RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC35A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031156

Ensembl transcript IDs: ENSMUST00000096514.11, ENSMUST00000115660.12, ENSMUST00000115663.10, ENSMUST00000123277.8, ENSMUST00000153620.3, ENSMUST00000155967.3, ENSMUST00000207114.2, ENSMUST00000208397.2, ENSMUST00000208633.2, ENSMUST00000208640.2, ENSMUST00000208718.2

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCAAAGACAGCCCAGGCACCTTCCATGCATGCACTTAAGTGTGCGTaGACACATCCACACACATCCCCACGCGCGCGCGAACACACACAC +
Preference number: 1 (lower is better)
Translates to: AKTAQAPSMHALKCA*THPHTSPRAREHTH
Trigger: GTGTGTGTGTTCGCGCGCGCGTGGGGATGTGTGTGGATGTGTGCACGCACACTTAAGTGCATGCATGGAAGGTGCCTGGGCTGTCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR CCA 90 bp CGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTaGGAGGGACTGTCCCAGGCATGCGAGACAGGACATCTCCAGCAC +
Preference number: 1 (lower is better)
Translates to: RYWRAAGLLSSLQDG*EGLSQACETGHLQH
Trigger: GTGCTGGAGATGTCCTGTCTCGCATGCCTGGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR GCA 90 bp GAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTaGAGGATGGCTGGGAGGGACTGTCCCAGGCATGCGAGACAGGAC +
Preference number: 1 (lower is better)
Translates to: ESLVVIGELQGFYPV*RMAGRDCPRHARQD
Trigger: GTCCTGTCTCGCATGCCTGGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR CCA 90 bp ATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTaGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAA +
Preference number: 1 (lower is better)
Translates to: MRDRTSPAQGHGGKA*NSSTPTLFPKRLAQ
Trigger: TTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR TCA 90 bp TATTGGAAAGCAAATGGCACTTATTGCACCCTCCCCAAGATGAGCTaGTGCGAAATCCTCAGCTTGTGCCTCTCTCCTCGTTCCGGGCAC +
Preference number: 1 (lower is better)
Translates to: YWKANGTYCTLPKMS*CEILSLCLSPRSGH
Trigger: GTGCCCGGAACGAGGAGAGAGGCACAAGCTGAGGATTTCGCATCAGCTCATCTTGGGGAGGGTGCAATAAGTGCCATTTGCTTTCCAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR TCA 90 bp CAAACTATTGGAAAGCAAATGGCACTTATTGCACCCTCCCCAAGATaGGCTGATGCGAAATCCTCAGCTTGTGCCTCTCTCCTCGTTCCG +
Preference number: 1 (lower is better)
Translates to: QTIGKQMALIAPSPR*ADAKSSACASLLVP
Trigger: CGGAACGAGGAGAGAGGCACAAGCTGAGGATTTCGCATCAGCTCATCTTGGGGAGGGTGCAATAAGTGCCATTTGCTTTCCAATAGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR TCA 90 bp AGGCCAGCATCTTCAAGTCCAGCAGCTACGACCCCTTCACCTTGGTaGGCAACCTGTGGTGAAAATGGGAAGGAAAGAGAAACACAGAAA +
Preference number: 1 (lower is better)
Translates to: RPASSSPAATTPSPW*ATCGENGKERETQK
Trigger: TTTCTGTGTTTCTCTTTCCTTCCCATTTTCACCACAGGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCTGGACTTGAAGATGCTGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR GCA 90 bp ATTCTGACACCCATCCTGAAAGGATGTTTTAAACGCCAATGGAGCTaGAGGCGGATCGGCAGCTTTAGTTTTTGTCTGGATGTTTCTGAA +
Preference number: 1 (lower is better)
Translates to: ILTPILKGCFKRQWS*RRIGSFSFCLDVSE
Trigger: TTCAGAAACATCCAGACAAAAACTAAAGCTGCCGATCCGCCTGCAGCTCCATTGGCGTTTAAAACATCCTTTCAGGATGGGTGTCAGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR CCA 90 bp GCTGGTAGTAAGCTACTAATCTTGGAGTTAGTAATGGTGCTTATGTaGAAAGAGCAGGCCCCTGGGTCAGAAAGCTACACATGGACTAAA +
Preference number: 1 (lower is better)
Translates to: AGSKLLILELVMVLM*KEQAPGSESYTWTK
Trigger: TTTAGTCCATGTGTAGCTTTCTGACCCAGGGGCCTGCTCTTTCCACATAAGCACCATTACTAACTCCAAGATTAGTAGCTTACTACCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp GGGTCTCTGTACCGGGGAAACTGCCCCAAAGCCACAGCAGAGACCACGCTGTTGCATGGGGGAAAGGCCTaGAATAGCAGTACCCCAACC +
Preference number: 2 (lower is better)
Translates to: GSLYRGNCPKATAETTLLHGGKA*NSSTPT
Trigger: GGTTGGGGTACTGCTATTCCAGGCCTTTCCCCCATG...CAACAGCGTGGTCTCTGCTGTGGCTTTGGGGCAGTTTCCCCGGTACAGAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp GGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTGGGAGGGACTGTCCCCTGGCAACAACTTTTTaGACCTGCAGAAGCCCAACC +
Preference number: 2 (lower is better)
Translates to: GELQGFYPVCRMAGRDCPLATTF*TCRSPT
Trigger: GGTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAG...GGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR TCA 90 bp GGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGCAGGAAGCGTTCATGTaGCATTCAGCCCTAGTTCCA +
Preference number: 2 (lower is better)
Translates to: GPGQEGRTKTGQHLQVQQQEAFM*HSALVP
Trigger: TGGAACTAGGGCTGAATGTCACATGAACGCTTCCTG...CTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp CACAGCAGAGACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGCATGGGGGAAAGGCCTaGAATAGCAGTACCCCAACC +
Preference number: 2 (lower is better)
Translates to: HSRDHAVVMIQGDGAGEKHGGKA*NSSTPT
Trigger: GGTTGGGGTACTGCTATTCCAGGCCTTTCCCCCATG...CTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCTGCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGAATCCAGTCTGCAGGATaGCTGGGAGGGACTGTCCCA +
Preference number: 2 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGIQSAG*LGGTVP
Trigger: TGGGACAGTCCCTCCCAGCCATCCTGCAGACTGGAT...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR CCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGACATGGGGGAAAGGCCTaGAATAGCAGTACCCCAACC +
Preference number: 2 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGHGGKA*NSSTPT
Trigger: GGTTGGGGTACTGCTATTCCAGGCCTTTCCCCCATG...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR CCA 90 bp TTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGCTGGCAACAACTTTTTaGACCTGCAGAAGCCCAACC +
Preference number: 2 (lower is better)
Translates to: LVMSALCGAGVGKDREFPLATTF*TCRSPT
Trigger: GGTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAG...CGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR GCA 90 bp GATCCAGTGGCCCTATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCACTGTACCGGGGAAACTaGCCCAAAGCCACAGCAGAG +
Preference number: 2 (lower is better)
Translates to: DPVALFTYSKDSPGTFHALYRGN*PKATAE
Trigger: CTCTGCTGTGGCTTTGGGGCAGTTTCCCCGGTACAG...TGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGGCCACTGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp AGCAGCTACGACCCCTTCACCTTGGTGAGCAACAACAGGCTGATTGCTCTTCAACATGGGGGAAAGGCCTaGAATAGCAGTACCCCAACC +
Preference number: 2 (lower is better)
Translates to: SSYDPFTLVSNNRLIALQHGGKA*NSSTPT
Trigger: GGTTGGGGTACTGCTATTCCAGGCCTTTCCCCCATG...TTGAAGAGCAATCAGCCTGTTGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
3UTR-3UTR TCA 90 bp TGGAGCTGCAGGCGGATCGGCAGCTTTAGTTTTTGTCTGGATGTTTCTGAAGAGCTCCCCAAGATGAGCTaGTGCGAAATCCTCAGCTTG +
Preference number: 2 (lower is better)
Translates to: WSCRRIGSFSFCLDVSEELPKMS*CEILSL
Trigger: CAAGCTGAGGATTTCGCATCAGCTCATCTTGGGGAG...CTCTTCAGAAACATCCAGACAAAAACTAAAGCTGCCGATCCGCCTGCAGCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGAACAAAAGCCAGGCCCTaGCAACAACTTTTTGGACCT +
Preference number: 2 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGTKARP*QQLFGP
Trigger: AGGTCCAAAAAGTTGTTGCCAGGGCCTGGCTTTTGT...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR GCA 90 bp GACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCTCATACTCGTTATTGGAGAGCTaGAGGGCTTTTATCCAGTCT +
Preference number: 2 (lower is better)
Translates to: DHAVVMIQGDGAGEKTSYSLLES*RAFIQS
Trigger: AGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGA...GTATGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR GCA 90 bp CGAACACACACACACACACACATCTGGGATACAGTTAAGGAGTTAATAAGCTTTTCCAACCCAACCCCCTaGCCTGTTCCCCCAACCACC +
Preference number: 2 (lower is better)
Translates to: RTHTHTHIWDTVKELISFSNPTP*PVPPTT
Trigger: GGTGGTTGGGGGAACAGGGCAGGGGGTTGGGTTGGA...AAAGCTTATTAACTCCTTAACTGTATCCCAGATGTGTGTGTGTGTGTGTGTTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp GGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTGGGAGGGACTGTCCCATCCCTCTAGAATTATaGGAGAAAATAAACCTCCAA +
Preference number: 2 (lower is better)
Translates to: GELQGFYPVCRMAGRDCPIPLEL*EKINLQ
Trigger: TTGGAGGTTTATTTTCTCCCATAATTCTAGAGGGAT...GGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR TCA 90 bp AGGTTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCAACACGCTGGATCATTaGTCTAATGATAGCACAAAC +
Preference number: 2 (lower is better)
Translates to: RLVMSALCGAGVGKDREFNTLDH*SNDSTN
Trigger: GTTTGTGCTATCATTAGATCAATGATCCAGCGTGTT...GAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR-3UTR TCA 90 bp GAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGCAGGAAGCGTTCATGTaGCATTCAGCCCTAGTTCCA +
Preference number: 2 (lower is better)
Translates to: ESLVVIGELQGFYPVCRMQEAFM*HSALVP
Trigger: TGGAACTAGGGCTGAATGTCACATGAACGCTTCCTG...CATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp GACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCTCATACGTCATTAGTCGTTATTaGAGAGCTGCAGGGCTTTTA +
Preference number: 2 (lower is better)
Translates to: DHAVVMIQGDGAGEKTSYVISRY*RAAGLL
Trigger: TAAAAGCCCTGCAGCTCTCCAATAACGACTAATGAC...GTATGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp GTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCACAAAAGCCAGGCCCTaGCAACAACTTTTTGGACCT +
Preference number: 2 (lower is better)
Translates to: VISRYWRAAGLLSSLQDGTKARP*QQLFGP
Trigger: AGGTCCAAAAAGTTGTTGCCAGGGCCTGGCTTTTGT...GCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp ACACGCTGGATCATTGATCTAATGATAGCACAAACAAATCTCCATCCCAAACTAAGTCTGCAGGATGGCTaGGAGGGACTGTCCCAGGCA +
Preference number: 2 (lower is better)
Translates to: TRWIIDLMIAQTNLHPKLSLQDG*EGLSQA
Trigger: TGCCTGGGACAGTCCCTCCCAGCCATCCTGCAGACT...TAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAGATCAATGATCCAGCGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp CGCAGGTTCCATGTTTCATCAATTCTGACACCCATCCTGAAAGGATGTTTTAAAATCCAGTCTGCAGGATaGCTGGGAGGGACTGTCCCA +
Preference number: 2 (lower is better)
Translates to: RRFHVSSILTPILKGCFKIQSAG*LGGTVP
Trigger: TGGGACAGTCCCTCCCAGCCATCCTGCAGACTGGAT...TTTAAAACATCCTTTCAGGATGGGTGTCAGAATTGATGAAACATGGAACCTGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp GTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAATCCCTCTAGAATTATaGGAGAAAATAAACCTCCAA +
Preference number: 2 (lower is better)
Translates to: VPVGPGQEGRTKTGQHLQIPLEL*EKINLQ
Trigger: TTGGAGGTTTATTTTCTCCCATAATTCTAGAGGGAT...TTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CCA 90 bp GATCCAGTGGCCCTATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCAGTCATTAGTCGTTATTaGAGAGCTGCAGGGCTTTTA +
Preference number: 2 (lower is better)
Translates to: DPVALFTYSKDSPGTFHAVISRY*RAAGLL
Trigger: TAAAAGCCCTGCAGCTCTCCAATAACGACTAATGAC...TGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGGCCACTGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp CAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTGCCCCAAAGCATCCCTCTAGAATTATaGGAGAAAATAAACCTCCAA +
Preference number: 2 (lower is better)
Translates to: QQADCSSRVSVPGKLPQSIPLEL*EKINLQ
Trigger: TTGGAGGTTTATTTTCTCCCATAATTCTAGAGGGAT...GCTTTGGGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR GCA 90 bp ACACGCTGGATCATTGATCTAATGATAGCACAAACAAATCTCCATCCCAAACTAACAACTTTTTGGACCTaGAGAAGCCCAACCCCCTCC +
Preference number: 2 (lower is better)
Translates to: TRWIIDLMIAQTNLHPKLTTFWT*RSPTPS
Trigger: GGAGGGGGTTGGGCTTCTGCAGGTCCAAAAAGTTGT...TAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAGATCAATGATCCAGCGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp TGTGGAAAGAGCAGGCCCCTGGGTCAGAAAGCTACACATGGACTAAATAAATACACACACACACACATCTaGGATACAGTTAAGGAGTTA +
Preference number: 2 (lower is better)
Translates to: CGKSRPLGQKATHGLNKYTHTHI*DTVKEL
Trigger: TAACTCCTTAACTGTATCCCAGATGTGTGTGTGTGT...GTATTTATTTAGTCCATGTGTAGCTTTCTGACCCAGGGGCCTGCTCTTTCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp CGAACACACACACACACACACATCTGGGATACAGTTAAGGAGTTAATAAGCTTTACAAAAGCCAGGCCCTaGCAACAACTTTTTGGACCT +
Preference number: 2 (lower is better)
Translates to: RTHTHTHIWDTVKELISFTKARP*QQLFGP
