Pregenerated sensors for SLC35A5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022664Ensembl transcript IDs: ENSMUST00000023344.10, ENSMUST00000114600.2, ENSMUST00000180636.8, ENSMUST00000181177.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATTATCTGCCACATGACTGCTGTACCAATGAAGAATCACCTGGCTaGATGCAAACTTGTCTTGAGAAATACCATGCACTTCTAAGTAGG | + |
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Preference number: 1 (lower is better) Translates to: NYLPHDCCTNEESPG*MQTCLEKYHALLSR Trigger: CCTACTTAGAAGTGCATGGTATTTCTCAAGACAAGTTTGCATGCAGCCAGGTGATTCTTCATTGGTACAGCAGTCATGTGGCAGATAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR CCA 90 bp | GGAGTAGGAACCATGTCACGATTACTGTGTCTATTCCTTTTTCTGTaGGACAACTTTTTAGGTCATACAATTCCCACTCCATTAGTACCT | + |
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Preference number: 1 (lower is better) Translates to: GVGTMSRLLCLFLFL*DNFLGHTIPTPLVP Trigger: AGGTACTAATGGAGTGGGAATTGTATGACCTAAAAAGTTGTCCCACAGAAAAAGGAATAGACACAGTAATCGTGACATGGTTCCTACTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR TCA 90 bp | GCTTTCAAACATCATCACTTTATCAGAAAAGACAATTGCCACAATTaGAAATGTGCAAACACAGTTTGTGTGAGTTGTCCACCAACCAGG | + |
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Preference number: 1 (lower is better) Translates to: AFKHHHFIRKDNCHN*KCANTVCVSCPPTR Trigger: CCTGGTTGGTGGACAACTCACACAAACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCTTTTCTGATAAAGTGATGATGTTTGAAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| 3UTR CCA 90 bp | AACTTTTTAGGTCATACAATTCCCACTCCATTAGTACCTGGGAAATaGTTCTGGACCTCTTACCTTCACATTGTCCTTCATAAAATAATA | + |
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Preference number: 1 (lower is better) Translates to: NFLGHTIPTPLVPGK*FWTSYLHIVLHKII Trigger: TATTATTTTATGAAGGACAATGTGAAGGTAAGAGGTCCAGAACCATTTCCCAGGTACTAATGGAGTGGGAATTGTATGACCTAAAAAGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR GCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGCCCTGCTACCTCACTaGCATTTAGTTCCTGGAGTA | + |
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Preference number: 2 (lower is better) Translates to: GTKEDLGTSSQLAYVERKALLPH*HLVPGV Trigger: TACTCCAGGAACTAAATGGCAGTGAGGTAGCAGGGC...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR CCA 90 bp | AGGAAAAGGGACAGGGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTCCTGGGAAATGGTTCTaGACCTCTTACCTTCACATT | + |
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Preference number: 2 (lower is better) Translates to: RKRDRVPRRIWAHPASWLPGKWF*TSYLHI Trigger: AATGTGAAGGTAAGAGGTCCAGAACCATTTCCCAGG...AAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACCCTGTCCCTTTTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | AGGAAAAGGGACAGGGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTCATGCAAACTTGTCTTaGGAAATACCATGCACTTCT | + |
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Preference number: 2 (lower is better) Translates to: RKRDRVPRRIWAHPASWLHANLS*EIPCTS Trigger: AGAAGTGCATGGTATTTCTCAAGACAAGTTTGCATG...AAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACCCTGTCCCTTTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGTAAACACACAGGCTTaGAGCTTGTTTCTACTACCC | + |
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Preference number: 2 (lower is better) Translates to: GTKEDLGTSSQLAYVERKVNTQA*SLFLLP Trigger: GGGTAGTAGAAACAAGCTTCAAGCCTGTGTGTTTAC...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR GCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGAAGAATCACCTGGCTaGATGCAAACTTGTCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: GTKEDLGTSSQLAYVERKEESPG*MQTCLE Trigger: CTCAAGACAAGTTTGCATGCAGCCAGGTGATTCTTC...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | AGGAAAAGGGACAGGGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTACAAGAAAAATCAAATaGCTCCACACCACTGATACA | + |
