AGCCACATCACCAGGAGAGCATTTCACAGACTCCCA...ATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp AATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGCTGACGAACTTAAGTaGTTCATACTGGCACCAGCT +
Preference number: 4 (lower is better)
Translates to: NSLPSWCLVASRVRAMSKADELK*FILAPA
Trigger: AGCTGGTGCCAGTATGAAGCACTTAAGTTCGTCAGC...TTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp TGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGCAAACAGGGCATCCTaGCAATTTGAGGTGAAGCTG +
Preference number: 4 (lower is better)
Translates to: CKQFSSQLVPGSLKGACYANRAS*QFEVKL
Trigger: CAGCTTCACCTCAAATTGGCAGGATGCCCTGTTTGC...ATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTTTAAGTGCTTCATACTaGCACCAGCTGCTAAGCACA +
Preference number: 4 (lower is better)
Translates to: PVNNSLPSWCLVASRVRALSASY*HQLLST
Trigger: TGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTTAA...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCACCTGCCAATTTGAGGTaGAGCTGTCGAAAGCAATAT +
Preference number: 4 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPPANLR*SCRKQY
Trigger: ATATTGCTTTCGACAGCTTCACCTCAAATTGGCAGG...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGGTACTGGGGGCTCAGTaGGCACAGCCTTCTTTCCCC +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGVLGAQ*AQPSFP
Trigger: GGGGAAAGAAGGCTGTGCCCACTGAGCCCCCAGTAC...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp ACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCACCTGCCAATTTGAGGTaGAGCTGTCGAAAGCAATAT +
Preference number: 4 (lower is better)
Translates to: TAVISMKWGLLRQKRLPPPANLR*SCRKQY
Trigger: ATATTGCTTTCGACAGCTTCACCTCAAATTGGCAGG...TGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATCATCATCTGCACCGATaGCATCTTATAGGCAAACAG +
Preference number: 4 (lower is better)
Translates to: CKQFSSQLVPGSLKGACYHHLHR*HLIGKQ
Trigger: CTGTTTGCCTATAAGATGTCATCGGTGCAGATGATG...ATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGCCCAGTGTTCATAGCTaGGCCGGGACACCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGPSVHS*AGTPAF
Trigger: GAAAGCTGGTGTCCCGGCGCAGCTATGAACACTGGG...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CAAACACCCACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGGCACATTTGACAGACTaGCAAAGGAGTACCGGTACA +
Preference number: 4 (lower is better)
Translates to: QTPTAVISMKWGLLRQKRAHLTD*QRSTGT
Trigger: TGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGC...CCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp TGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATAGGATGGCAATAGCCTaGCGTAGAGTCATGATGATA +
Preference number: 4 (lower is better)
Translates to: CKQFSSQLVPGSLKGACYRMAIA*RRVMMI
Trigger: TATCATCATGACTCTACGCCAGGCTATTGCCATCCT...ATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CGCATGAACACATGCGTGTGTACAGTGAACTTTCATTTCAATACAGGTGTTGAAGACTGGGCTGTGTCCTaGAGACCCGAGGCACAGAAG +
Preference number: 4 (lower is better)
Translates to: RMNTCVCTVNFHFNTGVEDWAVS*RPEAQK
Trigger: CTTCTGTGCCTCGGGTCTCCAGGACACAGCCCAGTC...TTCAACACCTGTATTGAAATGAAAGTTCACTGTACACACGCATGTGTTCATGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
CDS-3UTR TCA 90 bp AATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGTAGTGAGCCTACTGTaGAAAGACAGGAGAATAAAT +
Preference number: 4 (lower is better)