Trigger: AGGTCCAAAAAGTTGTTGCCAGGGCCTGGCTTTTGT...AAAGCTTATTAACTCCTTAACTGTATCCCAGATGTGTGTGTGTGTGTGTGTTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR CAA 90 bp ATCATTGATCTAATGATAGCACAAACAAATCTCCATCCCAAACTATaGGAAAGCAAATGGCACTTATTGCACCCTCCCCAAGATGAGCTG +
Preference number: 2 (lower is better)
Translates to: IIDLMIAQTNLHPKL*ESKWHLLHPPQDEL
Trigger: CAGCTCATCTTGGGGAGGGTGCAATAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAGATCAATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp CGCAGGTTCCATGTTTCATCAATTCTGACACCCATCCTGAAAGGATGTTTTAAAGTCATTAGTCGTTATTaGAGAGCTGCAGGGCTTTTA +
Preference number: 2 (lower is better)
Translates to: RRFHVSSILTPILKGCFKVISRY*RAAGLL
Trigger: TAAAAGCCCTGCAGCTCTCCAATAACGACTAATGAC...TTTAAAACATCCTTTCAGGATGGGTGTCAGAATTGATGAAACATGGAACCTGCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CCA 90 bp TATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCATGCACTTAAGTGTTCCATCCCAAACTATTaGAAAGCAAATGGCACTTAT +
Preference number: 2 (lower is better)
Translates to: YLHIAKTAQAPSMHALKCSIPNY*KANGTY
Trigger: ATAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGA...ACACTTAAGTGCATGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR GCA 90 bp ATGATAGCACAAACAAATCTCCATCCCAAACTATTGGAAAGCAAATGGCACTTATTACAACAGGCTGATTaGTCTTCAAGGGTCTCTGTA +
Preference number: 2 (lower is better)
Translates to: MIAQTNLHPKLLESKWHLLQQAD*SSRVSV
Trigger: TACAGAGACCCTTGAAGAGCAATCAGCCTGTTGTAA...TAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGAGATTTGTTTGTGCTATCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR GCA 90 bp ATCATTGATCTAATGATAGCACAAACAAATCTCCATCCCAAACTATTGGAAAGCTTACAACAGGCTGATTaGTCTTCAAGGGTCTCTGTA +
Preference number: 2 (lower is better)
Translates to: IIDLMIAQTNLHPKLLESLQQAD*SSRVSV
Trigger: TACAGAGACCCTTGAAGAGCAATCAGCCTGTTGTAA...GCTTTCCAATAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAGATCAATGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR GCA 72 bp GCCCAGGCACCTTCCATGCATGCACTTAAGTGTGCGTaGACACATCCACACACATCCCCACGCGCGCGCGAA +
Preference number: 3 (lower is better)
Translates to: AQAPSMHALKCA*THPHTSPRARE
Trigger: TTCGCGCGCGCGTGGGGATGTGTGTGGATGTGTGCACGCACACTTAAGTGCATGCATGGAAGGTGCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR CCA 72 bp TTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATaGCTGGGAGGGACTGTCCCAGGCATGCGAGACAGG +
Preference number: 3 (lower is better)
Translates to: LESCRAFIQSAG*LGGTVPGMRDR
Trigger: CCTGTCTCGCATGCCTGGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR GCA 72 bp GTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTaGAGGATGGCTGGGAGGGACTGTCCCAGGCATGCG +
Preference number: 3 (lower is better)
Translates to: VVIGELQGFYPV*RMAGRDCPRHA
Trigger: CGCATGCCTGGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR GCA 72 bp CGACCCCTTCACCTTGGTGAGCAACAACAGGCTGATTaGTCTTCAAGGGTCTCTGTACCGGGGAAACTGCCC +
Preference number: 3 (lower is better)
Translates to: RPLHLGEQQQAD*SSRVSVPGKLP
Trigger: GGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTGTTGCTCACCAAGGTGAAGGGGTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
3UTR CCA 72 bp AGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTaGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGG +
Preference number: 3 (lower is better)
Translates to: RTSPAQGHGGKA*NSSTPTLFPKR
Trigger: CCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR CAA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATACCTGGCAACAACTTTTaGGACCTGCAGAAGCCCAAC +
Preference number: 3 (lower is better)
Translates to: ACETGHLQHRVMGERPGIPGNNF*DLQKPN
Trigger: GTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAGG...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR TCA 72 bp TGCCCCAAAGCCACAGCAGAGACCACGCTGTTGTCATaGTCCAGGGTGATGGTGCAGGAGAGAAGACCTCAT +
Preference number: 3 (lower is better)
Translates to: CPKATAETTLLS*SRVMVQERRPH
Trigger: ATGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCTGCTGTGGCTTTGGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR TCA 72 bp GTGCCTCTCTCCTCGTTCCGGGCACTTACAACAGGCTaGTTGCTCTTCAAGGGTCTCTGTACCGGGGAAACT +
Preference number: 3 (lower is better)
Translates to: VPLSSFRALTTG*LLFKGLCTGET
Trigger: AGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTGTAAGTGCCCGGAACGAGGAGAGAGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR GCA 72 bp CTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTaGCCCAAAGCCACAGCAGAGACCACGCTGTTGTCA +
Preference number: 3 (lower is better)
Translates to: LIALQGSLYRGN*PKATAETTLLS
Trigger: TGACAACAGCGTGGTCTCTGCTGTGGCTTTGGGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR-3UTR CAA 90 bp AGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCACCTGGCAACAACTTTTaGGACCTGCAGAAGCCCAAC +
Preference number: 3 (lower is better)
Translates to: SWARARRENEDRPASSSPPGNNF*DLQKPN
Trigger: GTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAGG...TGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR TCA 72 bp GCAAATGGCACTTATTGCACCCTCCCCAAGATGAGCTaGTGCGAAATCCTCAGCTTGTGCCTCTCTCCTCGT +
Preference number: 3 (lower is better)
Translates to: ANGTYCTLPKMS*CEILSLCLSPR
Trigger: ACGAGGAGAGAGGCACAAGCTGAGGATTTCGCATCAGCTCATCTTGGGGAGGGTGCAATAAGTGCCATTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR TCA 72 bp GGAAAGCAAATGGCACTTATTGCACCCTCCCCAAGATaGGCTGATGCGAAATCCTCAGCTTGTGCCTCTCTC +
Preference number: 3 (lower is better)
Translates to: GKQMALIAPSPR*ADAKSSACASL
Trigger: GAGAGAGGCACAAGCTGAGGATTTCGCATCAGCTCATCTTGGGGAGGGTGCAATAAGTGCCATTTGCTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR CCA 72 bp GGAGCTGCAGGCGGATCGGCAGCTTTAGTTTTTGTCTaGATGTTTCTGAAGAGAATCCTTCGCCTCTGTCTC +
Preference number: 3 (lower is better)
Translates to: GAAGGSAALVFV*MFLKRILRLCL
Trigger: GAGACAGAGGCGAAGGATTCTCTTCAGAAACATCCAGACAAAAACTAAAGCTGCCGATCCGCCTGCAGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CAA 90 bp ATGGTGCAGGAGAGAAGACCTCATACAATAGGAAATGAACCCCACGAGGAGTCACCTGGCAACAACTTTTaGGACCTGCAGAAGCCCAAC +
Preference number: 3 (lower is better)
Translates to: MVQERRPHTIGNEPHEESPGNNF*DLQKPN
Trigger: GTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAGG...TGACTCCTCGTGGGGTTCATTTCCTATTGTATGAGGTCTTCTCTCCTGCACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR TCA 72 bp TCTTCAAGTCCAGCAGCTACGACCCCTTCACCTTGGTaGGCAACCTGTGGTGAAAATGGGAAGGAAAGAGAA +
Preference number: 3 (lower is better)
Translates to: SSSPAATTPSPW*ATCGENGKERE
Trigger: TTCTCTTTCCTTCCCATTTTCACCACAGGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCTGGACTTGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR TCA 72 bp GATGGTGCAGGAGAGAAGACCTCATACAATAGGAAATaGACCCCACGAGGAGTCATTAGTCGTTATTGGAGA +
Preference number: 3 (lower is better)
Translates to: DGAGEKTSYNRK*TPRGVISRYWR
Trigger: TCTCCAATAACGACTAATGACTCCTCGTGGGGTTCATTTCCTATTGTATGAGGTCTTCTCTCCTGCACCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
3UTR TCA 72 bp AGGAGAGGAGAGTCCATCTATCAGGAAGCGTTCATGTaGCATTCAGCCCTAGTTCCATATCCCTCTAGAATT +
Preference number: 3 (lower is better)
Translates to: RRGESIYQEAFM*HSALVPYPSRI
Trigger: AATTCTAGAGGGATATGGAACTAGGGCTGAATGTCACATGAACGCTTCCTGATAGATGGACTCTCCTCTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
3UTR-3UTR CAA 90 bp CCCTATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCATGCACTTAAGCTCCATCCCAAACTATaGGAAAGCAAATGGCACTTA +
Preference number: 3 (lower is better)
Translates to: PYLHIAKTAQAPSMHALKLHPKL*ESKWHL
Trigger: TAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGAG...CTTAAGTGCATGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR CCA 72 bp CAAACAAATCTCCATCCCAAACTATTGGAAAGCAAATaGCACTTATTGCACCCTCCCCAAGATGAGCTGATG +
Preference number: 3 (lower is better)
Translates to: QTNLHPKLLESK*HLLHPPQDELM
Trigger: CATCAGCTCATCTTGGGGAGGGTGCAATAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGAGATTTGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
3UTR-3UTR CAA 90 bp CGAACACACACACACACACACATCTGGGATACAGTTAAGGAGTTAATAAGCTTTCTCCATCCCAAACTATaGGAAAGCAAATGGCACTTA +
Preference number: 3 (lower is better)
Translates to: RTHTHTHIWDTVKELISFLHPKL*ESKWHL
Trigger: TAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGAG...AAAGCTTATTAACTCCTTAACTGTATCCCAGATGTGTGTGTGTGTGTGTGTTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR TCA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATACCCGCCCCCGGGTTCTaGTCCAGTGGCCGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: ACETGHLQHRVMGERPGIPAPGF*SSGRGP
Trigger: TGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGG...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp AGCAGAGACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCCCCGCCCCCGGGTTCTaGTCCAGTGGCCGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: SRDHAVVMIQGDGAGEKTPAPGF*SSGRGP
Trigger: TGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGG...GGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTGGGAGGGACTGTCCCGGTAGACAGCACCAATaGCGAGCCCAGCGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: GELQGFYPVCRMAGRDCPGRQHQ*RAQRPG
Trigger: CCCTGGGCGCTGGGCTCGTCATTGGTGCTGTCTACC...GGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp GGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTGGGAGGGACTGTCCCGAGGCTGCTGGTGAATaGAGGGCCCAGAGGCCGAGG +
Preference number: 4 (lower is better)
Translates to: GELQGFYPVCRMAGRDCPEAAGE*RAQRPR
Trigger: CCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTC...GGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp TTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGGACTGGCCACGGCGGTaGCCTCAGCCCACCAGAGCC +
Preference number: 4 (lower is better)
Translates to: LVMSALCGAGVGKDREFPDWPRR*PQPTRA
Trigger: GGCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTC...CGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp TATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTAGACTGGCCACGGCGGTaGCCTCAGCCCACCAGAGCC +
Preference number: 4 (lower is better)
Translates to: YVGQGLVRTGSSRVYLTLDWPRR*PQPTRA
Trigger: GGCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTC...TAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCGGCCCACTGCAGGCGTaGGAGGCTGCGATTCAACAT +
Preference number: 4 (lower is better)
Translates to: VGQGLVRTGSSRVYLTLPGPLQA*EAAIQH
Trigger: ATGTTGAATCGCAGCCTCTCACGCCTGCAGTGGGCC...GGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GATAAGAGTTTAGTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCCCGCCCCCGGGTTCTaGTCCAGTGGCCGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: DKSLVPVGPGQEGRTKTGPAPGF*SSGRGP
Trigger: TGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGG...GCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGACTAAACTCTTATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTGAGGCTGCTGGTGAATaGAGGGCCCAGAGGCCGAGG +
Preference number: 4 (lower is better)
Translates to: VMSALCGAGVGKDREFPCEAAGE*RAQRPR
Trigger: CCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTC...ACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACAGCAGAGAGGCCCACTaGAGGCGTGAGAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: ALCGAGVGKDREFPCLPHSREAH*RRERLR
Trigger: TCGCAGCCTCTCACGCCTGCAGTGGGCCTCTCTGCT...GTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp ATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACAGCTGCGGTGGTGGTaGCTGCCCAGGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: MSALCGAGVGKDREFPCLQLRWW*LPRRLL
Trigger: CAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTG...TAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGGGTCTCTGTACCGGGGAAACTGCCCCAAAGCCACAGCAGAGACCACGCTGTTCCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: RVSVPGKLPQSHSRDHAVPRLWL*LHLGEG
Trigger: GCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGG...AACAGCGTGGTCTCTGCTGTGGCTTTGGGGCAGTTTCCCCGGTACAGAGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGCCAAAGAAGAAGCCTTaGCTGGCCACGGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: GPGQEGRTKTGQHLQVQQPKKKP*LATAVP