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Preference number: 2 (lower is better) Translates to: RKRDRVPRRIWAHPASWLTRKIK*LHTTDT Trigger: TGTATCAGTGGTGTGGAGTCATTTGATTTTTCTTGT...AAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACCCTGTCCCTTTTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | TTGGGATCTAGGTCTAAGCCACTTTCCCTGTCACAACCAGTATCCACATTCTTGAGTGTTGTTGAGAGGTaGCTTTCTGGTTACTGGCCC | + |
|
Preference number: 2 (lower is better) Translates to: LGSRSKPLSLSQPVSTFLSVVER*LSGYWP Trigger: GGGCCAGTAACCAGAAAGTCACCTCTCAACAACACT...CAAGAATGTGGATACTGGTTGTGACAGGGAAAGTGGCTTAGACCTAGATCCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR CCA 90 bp | TTGGGATCTAGGTCTAAGCCACTTTCCCTGTCACAACCAGTATCCACATTCTTGCACTCCATTAGTACCTaGGAAATGGTTCTGGACCTC | + |
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Preference number: 2 (lower is better) Translates to: LGSRSKPLSLSQPVSTFLHSIST*EMVLDL Trigger: GAGGTCCAGAACCATTTCCCAGGTACTAATGGAGTG...CAAGAATGTGGATACTGGTTGTGACAGGGAAAGTGGCTTAGACCTAGATCCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | ATGTTATTTAAAATCTATGGCACAGCCAGATACTTAGGTCTTTCAGCCAAAACTACAGAGCGAGAGAGATaGCCTTGGCAGGCAGATGAT | + |
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Preference number: 2 (lower is better) Translates to: MLFKIYGTARYLGLSAKTTERER*PWQADD Trigger: ATCATCTGCCTGCCAAGGTCATCTCTCTCGCTCTGT...AGTTTTGGCTGAAAGACCTAAGTATCTGGCTGTGCCATAGATTTTAAATAACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR GCA 90 bp | ATCTGCCACATGACTGCTGTACCAATGAAGAATCACCTGGCTGCATGCAAACTTCCACAATTGAAAATGTaGAAACACAGTTTGTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: ICHMTAVPMKNHLAACKLPQLKM*KHSLCE Trigger: CTCACACAAACTGTGTTTGCACATTTTCAATTGTGG...AAGTTTGCATGCAGCCAGGTGATTCTTCATTGGTACAGCAGTCATGTGGCAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | ATGTTATTTAAAATCTATGGCACAGCCAGATACTTAGGTCTTTCAGCCAAAACTCTGGACCCTGGAGGCTaGAGAAACAATCTGCATAGT | + |
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Preference number: 2 (lower is better) Translates to: MLFKIYGTARYLGLSAKTLDPGG*RNNLHS Trigger: ACTATGCAGATTGTTTCTTCAGCCTCCAGGGTCCAG...AGTTTTGGCTGAAAGACCTAAGTATCTGGCTGTGCCATAGATTTTAAATAACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR TCA 90 bp | ATGTTATTTAAAATCTATGGCACAGCCAGATACTTAGGTCTTTCAGCCAAAACTGAGGGACAGGCAGGATaGTATAACAATGACAGAGCG | + |
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Preference number: 2 (lower is better) Translates to: MLFKIYGTARYLGLSAKTEGQAG*YNNDRA Trigger: CGCTCTGTCATTGTTATATCATCCTGCCTGTCCCTC...AGTTTTGGCTGAAAGACCTAAGTATCTGGCTGTGCCATAGATTTTAAATAACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR GCA 90 bp | TTGGGATCTAGGTCTAAGCCACTTTCCCTGTCACAACCAGTATCCACATTCTTGCTTGAAGAAGGAATGTaGAAACTTCATGTTAGCTTA | + |
|
Preference number: 2 (lower is better) Translates to: LGSRSKPLSLSQPVSTFLLEEGM*KLHVSL Trigger: TAAGCTAACATGAAGTTTGCACATTCCTTCTTCAAG...CAAGAATGTGGATACTGGTTGTGACAGGGAAAGTGGCTTAGACCTAGATCCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR CAA 90 bp | TGCTTTCAAACATCATCACTTTATCAGAAAAGACAATTGCCACAATaGAAAATGTGCAAACACAGTTTGTGTGAGTTGTCCACCAACCAG | + |
|
Preference number: 2 (lower is better) Translates to: CFQTSSLYQKRQLPQ*KMCKHSLCELSTNQ Trigger: CTGGTTGGTGGACAACTCACACAAACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCTTTTCTGATAAAGTGATGATGTTTGAAAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| 3UTR-3UTR CAA 90 bp | AGGAAAAGGGACAGGGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTCCTAAAGCCAGAGACTaGACTTTCAGAATAGGATAT | + |
