RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC25A30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022003

Ensembl transcript IDs: ENSMUST00000022580.8, ENSMUST00000227894.2

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGTCTCCATCCATTGCTCCCATCCCAGAAGCCATGATGAGCTGTaGAGTAAGAGGCAGCCAGAAGCACAGGAGGGGCTACCGTCGCGG +
Preference number: 1 (lower is better)
Translates to: LVSIHCSHPRSHDEL*SKRQPEAQEGLPSR
Trigger: CCGCGACGGTAGCCCCTCCTGTGCTTCTGGCTGCCTCTTACTGCACAGCTCATCATGGCTTCTGGGATGGGAGCAATGGATGGAGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR GCA 90 bp CCAGGACCAACGCATGGCAATCTGAGGAACCTGGTCTCCATCCATTaGTCCCATCCCAGAAGCCATGATGAGCTGTGCAGTAAGAGGCAG +
Preference number: 1 (lower is better)
Translates to: PGPTHGNLRNLVSIH*SHPRSHDELCSKRQ
Trigger: CTGCCTCTTACTGCACAGCTCATCATGGCTTCTGGGATGGGAGCAATGGATGGAGACCAGGTTCCTCAGATTGCCATGCGTTGGTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 90 bp CCACCGGTGAGTGGGTGTTCCTATGCTCTAGGCTCTGAACACAGATaGAAGCATCCAGGACCAACGCATGGCAATCTGAGGAACCTGGTC +
Preference number: 1 (lower is better)
Translates to: PPVSGCSYALGSEHR*KHPGPTHGNLRNLV
Trigger: GACCAGGTTCCTCAGATTGCCATGCGTTGGTCCTGGATGCTTTCATCTGTGTTCAGAGCCTAGAGCATAGGAACACCCACTCACCGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 90 bp GCTCTGAACACAGATGAAAGCATCCAGGACCAACGCATGGCAATCTaGGGAACCTGGTCTCCATCCATTGCTCCCATCCCAGAAGCCATG +
Preference number: 1 (lower is better)
Translates to: ALNTDESIQDQRMAI*GTWSPSIAPIPEAM
Trigger: CATGGCTTCTGGGATGGGAGCAATGGATGGAGACCAGGTTCCTCAGATTGCCATGCGTTGGTCCTGGATGCTTTCATCTGTGTTCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR GCA 90 bp GAGGCTACTCTCCAGGAAGAAAGCAGCAGGCGGTTCTCATTTCCTTaGAGGTTTTCTACAGCAAGGACGATCTGTTATGTACATCAGTTA +
Preference number: 1 (lower is better)
Translates to: EATLQEESSRRFSFP*RFSTARTICYVHQL
Trigger: TAACTGATGTACATAACAGATCGTCCTTGCTGTAGAAAACCTGCAAGGAAATGAGAACCGCCTGCTGCTTTCTTCCTGGAGAGTAGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 90 bp AGAGAAGGCAGGTTAAGACCCTGCCCTATAAGGCACTTAATAAATTaGCACTATCCTGGTCGTAAAATACTGCAAGCTTGCCTTGAAACA +
Preference number: 1 (lower is better)
Translates to: REGRLRPCPIRHLIN*HYPGRKILQACLET
Trigger: TGTTTCAAGGCAAGCTTGCAGTATTTTACGACCAGGATAGTGTCAATTTATTAAGTGCCTTATAGGGCAGGGTCTTAACCTGCCTTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 90 bp AAGTGTGAAGTAGTTTTCACCATACTTGAGGAAATTGACAGGTGGTaGAGTGTTACAGCCACACCCACATCACCAAGTGTTTCAAGTTGT +
Preference number: 1 (lower is better)
Translates to: KCEVVFTILEEIDRW*SVTATPTSPSVSSC
Trigger: ACAACTTGAAACACTTGGTGATGTGGGTGTGGCTGTAACACTTCACCACCTGTCAATTTCCTCAAGTATGGTGAAAACTACTTCACACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR TCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTGTAAAATCTCTTCACTaGCAGGAAACGAAAGCTCCC +
Preference number: 2 (lower is better)