Trigger: GGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGG...CTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGAGGCTGCTGGTGAATaGAGGGCCCAGAGGCCGAGG +
Preference number: 4 (lower is better)
Translates to: VPVGPGQEGRTKTGQHLQEAAGE*RAQRPR
Trigger: CCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTC...TTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTGGGAGGGACTGTCCCCCCACCAGCTTGCTGTaGCTGGACAATGGCGACACC +
Preference number: 4 (lower is better)
Translates to: GELQGFYPVCRMAGRDCPPTSLL*LDNGDT
Trigger: GGTGTCGCCATTGTCCAGGCACAGCAAGCTGGTGGG...GGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCC
61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp GCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACAGAAGAAGCCTTGACTaGCCACGGCGGTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: ALCGAGVGKDREFPCLPHRRSLD*PRRCPQ
Trigger: CTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCT...GTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGCTCCAAAGAAGAAGCCTTaGCTGGCCACGGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: ARARRENEDRPASSSPAAPKKKP*LATAVP
Trigger: GGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGG...AGCTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGGTTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCGGTAGACAGCACCAATaGCGAGCCCAGCGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: RLVMSALCGAGVGKDREFGRQHQ*RAQRPG
Trigger: CCCTGGGCGCTGGGCTCGTCATTGGTGCTGTCTACC...GAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp CAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGAGAGGCCCACTaGAGGCGTGAGAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: QLGQGKKGERRQASIFKSSREAH*RRERLR
Trigger: TCGCAGCCTCTCACGCCTGCAGTGGGCCTCTCTGCT...GGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATAAGCAGAGAGGCCCACTaGAGGCGTGAGAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: ACETGHLQHRVMGERPGISREAH*RRERLR
Trigger: TCGCAGCCTCTCACGCCTGCAGTGGGCCTCTCTGCT...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp GGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGCCCACCAGCTTGCTGTaGCTGGACAATGGCGACACC +
Preference number: 4 (lower is better)
Translates to: GPGQEGRTKTGQHLQVQQPTSLL*LDNGDT
Trigger: GGTGTCGCCATTGTCCAGGCACAGCAAGCTGGTGGG...CTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp CAAGGCAGAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTAGACTGGCCACGGCGGTaGCCTCAGCCCACCAGAGCC +
Preference number: 4 (lower is better)
Translates to: QGRGSSSKKLLQERRVHLDWPRR*PQPTRA
Trigger: GGCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTC...TAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTCTGCCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp GTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTGGAAAGTGGCAGCTaGCAGGTTGCTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: VGQGLVRTGSSRVYLTLPLESGS*QVADGN
Trigger: GTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAG...GGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTAGAAGAAGCCTTGACTaGCCACGGCGGTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: VMSALCGAGVGKDREFPCRRSLD*PRRCPQ
Trigger: CTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCT...ACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCTGGGAGGGACTGTCCCCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGT +
Preference number: 4 (lower is better)
Translates to: GELQGFYPVCRMAGRDCPQLAGC*WQHTGG
Trigger: ACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTG...GGGACAGTCCCTCCCAGCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp CAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGT +
Preference number: 4 (lower is better)
Translates to: QPYVGQGLVRTGSSRVYLQLAGC*WQHTGG
Trigger: ACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTG...GAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTGCCCCAAAGCCCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: QQADCSSRVSVPGKLPQSPRLWL*LHLGEG
Trigger: GCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGG...GCTTTGGGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTAGTCCCAGTTGGGCCACCCGCCCCCGGGTTCTaGTCCAGTGGCCGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: CLPHPTPNTDKSLVPVGPPAPGF*SSGRGP
Trigger: TGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGG...TGGCCCAACTGGGACTAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCTCATACGGTAGACAGCACCAATaGCGAGCCCAGCGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: DHAVVMIQGDGAGEKTSYGRQHQ*RAQRPG
Trigger: CCCTGGGCGCTGGGCTCGTCATTGGTGCTGTCTACC...GTATGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGCCTCGAGAAGACAGCTaGGGTGGTGGTGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: GLVRTGSSRVYLTLPLILPREDS*GGGGCP
Trigger: TGGGCAGCCACCACCACCGCAGCTGTCTTCTCGAGG...CAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp TTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGCCACTCCCACCAGCTTaGTGTGCCTGGACAATGGCG +
Preference number: 4 (lower is better)
Translates to: LVMSALCGAGVGKDREFPPLPPA*CAWTMA
Trigger: CGCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGG...CGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGTA +
Preference number: 4 (lower is better)
Translates to: ALCGAGVGKDREFPCLPHGYGFD*TSGKAV
Trigger: TACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCC...GTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATAAGAAGAAGCCTTGACTaGCCACGGCGGTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: ACETGHLQHRVMGERPGIRRSLD*PRRCPQ
Trigger: CTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCT...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGACCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGPRLWL*LHLGEG
Trigger: GCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGG...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp CCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCTCACTTGACCAGCACTaGCTTTGGCAGAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: PYVGQGLVRTGSSRVYLTSLDQH*LWQKGL
Trigger: GAGCCCTTTCTGCCAAAGTCAGTGCTGGTCAAGTGA...GGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CACCTTGGTGAGCAACAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGGGCCCACTGCAGGCGTaGGAGGCTGCGATTCAACAT +
Preference number: 4 (lower is better)
Translates to: HLGEQQQADCSSRVSVPGGPLQA*EAAIQH
Trigger: ATGTTGAATCGCAGCCTCTCACGCCTGCAGTGGGCC...CCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTGTTGCTCACCAAGGTG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGACCTCGAGAAGACAGCTaGGGTGGTGGTGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGPREDS*GGGGCP
Trigger: TGGGCAGCCACCACCACCGCAGCTGTCTTCTCGAGG...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp CTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGTA +
Preference number: 4 (lower is better)
Translates to: LCGAGVGKDREFPCLPHPGYGFD*TSGKAV
Trigger: TACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCC...AGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GGGTCTCTGTACCGGGGAAACTGCCCCAAAGCCACAGCAGAGACCACGCTGTTGATGAGGGAGGCATTCTaGACCACCAGCACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: GSLYRGNCPKATAETTLLMREAF*TTSTAK
Trigger: CTTAGCTGTGCTGGTGGTCCAGAATGCCTCCCTCAT...CAACAGCGTGGTCTCTGCTGTGGCTTTGGGGCAGTTTCCCCGGTACAGAGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACATGAGGGAGGCATTCTaGACCACCAGCACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: ALCGAGVGKDREFPCLPHMREAF*TTSTAK
Trigger: CTTAGCTGTGCTGGTGGTCCAGAATGCCTCCCTCAT...GTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: VGQGLVRTGSSRVYLTLPSVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...GGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGCTCCAGCTTGCTGTGCCTaGACAATGGCGACACCAGTG +
Preference number: 4 (lower is better)
Translates to: ARARRENEDRPASSSPAAPACCA*TMATPV
Trigger: CACTGGTGTCGCCATTGTCCAGGCACAGCAAGCTGG...AGCTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCACCAGCTTGCTGTGCCTaGACAATGGCGACACCAGTG +
Preference number: 4 (lower is better)
Translates to: WARARRENEDRPASSSPAPACCA*TMATPV
Trigger: CACTGGTGTCGCCATTGTCCAGGCACAGCAAGCTGG...TGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGAGAAGAAGCCTTGACTaGCCACGGCGGTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: GLVRTGSSRVYLTLPLILRRSLD*PRRCPQ
Trigger: CTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCT...CAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGT +
Preference number: 4 (lower is better)
Translates to: YVGQGLVRTGSSRVYLTLQLAGC*WQHTGG
Trigger: ACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTG...TAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGAGGCCCACTGCAGGCGTaGGAGGCTGCGATTCAACAT +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGGPLQA*EAAIQH
Trigger: ATGTTGAATCGCAGCCTCTCACGCCTGCAGTGGGCC...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp CAAGGCAGAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTACCAAAGAAGAAGCCTTaGCTGGCCACGGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: QGRGSSSKKLLQERRVHLPKKKP*LATAVP
Trigger: GGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGG...TAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTCTGCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGACCCACCAGCTTGCTGTaGCTGGACAATGGCGACACC +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGPTSLL*LDNGDT
Trigger: GGTGTCGCCATTGTCCAGGCACAGCAAGCTGGTGGG...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp GTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGTA +
Preference number: 4 (lower is better)
Translates to: VGPGQEGRTKTGQHLQVQGYGFD*TSGKAV
Trigger: TACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCC...CTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: QPYVGQGLVRTGSSRVYLSVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...GAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: CGAGVGKDREFPCLPHPTSVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...GGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp ATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACTGGAAAGTGGCAGCTaGCAGGTTGCTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: MSALCGAGVGKDREFPCLLESGS*QVADGN
Trigger: GTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAG...TAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTAGTCCCAGTTGGGCCACAGCTGCGGTGGTGGTaGCTGCCCAGGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: CLPHPTPNTDKSLVPVGPQLRWW*LPRRLL
Trigger: CAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTG...TGGCCCAACTGGGACTAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCCGGGTTCTGATCCAGTaGCCGTGGGCCACTCCCACC +
Preference number: 4 (lower is better)
Translates to: VISRYWRAAGLLSSLQDGRVLIQ*PWATPT
Trigger: GGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCG...GCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGCAGAGACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGT +
Preference number: 4 (lower is better)
Translates to: SRDHAVVMIQGDGAGEKTQLAGC*WQHTGG
Trigger: ACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTG...GGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATATCACTTGACCAGCACTaGCTTTGGCAGAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: ACETGHLQHRVMGERPGISLDQH*LWQKGL
Trigger: GAGCCCTTTCTGCCAAAGTCAGTGCTGGTCAAGTGA...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp CCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCGTCAGGATCTTCAGCTaGTATGTCACCTGGAAAGTG +
Preference number: 4 (lower is better)
Translates to: PYVGQGLVRTGSSRVYLTVRIFS*YVTWKV
Trigger: CACTTTCCAGGTGACATATCAGCTGAAGATCCTGAC...GGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CAAGGCAGAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTAGGCCCACTGCAGGCGTaGGAGGCTGCGATTCAACAT +
Preference number: 4 (lower is better)