Translates to: NSLPSWCLVASRVRAMSKVVSLL*KDRRIN
Trigger: ATTTATTCTCCTGTCTTTTCACAGTAGGCTCACTAC...TTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGGGAAGCAGAGACCCCTaGCTGTCTCCAGGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGGSRDP*LSPGSS
Trigger: AGAACTACCTGGAGACAGGCAGGGGTCTCTGCTTCC...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTCTGGTGATGTGGCTGTaGCCCCGTAGCTGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTLVMWL*PRSCQS
Trigger: TGACTGGCAGCTACGGGGCCACAGCCACATCACCAG...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGGAGAGGAGGAGAGCATaGAGCGCAAACTCACTGTGC +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGERRRA*SANSLC
Trigger: GCACAGTGAGTTTGCGCTCCATGCTCTCCTCCTCTC...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CGCATGAACACATGCGTGTGTACAGTGAACTTTCATTTCAATACAGGTGTTGAAGGAAGCAGAGACCCCTaGCTGTCTCCAGGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: RMNTCVCTVNFHFNTGVEGSRDP*LSPGSS
Trigger: AGAACTACCTGGAGACAGGCAGGGGTCTCTGCTTCC...TTCAACACCTGTATTGAAATGAAAGTTCACTGTACACACGCATGTGTTCATGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
CDS-3UTR GCA 90 bp TCCCACTCTGAATGCCCTGTGATAGCCTCACTCAAAGAAATCCTACTGACAAAAGAGCCTTGGGCTCATTaGCAAACACACAGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SHSECPVIASLKEILLTKEPWAH*QTHRLS
Trigger: TGAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTC...TTTTGTCAGTAGGATTTCTTTGAGTGAGGCTATCACAGGGCATTCAGAGTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
CDS-3UTR CCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTAGGAGTACCGGTACATaGGTGCACCATGACGGGGCT +
Preference number: 4 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTRSTGT*VHHDGA
Trigger: AGCCCCGTCATGGTGCACCCATGTACCGGTACTCCT...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp CAAACACCCACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGGTAGTGAGCCTACTGTaGAAAGACAGGAGAATAAAT +
Preference number: 4 (lower is better)
Translates to: QTPTAVISMKWGLLRQKRVVSLL*KDRRIN
Trigger: ATTTATTCTCCTGTCTTTTCACAGTAGGCTCACTAC...CCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACGTACCGGTACATGGGTaGACCATGACGGGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LLQFNQIRAKGDISKYQNVPVHG*TMTGLL
Trigger: AAGCAGCCCCGTCATGGTGCACCCATGTACCGGTAC...GTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp TGTACAGTGAACTTTCATTTCAATACAGGTGTTGAAGGAAGCGCTGGAAGTTCACCTCATCAGGAGCCTTaGGCTCATTGCCAAACACAC +
Preference number: 4 (lower is better)
Translates to: CTVNFHFNTGVEGSAGSSPHQEP*AHCQTH
Trigger: GTGTGTTTGGCAATGAGCCCAAGGCTCCTGATGAGG...TGAACTTCCAGCGCTTCCTTCAACACCTGTATTGAAATGAAAGTTCACTGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
CDS-3UTR CCA 90 bp GTGATAGCCTCACTCAAAGAAATCCTACTGACAAAATTTTGGAGAAAGCCAAGCCCTCATCAGGAGCCTTaGGCTCATTGCCAAACACAC +
Preference number: 4 (lower is better)
Translates to: VIASLKEILLTKFWRKPSPHQEP*AHCQTH
Trigger: GTGTGTTTGGCAATGAGCCCAAGGCTCCTGATGAGG...GCTTGGCTTTCTCCAAAATTTTGTCAGTAGGATTTCTTTGAGTGAGGCTATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
CDS-3UTR CCA 90 bp CTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACAGGAGTACCGGTACATaGGTGCACCATGACGGGGCT +
Preference number: 4 (lower is better)
Translates to: LLQFNQIRAKGDISKYQNRSTGT*VHHDGA