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Preference number: 3 (lower is better) Translates to: RKRDRVPRRIWAHPASWLPKARD*TFRIGY Trigger: ATATCCTATTCTGAAAGTCAAGTCTCTGGCTTTAGG...AAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACCCTGTCCCTTTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR CAA 90 bp | GGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGATTACAGCAAGCACGCTATCTCCATTaGTGTAACTGTAGGGTCAAA | + |
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Preference number: 3 (lower is better) Translates to: GSGHIQPAGLCREKGLQQARYLH*CNCRVK Trigger: TTTGACCCTACAGTTACACAAATGGAGATAGCGTGC...TTGCTGTAATCCTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR TCA 72 bp | ATTGCTAAGGCCTCGAAATCTGAGGGACAGGCAGGATaGTATAACAATGACAGAGCGAGAGAGATGACCTTG | + |
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Preference number: 3 (lower is better) Translates to: IAKASKSEGQAG*YNNDRAREMTL Trigger: CAAGGTCATCTCTCTCGCTCTGTCATTGTTATATCATCCTGCCTGTCCCTCAGATTTCGAGGCCTTAGCAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR CAA 90 bp | GCAAAACGACTATTGCTAAGGCCTCGAAATCTGAGGGACAGGCAGGATGATATAATGTGCAAACACAGTTaGTGTGAGTTGTCCACCAAC | + |
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Preference number: 3 (lower is better) Translates to: AKRLLLRPRNLRDRQDDIMCKHS*CELSTN Trigger: GTTGGTGGACAACTCACACAAACTGTGTTTGCACAT...TATATCATCCTGCCTGTCCCTCAGATTTCGAGGCCTTAGCAATAGTCGTTTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR GCA 72 bp | TCCCTGTCACAACCAGTATCCACATTCTTGTTTCCTTaGCCAATGCTGAGAAATACAACCTGTTGGGATCTC | + |
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Preference number: 3 (lower is better) Translates to: SLSQPVSTFLFP*PMLRNTTCWDL Trigger: GAGATCCCAACAGGTTGTATTTCTCAGCATTGGGCAAGGAAACAAGAATGTGGATACTGGTTGTGACAGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR TCA 72 bp | GAAATACAACCTGTTGGGATCTCTAGCCTATGTGTATaGATAAGAGTCGCCCTGCTACCTCACTGCCATTTA | + |
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Preference number: 3 (lower is better) Translates to: EIQPVGISSLCV*IRVALLPHCHL Trigger: TAAATGGCAGTGAGGTAGCAGGGCGACTCTTATTCATACACATAGGCTAGAGATCCCAACAGGTTGTATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR TCA 72 bp | GTACAATTGTCTCTTAGGGAACAGTCTCTCCTGAAATaGAGGCAGGAATTAGATGGGGTGAAGAAGGCATCA | + |
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Preference number: 3 (lower is better) Translates to: VQLSLREQSLLK*RQELDGVKKAS Trigger: TGATGCCTTCTTCACCCCATCTAATTCCTGCCTTCATTTCAGGAGAGACTGTTCCCTAAGAGACAATTGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| 3UTR GCA 72 bp | CCACATGACTGCTGTACCAATGAAGAATCACCTGGCTaGATGCAAACTTGTCTTGAGAAATACCATGCACTT | + |
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Preference number: 3 (lower is better) Translates to: PHDCCTNEESPG*MQTCLEKYHAL Trigger: AAGTGCATGGTATTTCTCAAGACAAGTTTGCATGCAGCCAGGTGATTCTTCATTGGTACAGCAGTCATGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR TCA 72 bp | AACCAGTATCCACATTCTTGTTTCCTTGCCCAATGCTaGGAAATACAACCTGTTGGGATCTCTAGCCTATGT | + |
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Preference number: 3 (lower is better) Translates to: NQYPHSCFLAQC*EIQPVGISSLC Trigger: ACATAGGCTAGAGATCCCAACAGGTTGTATTTCTCAGCATTGGGCAAGGAAACAAGAATGTGGATACTGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR CCA 72 bp | ACAATTCCCACTCCATTAGTACCTGGGAAATGGTTCTaGACCTCTTACCTTCACATTGTCCTTCATAAAATA | + |