Translates to: QGRGSSSKKLLQERRVHLGPLQA*EAAIQH
Trigger: ATGTTGAATCGCAGCCTCTCACGCCTGCAGTGGGCC...TAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTCTGCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp GTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTAAGCCACACAGAACCTaGGCTGCCTTTGAGGATCTT +
Preference number: 4 (lower is better)
Translates to: VMSALCGAGVGKDREFPCKPHRT*AAFEDL
Trigger: AAGATCCTCAAAGGCAGCTCAGGTTCTGTGTGGCTT...ACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp ATGGTGCAGGAGAGAAGACCTCATACAATAGGAAATGAACCCCACGAGGAGTCAGGTAGACAGCACCAATaGCGAGCCCAGCGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: MVQERRPHTIGNEPHEESGRQHQ*RAQRPG
Trigger: CCCTGGGCGCTGGGCTCGTCATTGGTGCTGTCTACC...TGACTCCTCGTGGGGTTCATTTCCTATTGTATGAGGTCTTCTCTCCTGCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGATCCACTCCCACCAGCTTaGTGTGCCTGGACAATGGCG +
Preference number: 4 (lower is better)
Translates to: VGKDREFPCLPHPTPNTDPLPPA*CAWTMA
Trigger: CGCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGG...ATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTAATGAGGGAGGCATTCTaGACCACCAGCACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: YVGQGLVRTGSSRVYLTLMREAF*TTSTAK
Trigger: CTTAGCTGTGCTGGTGGTCCAGAATGCCTCCCTCAT...TAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CCCTATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCATGCACTTAAGCAGCTGCGGTGGTGGTaGCTGCCCAGGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: PYLHIAKTAQAPSMHALKQLRWW*LPRRLL
Trigger: CAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTG...CTTAAGTGCATGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR CCA 90 bp TGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCCAGCTGCGGTGGTGGTaGCTGCCCAGGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: CRNSPKKYCKDSRSRGGPQLRWW*LPRRLL
Trigger: CAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTG...GGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp ATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCAACAACTCAGCTGCGGTGGTGGTaGCTGCCCAGGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: IMGENKPPTHKSQALATTQLRWW*LPRRLL
Trigger: CAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTG...AGTTGTTGCCAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp GACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTACGGGTTCTGATCCAGTaGCCGTGGGCCACTCCCACC +
Preference number: 4 (lower is better)
Translates to: DREFPCLPHPTPNTDKSLRVLIQ*PWATPT
Trigger: GGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCG...TAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGAGCCCACCAAAGGCTTaGTTTAGTACTACACCCCAG +
Preference number: 4 (lower is better)
Translates to: GPGQEGRTKTGQHLQVQQSPPKA*FSTTPQ
Trigger: CTGGGGTGTAGTACTAAACCAAGCCTTTGGTGGGCT...CTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GAGGTGGGCCCATTAACAGAGGTTAGTCATGTCAGCCCTATGTGGGGCAGGGGTAGCCAAAGAGGCGAATaGAGGCAACAGTGGACAGCA +
Preference number: 4 (lower is better)
Translates to: EVGPLTEVSHVSPMWGRGSQRGE*RQQWTA
Trigger: TGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCT...ACCCCTGCCCCACATAGGGCTGACATGACTAACCTCTGTTAATGGGCCCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTAGCCAAAGAGGCGAATaGAGGCAACAGTGGACAGCA +
Preference number: 4 (lower is better)
Translates to: PSWARARRENEDRPASSSSQRGE*RQQWTA
Trigger: TGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCT...ACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGCTTGGTGAGCAACTTTaGCAGAAAGGGCTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: LVMSALCGAGVGKDREFPLGEQL*QKGLRG
Trigger: ACCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAAG...CGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115663.10
ENSMUST00000153620.3
CDS-3UTR TCA 90 bp CAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTGCCCCAAAGCAGGGCACCGCAAGCTTaGGTGTGTCCACATATTGGA +
Preference number: 4 (lower is better)
Translates to: QQADCSSRVSVPGKLPQSRAPQA*VCPHIG
Trigger: TCCAATATGTGGACACACTCAAGCTTGCGGTGCCCT...GCTTTGGGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTGCCCCAAAGCTCACTTGACCAGCACTaGCTTTGGCAGAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: QQADCSSRVSVPGKLPQSSLDQH*LWQKGL
Trigger: GAGCCCTTTCTGCCAAAGTCAGTGCTGGTCAAGTGA...GCTTTGGGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGAGACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCTCACCACCAGCTCTCACTTaGCCAGCACTGACTTTGGCA +
Preference number: 4 (lower is better)
Translates to: RDHAVVMIQGDGAGEKTSPPALT*PALTLA
Trigger: TGCCAAAGTCAGTGCTGGTCAAGTGAGAGCTGGTGG...TGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR TCA 90 bp GGGTCTCTGTACCGGGGAAACTGCCCCAAAGCCACAGCAGAGACCACGCTGTTGAACCTGAGCTGCCTTTaGGGATCTTCTCAAAGTAGA +
Preference number: 4 (lower is better)
Translates to: GSLYRGNCPKATAETTLLNLSCL*GSSQSR
Trigger: TCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGGTT...CAACAGCGTGGTCTCTGCTGTGGCTTTGGGGCAGTTTCCCCGGTACAGAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp ATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTAAAGCCACACAGAACCTaGGCTGCCTTTGAGGATCTT +
Preference number: 4 (lower is better)
Translates to: MSALCGAGVGKDREFPCLKPHRT*AAFEDL
Trigger: AAGATCCTCAAAGGCAGCTCAGGTTCTGTGTGGCTT...TAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACTGTTGTCAGCATACTTaGCAACAACAGCCACCAGAA +
Preference number: 4 (lower is better)
Translates to: ALCGAGVGKDREFPCLPHCCQHT*QQQPPE
Trigger: TTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACA...GTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAAGGTGGCAAAGCCCTTaGGGATGTTGTCAGCATACT +
Preference number: 4 (lower is better)
Translates to: WARARRENEDRPASSSPARWQSP*GCCQHT
Trigger: AGTATGCTGACAACATCCTCAAGGGCTTTGCCACCT...TGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTAGTCCCACCTCGAGAAGACAGCTaGGGTGGTGGTGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: EFPCLPHPTPNTDKSLVPPREDS*GGGGCP
Trigger: TGGGCAGCCACCACCACCGCAGCTGTCTTCTCGAGG...TGGGACTAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GATGAGCTGATGCGAAATCCTCAGCTTGTGCCTCTCTCCTCGTTCCGGGCACTTACAACTTTTTGGACCTaGAGAAGCCCAACCCCCTCC +
Preference number: 4 (lower is better)
Translates to: DELMRNPQLVPLSSFRALTTFWT*RSPTPS
Trigger: GGAGGGGGTTGGGCTTCTGCAGGTCCAAAAAGTTGT...AAGTGCCCGGAACGAGGAGAGAGGCACAAGCTGAGGATTTCGCATCAGCTCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR GCA 90 bp GAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTATCAGGAACCACTCCCACCAGCTTaGTGTGCCTGGACAATGGCG +
Preference number: 4 (lower is better)
Translates to: EEAALKSSSRRGESIYQEPLPPA*CAWTMA
Trigger: CGCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGG...TTCCTGATAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp AGGTTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCATGAGGGAGGCATTCTaGACCACCAGCACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: RLVMSALCGAGVGKDREFMREAF*TTSTAK
Trigger: CTTAGCTGTGCTGGTGGTCCAGAATGCCTCCCTCAT...GAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGACTGGAAAGTGGCAGCTaGCAGGTTGCTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGLESGS*QVADGN
Trigger: GTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAG...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp CAAGGCAGAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTACCAGCTTGCTGTGCCTaGACAATGGCGACACCAGTG +
Preference number: 4 (lower is better)
Translates to: QGRGSSSKKLLQERRVHLPACCA*TMATPV
Trigger: CACTGGTGTCGCCATTGTCCAGGCACAGCAAGCTGG...TAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTCTGCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp ATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCAACAACTCGGGTTCTGATCCAGTaGCCGTGGGCCACTCCCACC +
Preference number: 4 (lower is better)
Translates to: IMGENKPPTHKSQALATTRVLIQ*PWATPT
Trigger: GGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCG...AGTTGTTGCCAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp GACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCTCATACTCACTTGACCAGCACTaGCTTTGGCAGAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: DHAVVMIQGDGAGEKTSYSLDQH*LWQKGL
Trigger: GAGCCCTTTCTGCCAAAGTCAGTGCTGGTCAAGTGA...GTATGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTGCCCCAAAGCAAGCCACACAGAACCTaGGCTGCCTTTGAGGATCTT +
Preference number: 4 (lower is better)
Translates to: QQADCSSRVSVPGKLPQSKPHRT*AAFEDL
Trigger: AAGATCCTCAAAGGCAGCTCAGGTTCTGTGTGGCTT...GCTTTGGGGCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp GATCCAGTGGCCCTATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCAGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: DPVALFTYSKDSPGTFHAGYGFD*TSGKAG
Trigger: TCCAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCC...TGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGGCCACTGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR GCA 90 bp ATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCAACAACTCCTCGAGAAGACAGCTaGGGTGGTGGTGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: IMGENKPPTHKSQALATTPREDS*GGGGCP
Trigger: TGGGCAGCCACCACCACCGCAGCTGTCTTCTCGAGG...AGTTGTTGCCAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp GCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCAAGCAGAGAGGCCCACTaGAGGCGTGAGAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: AETHLRNTVKIAGVEVGPSREAH*RRERLR
Trigger: TCGCAGCCTCTCACGCCTGCAGTGGGCCTCTCTGCT...TGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: ALCGAGVGKDREFPCLPHLMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...GTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp AACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACCAGCTGCGGTGGTGGTaGCTGCCCAGGAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: NSPKKYCKDSRSRGGPINQLRWW*LPRRLL
Trigger: CAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTG...GTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAGAGCGGGTTCTGATCCAGTaGCCGTGGGCCACTCCCACC +
Preference number: 4 (lower is better)
Translates to: HLRNTVKIAGVEVGPLTERVLIQ*PWATPT
Trigger: GGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCG...CTCTGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
3UTR CAA 72 bp AGCATCTTCAAGTCCAGCAGCTACGACCCCTTCACCTaGGTGAGCAACAACAGGCTGATTGCTCTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: SIFKSSSYDPFT*VSNNRLIALQG
Trigger: CCCTTGAAGAGCAATCAGCCTGTTGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCTGGACTTGAAGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAGAGCCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: HLRNTVKIAGVEVGPLTEPRLWL*LHLGEG
Trigger: GCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGG...CTCTGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TTTAGTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTGTCAGGATCTTCAGCTaGTATGTCACCTGGAAAGTG +
Preference number: 4 (lower is better)
Translates to: FSPSWARARRENEDRPASVRIFS*YVTWKV
Trigger: CACTTTCCAGGTGACATATCAGCTGAAGATCCTGAC...AGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGACTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATAAACCTGAGCTGCCTTTaGGGATCTTCTCAAAGTAGA +
Preference number: 4 (lower is better)
Translates to: ACETGHLQHRVMGERPGINLSCL*GSSQSR
Trigger: TCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGGTT...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp GTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAATGTTGTCAGCATACTTaGCAACAACAGCCACCAGAA +
Preference number: 4 (lower is better)
Translates to: VPVGPGQEGRTKTGQHLQCCQHT*QQQPPE
Trigger: TTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACA...TTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CGCCTCTGTCTCGTCAATTACATGAGATTCAGCCACTTCAAGGACCTCCCCTCCAGGTGGCAAAGCCCTTaGGGATGTTGTCAGCATACT +
Preference number: 4 (lower is better)
Translates to: RLCLVNYMRFSHFKDLPSRWQSP*GCCQHT