Trigger: AGCCCCGTCATGGTGCACCCATGTACCGGTACTCCT...GTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTAGAGAGTGTGGTGGCTaGAGAGCTTCTAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTRECGG*RASRLW
Trigger: CCAGAGCCTAGAAGCTCTCCAGCCACCACACTCTCT...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGAGAGGAGGAGAGCATaGAGCGCAAACTCACTGTGC +
Preference number: 4 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTERRRA*SANSLC
Trigger: GCACAGTGAGTTTGCGCTCCATGCTCTCCTCCTCTC...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp TGTACAGTGAACTTTCATTTCAATACAGGTGTTGAAGGAAGCGCTGGAAGTTCAGAGCCTTGGGCTCATTaGCAAACACACAGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: CTVNFHFNTGVEGSAGSSEPWAH*QTHRLS
Trigger: TGAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTC...TGAACTTCCAGCGCTTCCTTCAACACCTGTATTGAAATGAAAGTTCACTGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
CDS-3UTR GCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGGTCATCACTCTTTCCTaGAGTATGCCCCAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGVITLS*SMPQVR
Trigger: TCTGACTTGGGGCATACTGCAGGAAAGAGTGATGAC...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGGCTGACGAACTTAAGTaGTTCATACTGGCACCAGCT +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGADELK*FILAPA
Trigger: AGCTGGTGCCAGTATGAAGCACTTAAGTTCGTCAGC...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp CTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACAGAGAGTGTGGTGGCTaGAGAGCTTCTAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: LLQFNQIRAKGDISKYQNRECGG*RASRLW
Trigger: CCAGAGCCTAGAAGCTCTCCAGCCACCACACTCTCT...GTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGAAACTGGGAGTCTGTaGAATGCTCTCCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTETGSL*NALLVM
Trigger: CATCACCAGGAGAGCATTTCACAGACTCCCAGTTTC...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp TCACTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAGGCATCCTGCCAATTTaGGGTGAAGCTGTCGAAAGC +
Preference number: 4 (lower is better)
Translates to: SLLQFNQIRAKGDISKYQGILPI*GEAVES
Trigger: GCTTTCGACAGCTTCACCTCAAATTGGCAGGATGCC...TTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR TCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGCATCATCTGCACCGATaGCATCTTATAGGCAAACAG +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGHHLHR*HLIGKQ
Trigger: CTGTTTGCCTATAAGATGTCATCGGTGCAGATGATG...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTTGGGAGTCTGTGAAATaGTCTCCTGGTGATGTGGCT +
Preference number: 4 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTWESVK*SPGDVA
Trigger: AGCCACATCACCAGGAGAGCATTTCACAGACTCCCA...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp ATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTGGGTTAAGTGCTTCATACTaGCACCAGCTGCTAAGCACA +
Preference number: 4 (lower is better)
Translates to: IRAKGDISKYQNLGRNTGLSASY*HQLLST
Trigger: TGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTTAA...CCCAGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR GCA 90 bp CTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACGAGCCTTGGGCTCATTaGCAAACACACAGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: LLQFNQIRAKGDISKYQNEPWAH*QTHRLS