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Preference number: 3 (lower is better) Translates to: TIPTPLVPGKWF*TSYLHIVLHKI Trigger: TATTTTATGAAGGACAATGTGAAGGTAAGAGGTCCAGAACCATTTCCCAGGTACTAATGGAGTGGGAATTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR CCA 72 bp | ACCATGTCACGATTACTGTGTCTATTCCTTTTTCTGTaGGACAACTTTTTAGGTCATACAATTCCCACTCCA | + |
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Preference number: 3 (lower is better) Translates to: TMSRLLCLFLFL*DNFLGHTIPTP Trigger: TGGAGTGGGAATTGTATGACCTAAAAAGTTGTCCCACAGAAAAAGGAATAGACACAGTAATCGTGACATGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR-3UTR CAA 90 bp | ATGTTATTTAAAATCTATGGCACAGCCAGATACTTAGGTCTTTCAGCCAAAACTAGACAATTGCCACAATaGAAAATGTGCAAACACAGT | + |
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Preference number: 3 (lower is better) Translates to: MLFKIYGTARYLGLSAKTRQLPQ*KMCKHS Trigger: ACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCT...AGTTTTGGCTGAAAGACCTAAGTATCTGGCTGTGCCATAGATTTTAAATAACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGCATGCTGGGACGTTTTaGTACTGGCTGTTAGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GTKEDLGTSSQLAYVERKHAGTF*YWLLGP Trigger: TGGCCCTAACAGCCAGTACCAAAACGTCCCAGCATG...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGCCACTGAAAGGCCCTaGAAGGCAGTCACGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: GTKEDLGTSSQLAYVERKATERP*KAVTKI Trigger: TATTTTCGTGACTGCCTTCCAGGGCCTTTCAGTGGC...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR TCA 90 bp | GCAAAACGACTATTGCTAAGGCCTCGAAATCTGAGGGACAGGCAGGATGATATATCACGGTTACTGCTCTaGAGGACCAGGGTCAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: AKRLLLRPRNLRDRQDDISRLLL*RTRVSP Trigger: TGGGCTGACCCTGGTCCTTCAGAGCAGTAACCGTGA...TATATCATCCTGCCTGTCCCTCAGATTTCGAGGCCTTAGCAATAGTCGTTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR TCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGAAAAACCCACAGTTCTaGATCTGGTCACGGTTACTG | + |
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Preference number: 4 (lower is better) Translates to: GTKEDLGTSSQLAYVERKKNPQF*IWSRLL Trigger: CAGTAACCGTGACCAGATTCAGAACTGTGGGTTTTT...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | GGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGATTACAGCAACTAACCCAGGGCGCCTaGAGCATTTTCTTTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: GSGHIQPAGLCREKGLQQLTQGA*SIFFPF Trigger: GAATGGAAAGAAAATGCTCCAGGCGCCCTGGGTTAG...TTGCTGTAATCCTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | ATCTGCCACATGACTGCTGTACCAATGAAGAATCACCTGGCTGCATGCAAACTTCTTCTCCATCCCCACTaGAACGCTCCCAAAGACTGC | + |
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Preference number: 4 (lower is better) Translates to: ICHMTAVPMKNHLAACKLLLHPH*NAPKDC Trigger: GCAGTCTTTGGGAGCGTTCCAGTGGGGATGGAGAAG...AAGTTTGCATGCAGCCAGGTGATTCTTCATTGGTACAGCAGTCATGTGGCAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR TCA 90 bp | GGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGATTACAGCAACAGTCTCTCCTGAAATaGAGGCAGGAATTAGATGGG | + |
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Preference number: 4 (lower is better) Translates to: GSGHIQPAGLCREKGLQQQSLLK*RQELDG Trigger: CCCATCTAATTCCTGCCTTCATTTCAGGAGAGACTG...TTGCTGTAATCCTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR TCA 90 bp | GGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGATTACAGCAAAAGCCCAAACGGATGTaGCTAAAAACTCTGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GSGHIQPAGLCREKGLQQKPKRM*LKTLAV Trigger: CACAGCCAGAGTTTTTAGTCACATCCGTTTGGGCTT...TTGCTGTAATCCTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR TCA 90 bp | AGGAAAAGGGACAGGGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTTGGGCCATCAAGACATaGAACATGTTATCTAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: RKRDRVPRRIWAHPASWLWAIKT*NMLSKN Trigger: ATTCTTAGATAACATGTTTCATGTCTTGATGGCCCA...AAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACCCTGTCCCTTTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR GCA 90 bp | TTGGGATCTAGGTCTAAGCCACTTTCCCTGTCACAACCAGTATCCACATTCTTGAACGCTCCCAAAGACTaGCACTCAGATGGCGGATTC | + |