Trigger: AGTATGCTGACAACATCCTCAAGGGCTTTGCCACCT...GGAGGGGAGGTCCTTGAAGTGGCTGAATCTCATGTAATTGACGAGACAGAGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
CDS-3UTR GCA 90 bp GAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAGAGGCTGCTGGTGAATaGAGGGCCCAGAGGCCGAGG +
Preference number: 4 (lower is better)
Translates to: ETHLRNTVKIAGVEVGPLEAAGE*RAQRPR
Trigger: CCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTC...TAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp ACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAGAGGCTGCTGGTGAATaGAGGGCCCAGAGGCCGAGG +
Preference number: 4 (lower is better)
Translates to: THLRNTVKIAGVEVGPLTEAAGE*RAQRPR
Trigger: CCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTC...TGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp TTCCCGTGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTAGTCCCAGTTCCCACCAGCTTGCTGTaGCTGGACAATGGCGACACC +
Preference number: 4 (lower is better)
Translates to: FPCLPHPTPNTDKSLVPVPTSLL*LDNGDT
Trigger: GGTGTCGCCATTGTCCAGGCACAGCAAGCTGGTGGG...AACTGGGACTAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp AGGCTGCGATTCAACATGAGCACAGAGAAGAGCGCTGTAGTCAGGATCTTCAGCACAGCCCCTCTTTTGTaGGAAGAGCAGCAGGAGACA +
Preference number: 4 (lower is better)
Translates to: RLRFNMSTEKSAVVRIFSTAPLL*EEQQET
Trigger: TGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGCTGT...GCTGAAGATCCTGACTACAGCGCTCTTCTCTGTGCTCATGTTGAATCGCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208640.2
CDS-3UTR CCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGAAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGSVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp TTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGATACTGGAAAGTGGCAGCTaGCAGGTTGCTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: LVRTGSSRVYLTLPLILILESGS*QVADGN
Trigger: GTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAG...TATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTATCAGGAACTGGAAAGTGGCAGCTaGCAGGTTGCTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: EEAALKSSSRRGESIYQELESGS*QVADGN
Trigger: GTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAG...TTCCTGATAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp GGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGAATAATGGGTCCAGGTaGAAGCCAAAGAGGCGAATG +
Preference number: 4 (lower is better)
Translates to: GLVRTGSSRVYLTLPLILNNGSR*KPKRRM
Trigger: CATTCGCCTCTTTGGCTTCCACCTGGACCCATTATT...CAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CGTGAGAGGCTGCGATTCAACATGAGCACAGAGAAGAGCGCTGTAGTCAGGATCAGTGTGTCCACATATTaGACCAGGACAGCCCCTCTT +
Preference number: 4 (lower is better)
Translates to: RERLRFNMSTEKSAVVRISVSTY*TRTAPL
Trigger: AAGAGGGGCTGTCCTGGTCCAATATGTGGACACACT...GATCCTGACTACAGCGCTCTTCTCTGTGCTCATGTTGAATCGCAGCCTCTCACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208640.2
CDS-3UTR TCA 90 bp TGGAGCTGCAGGCGGATCGGCAGCTTTAGTTTTTGTCTGGATGTTTCTGAAGAGAGGGCACCGCAAGCTTaGGTGTGTCCACATATTGGA +
Preference number: 4 (lower is better)
Translates to: WSCRRIGSFSFCLDVSEERAPQA*VCPHIG
Trigger: TCCAATATGTGGACACACTCAAGCTTGCGGTGCCCT...CTCTTCAGAAACATCCAGACAAAAACTAAAGCTGCCGATCCGCCTGCAGCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR TCA 90 bp GAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGT +
Preference number: 4 (lower is better)
Translates to: ESLVVIGELQGFYPVCRMQLAGC*WQHTGG
Trigger: ACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTG...CATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTCCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: RNSPKKYCKDSRSRGGPIPRLWL*LHLGEG
Trigger: GCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGG...AATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGAGACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCTCAGTCAGGATCTTCAGCTaGTATGTCACCTGGAAAGTG +
Preference number: 4 (lower is better)
Translates to: RDHAVVMIQGDGAGEKTSVRIFS*YVTWKV
Trigger: CACTTTCCAGGTGACATATCAGCTGAAGATCCTGAC...TGAGGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGGTTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCAACCTGAGCTGCCTTTaGGGATCTTCTCAAAGTAGA +
Preference number: 4 (lower is better)
Translates to: RLVMSALCGAGVGKDREFNLSCL*GSSQSR
Trigger: TCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGGTT...GAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CAAGGCAGAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTAAGGTGGCAAAGCCCTTaGGGATGTTGTCAGCATACT +
Preference number: 4 (lower is better)
Translates to: QGRGSSSKKLLQERRVHLRWQSP*GCCQHT
Trigger: AGTATGCTGACAACATCCTCAAGGGCTTTGCCACCT...TAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTCTGCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp AAAAATAAAGATCCAGTGGCCCTATTTACATATAGCAAAGACAGCCCAGGCACCCCTCGAGAAGACAGCTaGGGTGGTGGTGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: KNKDPVALFTYSKDSPGTPREDS*GGGGCP
Trigger: TGGGCAGCCACCACCACCGCAGCTGTCTTCTCGAGG...GGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGGCCACTGGATCTTTATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR GCA 90 bp AGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTCCTCGAGAAGACAGCTaGGGTGGTGGTGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: RNSPKKYCKDSRSRGGPIPREDS*GGGGCP
Trigger: TGGGCAGCCACCACCACCGCAGCTGTCTTCTCGAGG...AATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp TCTAATGATAGCACAAACAAATCTCCATCCCAAACTATTGGAAAGCAAATGGCAGACTGGCCACGGCGGTaGCCTCAGCCCACCAGAGCC +
Preference number: 4 (lower is better)
Translates to: SNDSTNKSPSQTIGKQMADWPRR*PQPTRA
Trigger: GGCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTC...TGCCATTTGCTTTCCAATAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
CDS-3UTR CCA 90 bp AGCAGCTACGACCCCTTCACCTTGGTGAGCAACAACAGGCTGATTGCTCTTCAAAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: SSYDPFTLVSNNRLIALQSVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...TTGAAGAGCAATCAGCCTGTTGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp ATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: MSALCGAGVGKDREFPCLLMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...TAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp TTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGCTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: LVMSALCGAGVGKDREFPLMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...CGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: VGPGQEGRTKTGQHLQVQLMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...CTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GCATGCGAGACAGGACATCTCCAGCACAGGGTCATGGGGGAAAGGCCTGGAATACTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: ACETGHLQHRVMGERPGILMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...TATTCCAGGCCTTTCCCCCATGACCCTGTGCTGGAGATGTCCTGTCTCGCATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp GAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTATCAGGAAAAGCCACACAGAACCTaGGCTGCCTTTGAGGATCTT +
Preference number: 4 (lower is better)
Translates to: EEAALKSSSRRGESIYQEKPHRT*AAFEDL
Trigger: AAGATCCTCAAAGGCAGCTCAGGTTCTGTGTGGCTT...TTCCTGATAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp ATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCAAAGAAGAAGCCTTaGCTGGCCACGGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: ICRNSPKKYCKDSRSRGGPKKKP*LATAVP
Trigger: GGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGG...CCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGATGTTGTCAGCATACTTaGCAACAACAGCCACCAGAA +
Preference number: 4 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGCCQHT*QQQPPE
Trigger: TTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACA...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR GCA 90 bp GAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTACCACTCCCACCAGCTTaGTGTGCCTGGACAATGGCG +
Preference number: 4 (lower is better)
Translates to: ETHLRNTVKIAGVEVGPLPLPPA*CAWTMA
Trigger: CGCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGG...TAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp ATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCAACAACTGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGTA +
Preference number: 4 (lower is better)
Translates to: IMGENKPPTHKSQALATTGYGFD*TSGKAV
Trigger: TACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCC...AGTTGTTGCCAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp TTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGATAAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: LVRTGSSRVYLTLPLILISVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...TATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CCCTATTTACATATAGCAAAGACAGCCCAGGCACCTTCCATGCATGCACTTAAGCTGGAAAGTGGCAGCTaGCAGGTTGCTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: PYLHIAKTAQAPSMHALKLESGS*QVADGN
Trigger: GTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAG...CTTAAGTGCATGCATGGAAGGTGCCTGGGCTGTCTTTGCTATATGTAAATAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR CCA 90 bp GTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGGCAGCCCACCAAAGGCTTaGTTTAGTACTACACCCCAG +
Preference number: 4 (lower is better)
Translates to: VISRYWRAAGLLSSLQDGSPPKA*FSTTPQ
Trigger: CTGGGGTGTAGTACTAAACCAAGCCTTTGGTGGGCT...GCCATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGAGCCAAAGAGGCGAATaGAGGCAACAGTGGACAGCA +
Preference number: 4 (lower is better)
Translates to: PSRIMGENKPPTHKSQALSQRGE*RQQWTA
Trigger: TGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCT...CAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp TGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTAGTCCCAGTTGGGCCACTTGGTGAGCAACTTTaGCAGAAAGGGCTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: CLPHPTPNTDKSLVPVGPLGEQL*QKGLRG
Trigger: ACCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAAG...TGGCCCAACTGGGACTAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115663.10
CDS-3UTR TCA 90 bp TGTCTACCTCACCCTACCCCTAATACTGATAAGAGTTTAGTCCCAGTTGGGCCAAGGTGGCAAAGCCCTTaGGGATGTTGTCAGCATACT +
Preference number: 4 (lower is better)
Translates to: CLPHPTPNTDKSLVPVGPRWQSP*GCCQHT
Trigger: AGTATGCTGACAACATCCTCAAGGGCTTTGCCACCT...TGGCCCAACTGGGACTAAACTCTTATCAGTATTAGGGGTAGGGTGAGGTAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp TTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: FAETHLRNTVKIAGVEVGGYGFD*TSGKAG
Trigger: TCCAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCC...GCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153620.3
CDS-3UTR CCA 90 bp ATGGTGCAGGAGAGAAGACCTCATACAATAGGAAATGAACCCCACGAGGAGTCACTGGCAACAACTTTTTaGACCTGCAGAAGCCCAACC +
Preference number: 4 (lower is better)
Translates to: MVQERRPHTIGNEPHEESLATTF*TCRSPT
Trigger: GGTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAG...TGACTCCTCGTGGGGTTCATTTCCTATTGTATGAGGTCTTCTCTCCTGCACCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR CCA 90 bp AACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACCCAGCTTGCTGTGCCTaGACAATGGCGACACCAGTG +
Preference number: 4 (lower is better)
Translates to: NSPKKYCKDSRSRGGPINPACCA*TMATPV
Trigger: CACTGGTGTCGCCATTGTCCAGGCACAGCAAGCTGG...GTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGAGCCCACCAAAGGCTTaGTTTAGTACTACACCCCAG +
Preference number: 4 (lower is better)
Translates to: PSRIMGENKPPTHKSQALSPPKA*FSTTPQ
Trigger: CTGGGGTGTAGTACTAAACCAAGCCTTTGGTGGGCT...CAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CCA 90 bp TGGAGCTGCAGGCGGATCGGCAGCTTTAGTTTTTGTCTGGATGTTTCTGAAGAGAATAATGGGTCCAGGTaGAAGCCAAAGAGGCGAATG +
Preference number: 4 (lower is better)
Translates to: WSCRRIGSFSFCLDVSEENNGSR*KPKRRM
Trigger: CATTCGCCTCTTTGGCTTCCACCTGGACCCATTATT...CTCTTCAGAAACATCCAGACAAAAACTAAAGCTGCCGATCCGCCTGCAGCTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