Trigger: TGAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTC...GTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CCA 90 bp TCACTGCTGCAGTTTAATCAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAGCACATTTGACAGACTaGCAAAGGAGTACCGGTACA +
Preference number: 4 (lower is better)
Translates to: SLLQFNQIRAKGDISKYQAHLTD*QRSTGT
Trigger: TGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGC...TTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTGATTAAACTGCAGCAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 90 bp GCGGAAGAGCCACAGCTGTGTCCAGGACTGCGGAGGGGCTTCGGGTaGCTCTCCACCTGCTCCCAAGGAAGGGAGTGTGGCGAGTACCAC +
Preference number: 5 (lower is better)
Translates to: AEEPQLCPGLRRGFG*LSTCSQGRECGEYH
Trigger: GTGGTACTCGCCACACTCCCTTCCTTGGGAGCAGGTGGAGAGTCACCCGAAGCCCCTCCGCAGTCCTGGACACAGCTGTGGCTCTTCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224905.2
ENSMUST00000226086.2
CDS GCA 90 bp GCTGTGTCCTGGAGACCCGAGGCACAGAAGACCAGCTTCAGGACCTaGCAAGACGGGGTGGATTCCGCTGTCTCTGTCCGCGGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: AVSWRPEAQKTSFRT*QDGVDSAVSVRGAR
Trigger: CCTGGCTCCGCGGACAGAGACAGCGGAATCCACCCCGTCTTGGCAGGTCCTGAAGCTGGTCTTCTGTGCCTCGGGTCTCCAGGACACAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
CDS GCA 90 bp GGGTGCACCATGACGGGGCTGCTTGCGCAGGACACAGTAGAGGCCTaGCACAACCAGCGCCAGCACACGGTTCATCAGCACCAGAAACTG +
Preference number: 5 (lower is better)
Translates to: GCTMTGLLAQDTVEA*HNQRQHTVHQHQKL
Trigger: CAGTTTCTGGTGCTGATGAACCGTGTGCTGGCGCTGGTTGTGGCAGGCCTCTACTGTGTCCTGCGCAAGCAGCCCCGTCATGGTGCACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS GCA 90 bp TGGCAAAGGAGTACCGGTACATGGGTGCACCATGACGGGGCTGCTTaGGCAGGACACAGTAGAGGCCTGCCACAACCAGCGCCAGCACAC +
Preference number: 5 (lower is better)
Translates to: WQRSTGTWVHHDGAA*AGHSRGLPQPAPAH
Trigger: GTGTGCTGGCGCTGGTTGTGGCAGGCCTCTACTGTGTCCTGCGCAAGCAGCCCCGTCATGGTGCACCCATGTACCGGTACTCCTTTGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS GCA 90 bp AACTGTGTCTGGAGACCCGAGGCACAGAAGACCAGCTTCAGGACCTaGCAAGACGGGGTGGATTCCGCTGTCTCTGTCCGCGGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: NCVWRPEAQKTSFRT*QDGVDSAVSVRGAR
Trigger: CCTGGCTCCGCGGACAGAGACAGCGGAATCCACCCCGTCTTGGCAGGTCCTGAAGCTGGTCTTCTGTGCCTCGGGTCTCCAGACACAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
CDS CCA 90 bp GACCCGAGGCACAGAAGACCAGCTTCAGGACCTGCCAAGACGGGGTaGATTCCGCTGTCTCTGTCCGCGGAGCCAGGAGAACCTCATCAG +
Preference number: 5 (lower is better)
Translates to: DPRHRRPASGPAKTG*IPLSLSAEPGEPHQ
Trigger: CTGATGAGGTTCTCCTGGCTCCGCGGACAGAGACAGCGGAATCCACCCCGTCTTGGCAGGTCCTGAAGCTGGTCTTCTGTGCCTCGGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224341.2
ENSMUST00000224905.2
ENSMUST00000226086.2
CDS CCA 90 bp ATGAAGAGCTGCCCAAAGGCGGAGCAGATGGAGAGGAGGAGAGCATaGAGCGCAAACTCACTGTGCCGCCCCATGAAGCGTGCCCCCTCC +
Preference number: 5 (lower is better)
Translates to: MKSCPKAEQMERRRA*SANSLCRPMKRAPS
Trigger: GGAGGGGGCACGCTTCATGGGGCGGCACAGTGAGTTTGCGCTCCATGCTCTCCTCCTCTCCATCTGCTCCGCCTTTGGGCAGCTCTTCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 90 bp CCAGCGCCAGCACACGGTTCATCAGCACCAGAAACTGGGAGTCTGTaGAATGCTCTCCTGGTGATGTGGCTGTGGCCCCGTAGCTGCCAG +
Preference number: 5 (lower is better)
Translates to: PAPAHGSSAPETGSL*NALLVMWLWPRSCQ