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Preference number: 4 (lower is better) Translates to: LGSRSKPLSLSQPVSTFLNAPKD*HSDGGF Trigger: GAATCCGCCATCTGAGTGGCAGTCTTTGGGAGCGTT...CAAGAATGTGGATACTGGTTGTGACAGGGAAAGTGGCTTAGACCTAGATCCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | CTGAAAGTCCACTCCTTCGATGTACAATTGTCTCTTAGGGAACAGTCTCTCCTGCATGCTGGGACGTTTTaGTACTGGCTGTTAGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LKVHSFDVQLSLREQSLLHAGTF*YWLLGP Trigger: TGGCCCTAACAGCCAGTACCAAAACGTCCCAGCATG...CAGGAGAGACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS-3UTR TCA 90 bp | GCAAAACGACTATTGCTAAGGCCTCGAAATCTGAGGGACAGGCAGGATGATATACAAGATAAAAGCCACTaGAAGGCCCTGGAAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: AKRLLLRPRNLRDRQDDIQDKSH*KALEGS Trigger: ACTGCCTTCCAGGGCCTTTCAGTGGCTTTTATCTTG...TATATCATCCTGCCTGTCCCTCAGATTTCGAGGCCTTAGCAATAGTCGTTTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | CTGAAAGTCCACTCCTTCGATGTACAATTGTCTCTTAGGGAACAGTCTCTCCTGCTAACCCAGGGCGCCTaGAGCATTTTCTTTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: LKVHSFDVQLSLREQSLLLTQGA*SIFFPF Trigger: GAATGGAAAGAAAATGCTCCAGGCGCCCTGGGTTAG...CAGGAGAGACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS-3UTR CCA 90 bp | GCAAAACGACTATTGCTAAGGCCTCGAAATCTGAGGGACAGGCAGGATGATATAGCTGTGGTGTTCCACTaGACTTCACTGAAAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: AKRLLLRPRNLRDRQDDIAVVFH*TSLKVH Trigger: GTGGACTTTCAGTGAAGTCCAGTGGAACACCACAGC...TATATCATCCTGCCTGTCCCTCAGATTTCGAGGCCTTAGCAATAGTCGTTTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | CCACAATTGAAAATGTGCAAACACAGTTTGTGTGAGTTGTCCACCAACCAGGTACTTCTCCATCCCCACTaGAACGCTCCCAAAGACTGC | + |
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Preference number: 4 (lower is better) Translates to: PQLKMCKHSLCELSTNQVLLHPH*NAPKDC Trigger: GCAGTCTTTGGGAGCGTTCCAGTGGGGATGGAGAAG...TACCTGGTTGGTGGACAACTCACACAAACTGTGTTTGCACATTTTCAATTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| CDS-3UTR TCA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGGAAAATAAGGACTACTaGAAATGCATTGTGGCCATA | + |
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Preference number: 4 (lower is better) Translates to: GTKEDLGTSSQLAYVERKENKDY*KCIVAI Trigger: TATGGCCACAATGCATTTTCAGTAGTCCTTATTTTC...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR TCA 90 bp | GCAAAACGACTATTGCTAAGGCCTCGAAATCTGAGGGACAGGCAGGATGATATAGCTTCAGCACTATCCTaGATAGAAGAGCTGTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: AKRLLLRPRNLRDRQDDIASALS*IEELLL Trigger: TAACAACAGCTCTTCTATTCAGGATAGTGCTGAAGC...TATATCATCCTGCCTGTCCCTCAGATTTCGAGGCCTTAGCAATAGTCGTTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| 3UTR CAA 72 bp | TTCCCTGTCACAACCAGTATCCACATTCTTGTTTCCTaGCCCAATGCTGAGAAATACAACCTGTTGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: FPVTTSIHILVS*PNAEKYNLLGS Trigger: AGATCCCAACAGGTTGTATTTCTCAGCATTGGGCAAGGAAACAAGAATGTGGATACTGGTTGTGACAGGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR GCA 90 bp | ATCTGCCACATGACTGCTGTACCAATGAAGAATCACCTGGCTGCATGCAAACTTCCACGGGTTTTTAATTaGCTTAAGAAGATCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: ICHMTAVPMKNHLAACKLPRVFN*LKKITF Trigger: GAAAGTGATCTTCTTAAGGCAATTAAAAACCCGTGG...AAGTTTGCATGCAGCCAGGTGATTCTTCATTGGTACAGCAGTCATGTGGCAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR GCA 90 bp | CTGAAAGTCCACTCCTTCGATGTACAATTGTCTCTTAGGGAACAGTCTCTCCTGCCACGGGTTTTTAATTaGCTTAAGAAGATCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: LKVHSFDVQLSLREQSLLPRVFN*LKKITF Trigger: GAAAGTGATCTTCTTAAGGCAATTAAAAACCCGTGG...CAGGAGAGACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS-3UTR GCA 90 bp | TATCAGAAAAGACAATTGCCACAATTGAAAATGTGCAAACACAGTTTGTGTGAGTCTGGTCACGGTTACTaGTCTGAAGGACCAGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: YQKRQLPQLKMCKHSLCESGHGY*SEGPGS Trigger: TGACCCTGGTCCTTCAGAGCAGTAACCGTGACCAGA...CTCACACAAACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCTTTTCTGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | TATCAGAAAAGACAATTGCCACAATTGAAAATGTGCAAACACAGTTTGTGTGAGCTAACCCAGGGCGCCTaGAGCATTTTCTTTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: YQKRQLPQLKMCKHSLCELTQGA*SIFFPF Trigger: GAATGGAAAGAAAATGCTCCAGGCGCCCTGGGTTAG...CTCACACAAACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCTTTTCTGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| CDS-3UTR CCA 90 bp | ATCTGCCACATGACTGCTGTACCAATGAAGAATCACCTGGCTGCATGCAAACTTACTTGTTCTCTTCATTaGCAGAGTATTTTACCAGTA | + |
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Preference number: 4 (lower is better) Translates to: ICHMTAVPMKNHLAACKLTCSLH*QSILPV Trigger: TACTGGTAAAATACTCTGCCAATGAAGAGAACAAGT...AAGTTTGCATGCAGCCAGGTGATTCTTCATTGGTACAGCAGTCATGTGGCAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CCA 90 bp | AAAGTCCACTCCTTCGATGTACAATTGTCTCTTAGGGAACAGTCTCTCCTGAAAACTTGTTCTCTTCATTaGCAGAGTATTTTACCAGTA | + |
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Preference number: 4 (lower is better) Translates to: KVHSFDVQLSLREQSLLKTCSLH*QSILPV Trigger: TACTGGTAAAATACTCTGCCAATGAAGAGAACAAGT...TTTCAGGAGAGACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS-3UTR GCA 90 bp | TATCAGAAAAGACAATTGCCACAATTGAAAATGTGCAAACACAGTTTGTGTGAGCCACGGGTTTTTAATTaGCTTAAGAAGATCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: YQKRQLPQLKMCKHSLCEPRVFN*LKKITF Trigger: GAAAGTGATCTTCTTAAGGCAATTAAAAACCCGTGG...CTCACACAAACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCTTTTCTGATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| CDS CCA 90 bp | GTTAGGGCCACGATAGACAAGAACAGAATCAGGAGGGATGCCCACTaGATCCAGTTCAGATGCCGCAGGCTGAAGATAGGACAGCACATA | + |
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Preference number: 5 (lower is better) Translates to: VRATIDKNRIRRDAH*IQFRCRRLKIGQHI Trigger: TATGTGCTGTCCTATCTTCAGCCTGCGGCATCTGAACTGGATCCAGTGGGCATCCCTCCTGATTCTGTTCTTGTCTATCGTGGCCCTAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS CCA 90 bp | CTAGCAGGAATGTGTACAGCGTTGGTGGGCCTAACCCAGGGCGCCTaGAGCATTTTCTTTCCATTCCACGGGTTTTTAATTGCCTTAAGA | + |
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Preference number: 5 (lower is better) Translates to: LAGMCTALVGLTQGA*SIFFPFHGFLIALR Trigger: TCTTAAGGCAATTAAAAACCCGTGGAATGGAAAGAAAATGCTCCAGGCGCCCTGGGTTAGGCCCACCAACGCTGTACACATTCCTGCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023344.10 ENSMUST00000114600.2 ENSMUST00000180636.8 ENSMUST00000181177.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCCACTCCTTCGATGTACAATTGTCTCTTAGGGAACAGTCTCTCCTGAAAGGAATGTGTACAGCGTaGGTGGGCCTAACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: KVHSFDVQLSLREQSLLKGMCTA*VGLTQG Trigger: GCCCTGGGTTAGGCCCACCAACGCTGTACACATTCC...TTTCAGGAGAGACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS-3UTR CAA 90 bp | GGTACCAAGGAGGATCTGGGCACATCCAGCCAGCTGGCTTATGTAGAGAGAAAGTACTTGTTCTCTTCATaGGCAGAGTATTTTACCAGT | + |