CDS-3UTR CCA 90 bp GAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTATCAGGAAAATAATGGGTCCAGGTaGAAGCCAAAGAGGCGAATG +
Preference number: 4 (lower is better)
Translates to: EEAALKSSSRRGESIYQENNGSR*KPKRRM
Trigger: CATTCGCCTCTTTGGCTTCCACCTGGACCCATTATT...TTCCTGATAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp CACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAGAGAGGGCACCGCAAGCTTaGGTGTGTCCACATATTGGA +
Preference number: 4 (lower is better)
Translates to: HLRNTVKIAGVEVGPLTERAPQA*VCPHIG
Trigger: TCCAATATGTGGACACACTCAAGCTTGCGGTGCCCT...CTCTGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp AGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGT +
Preference number: 4 (lower is better)
Translates to: RNSPKKYCKDSRSRGGPIQLAGC*WQHTGG
Trigger: ACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTG...AATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TTATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGCCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LFAETHLRNTVKIAGVEVPRLWL*LHLGEG
Trigger: GCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGG...CACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp TTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCACCCCTTCACCTTGGTaGGCAACCTGGAAAGTGGCA +
Preference number: 4 (lower is better)
Translates to: FAETHLRNTVKIAGVEVGTPSPW*ATWKVA
Trigger: TGCCACTTTCCAGGTTGCTCACCAAGGTGAAGGGGT...GCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123277.8
CDS-3UTR GCA 90 bp CCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGATTACCCCTCTTTTGTaGGAAGAGCAGCAGGAGACA +
Preference number: 4 (lower is better)
Translates to: PSRIMGENKPPTHKSQALITPLL*EEQQET
Trigger: TGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAAT...CAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp GAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCAGGATGACAAAAGCCAGGCCCTaGCAACAACTTTTTGGACCT +
Preference number: 4 (lower is better)
Translates to: ESLVVIGELQGFYPVCRMTKARP*QQLFGP
Trigger: AGGTCCAAAAAGTTGTTGCCAGGGCCTGGCTTTTGT...CATCCTGCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR TCA 90 bp AGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAGGGCACCGCAAGCTTaGGTGTGTCCACATATTGGA +
Preference number: 4 (lower is better)
Translates to: RNSPKKYCKDSRSRGGPIRAPQA*VCPHIG
Trigger: TCCAATATGTGGACACACTCAAGCTTGCGGTGCCCT...AATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp CATCATCTTTATTTGGCATTGGGTATCCTGACATTTGTTCATTACAGTTCCTTATCCAACCCAACCCCCTaGCCTGTTCCCCCAACCACC +
Preference number: 4 (lower is better)
Translates to: HHLYLALGILTFVHYSSLSNPTP*PVPPTT
Trigger: GGTGGTTGGGGGAACAGGGCAGGGGGTTGGGTTGGA...TAAGGAACTGTAATGAACAAATGTCAGGATACCCAATGCCAAATAAAGATGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR CCA 90 bp CACGAGGAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCCTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: HEESLVVIGELQGFYPVCLMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...GCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTCCTCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp ACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAAGCCAAAGAGGCGAATaGAGGCAACAGTGGACAGCA +
Preference number: 4 (lower is better)
Translates to: THLRNTVKIAGVEVGPLTSQRGE*RQQWTA
Trigger: TGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCT...TGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp ATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGAGGGCACCGCAAGCTTaGGTGTGTCCACATATTGGA +
Preference number: 4 (lower is better)
Translates to: ICRNSPKKYCKDSRSRGGRAPQA*VCPHIG
Trigger: TCCAATATGTGGACACACTCAAGCTTGCGGTGCCCT...CCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp ATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCAACAACTAACCTGAGCTGCCTTTaGGGATCTTCTCAAAGTAGA +
Preference number: 4 (lower is better)
Translates to: IMGENKPPTHKSQALATTNLSCL*GSSQSR
Trigger: TCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGGTT...AGTTGTTGCCAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp ATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGACCCCTTCACCTTGGTaGGCAACTTTGGCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: ICRNSPKKYCKDSRSRGGTPSPW*ATLAER
Trigger: CCTTTCTGCCAAAGTTGCTCACCAAGGTGAAGGGGT...CCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115663.10
ENSMUST00000153620.3
CDS-3UTR GCA 90 bp GGCAGCTTTAGTTTTTGTCTGGATGTTTCTGAAGAGAATCCTTCGCCTCTGTCTATTACCCCTCTTTTGTaGGAAGAGCAGCAGGAGACA +
Preference number: 4 (lower is better)
Translates to: GSFSFCLDVSEENPSPLSITPLL*EEQQET
Trigger: TGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAAT...AGACAGAGGCGAAGGATTCTCTTCAGAAACATCCAGACAAAAACTAAAGCTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR CCA 90 bp ATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGATGAGGGAGGCATTCTaGACCACCAGCACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: ICRNSPKKYCKDSRSRGGMREAF*TTSTAK
Trigger: CTTAGCTGTGCTGGTGGTCCAGAATGCCTCCCTCAT...CCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR GCA 90 bp AACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACATTACCCCTCTTTTGTaGGAAGAGCAGCAGGAGACA +
Preference number: 4 (lower is better)
Translates to: NSPKKYCKDSRSRGGPINITPLL*EEQQET
Trigger: TGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAAT...GTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CGCAGGTTCCATGTTTCATCAATTCTGACACCCATCCTGAAAGGATGTTTTAAAAGTGTGTCCACATATTaGACCAGGACAGCCTCATGG +
Preference number: 4 (lower is better)
Translates to: RRFHVSSILTPILKGCFKSVSTY*TRTASW
Trigger: CCATGAGGCTGTCCTGGTCCAATATGTGGACACACT...TTTAAAACATCCTTTCAGGATGGGTGTCAGAATTGATGAAACATGGAACCTGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR TCA 90 bp TTCCATATCCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCGTCAGGATCTTCAGCTaGTATGTCACCTGGAAAGTG +
Preference number: 4 (lower is better)
Translates to: FHIPLELWEKINLQPTKAVRIFS*YVTWKV
Trigger: CACTTTCCAGGTGACATATCAGCTGAAGATCCTGAC...GGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGGATATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR TCA 90 bp TTATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGACCCCTTCACCTTGGTaGGCAACTTTGGCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: LFAETHLRNTVKIAGVEVTPSPW*ATLAER
Trigger: CCTTTCTGCCAAAGTTGCTCACCAAGGTGAAGGGGT...CACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115663.10
ENSMUST00000153620.3
CDS-3UTR GCA 90 bp ATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGATTACCCCTCTTTTGTaGGAAGAGCAGCAGGAGACA +
Preference number: 4 (lower is better)
Translates to: ICRNSPKKYCKDSRSRGGITPLL*EEQQET
Trigger: TGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAAT...CCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAGAGCTGATGGCAACATACTaGAGGTTATTCTGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: HLRNTVKIAGVEVGPLTELMATY*RLFCKV
Trigger: TACCTTGCAGAATAACCTCCAGTATGTTGCCATCAG...CTCTGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR TCA 90 bp CGCAGGTTCCATGTTTCATCAATTCTGACACCCATCCTGAAAGGATGTTTTAAATGTTGTCAGCATACTTaGCAACAACAGCCACCAGAA +
Preference number: 4 (lower is better)
Translates to: RRFHVSSILTPILKGCFKCCQHT*QQQPPE
Trigger: TTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACA...TTTAAAACATCCTTTCAGGATGGGTGTCAGAATTGATGAAACATGGAACCTGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
3UTR CAA 72 bp CTAATGATAGCACAAACAAATCTCCATCCCAAACTATaGGAAAGCAAATGGCACTTATTGCACCCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: LMIAQTNLHPKL*ESKWHLLHPPQ
Trigger: TTGGGGAGGGTGCAATAAGTGCCATTTGCTTTCCAATAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR GCA 90 bp TTATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGATTACCCCTCTTTTGTaGGAAGAGCAGCAGGAGACA +
Preference number: 4 (lower is better)
Translates to: LFAETHLRNTVKIAGVEVITPLL*EEQQET
Trigger: TGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAAT...CACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CCA 90 bp CATCATCTTTATTTGGCATTGGGTATCCTGACATTTGTTCATTACAGTTCCTTAAGCCCACCAAAGGCTTaGTTTAGTACTACACCCCAG +
Preference number: 4 (lower is better)
Translates to: HHLYLALGILTFVHYSSLSPPKA*FSTTPQ
Trigger: CTGGGGTGTAGTACTAAACCAAGCCTTTGGTGGGCT...TAAGGAACTGTAATGAACAAATGTCAGGATACCCAATGCCAAATAAAGATGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
CDS TCA 90 bp GAGAGACAGGAGGCCACAACTGCCGCTAAGCCCGCCCCCGGGTTCTaGTCCAGTGGCCGTGGGCCACTCCCACCAGCTTGCTGTGCCTGG +
Preference number: 5 (lower is better)
Translates to: ERQEATTAAKPAPGF*SSGRGPLPPACCAW
Trigger: CCAGGCACAGCAAGCTGGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGGCTTAGCGGCAGTTGTGGCCTCCTGTCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS GCA 90 bp CGGCGGTGCCCTCAGCCCACCAGAGCCCCACCAGGCCCAGCGCTGTaGCAAAGAGGCCGAGCTGTAGGTTACGAAGCCACACAGAACCTG +
Preference number: 5 (lower is better)
Translates to: RRCPQPTRAPPGPAL*QRGRAVGYEATQNL
Trigger: CAGGTTCTGTGTGGCTTCGTAACCTACAGCTCGGCCTCTTTGGCACAGCGCTGGGCCTGGTGGGGCTCTGGTGGGCTGAGGGCACCGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS CCA 90 bp CTACACCCCAGACAGCAGGTGTGTACCCAAAGAAGAAGCCTTGACTaGCCACGGCGGTGCCCTCAGCCCACCAGAGCCCCACCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: LHPRQQVCTQRRSLD*PRRCPQPTRAPPGP
Trigger: TGGGCCTGGTGGGGCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGGGTACACACCTGCTGTCTGGGGTGTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS TCA 90 bp AGTACTACACCCCAGACAGCAGGTGTGTACCCAAAGAAGAAGCCTTaGCTGGCCACGGCGGTGCCCTCAGCCCACCAGAGCCCCACCAGG +
Preference number: 5 (lower is better)
Translates to: STTPQTAGVYPKKKP*LATAVPSAHQSPTR
Trigger: CCTGGTGGGGCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGGGTACACACCTGCTGTCTGGGGTGTAGTACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp TGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: CGAGVGKDREFPCLPHPTAEAMA*TAPRGR
Trigger: CCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGC...GGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS GCA 90 bp GTGAATGCAGGGCCCAGAGGCCGAGGCCGAGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGTAGAGGTAGACAGCACCAATGACGAG +
Preference number: 5 (lower is better)
Translates to: VNAGPRGRGRGYGFD*TSGKAVEVDSTNDE
Trigger: CTCGTCATTGGTGCTGTCTACCTCTACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGCCTCGGCCTCTGGGCCCTGCATTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS-3UTR CAA 90 bp GCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAGCAGCTGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: ARARRENEDRPASSSPAAAEAMA*TAPRGR
Trigger: CCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGC...AGCTGCTGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS TCA 90 bp TTCTGGACCACCAGCACAGCTAAGGATATATACTTGAGGCGCCGGTaGGCCGCTGTAGTGGACCCAGGTTCCAACGCGCCCGAGGACACA +
Preference number: 5 (lower is better)
Translates to: FWTTSTAKDIYLRRR*AAVVDPGSNAPEDT
Trigger: TGTGTCCTCGGGCGCGTTGGAACCTGGGTCCACTACAGCGGCTCACCGGCGCCTCAAGTATATATCCTTAGCTGTGCTGGTGGTCCAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208640.2
CDS TCA 90 bp GGCGACACCAGTGAAGAGCAGCAGCAGAGAGGCCCACTGCAGGCGTaGGAGGCTGCGATTCAACATGAGCACAGAGAAGAGCGCTGTAGT +
Preference number: 5 (lower is better)
Translates to: GDTSEEQQQRGPLQA*EAAIQHEHREERCS
Trigger: ACTACAGCGCTCTTCTCTGTGCTCATGTTGAATCGCAGCCTCTCACGCCTGCAGTGGGCCTCTCTGCTGCTGCTCTTCACTGGTGTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS-3UTR CAA 90 bp GTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCACATTACCCCTCTTTaGTGCGAAGAGCAGCAGGAG +
Preference number: 5 (lower is better)
Translates to: VGQGLVRTGSSRVYLTLPHITPL*CEEQQE
Trigger: CTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATGTG...GGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp TTTAGTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: FSPSWARARRENEDRPASAEAMA*TAPRGR