Trigger: CTGGCAGCTACGGGGCCACAGCCACATCACCAGGAGAGCATTTCACAGACTCCCAGTTTCTGGTGCTGATGAACCGTGTGCTGGCGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CCA 90 bp CCTGCCACAACCAGCGCCAGCACACGGTTCATCAGCACCAGAAACTaGGAGTCTGTGAAATGCTCTCCTGGTGATGTGGCTGTGGCCCCG +
Preference number: 5 (lower is better)
Translates to: PATTSASTRFISTRN*ESVKCSPGDVAVAP
Trigger: CGGGGCCACAGCCACATCACCAGGAGAGCATTTCACAGACTCCCAGTTTCTGGTGCTGATGAACCGTGTGCTGGCGCTGGTTGTGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp TTGTCCCTTCTGGCACAGCACCATTCTCACTGGCCCCTAGGGGAACTGCATGACATGACAGGGATCACCTaGGAGGCCTTCGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: LSLLAQHHSHWPLGELHDMTGIT*EAFAST
Trigger: GGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCAT...GTCATGCAGTTCCCCTAGGGGCCAGTGAGAATGGTGCTGTGCCAGAAGGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS GCA 90 bp TGGCTGTGGCCCCGTAGCTGCCAGTCATCACTCTTTCCTGCAGTATaGCCCAAGTCAGATAGGACACCTGGAGACCCGAGGCACAGAAGA +
Preference number: 5 (lower is better)
Translates to: WLWPRSCQSSLFPAV*PKSDRTPGDPRHRR
Trigger: TCTTCTGTGCCTCGGGTCTCCAGGTGTCCTATCTGACTTGGGGCATACTGCAGGAAAGAGTGATGACTGGCAGCTACGGGGCCACAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGACAGGGATCACCTaGGAGGCCTTCGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: PVNNSLPSWCLVASRVRAMTGIT*EAFAST
Trigger: GGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCAT...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 90 bp GCTCTGGTCCACTGGATAGAAGAAACATGCTCACTCCAATGGAGATaGGGCCGGCAGTCAGGTATTCCCAGTGTTCATAGCTGCGCCGGG +
Preference number: 5 (lower is better)
Translates to: ALVHWIEETCSLQWR*GRQSGIPSVHSCAG
Trigger: CCCGGCGCAGCTATGAACACTGGGAATACCTGACTGCCGGCCTCATCTCCATTGGAGTGAGCATGTTTCTTCTATCCAGTGGACCAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CCA 90 bp CCCATCATCATGACAGGGATCACCTTGGAGGCCTTCGCCAGCACCTaGGTAGGGAAGCTGACGAACTTAAGTGCTTCATACTGGCACCAG +
Preference number: 5 (lower is better)
Translates to: PIIMTGITLEAFAST*VGKLTNLSASYWHQ
Trigger: CTGGTGCCAGTATGAAGCACTTAAGTTCGTCAGCTTCCCTACCCAGGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCATGATGATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 90 bp GTTCATCAGCACCAGAAACTGGGAGTCTGTGAAATGCTCTCCTGGTaGTGTGGCTGTGGCCCCGTAGCTGCCAGTCATCACTCTTTCCTG +
Preference number: 5 (lower is better)
Translates to: VHQHQKLGVCEMLSW*CGCGPVAASHHSFL
Trigger: CAGGAAAGAGTGATGACTGGCAGCTACGGGGCCACAGCCACATCACCAGGAGAGCATTTCACAGACTCCCAGTTTCTGGTGCTGATGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp AATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGGAGCCTTGGGCTCATaGCCAAACACACAGGCTTTC +
Preference number: 5 (lower is better)
Translates to: NSLPSWCLVASRVRAMSKGALGS*PNTQAF
Trigger: GAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTCC...TTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp TGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGGAGCCTTGGGCTCATaGCCAAACACACAGGCTTTC +
Preference number: 5 (lower is better)
Translates to: CKQFSSQLVPGSLKGACYGALGS*PNTQAF
Trigger: GAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTCC...ATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CCA 90 bp GCCAGCACCTGGGTAGGGAAGCTGACGAACTTAAGTGCTTCATACTaGCACCAGCTGCTAAGCACATTTGACAGACTGGCAAAGGAGTAC +
