Pregenerated sensors for SLC28A2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079071Ensembl transcript IDs: ENSMUST00000110521.3
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CCCCTGCAAGAGGACATGTCATGTTTGGGCCAGGCTTaGCTTGAATCTGAGGTAATCCCCTTAGCTGTGAGC | + |
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Preference number: 3 (lower is better) Translates to: PLQEDMSCLGQA*LESEVIPLAVS Trigger: GCTCACAGCTAAGGGGATTACCTCAGATTCAAGGCAAGCCTGGCCCAAACATGACATGTCCTCTTGCAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | TCTCCCCTCACCTCCACCCCTGCAAGAGGACATGTCATGTTTGGGCCAGGCTTGAGCTGCTCTGGCCTTTaGGCTGTGTCGAGAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: SPLTSTPARGHVMFGPGLSCSGL*AVSRTS Trigger: GCTGGTTCTCGACACAGCTCAAAGGCCAGAGCAGCT...CAAGCCTGGCCCAAACATGACATGTCCTCTTGCAGGGGTGGAGGTGAGGGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | TCTCCCCTCACCTCCACCCCTGCAAGAGGACATGTCATGTTTGGGCCAGGCTTGCCAAAATCCCAAAGATaGACTGAAGGCCCAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: SPLTSTPARGHVMFGPGLPKSQR*TEGPGP Trigger: GGGGCCTGGGCCTTCAGTTCATCTTTGGGATTTTGG...CAAGCCTGGCCCAAACATGACATGTCCTCTTGCAGGGGTGGAGGTGAGGGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CCCTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAAGCCATCCTCCAGGCTaGGTCCCTGTGTCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PLAVSLQVRDHGVCHHSQSHPPG*VPVSLP Trigger: AGGAAGTGACACAGGGACTCAGCCTGGAGGATGGCT...TTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | TCTCCCCTCACCTCCACCCCTGCAAGAGGACATGTCATGTTTGGGCCAGGCTTGCTGGACACGTTGTCTTaGCAGGGGCCTGAGAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: SPLTSTPARGHVMFGPGLLDTLS*QGPEKE Trigger: TTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAG...CAAGCCTGGCCCAAACATGACATGTCCTCTTGCAGGGGTGGAGGTGAGGGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | TCTCCCCTCACCTCCACCCCTGCAAGAGGACATGTCATGTTTGGGCCAGGCTTGAGATGTTTCCTGCCATaGCCAGGGTTTCTGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SPLTSTPARGHVMFGPGLRCFLP*PGFLEQ Trigger: CTGCTCCAGAAACCCTGGCCATGGCAGGAAACATCT...CAAGCCTGGCCCAAACATGACATGTCCTCTTGCAGGGGTGGAGGTGAGGGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| 3UTR CAA 72 bp | CCCTCACCTCCACCCCTGCAAGAGGACATGTCATGTTaGGGCCAGGCTTGCCTTGAATCTGAGGTAATCCCC | + |
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Preference number: 4 (lower is better) Translates to: PSPPPLQEDMSC*GQACLESEVIP Trigger: GGGGATTACCTCAGATTCAAGGCAAGCCTGGCCCAAACATGACATGTCCTCTTGCAGGGGTGGAGGTGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | CCCTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAACATGGCCAGGGTTTCTaGAGCAGTGGTGCCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: PLAVSLQVRDHGVCHHSQHGQGF*SSGAHL Trigger: AAGATGGGCACCACTGCTCCAGAAACCCTGGCCATG...TTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CCCTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAACAAGGTAGGGACGGATaGGCAGAGGTACTTCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: PLAVSLQVRDHGVCHHSQQGRDG*AEVLLS Trigger: TGACAGAAGTACCTCTGCTCATCCGTCCCTACCTTG...TTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTGTCTTGCCAGGGGCCTaGGAAAGAAGGCATGTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSVLPGA*ERRHVG Trigger: ACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGAC...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CCCTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAACAAAGCCTCCAGTCATaGCTGCATGGATTTCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: PLAVSLQVRDHGVCHHSQQSLQS*LHGFQR Trigger: TCTCTGAAATCCATGCAGTCATGACTGGAGGCTTTG...TTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTACTGTACAGCCATCATaGAAGCCATGGGCCTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSTVQPS*KPWALG Trigger: TCCTAAGGCCCATGGCTTTCATGATGGCTGTACAGT...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | CCCTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGCTGAAAAATCCTCCTaGTCCAGAGAGAGGAATGAC | + |
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Preference number: 4 (lower is better) Translates to: PLAVSLQVRDHGVCHHSQAEKSS*SRERND Trigger: GTCATTCCTCTCTCTGGAGCAGGAGGATTTTTCAGC...TTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTTCCCAACATTGTGCCTaGTATGGTAGCAAAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSSQHCA*YGSKAS Trigger: GGAGGCTTTGCTACCATAGCAGGCACAATGTTGGGA...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTGGCTTATGGCTTCTGTaGCTCCATTGCTTGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSGLWLL*LHCLQL Trigger: AAGCTGCAAGCAATGGAGCCACAGAAGCCATAAGCC...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTCTTCTGTGGCTCCATTaGTTGCAGCTTCCAGGATAT | + |
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Preference number: 4 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSLLWLH*LQLPGY Trigger: ATATCCTGGAAGCTGCAAGCAATGGAGCCACAGAAG...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CAGGCTTGCCTTGAATCTGAGGTAATCCCCTTAGCTGTGAGCCTACAGGTAAGAAACTTCTCGCCTTCGTaGAAGGCTGAAAAATCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QACLESEVIPLAVSLQVRNFSPS*KAEKSS Trigger: GGAGGATTTTTCAGCCTTTCACGAAGGCGAGAAGTT...TCTTACCTGTAGGCTCACAGCTAAGGGGATTACCTCAGATTCAAGGCAAGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | TGCCTTGAATCTGAGGTAATCCCCTTAGCTGTGAGCCTACAGGTAAGAGACCACACTGTTTCTCGCCATTaGTCCACTCTTCTACTCCAG | + |
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Preference number: 4 (lower is better) Translates to: CLESEVIPLAVSLQVRDHTVSRH*STLLLQ Trigger: CTGGAGTAGAAGAGTGGATCAATGGCGAGAAACAGT...GTGGTCTCTTACCTGTAGGCTCACAGCTAAGGGGATTACCTCAGATTCAAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTAAGTCACTCTTCCTCTaGGTTATCATGGATGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSKSLFL*VIMDVK Trigger: CTTGACATCCATGATAACCCAGAGGAAGAGTGACTT...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACCTCCAGAGAGAGGAATaGCCCAAGCCATCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYLQREE*PKPSSR Trigger: CCTGGAGGATGGCTTGGGTCATTCCTCTCTCTGGAG...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | TGCCTTGAATCTGAGGTAATCCCCTTAGCTGTGAGCCTACAGGTAAGAGACCACGTGCCCATCTTGCTTTaGAGAAACAAGGCAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: CLESEVIPLAVSLQVRDHVPILL*RNKAIF Trigger: GAAGATTGCCTTGTTTCTTCAAAGCAAGATGGGCAC...GTGGTCTCTTACCTGTAGGCTCACAGCTAAGGGGATTACCTCAGATTCAAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACGGAGATCAGCTGCTCTaGCCTTTGAGCTGTGTCGAG | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYGDQLL*PLSCVE Trigger: CTCGACACAGCTCAAAGGCCAGAGCAGCTGATCTCC...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | TTTGCCACCATTCCCAAGTTAAAACTAAGCATCTACTTTGATTTCCCCACTCTCCATGAGCTCGAGACCTaGGTTCTCCATGCCATTCTC | + |