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Preference number: 5 (lower is better) Translates to: GTKEDLGTSSQLAYVERKYLFSS*AEYFTS Trigger: ACTGGTAAAATACTCTGCCAATGAAGAGAACAAGTA...CTTTCTCTCTACATAAGCCAGCTGGCTGGATGTGCCCAGATCCTCCTTGGTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CAA 90 bp | ATGTTATTTAAAATCTATGGCACAGCCAGATACTTAGGTCTTTCAGCCAAAACTGGAATGTGTACAGCGTaGGTGGGCCTAACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: MLFKIYGTARYLGLSAKTGMCTA*VGLTQG Trigger: GCCCTGGGTTAGGCCCACCAACGCTGTACACATTCC...AGTTTTGGCTGAAAGACCTAAGTATCTGGCTGTGCCATAGATTTTAAATAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CAA 90 bp | TATCAGAAAAGACAATTGCCACAATTGAAAATGTGCAAACACAGTTTGTGTGAGGGAATGTGTACAGCGTaGGTGGGCCTAACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: YQKRQLPQLKMCKHSLCEGMCTA*VGLTQG Trigger: GCCCTGGGTTAGGCCCACCAACGCTGTACACATTCC...CTCACACAAACTGTGTTTGCACATTTTCAATTGTGGCAATTGTCTTTTCTGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| CDS-3UTR CAA 90 bp | TTGGGATCTAGGTCTAAGCCACTTTCCCTGTCACAACCAGTATCCACATTCTTGTCATCACTCTTGAGTTaGGTAAGTCTTTCCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: LGSRSKPLSLSQPVSTFLSSLLS*VSLSSS Trigger: AGAGCTGGAAAGACTTACCAAACTCAAGAGTGATGA...CAAGAATGTGGATACTGGTTGTGACAGGGAAAGTGGCTTAGACCTAGATCCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS TCA 90 bp | GTCCAGGAAGTACAGAAAGGCAGGAATGGACCACTTCATGAAACTTaGGAATTCCTTCCAGGAAGTACATCTCAAATGTCTACTTTGATG | + |
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Preference number: 5 (lower is better) Translates to: VQEVQKGRNGPLHET*EFLPGSTSQMSTLM Trigger: CATCAAAGTAGACATTTGAGATGTACTTCCTGGAAGGAATTCTCAAGTTTCATGAAGTGGTCCATTCCTGCCTTTCTGTACTTCCTGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023344.10 ENSMUST00000114600.2 ENSMUST00000180636.8 |
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| CDS TCA 90 bp | TCAAGTTGTCCAGGAAGTACAGAAAGGCAGGAATGGACCACTTCATaGAACTTGAGAATTCCTTCCAGGAAGTACATCTCAAATGTCTAC | + |
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Preference number: 5 (lower is better) Translates to: SSCPGSTERQEWTTS*NLRIPSRKYISNVY Trigger: GTAGACATTTGAGATGTACTTCCTGGAAGGAATTCTCAAGTTTCATGAAGTGGTCCATTCCTGCCTTTCTGTACTTCCTGGACAACTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023344.10 ENSMUST00000114600.2 ENSMUST00000180636.8 |
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| CDS-3UTR CAA 90 bp | CCACAATTGAAAATGTGCAAACACAGTTTGTGTGAGTTGTCCACCAACCAGGTATCATCACTCTTGAGTTaGGTAAGTCTTTCCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PQLKMCKHSLCELSTNQVSSLLS*VSLSSS Trigger: AGAGCTGGAAAGACTTACCAAACTCAAGAGTGATGA...TACCTGGTTGGTGGACAACTCACACAAACTGTGTTTGCACATTTTCAATTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| CDS TCA 90 bp | GACACTGTTGTGATGATGACAGTTGTCACCTGGGCCATCAAGACATaGAACATGTTATCTAAGAATTTCAAGATAAAAGCCACTGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: DTVVMMTVVTWAIKT*NMLSKNFKIKATER Trigger: CCTTTCAGTGGCTTTTATCTTGAAATTCTTAGATAACATGTTTCATGTCTTGATGGCCCAGGTGACAACTGTCATCATCACAACAGTGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS-3UTR CAA 90 bp | AAAGTCCACTCCTTCGATGTACAATTGTCTCTTAGGGAACAGTCTCTCCTGAAATACTTGTTCTCTTCATaGGCAGAGTATTTTACCAGT | + |
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Preference number: 5 (lower is better) Translates to: KVHSFDVQLSLREQSLLKYLFSS*AEYFTS Trigger: ACTGGTAAAATACTCTGCCAATGAAGAGAACAAGTA...TTTCAGGAGAGACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS CCA 72 bp | TCCCCACTGGAACGCTCCCAAAGACTGCCACTCAGATaGCGGATTCTTTCTTGCTTAGGTGCACACTCTAGA | + |
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Preference number: 6 (lower is better) Translates to: SPLERSQRLPLR*RILSCLGAHSR Trigger: TCTAGAGTGTGCACCTAAGCAAGAAAGAATCCGCCATCTGAGTGGCAGTCTTTGGGAGCGTTCCAGTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000181177.2 |