Preference number: 5 (lower is better)
Translates to: ASTWVGKLTNLSASY*HQLLSTFDRLAKEY
Trigger: GTACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTTAAGTTCGTCAGCTTCCCTACCCAGGTGCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 90 bp GACGAACTTAAGTGCTTCATACTGGCACCAGCTGCTAAGCACATTTaGCAGACTGGCAAAGGAGTACCGGTACATGGGTGCACCATGACG +
Preference number: 5 (lower is better)
Translates to: DELKCFILAPAAKHI*QTGKGVPVHGCTMT
Trigger: CGTCATGGTGCACCCATGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTTAAGTTCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp CTGTATGCTGATACTGAGCCAGTGCCTCAGAAGATGAGGGTCTTTACTGCACTGACCTCATCAGGAGCCTaGGGCTCATTGCCAAACACA +
Preference number: 5 (lower is better)
Translates to: LYADTEPVPQKMRVFTALTSSGA*GSLPNT
Trigger: TGTGTTTGGCAATGAGCCCAAGGCTCCTGATGAGGT...CAGTGCAGTAAAGACCCTCATCTTCTGAGGCACTGGCTCAGTATCAGCATACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 90 bp CCGATGACATCTTATAGGCAAACAGGGCATCCTGCCAATTTGAGGTaGAGCTGTCGAAAGCAATATAGCCTGCCAGTAGGACCAAGCCAG +
Preference number: 5 (lower is better)
Translates to: PMTSYRQTGHPANLR*SCRKQYSLPVGPSQ
Trigger: CTGGCTTGGTCCTACTGGCAGGCTATATTGCTTTCGACAGCTTCACCTCAAATTGGCAGGATGCCCTGTTTGCCTATAAGATGTCATCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp CCTGTAAACAATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTAGACAGGAGAATAAATaGACCCCAAACATCATCTGC +
Preference number: 5 (lower is better)
Translates to: PVNNSLPSWCLVASRVRARQENK*TPNIIC
Trigger: GCAGATGATGTTTGGGGTCAATTTATTCTCCTGTCT...AGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATTGTTTACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp AATTCTCTTCCCAGCTGGTGCCTGGTAGCCTCAAGGGTGCGTGCTATGAGCAAAGACAGCAGCTCCAAATaGTCCAATGGTGTAGAAGAT +
Preference number: 5 (lower is better)
Translates to: NSLPSWCLVASRVRAMSKDSSSK*SNGVED
Trigger: ATCTTCTACACCATTGGACAATTTGGAGCTGCTGTC...TTTGCTCATAGCACGCACCCTTGAGGCTACCAGGCACCAGCTGGGAAGAGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp TCCCACTCTGAATGCCCTGTGATAGCCTCACTCAAAGAAATCCTACTGACAAAAGGAGCCTTGGGCTCATaGCCAAACACACAGGCTTTC +
Preference number: 5 (lower is better)
Translates to: SHSECPVIASLKEILLTKGALGS*PNTQAF
Trigger: GAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTCC...TTTTGTCAGTAGGATTTCTTTGAGTGAGGCTATCACAGGGCATTCAGAGTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226086.2
CDS-3UTR CAA 90 bp AAAAGAGGCTGCCTCCAGGGCTCCAATCCTCTGCTGTATGCTGATACTGAGCCAAGACAGGAGAATAAATaGACCCCAAACATCATCTGC +
Preference number: 5 (lower is better)
Translates to: KRGCLQGSNPLLYADTEPRQENK*TPNIIC
Trigger: GCAGATGATGTTTGGGGTCAATTTATTCTCCTGTCT...TGGCTCAGTATCAGCATACAGCAGAGGATTGGAGCCCTGGAGGCAGCCTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp CAAATAAGAGCAAAAGGTGACATTTCCAAGTACCAAAACTTGGGTAGGAACACTATGACAGGGATCACCTaGGAGGCCTTCGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: QIRAKGDISKYQNLGRNTMTGIT*EAFAST
Trigger: GGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCAT...AGTGTTCCTACCCAAGTTTTGGTACTTGGAAATGTCACCTTTTGCTCTTATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp ACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGCTGCCTCCAAGACAGGAGAATAAATaGACCCCAAACATCATCTGC +
Preference number: 5 (lower is better)
Translates to: TAVISMKWGLLRQKRLPPRQENK*TPNIIC