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Preference number: 4 (lower is better) Translates to: FATIPKLKLSIYFDFPTLHELET*VLHAIL Trigger: GAGAATGGCATGGAGAACCCAGGTCTCGAGCTCATG...GAGAGTGGGGAAATCAAAGTAGATGCTTAGTTTTAACTTGGGAATGGTGGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | TTTGCCACCATTCCCAAGTTAAAACTAAGCATCTACTTTGATTTCCCCACTCTCCAGCATACCGCACTGTaGTGTTTGGAGCAGGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: FATIPKLKLSIYFDFPTLQHTAL*CLEQAK Trigger: CTTTGCCTGCTCCAAACACCACAGTGCGGTATGCTG...GAGAGTGGGGAAATCAAAGTAGATGCTTAGTTTTAACTTGGGAATGGTGGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | ACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACATGAAAATGTATGACCTGGGTTCTCCATaGCATTCTCCACTCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: TLWSLVGFSENRKYMKMYDLGSP*HSPLWP Trigger: AGGCCAGAGTGGAGAATGGCATGGAGAACCCAGGTC...ATACATTTTCATGTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACCACAAAGATGTTTCCTaGCATGGCCAGGGTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYHKDVS*HGQGFW Trigger: CCAGAAACCCTGGCCATGGCAGGAAACATCTTTGTG...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | TTTGCCACCATTCCCAAGTTAAAACTAAGCATCTACTTTGATTTCCCCACTCTCTTCTCCACTCTGGCCTaGGAAACAGACTTTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: FATIPKLKLSIYFDFPTLFSTLA*ETDFLP Trigger: GGGAAGAAAGTCTGTTTCCCAGGCCAGAGTGGAGAA...GAGAGTGGGGAAATCAAAGTAGATGCTTAGTTTTAACTTGGGAATGGTGGCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | TTTGCCACCATTCCCAAGTTAAAACTAAGCATCTACTTTGATTTCCCCACTCTCTGCCATTCTCCACTCTaGCCTGGGAAACAGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: FATIPKLKLSIYFDFPTLCHSPL*PGKQTF Trigger: GAAAGTCTGTTTCCCAGGCCAGAGTGGAGAATGGCA...GAGAGTGGGGAAATCAAAGTAGATGCTTAGTTTTAACTTGGGAATGGTGGCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACGGCAGAAATCAAGGATaGTGCATCAATCCCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYGRNQG*CINPKG Trigger: TCCTTTGGGATTGATGCATCATCCTTGATTTCTGCC...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACTTTCTGGAGCAGTGGTaGCCATCTTGCTTTGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYFLEQW*PSCFEE Trigger: TTCTTCAAAGCAAGATGGGCACCACTGCTCCAGAAA...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | AATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACATGAAAAACAAGGCAATCTTCTaGATCACCCACTGCACAAGG | + |
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Preference number: 4 (lower is better) Translates to: NFTLWSLVGFSENRKYMKNKAIF*ITHCTR Trigger: CCTTGTGCAGTGGGTGATTCAGAAGATTGCCTTGTT...TTTCATGTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACGGACTCTTTGACTTCTaGATATACCAGTTTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYGLFDF*IYQFGQ Trigger: CTGTCCAAACTGGTATATCCAGAAGTCAAAGAGTCC...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACCAAGCAGGATCTTTCTaGATAAACCAGCATGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LRNFTLWSLVGFSENRKYQAGSF*INQHVF Trigger: AAAGACATGCTGGTTTATTCAGAAAGATCCTGCTTG...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR TCA 90 bp | TTTGCCACCATTCCCAAGTTAAAACTAAGCATCTACTTTGATTTCCCCACTCTCCATAGGTCCTATTGGTaGAATTTGTGTTTAGGAATG | + |