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| CDS CCA 72 bp | ACGATAGACAAGAACAGAATCAGGAGGGATGCCCACTaGATCCAGTTCAGATGCCGCTTCAGCACTATCCTG | + |
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Preference number: 6 (lower is better) Translates to: TIDKNRIRRDAH*IQFRCRFSTIL Trigger: CAGGATAGTGCTGAAGCGGCATCTGAACTGGATCCAGTGGGCATCCCTCCTGATTCTGTTCTTGTCTATCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000180636.8 |
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| CDS CCA 72 bp | ACGATAGACAAGAACAGAATCAGGAGGGATGCCCACTaGATCCAGTTCAGATGCCGCAGGCTGAAGATAGGA | + |
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Preference number: 6 (lower is better) Translates to: TIDKNRIRRDAH*IQFRCRRLKIG Trigger: TCCTATCTTCAGCCTGCGGCATCTGAACTGGATCCAGTGGGCATCCCTCCTGATTCTGTTCTTGTCTATCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114600.2 |
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| CDS CCA 72 bp | ATGTGTACAGCGTTGGTGGGCCTAACCCAGGGCGCCTaGAGCATTTTCTTTCCATTCCACGGGTTTTTAATT | + |
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Preference number: 6 (lower is better) Translates to: MCTALVGLTQGA*SIFFPFHGFLI Trigger: AATTAAAAACCCGTGGAATGGAAAGAAAATGCTCCAGGCGCCCTGGGTTAGGCCCACCAACGCTGTACACAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023344.10 ENSMUST00000114600.2 ENSMUST00000180636.8 ENSMUST00000181177.2 |
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| CDS TCA 72 bp | ACTATAATCAGAACGTGGCCCAAGCCCAAACGGATGTaGCTAAAAACTCTGGCTGTGGTGTTCCACTGGACT | + |
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Preference number: 6 (lower is better) Translates to: TIIRTWPKPKRM*LKTLAVVFHWT Trigger: AGTCCAGTGGAACACCACAGCCAGAGTTTTTAGTCACATCCGTTTGGGCTTGGGCCACGTTCTGATTATAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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| CDS GCA 72 bp | TGGGGTGAAGAAGGCATCATGATGAAATCCATGTCCTaGCAATTCATGCTGGGACGTTTTGGTACTGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: WGEEGIMMKSMS*QFMLGRFGTGC Trigger: ACAGCCAGTACCAAAACGTCCCAGCATGAATTGGCAGGACATGGATTTCATCATGATGCCTTCTTCACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023344.10 ENSMUST00000180636.8 |
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| CDS TCA 72 bp | CCAGGAAGTACAGAAAGGCAGGAATGGACCACTTCATaGAACTTGAGAATTCCTTCCAGGAAGTACATCTCA | + |
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Preference number: 6 (lower is better) Translates to: PGSTERQEWTTS*NLRIPSRKYIS Trigger: TGAGATGTACTTCCTGGAAGGAATTCTCAAGTTTCATGAAGTGGTCCATTCCTGCCTTTCTGTACTTCCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023344.10 ENSMUST00000114600.2 ENSMUST00000180636.8 |
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| CDS TCA 72 bp | GTGATGATGACAGTTGTCACCTGGGCCATCAAGACATaGAACATGTTATCTTCATTGGCAGAGTATTTTACC | + |
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Preference number: 6 (lower is better) Translates to: VMMTVVTWAIKT*NMLSSLAEYFT Trigger: GGTAAAATACTCTGCCAATGAAGATAACATGTTTCATGTCTTGATGGCCCAGGTGACAACTGTCATCATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181177.2 |
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| CDS TCA 72 bp | GTGATGATGACAGTTGTCACCTGGGCCATCAAGACATaGAACATGTTATCTAAGAATTTCAAGATAAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: VMMTVVTWAIKT*NMLSKNFKIKA Trigger: GGCTTTTATCTTGAAATTCTTAGATAACATGTTTCATGTCTTGATGGCCCAGGTGACAACTGTCATCATCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023344.10 |
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