Trigger: GCAGATGATGTTTGGGGTCAATTTATTCTCCTGTCT...TGGAGGCAGCCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp CTGTATGCTGATACTGAGCCAGTGCCTCAGAAGATGAGGGTCTTTACTGCACTGGACAGCAGCTCCAAATaGTCCAATGGTGTAGAAGAT +
Preference number: 5 (lower is better)
Translates to: LYADTEPVPQKMRVFTALDSSSK*SNGVED
Trigger: ATCTTCTACACCATTGGACAATTTGGAGCTGCTGTC...CAGTGCAGTAAAGACCCTCATCTTCTGAGGCACTGGCTCAGTATCAGCATACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp CAAACACCCACAGCTGTCATTTCCATGAAGTGGGGGCTCTTAAGGCAAAAGAGGGACAGCAGCTCCAAATaGTCCAATGGTGTAGAAGAT +
Preference number: 5 (lower is better)
Translates to: QTPTAVISMKWGLLRQKRDSSSK*SNGVED
Trigger: ATCTTCTACACCATTGGACAATTTGGAGCTGCTGTC...CCTCTTTTGCCTTAAGAGCCCCCACTTCATGGAAATGACAGCTGTGGGTGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS-3UTR CAA 90 bp TGTACAGTGAACTTTCATTTCAATACAGGTGTTGAAGGAAGCGCTGGAAGTTCAGGAGCCTTGGGCTCATaGCCAAACACACAGGCTTTC +
Preference number: 5 (lower is better)
Translates to: CTVNFHFNTGVEGSAGSSGALGS*PNTQAF
Trigger: GAAAGCCTGTGTGTTTGGCAATGAGCCCAAGGCTCC...TGAACTTCCAGCGCTTCCTTCAACACCTGTATTGAAATGAAAGTTCACTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224341.2
CDS TCA 72 bp CCACAGCTGTGTCCAGGACTGCGGAGGGGCTTCGGGTaGCTCTCCACCTGCTCCCAAGGAAGGGAGTGTGGC +
Preference number: 6 (lower is better)
Translates to: PQLCPGLRRGFG*LSTCSQGRECG
Trigger: GCCACACTCCCTTCCTTGGGAGCAGGTGGAGAGTCACCCGAAGCCCCTCCGCAGTCCTGGACACAGCTGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224905.2
ENSMUST00000226086.2
CDS GCA 72 bp ATGGAGAGGAGGAGAGCATGGAGCGCAAACTCACTGTaGCGCCCCATGAAGCGTGCCCCCTCCAGTAGGGCC +
Preference number: 6 (lower is better)
Translates to: MERRRAWSANSL*RPMKRAPSSRA
Trigger: GGCCCTACTGGAGGGGGCACGCTTCATGGGGCGGCACAGTGAGTTTGCGCTCCATGCTCTCCTCCTCTCCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS GCA 72 bp TGGAGACCCGAGGCACAGAAGACCAGCTTCAGGACCTaGCAAGACGGGGTGGATTCCGCTGTCTCTGTCCGC +
Preference number: 6 (lower is better)
Translates to: WRPEAQKTSFRT*QDGVDSAVSVR
Trigger: GCGGACAGAGACAGCGGAATCCACCCCGTCTTGGCAGGTCCTGAAGCTGGTCTTCTGTGCCTCGGGTCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224341.2
ENSMUST00000224905.2
ENSMUST00000226086.2
CDS GCA 72 bp ATGACGGGGCTGCTTGCGCAGGACACAGTAGAGGCCTaGCACAACCAGCGCCAGCACACGGTTCATCAGCAC +
Preference number: 6 (lower is better)
Translates to: MTGLLAQDTVEA*HNQRQHTVHQH
Trigger: GTGCTGATGAACCGTGTGCTGGCGCTGGTTGTGGCAGGCCTCTACTGTGTCCTGCGCAAGCAGCCCCGTCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS GCA 72 bp AGTACCGGTACATGGGTGCACCATGACGGGGCTGCTTaGGCAGGACACAGTAGAGGCCTGCCACAACCAGCG +
Preference number: 6 (lower is better)
Translates to: STGTWVHHDGAA*AGHSRGLPQPA
Trigger: CGCTGGTTGTGGCAGGCCTCTACTGTGTCCTGCGCAAGCAGCCCCGTCATGGTGCACCCATGTACCGGTACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CAA 90 bp CTGCGCCGGGACACCAGCTTTCCCATCATCATGACAGGGATCACCTaGGAGGCCTTCGCCAGCACCTGGGTAGGGAAGCTGACGAACTTA +
Preference number: 6 (lower is better)
Translates to: LRRDTSFPIIMTGIT*EAFASTWVGKLTNL
Trigger: TAAGTTCGTCAGCTTCCCTACCCAGGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCATGATGATGGGAAAGCTGGTGTCCCGGCGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS GCA 72 bp CCCCGTAGCTGCCAGTCATCACTCTTTCCTGCAGTATaGCCCAAGTCAGATAGGACACCTGGAGACCCGAGG +