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Preference number: 4 (lower is better) Translates to: FATIPKLKLSIYFDFPTLHRSYW*NLCLGM Trigger: CATTCCTAAACACAAATTTCACCAATAGGACCTATG...GAGAGTGGGGAAATCAAAGTAGATGCTTAGTTTTAACTTGGGAATGGTGGCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR GCA 90 bp | ACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACATGAAAATGTATTCTAGTGTGTTTCTTTaGGCAAGATTTCCACCTTCC | + |
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Preference number: 4 (lower is better) Translates to: TLWSLVGFSENRKYMKMYSSVFL*ARFPPS Trigger: GGAAGGTGGAAATCTTGCGCAAAGAAACACACTAGA...ATACATTTTCATGTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| 3UTR CAA 72 bp | TTTATACAGAGCTATAGTGAGCTCAGAAATTTCACTTaGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: FIQSYSELRNFT*WSLVGFSENRK Trigger: CTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAGCTCACTATAGCTCTGTATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS GCA 90 bp | AGGTCACAGCAGCTAGCAAGATTCCTGAGGCTGGACACGTTGTCTTaGCAGGGGCCTGAGAAAGAAGGCATGTTGGTGCCATTCAGCGAA | + |
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Preference number: 5 (lower is better) Translates to: RSQQLARFLRLDTLS*QGPEKEGMLVPFSE Trigger: TTCGCTGAATGGCACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAGCCTCAGGAATCTTGCTAGCTGCTGTGACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CCA 90 bp | GGCTGGACACGTTGTCTTGCCAGGGGCCTGAGAAAGAAGGCATGTTaGTGCCATTCAGCGAAGTACTCTGGAAAAGCTCTCTGCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: GWTRCLARGLRKKAC*CHSAKYSGKALCST Trigger: TGTGCTGCAGAGAGCTTTTCCAGAGTACTTCGCTGAATGGCACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CAA 90 bp | TGCCTTGAATCTGAGGTAATCCCCTTAGCTGTGAGCCTACAGGTAAGAGACCACCAGCTGCTCTGGCCTTaGAGCTGTGTCGAGAACCAG | + |
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Preference number: 5 (lower is better) Translates to: CLESEVIPLAVSLQVRDHQLLWP*SCVENQ Trigger: CTGGTTCTCGACACAGCTCAAAGGCCAGAGCAGCTG...GTGGTCTCTTACCTGTAGGCTCACAGCTAAGGGGATTACCTCAGATTCAAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS GCA 90 bp | AAAGCCTCCAGTCATGACTGCATGGATTTCAGAGATGGTCATGTCTaGAAGGTAGGGACGGATGAGCAGAGGTACTTCTGTCAGCCCCAC | + |
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Preference number: 5 (lower is better) Translates to: KASSHDCMDFRDGHV*KVGTDEQRYFCQPH Trigger: GTGGGGCTGACAGAAGTACCTCTGCTCATCCGTCCCTACCTTGCAGACATGACCATCTCTGAAATCCATGCAGTCATGACTGGAGGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS GCA 90 bp | TGGACACGTTGTCTTGCCAGGGGCCTGAGAAAGAAGGCATGTTGGTaGCATTCAGCGAAGTACTCTGGAAAAGCTCTCTGCAGCACACAT | + |
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Preference number: 5 (lower is better) Translates to: WTRCLARGLRKKACW*HSAKYSGKALCSTH Trigger: ATGTGTGCTGCAGAGAGCTTTTCCAGAGTACTTCGCTGAATGGCACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CCA 90 bp | TGTGTTTCTTTGCGCAAGATTTCCACCTTCCATGAGCTCGAGACCTaGGTTCTCCATGCCATTCTCCACTCTGGCCTGGGAAACAGACTT | + |
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Preference number: 5 (lower is better) Translates to: CVSLRKISTFHELET*VLHAILHSGLGNRL Trigger: AAGTCTGTTTCCCAGGCCAGAGTGGAGAATGGCATGGAGAACCCAGGTCTCGAGCTCATGGAAGGTGGAAATCTTGCGCAAAGAAACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CAA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTAGTCCCTCCTTGCTCTaGAACTTGGACTCTTTGACT | + |