Trigger: CCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGC...AGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGACTAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS GCA 90 bp TGGACAATGGCGACACCAGTGAAGAGCAGCAGCAGAGAGGCCCACTaGAGGCGTGAGAGGCTGCGATTCAACATGAGCACAGAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: WTMATPVKSSSREAH*RRERLRFNMSTEKS
Trigger: GCTCTTCTCTGTGCTCATGTTGAATCGCAGCCTCTCACGCCTGCAGTGGGCCTCTCTGCTGCTGCTCTTCACTGGTGTCGCCATTGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS GCA 90 bp TCCACATATTGGACCAGGACAGCCTCATGGAGGAAGAGGACCAGGTaGTTCACATTACCCGCTGTAGTGGACCCAGGTTCCAACGCGCCC +
Preference number: 5 (lower is better)
Translates to: STYWTRTASWRKRTR*FTLPAVVDPGSNAP
Trigger: GGGCGCGTTGGAACCTGGGTCCACTACAGCGGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208397.2
CDS CCA 90 bp GCACCAATGACGAGCCCAGCGCCCAGGGCAAATAATGGGTCCAGGTaGAAGCCAAAGAGGCGAATGGAGGCAACAGTGGACAGCACAATA +
Preference number: 5 (lower is better)
Translates to: APMTSPAPRANNGSR*KPKRRMEATVDSTI
Trigger: TATTGTGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCTTCCACCTGGACCCATTATTTGCCCTGGGCGCTGGGCTCGTCATTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS-3UTR CAA 90 bp CTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTGAGTGTGTCCACATATaGGACCAGGACAGCCTCATG +
Preference number: 5 (lower is better)
Translates to: LCGAGVGKDREFPCLPHPECVHI*DQDSLM
Trigger: CATGAGGCTGTCCTGGTCCAATATGTGGACACACTC...AGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp ATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGTGTCTAGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: MSALCGAGVGKDREFPCLEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...TAGACACGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp TTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCCCGGAGTGTGTCCACATATaGGACCAGGACAGCCTCATG +
Preference number: 5 (lower is better)
Translates to: LVMSALCGAGVGKDREFPECVHI*DQDSLM
Trigger: CATGAGGCTGTCCTGGTCCAATATGTGGACACACTC...CGGGAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp AGGTTAGTCATGTCAGCCCTATGTGGGGCAGGGGTTGGTAAGGACAGGGAGTTCGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: RLVMSALCGAGVGKDREFEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...GAACTCCCTGTCCTTACCAACCCCTGCCCCACATAGGGCTGACATGACTAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp CACGAGGAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: HEESLVVIGELQGFYPVCAEAMA*TAPRGR
Trigger: CCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGC...GCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTCCTCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS CCA 90 bp ACCGCAAGCTTGAGTGTGTCCACATATTGGACCAGGACAGCCTCATaGAGGAAGAGGACCAGGTGCTTCACATTACCCGCTGTAGTGGAC +
Preference number: 5 (lower is better)
Translates to: TASLSVSTYWTRTAS*RKRTRCFTLPAVVD
Trigger: GTCCACTACAGCGGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp AGCAGAGACCACGCTGTTGTCATGATCCAGGGTGATGGTGCAGGAGAGAAGACCCACATTACCCCTCTTTaGTGCGAAGAGCAGCAGGAG +
Preference number: 5 (lower is better)
Translates to: SRDHAVVMIQGDGAGEKTHITPL*CEEQQE
Trigger: CTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATGTG...GGTCTTCTCTCCTGCACCATCACCCTGGATCATGACAACAGCGTGGTCTCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp GTGAGCAACAACAGGCTGATTGCTCTTCAAGGGTCTCTGTACCGGGGAAACTGCGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: VSNNRLIALQGSLYRGNCEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...GCAGTTTCCCCGGTACAGAGACCCTTGAAGAGCAATCAGCCTGTTGTTGCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp CCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCCACTCCCACCAGCTaGCTGTGCCTGGACAATGGC +
Preference number: 5 (lower is better)
Translates to: PSRIMGENKPPTHKSQALATPTS*LCLDNG
Trigger: GCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGGC...CAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS CCA 90 bp ACCGCAAGCTTGAGTGTGTCCACATATTGGACCAGGACAGCCTCATaGAGGAAGAGGACCAGGTGCTTCACATTACCCCTCTTTTGTGCG +
Preference number: 5 (lower is better)
Translates to: TASLSVSTYWTRTAS*RKRTRCFTLPLFCA
Trigger: CGCACAAAAGAGGGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000208633.2
CDS-3UTR CAA 90 bp GATAAGAGTTTAGTCCCAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCACATTACCCCTCTTTaGTGCGAAGAGCAGCAGGAG +
Preference number: 5 (lower is better)
Translates to: DKSLVPVGPGQEGRTKTGHITPL*CEEQQE
Trigger: CTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATGTG...GCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTGGGACTAAACTCTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGAGAGTGTGTCCACATATaGGACCAGGACAGCCTCATG +
Preference number: 5 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGECVHI*DQDSLM
Trigger: CATGAGGCTGTCCTGGTCCAATATGTGGACACACTC...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp GCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCAGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: AETHLRNTVKIAGVEVGPAEAMA*TAPRGR
Trigger: CCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGC...TGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp ATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAGGCCCTGGCAACAACTGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGG +
Preference number: 5 (lower is better)
Translates to: IMGENKPPTHKSQALATTAEAMA*TAPRGR
Trigger: CCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGC...AGTTGTTGCCAGGGCCTGGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp GAGCACAGAGAAGAGCGCTGTAGTCAGGATCTTCAGCTGATATGTCACCTGGAAAGGACAGCCCCTCTTTaGTGCGAAGAGCAGCAGGAG +
Preference number: 5 (lower is better)
Translates to: EHREERCSQDLQLICHLERTAPL*CEEQQE
Trigger: CTCCTGCTGCTCTTCGCACAAAAGAGGGGCTGTCCT...TTCCAGGTGACATATCAGCTGAAGATCCTGACTACAGCGCTCTTCTCTGTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208640.2
CDS-3UTR CAA 90 bp GTTGGTAAGGACAGGGAGTTCCCGTGTCTACCTCACCCTACCCCTAATACTGATGAGTGTGTCCACATATaGGACCAGGACAGCCTCATG +
Preference number: 5 (lower is better)
Translates to: VGKDREFPCLPHPTPNTDECVHI*DQDSLM
Trigger: CATGAGGCTGTCCTGGTCCAATATGTGGACACACTC...ATCAGTATTAGGGGTAGGGTGAGGTAGACACGGGAACTCCCTGTCCTTACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp GAGGAAGCAGCTCTAAAAAGCTCCTCCAGGAGAGGAGAGTCCATCTATCAGGAAGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: EEAALKSSSRRGESIYQEEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...TTCCTGATAGATGGACTCTCCTCTCCTGGAGGAGCTTTTTAGAGCTGCTTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp CAGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCATGTTGTCAGCATACTaGACAACAACAGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: QLGQGKKGERRQASIFKSMLSAY*TTTATR
Trigger: TCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACAT...GGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS CCA 90 bp ACCGCAAGCTTGAGTGTGTCCACATATTGGACCAGGACAGCCTCATaGAGGAAGAGGACCAGGTGCTTCACATTACCTTTGAGCACTTCA +
Preference number: 5 (lower is better)
Translates to: TASLSVSTYWTRTAS*RKRTRCFTLPLSTS
Trigger: TGAAGTGCTCAAAGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207114.2
CDS-3UTR CAA 90 bp CACGAGGAGTCATTAGTCGTTATTGGAGAGCTGCAGGGCTTTTATCCAGTCTGCCACATTACCCCTCTTTaGTGCGAAGAGCAGCAGGAG +
Preference number: 5 (lower is better)
Translates to: HEESLVVIGELQGFYPVCHITPL*CEEQQE
Trigger: CTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATGTG...GCAGACTGGATAAAAGCCCTGCAGCTCTCCAATAACGACTAATGACTCCTCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp CACAGAGAAGAGCGCTGTAGTCAGGATCTTCAGCTGATATGTCACCTGGAAAGTGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: HREERCSQDLQLICHLESEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...ACTTTCCAGGTGACATATCAGCTGAAGATCCTGACTACAGCGCTCTTCTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208640.2
CDS-3UTR CAA 90 bp TGGAGCTGCAGGCGGATCGGCAGCTTTAGTTTTTGTCTGGATGTTTCTGAAGAGCCTGGCAACAACTTTTaGGACCTGCAGAAGCCCAAC +
Preference number: 5 (lower is better)
Translates to: WSCRRIGSFSFCLDVSEEPGNNF*DLQKPN
Trigger: GTTGGGCTTCTGCAGGTCCAAAAAGTTGTTGCCAGG...CTCTTCAGAAACATCCAGACAAAAACTAAAGCTGCCGATCCGCCTGCAGCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096514.11
CDS-3UTR CAA 90 bp TTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCGCCACTCCCACCAGCTaGCTGTGCCTGGACAATGGC +
Preference number: 5 (lower is better)
Translates to: FAETHLRNTVKIAGVEVGATPTS*LCLDNG
Trigger: GCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGGC...GCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp AGTTGGGCCAGGGCAAGAAGGGAGAACGAAGACAGGCCAGCATCTTCAAGTCCAAAGCCCTTGAGGATGTaGTCAGCATACTTGACAACA +
Preference number: 5 (lower is better)
Translates to: SWARARRENEDRPASSSPKPLRM*SAYLTT
Trigger: TGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTT...TGGACTTGAAGATGCTGGCCTGTCTTCGTTCTCCCTTCTTGCCCTGGCCCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS CCA 90 bp TCAGCATACTTGACAACAACAGCCACCAGAAGCCCACCAAAGGCTTaGTTTAGTACTACACCCCAGACAGCAGGTGTGTACCCAAAGAAG +
Preference number: 5 (lower is better)
Translates to: SAYLTTTATRSPPKA*FSTTPQTAGVYPKK
Trigger: CTTCTTTGGGTACACACCTGCTGTCTGGGGTGTAGTACTAAACCAAGCCTTTGGTGGGCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS-3UTR CAA 90 bp TGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: CRNSPKKYCKDSRSRGGPEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...GGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp TGGAATAGCAGTACCCCAACCCTGTTCCCAAAGAGGTTAGCCCAAGGCAGAGGAATGTTGTCAGCATACTaGACAACAACAGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: WNSSTPTLFPKRLAQGRGMLSAY*TTTATR
Trigger: TCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACAT...TCCTCTGCCTTGGGCTAACCTCTTTGGGAACAGGGTTGGGGTACTGCTATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp TGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCCACATTACCCCTCTTTaGTGCGAAGAGCAGCAGGAG +
Preference number: 5 (lower is better)
Translates to: CRNSPKKYCKDSRSRGGPHITPL*CEEQQE
Trigger: CTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATGTG...GGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp AGCAGCTACGACCCCTTCACCTTGGTGAGCAACAACAGGCTGATTGCTCTTCAAAAGCCCTTGAGGATGTaGTCAGCATACTTGACAACA +
Preference number: 5 (lower is better)
Translates to: SSYDPFTLVSNNRLIALQKPLRM*SAYLTT
Trigger: TGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTT...TTGAAGAGCAATCAGCCTGTTGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp AACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: NSPKKYCKDSRSRGGPINEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...GTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp TTCCATATCCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCGAGGGCACCGCAAGCTaGAGTGTGTCCACATATTGG +
Preference number: 5 (lower is better)
Translates to: FHIPLELWEKINLQPTKAEGTAS*SVSTYW
Trigger: CCAATATGTGGACACACTCAAGCTTGCGGTGCCCTC...GGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGGATATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp AGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTTACGACCCCTTCACCTaGGTGAGCAACCTGGAAAGT +
Preference number: 5 (lower is better)
Translates to: RNSPKKYCKDSRSRGGPIYDPFT*VSNLES
Trigger: ACTTTCCAGGTTGCTCACCAAGGTGAAGGGGTCGTA...AATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123277.8
CDS-3UTR CAA 90 bp CGAACACACACACACACACACATCTGGGATACAGTTAAGGAGTTAATAAGCTTTGAGTGTGTCCACATATaGGACCAGGACAGCCTCATG +
Preference number: 5 (lower is better)
Translates to: RTHTHTHIWDTVKELISFECVHI*DQDSLM
Trigger: CATGAGGCTGTCCTGGTCCAATATGTGGACACACTC...AAAGCTTATTAACTCCTTAACTGTATCCCAGATGTGTGTGTGTGTGTGTGTTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
CDS-3UTR CAA 90 bp ATTTGCAGAAACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGGAGTGTGTCCACATATaGGACCAGGACAGCCTCATG +
Preference number: 5 (lower is better)
Translates to: ICRNSPKKYCKDSRSRGGECVHI*DQDSLM