Preference number: 6 (lower is better)
Translates to: PRSCQSSLFPAV*PKSDRTPGDPR
Trigger: CCTCGGGTCTCCAGGTGTCCTATCTGACTTGGGGCATACTGCAGGAAAGAGTGATGACTGGCAGCTACGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CCA 72 bp GCACATTTGACAGACTGGCAAAGGAGTACCGGTACATaGGTGCACCATGACGGGGCTGCTTGCGCAGGACAC +
Preference number: 6 (lower is better)
Translates to: AHLTDWQRSTGT*VHHDGAACAGH
Trigger: GTGTCCTGCGCAAGCAGCCCCGTCATGGTGCACCCATGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CAA 72 bp GACACCAGCTTTCCCATCATCATGACAGGGATCACCTaGGAGGCCTTCGCCAGCACCTGGGTAGGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: DTSFPIIMTGIT*EAFASTWVGKL
Trigger: CAGCTTCCCTACCCAGGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCATGATGATGGGAAAGCTGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 72 bp CACCAGAAACTGGGAGTCTGTGAAATGCTCTCCTGGTaGTGTGGCTGTGGCCCCGTAGCTGCCAGTCATCAC +
Preference number: 6 (lower is better)
Translates to: HQKLGVCEMLSW*CGCGPVAASHH
Trigger: GTGATGACTGGCAGCTACGGGGCCACAGCCACATCACCAGGAGAGCATTTCACAGACTCCCAGTTTCTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 72 bp GCACACGGTTCATCAGCACCAGAAACTGGGAGTCTGTaGAATGCTCTCCTGGTGATGTGGCTGTGGCCCCGT +
Preference number: 6 (lower is better)
Translates to: AHGSSAPETGSL*NALLVMWLWPR
Trigger: ACGGGGCCACAGCCACATCACCAGGAGAGCATTTCACAGACTCCCAGTTTCTGGTGCTGATGAACCGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CCA 72 bp ATGACAGGGATCACCTTGGAGGCCTTCGCCAGCACCTaGGTAGGGAAGCTGACGAACTTAAGTGCTTCATAC +
Preference number: 6 (lower is better)
Translates to: MTGITLEAFAST*VGKLTNLSASY
Trigger: GTATGAAGCACTTAAGTTCGTCAGCTTCCCTACCCAGGTGCTGGCGAAGGCCTCCAAGGTGATCCCTGTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 72 bp AAGTGCTTCATACTGGCACCAGCTGCTAAGCACATTTaGCAGACTGGCAAAGGAGTACCGGTACATGGGTGC +
Preference number: 6 (lower is better)
Translates to: KCFILAPAAKHI*QTGKGVPVHGC
Trigger: GCACCCATGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 72 bp AGACAGCAGCTCCAAATTGTCCAATGGTGTAGAAGATaGAGAGCTGCCCAAAGGCGGAGCAGATGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: RQQLQIVQWCRR*RAAQRRSRWRG
Trigger: TCCTCTCCATCTGCTCCGCCTTTGGGCAGCTCTTCATCTTCTACACCATTGGACAATTTGGAGCTGCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 72 bp CACTGGATAGAAGAAACATGCTCACTCCAATGGAGATaGGGCCGGCAGTCAGGTATTCCCAGTGTTCATAGC +
Preference number: 6 (lower is better)
Translates to: HWIEETCSLQWR*GRQSGIPSVHS
Trigger: GCTATGAACACTGGGAATACCTGACTGCCGGCCTCATCTCCATTGGAGTGAGCATGTTTCTTCTATCCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS CCA 72 bp TGGGTAGGGAAGCTGACGAACTTAAGTGCTTCATACTaGCACCAGCTGCTAAGCACATTTGACAGACTGGCA +
Preference number: 6 (lower is better)
Translates to: WVGKLTNLSASY*HQLLSTFDRLA
Trigger: TGCCAGTCTGTCAAATGTGCTTAGCAGCTGGTGCCAGTATGAAGCACTTAAGTTCGTCAGCTTCCCTACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2
CDS TCA 72 bp TCTTATAGGCAAACAGGGCATCCTGCCAATTTGAGGTaGAGCTGTCGAAAGCAATATAGCCTGCCAGTAGGA +
Preference number: 6 (lower is better)
Translates to: SYRQTGHPANLR*SCRKQYSLPVG
Trigger: TCCTACTGGCAGGCTATATTGCTTTCGACAGCTTCACCTCAAATTGGCAGGATGCCCTGTTTGCCTATAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041353.7
ENSMUST00000223987.2
ENSMUST00000224905.2