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Preference number: 5 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSSPSLL*NLDSLT Trigger: AGTCAAAGAGTCCAAGTTCAAGAGCAAGGAGGGACT...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CAA 90 bp | CTTAGCTGTGAGCCTACAGGTAAGAGACCACGGGGTTTGCCACCATTCCCAAGTGGTGCCCATCTTGCTTaGAAGAAACAAGGCAATCTT | + |
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Preference number: 5 (lower is better) Translates to: LSCEPTGKRPRGLPPFPSGAHLA*KKQGNL Trigger: AAGATTGCCTTGTTTCTTCAAAGCAAGATGGGCACC...ACTTGGGAATGGTGGCAAACCCCGTGGTCTCTTACCTGTAGGCTCACAGCTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CAA 90 bp | CAGGCTTGCCTTGAATCTGAGGTAATCCCCTTAGCTGTGAGCCTACAGGTAAGATCTGGATATACCAGTTaGGACAGGGCAAGTGCACAA | + |
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Preference number: 5 (lower is better) Translates to: QACLESEVIPLAVSLQVRSGYTS*DRASAQ Trigger: TTGTGCACTTGCCCTGTCCAAACTGGTATATCCAGA...TCTTACCTGTAGGCTCACAGCTAAGGGGATTACCTCAGATTCAAGGCAAGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS TCA 90 bp | GGAAAAGCTCTCTGCAGCACACATATGTCTCATAGGTCCTATTGGTaGAATTTGTGTTTAGGAATGAGACACAGTCAGTTTCAGCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: GKALCSTHMSHRSYW*NLCLGMRHSQFQRL Trigger: GAGGCGCTGAAACTGACTGTGTCTCATTCCTAAACACAAATTTCACCAATAGGACCTATGAGACATATGTGTGCTGCAGAGAGCTTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CAA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACTCCTTGCTCTTGAACTaGGACTCTTTGACTTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: LRNFTLWSLVGFSENRKYSLLLN*DSLTSG Trigger: TCCAGAAGTCAAAGAGTCCAAGTTCAAGAGCAAGGA...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS-3UTR CAA 90 bp | CTCAGAAATTTCACTTTGTGGAGTTTAGTGGGGTTCTCAGAGAATAGGAAGTACTTGAACTTGGACTCTTaGACTTCTGGATATACCAGT | + |
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Preference number: 5 (lower is better) Translates to: LRNFTLWSLVGFSENRKYLNLDS*TSGYTS Trigger: ACTGGTATATCCAGAAGTCAAAGAGTCCAAGTTCAA...GTACTTCCTATTCTCTGAGAACCCCACTAAACTCCACAAAGTGAAATTTCTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS GCA 72 bp | CAGCTAGCAAGATTCCTGAGGCTGGACACGTTGTCTTaGCAGGGGCCTGAGAAAGAAGGCATGTTGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: QLARFLRLDTLS*QGPEKEGMLVP Trigger: TGGCACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAGCCTCAGGAATCTTGCTAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 90 bp | AGGCTGGACACGTTGTCTTGCCAGGGGCCTGAGAAAGAAGGCATGTaGGTGCCATTCAGCGAAGTACTCTGGAAAAGCTCTCTGCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: RLDTLSCQGPEKEGM*VPFSEVLWKSSLQH Trigger: GTGCTGCAGAGAGCTTTTCCAGAGTACTTCGCTGAATGGCACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 72 bp | TCACAGCAGCTAGCAAGATTCCTGAGGCTGGACACGTaGTCTTGCCAGGGGCCTGAGAAAGAAGGCATGTTG | + |