Trigger: CATGAGGCTGTCCTGGTCCAATATGTGGACACACTC...CCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGTTTCTGCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp CACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAGAGATGTTGTCAGCATACTaGACAACAACAGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: HLRNTVKIAGVEVGPLTEMLSAY*TTTATR
Trigger: TCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACAT...CTCTGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp ACTCACCTAAGAAATACTGTAAAGATAGCAGGAGTAGAGGTGGGCCCATTAACAATGTTGTCAGCATACTaGACAACAACAGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: THLRNTVKIAGVEVGPLTMLSAY*TTTATR
Trigger: TCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACAT...TGTTAATGGGCCCACCTCTACTCCTGCTATCTTTACAGTATTTCTTAGGTGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
CDS-3UTR CAA 90 bp TTCCATATCCCTCTAGAATTATGGGAGAAAATAAACCTCCAACCCACAAAAGCCAAGCCCTTGAGGATGTaGTCAGCATACTTGACAACA +
Preference number: 5 (lower is better)
Translates to: FHIPLELWEKINLQPTKAKPLRM*SAYLTT
Trigger: TGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTT...GGCTTTTGTGGGTTGGAGGTTTATTTTCTCCCATAATTCTAGAGGGATATGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115660.12
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS-3UTR CAA 90 bp ATCATTGATCTAATGATAGCACAAACAAATCTCCATCCCAAACTATTGGAAAGCAAGCCCTTGAGGATGTaGTCAGCATACTTGACAACA +
Preference number: 5 (lower is better)
Translates to: IIDLMIAQTNLHPKLLESKPLRM*SAYLTT
Trigger: TGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTT...GCTTTCCAATAGTTTGGGATGGAGATTTGTTTGTGCTATCATTAGATCAATGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115660.12
CDS TCA 72 bp GAGGCCACAACTGCCGCTAAGCCCGCCCCCGGGTTCTaGTCCAGTGGCCGTGGGCCACTCCCACCAGCTTGC +
Preference number: 6 (lower is better)
Translates to: EATTAAKPAPGF*SSGRGPLPPAC
Trigger: GCAAGCTGGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGGCTTAGCGGCAGTTGTGGCCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS GCA 72 bp GGGCCCAGAGGCCGAGGCCGAGGCTATGGCTTTGACTaGACCTCGGGGAAGGCTGTAGAGGTAGACAGCACC +
Preference number: 6 (lower is better)
Translates to: GPRGRGRGYGFD*TSGKAVEVDST
Trigger: GGTGCTGTCTACCTCTACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGCCTCGGCCTCTGGGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS CAA 72 bp ATGCAGGGCCCAGAGGCCGAGGCCGAGGCTATGGCTTaGACTGCACCTCGGGGAAGGCTGGAAAGTGGCAGC +
Preference number: 6 (lower is better)
Translates to: MQGPEAEAEAMA*TAPRGRLESGS
Trigger: GCTGCCACTTTCCAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGCCTCGGCCTCTGGGCCCTGCAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000153620.3
CDS TCA 72 bp CCCCAGACAGCAGGTGTGTACCCAAAGAAGAAGCCTTaGCTGGCCACGGCGGTGCCCTCAGCCCACCAGAGC +
Preference number: 6 (lower is better)
Translates to: PQTAGVYPKKKP*LATAVPSAHQS
Trigger: GCTCTGGTGGGCTGAGGGCACCGCCGTGGCCAGTCAAGGCTTCTTCTTTGGGTACACACCTGCTGTCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
CDS TCA 72 bp TGCAGGGCCCAGAGGCCGAGGCCGAGGCTATGGCTTTaGCTGCACCTCGGGGAAGGCTGTAGAGGTAGACAG +
Preference number: 6 (lower is better)
Translates to: CRAQRPRPRLWL*LHLGEGCRGRQ
Trigger: CTGTCTACCTCTACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCGGCCTCGGCCTCTGGGCCCTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS GCA 72 bp ATCCAGTGGCCGTGGGCCACTCCCACCAGCTTGCTGTaGCTGGACAATGGCGACACCAGTGAAGAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: IQWPWATPTSLL*LDNGDTSEEQQ
Trigger: CTGCTGCTCTTCACTGGTGTCGCCATTGTCCAGGCACAGCAAGCTGGTGGGAGTGGCCCACGGCCACTGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS TCA 72 bp ACCAGCACAGCTAAGGATATATACTTGAGGCGCCGGTaGGCCGCTGTAGTGGACCCAGGTTCCAACGCGCCC +
Preference number: 6 (lower is better)
Translates to: TSTAKDIYLRRR*AAVVDPGSNAP
Trigger: GGGCGCGTTGGAACCTGGGTCCACTACAGCGGCTCACCGGCGCCTCAAGTATATATCCTTAGCTGTGCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208640.2
CDS TCA 72 bp CACCTCGGGGAAGGCTGTAGAGGTAGACAGCACCAATaGCGAGCCCAGCGCCCAGGGCAAATAATGGGTCCA +
Preference number: 6 (lower is better)
Translates to: HLGEGCRGRQHQ*RAQRPGQIMGP
Trigger: TGGACCCATTATTTGCCCTGGGCGCTGGGCTCGTCATTGGTGCTGTCTACCTCTACAGCCTTCCCCGAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS CCA 72 bp ACGAGCCCAGCGCCCAGGGCAAATAATGGGTCCAGGTaGAAGCCAAAGAGGCGAATGGAGGCAACAGTGGAC +
Preference number: 6 (lower is better)
Translates to: TSPAPRANNGSR*KPKRRMEATVD
Trigger: GTCCACTGTTGCCTCCATTCGCCTCTTTGGCTTCCACCTGGACCCATTATTTGCCCTGGGCGCTGGGCTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS GCA 72 bp TGGACCAGGACAGCCTCATGGAGGAAGAGGACCAGGTaGTTCACATTACCCGCTGTAGTGGACCCAGGTTCC +
Preference number: 6 (lower is better)
Translates to: WTRTASWRKRTR*FTLPAVVDPGS
Trigger: GGAACCTGGGTCCACTACAGCGGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208397.2
CDS CAA 90 bp AGACAGGCCAGCATCTTCAAGTCCAGCAGCTACGACCCCTTCACCTaGGTGAGCAACTTTGGCAGAAAGGGCTCCGTGGTGAGGTCTCCT +
Preference number: 6 (lower is better)
Translates to: RQASIFKSSSYDPFT*VSNFGRKGSVVRSP
Trigger: AGGAGACCTCACCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCTGGACTTGAAGATGCTGGCCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153620.3
CDS CAA 90 bp CAGCCCCTCTTTTGTGCGAAGAGCAGCAGGAGACAGGTGAGACCTTaGAGCACTTCAGCCATGACCACAGCAGTGGTGGCAAAGAAGCGG +
Preference number: 6 (lower is better)
Translates to: QPLFCAKSSRRQVRP*STSAMTTAVVAKKR
Trigger: CCGCTTCTTTGCCACCACTGCTGTGGTCATGGCTGAAGTGCTCAAAGGTCTCACCTGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208640.2
CDS CCA 72 bp AGAGAGGGCACCGCAAGCTTGAGTGTGTCCACATATTaGACCAGGACAGCCTCATGGAGGAAGAGGACCAGG +
Preference number: 6 (lower is better)
Translates to: REGTASLSVSTY*TRTASWRKRTR
Trigger: CCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGTGCCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS CAA 72 bp GAGAGAGGGCACCGCAAGCTTGAGTGTGTCCACATATaGGACCAGGACAGCCTCATGGAGGAAGAGGACCAG +
Preference number: 6 (lower is better)
Translates to: ERGHRKLECVHI*DQDSLMEEEDQ
Trigger: CTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGTGCCCTCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS TCA 72 bp GTTCATTACAGTTCTTTGGCAGAAAGGGCTCCGTGGTaGGGTCTCCTCGAGAAGACAGCTGCGGTGGTGGTG +
Preference number: 6 (lower is better)
Translates to: VHYSSLAERAPW*GLLEKTAAVVV
Trigger: CACCACCACCGCAGCTGTCTTCTCGAGGAGACCTCACCACGGAGCCCTTTCTGCCAAAGAACTGTAATGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208718.2
CDS CAA 72 bp AGCATCTTCAAGTCCAGCAGCTACGACCCCTTCACCTaGGTGAGCAACTTTGGCAGAAAGGGCTCCGTGGTG +
Preference number: 6 (lower is better)
Translates to: SIFKSSSYDPFT*VSNFGRKGSVV
Trigger: CACCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAAGGTGAAGGGGTCGTAGCTGCTGGACTTGAAGATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153620.3
CDS CAA 72 bp GAGAGAGGGCACCGCAAGCTTGAGTGTGTCCACATATaGGACCAGGACAGCCCCTCTTTTGTGCGAAGAGCA +
Preference number: 6 (lower is better)
Translates to: ERGHRKLECVHI*DQDSPSFVRRA
Trigger: TGCTCTTCGCACAAAAGAGGGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGTGCCCTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208640.2
CDS CAA 90 bp TTACCCCTCTTTTGTGCGAAGAGCAGCAGGAGACAGGTGAGACCTTaGAGCACTTCAGCCATGACCACAGCAGTGGTGGCAAAGAAGCGG +
Preference number: 6 (lower is better)
Translates to: LPLFCAKSSRRQVRP*STSAMTTAVVAKKR
Trigger: CCGCTTCTTTGCCACCACTGCTGTGGTCATGGCTGAAGTGCTCAAAGGTCTCACCTGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
CDS CAA 90 bp GGTATAGATGAGAGAGGGCACCGCAAGCTTGAGTGTGTCCACATATaGGACCAGGACAGCCTCATGGAGGAAGAGGACCAGGTGCTTCAC +
Preference number: 6 (lower is better)
Translates to: GIDERGHRKLECVHI*DQDSLMEEEDQVLH
Trigger: GTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGTGCCCTCTCTCATCTATACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2
CDS GCA 72 bp TGGACCAGGACAGCCTCATGGAGGAAGAGGACCAGGTaGTTCACATTACCTTTGAGCACTTCAGCCATGACC +
Preference number: 6 (lower is better)
Translates to: WTRTASWRKRTR*FTLPLSTSAMT
Trigger: GGTCATGGCTGAAGTGCTCAAAGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207114.2
CDS TCA 72 bp TCGGGGAAGGCTGGAAAGTGGCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGTTATTCTGCAAGGTAT +
Preference number: 6 (lower is better)
Translates to: SGKAGKWQLAGC*WQHTGGYSARY
Trigger: ATACCTTGCAGAATAACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAGCCTTCCCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096514.11
ENSMUST00000153620.3
CDS CCA 72 bp TTGAGTGTGTCCACATATTGGACCAGGACAGCCTCATaGAGGAAGAGGACCAGGTGCTTCACATTACCCCTC +
Preference number: 6 (lower is better)
Translates to: LSVSTYWTRTAS*RKRTRCFTLPL
Trigger: GAGGGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000096514.11
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000123277.8
ENSMUST00000153620.3
ENSMUST00000155967.3
ENSMUST00000208633.2
CDS CCA 72 bp TTGAGTGTGTCCACATATTGGACCAGGACAGCCTCATaGAGGAAGAGGACCAGGTGCTTCACATTACCCGCT +
Preference number: 6 (lower is better)
Translates to: LSVSTYWTRTAS*RKRTRCFTLPA
Trigger: AGCGGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208397.2
CDS CAA 90 bp GTGGACAGCACAATAGACAGGGAGGTGGCAAAGCCCTTGAGGATGTaGTCAGCATACTTGACAACAACAGCCACCAGAAGCCCACCAAAG +
Preference number: 6 (lower is better)
Translates to: VDSTIDREVAKPLRM*SAYLTTTATRSPPK
Trigger: CTTTGGTGGGCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTTTGCCACCTCCCTGTCTATTGTGCTGTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS CAA 90 bp GAGGCAACAGTGGACAGCACAATAGACAGGGAGGTGGCAAAGCCCTaGAGGATGTTGTCAGCATACTTGACAACAACAGCCACCAGAAGC +
Preference number: 6 (lower is better)
Translates to: EATVDSTIDREVAKP*RMLSAYLTTTATRS
Trigger: GCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTTTGCCACCTCCCTGTCTATTGTGCTGTCCACTGTTGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS TCA 72 bp GGTGAGCAACCTGGAAAGTGGCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGTTATTCTGCAAGGTAT +
Preference number: 6 (lower is better)
Translates to: GEQPGKWQLAGC*WQHTGGYSARY
Trigger: ATACCTTGCAGAATAACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAGGTTGCTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123277.8
CDS CCA 72 bp TTGACAACAACAGCCACCAGAAGCCCACCAAAGGCTTaGTTTAGTACTACACCCCAGACAGCAGGTGTGTAC +
Preference number: 6 (lower is better)
Translates to: LTTTATRSPPKA*FSTTPQTAGVY
Trigger: GTACACACCTGCTGTCTGGGGTGTAGTACTAAACCAAGCCTTTGGTGGGCTTCTGGTGGCTGTTGTTGTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS CAA 90 bp ATAGACAGGGAGGTGGCAAAGCCCTTGAGGATGTTGTCAGCATACTaGACAACAACAGCCACCAGAAGCCCACCAAAGGCTTGGTTTAGT +
Preference number: 6 (lower is better)
Translates to: IDREVAKPLRMLSAY*TTTATRSPPKAWFS
Trigger: ACTAAACCAAGCCTTTGGTGGGCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTTTGCCACCTCCCTGTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS CCA 72 bp TTGAGTGTGTCCACATATTGGACCAGGACAGCCTCATaGAGGAAGAGGACCAGGTGCTTCACATTACCTTTG +
Preference number: 6 (lower is better)
Translates to: LSVSTYWTRTAS*RKRTRCFTLPL
Trigger: CAAAGGTAATGTGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207114.2
CDS CAA 72 bp ACAATAGACAGGGAGGTGGCAAAGCCCTTGAGGATGTaGTCAGCATACTTGACAACAACAGCCACCAGAAGC +
Preference number: 6 (lower is better)
Translates to: TIDREVAKPLRM*SAYLTTTATRS
Trigger: GCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTTTGCCACCTCCCTGTCTATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000208397.2
ENSMUST00000208718.2
CDS TCA 72 bp GATATGTCACCTGGAAAGTGGCAGCTGGCAGGTTGCTaGTGGCAACATACTGGAGGTTATTCTGCAAGGTAT +
Preference number: 6 (lower is better)
Translates to: DMSPGKWQLAGC*WQHTGGYSARY
Trigger: ATACCTTGCAGAATAACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTGCCACTTTCCAGGTGACATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115660.12
ENSMUST00000115663.10
ENSMUST00000155967.3
ENSMUST00000207114.2
ENSMUST00000208397.2
ENSMUST00000208633.2