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Preference number: 6 (lower is better) Translates to: SQQLARFLRLDT*SCQGPEKEGML Trigger: CAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAGCCTCAGGAATCTTGCTAGCTGCTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CCA 72 bp | AACCAGCCACAAGATCTGGCTAACTACAGAGGCTCCTaGCAACACCCACTTCAGACAACGTCTCAGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: NQPQDLANYRGS*QHPLQTTSQAE Trigger: TTCTGCCTGAGACGTTGTCTGAAGTGGGTGTTGCCAGGAGCCTCTGTAGTTAGCCAGATCTTGTGGCTGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 72 bp | CAAAACACCGTCCTCCAGCATACCGCACTGTGGTGTTaGGAGCAGGCAAAGAGGATGAGGATGAACATACAG | + |
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Preference number: 6 (lower is better) Translates to: QNTVLQHTALWC*EQAKRMRMNIQ Trigger: CTGTATGTTCATCCTCATCCTCTTTGCCTGCTCCAAACACCACAGTGCGGTATGCTGGAGGACGGTGTTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 72 bp | ACGTTGTCTTGCCAGGGGCCTGAGAAAGAAGGCATGTaGGTGCCATTCAGCGAAGTACTCTGGAAAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: TLSCQGPEKEGM*VPFSEVLWKSS Trigger: AGAGCTTTTCCAGAGTACTTCGCTGAATGGCACCAACATGCCTTCTTTCTCAGGCCCCTGGCAAGACAACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 90 bp | AGGGTAGCATTGACGAAGGCCAATACAGCCAGAAAGGCAATCAGGTaGGCTGCAACATTAGCAACAAGGCTTATGGCTTCTGTGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RVALTKANTARKAIR*AATLATRLMASVAP Trigger: TGGAGCCACAGAAGCCATAAGCCTTGTTGCTAATGTTGCAGCCAACCTGATTGCCTTTCTGGCTGTATTGGCCTTCGTCAATGCTACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 72 bp | CCTCGAGGCAGCTTCAGTCCCTCCTTGCTCTTGAACTaGGACTCTTTGACTTCTGGATATACCAGTTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: PRGSFSPSLLLN*DSLTSGYTSLD Trigger: GTCCAAACTGGTATATCCAGAAGTCAAAGAGTCCAAGTTCAAGAGCAAGGAGGGACTGAAGCTGCCTCGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS GCA 72 bp | AGTCATGACTGCATGGATTTCAGAGATGGTCATGTCTaGAAGGTAGGGACGGATGAGCAGAGGTACTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SHDCMDFRDGHV*KVGTDEQRYFC Trigger: ACAGAAGTACCTCTGCTCATCCGTCCCTACCTTGCAGACATGACCATCTCTGAAATCCATGCAGTCATGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS GCA 72 bp | AATCCCAAAGGATATGAAGGCTCCCAACATTGTGCCTaGTATGGTAGCAAAGCCTCCAGTCATGACTGCATG | + |
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Preference number: 6 (lower is better) Translates to: NPKGYEGSQHCA*YGSKASSHDCM Trigger: CATGCAGTCATGACTGGAGGCTTTGCTACCATAGCAGGCACAATGTTGGGAGCCTTCATATCCTTTGGGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS TCA 72 bp | AACCAGCATGTCTTTCAAAGAAACTTCTCGCCTTCGTaGAAGGCTGAAAAATCCTCCTGCTCCAGAGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: NQHVFQRNFSPS*KAEKSSCSRER Trigger: CCTCTCTCTGGAGCAGGAGGATTTTTCAGCCTTTCACGAAGGCGAGAAGTTTCTTTGAAAGACATGCTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS CAA 72 bp | TTGACGAAGGCCAATACAGCCAGAAAGGCAATCAGGTaGGCTGCAACATTAGCAACAAGGCTTATGGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LTKANTARKAIR*AATLATRLMAS Trigger: AGAAGCCATAAGCCTTGTTGCTAATGTTGCAGCCAACCTGATTGCCTTTCTGGCTGTATTGGCCTTCGTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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| CDS TCA 72 bp | CATAAGCTAAACACAAGAGACCAAGCAGGATCTTTCTaGATAAACCAGCATGTCTTTCAAAGAAACTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: HKLNTRDQAGSF*INQHVFQRNFS Trigger: CGAGAAGTTTCTTTGAAAGACATGCTGGTTTATTCAGAAAGATCCTGCTTGGTCTCTTGTGTTTAGCTTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110521.3 |
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