Translates to: LTGVRTLILLAAASVVFPVKSLH*QETKAP
Trigger: GGGAGCTTTCGTTTCCTGTCAGTGAAGAGATTTTAC...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR TCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTGAGTCTTACTGTAAGTaGAAGATTCTGCCCAAGCAG +
Preference number: 2 (lower is better)
Translates to: LTGVRTLILLAAASVVFPESYCK*KILPKQ
Trigger: CTGCTTGGGCAGAATCTTTCACTTACAGTAAGACTC...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp TGCCATCTAATGGCATGTGAGGGAATTGTCTTTAAGCCACCATTGGGCCAGCTCAAACCTGCATGCTTCTaGCTCAAGGAGGAAGGGGCC +
Preference number: 2 (lower is better)
Translates to: CHLMACEGIVFKPPLGQLKPACF*LKEEGA
Trigger: GGCCCCTTCCTCCTTGAGGCAGAAGCATGCAGGTTT...GAGCTGGCCCAATGGTGGCTTAAAGACAATTCCCTCACATGCCATTAGATGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR TCA 90 bp TGCCATCTAATGGCATGTGAGGGAATTGTCTTTAAGCCACCATTGGGCCAGCTCGGCTCTGAACACAGATaGAAGCATCCAGGACCAACG +
Preference number: 2 (lower is better)
Translates to: CHLMACEGIVFKPPLGQLGSEHR*KHPGPT
Trigger: CGTTGGTCCTGGATGCTTTCATCTGTGTTCAGAGCC...GAGCTGGCCCAATGGTGGCTTAAAGACAATTCCCTCACATGCCATTAGATGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp TGCCATCTAATGGCATGTGAGGGAATTGTCTTTAAGCCACCATTGGGCCAGCTCCTGGTCTCCATCCATTaGTCCCATCCCAGAAGCCAT +
Preference number: 2 (lower is better)
Translates to: CHLMACEGIVFKPPLGQLLVSIH*SHPRSH
Trigger: ATGGCTTCTGGGATGGGAGCAATGGATGGAGACCAG...GAGCTGGCCCAATGGTGGCTTAAAGACAATTCCCTCACATGCCATTAGATGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTGTAAGTGAAAGATTCTaGCCAAGCAGGAACCATGAA +
Preference number: 2 (lower is better)
Translates to: LTGVRTLILLAAASVVFPVSERF*PSRNHE
Trigger: TTCATGGTTCCTGCTTGGGCAGAATCTTTCACTTAC...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR TCA 90 bp CATTGCTCCAGCTTCGAGCCTCCTTTAGTGCTAATGAGGTTTTCACAGGGCCAACTATGCTCTAGGCTCTaGACACAGATGAAAGCATCC +
Preference number: 2 (lower is better)
Translates to: HCSSFEPPLVLMRFSQGQLCSRL*TQMKAS
Trigger: GGATGCTTTCATCTGTGTTCAGAGCCTAGAGCATAG...TTGGCCCTGTGAAAACCTCATTAGCACTAAAGGAGGCTCGAAGCTGGAGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR CAA 90 bp CGAGGCTACTCTCCAGGAAGAAAGCAGCAGGCGGTTCTCATTTCCTaGCAGGTTTTCTACAGCAAGGACGATCTGTTATGTACATCAGTT +
Preference number: 2 (lower is better)
Translates to: RGYSPGRKQQAVLIS*QVFYSKDDLLCTSV
Trigger: AACTGATGTACATAACAGATCGTCCTTGCTGTAGAAAACCTGCAAGGAAATGAGAACCGCCTGCTGCTTTCTTCCTGGAGAGTAGCCTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCAGAGAAAACCTGCATaGTTCTGCCTCAAGGAGGAA +
Preference number: 2 (lower is better)
Translates to: LATLHRASVTTQTQLPSTQRKPA*FCLKEE
Trigger: TTCCTCCTTGAGGCAGAAGCATGCAGGTTTTCTCTG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCGGTTCTCATTTCCTTaGAGGTTTTCTACAGCAAGG +
Preference number: 2 (lower is better)
Translates to: LATLHRASVTTQTQLPSTRFSFP*RFSTAR
Trigger: CCTTGCTGTAGAAAACCTGCAAGGAAATGAGAACCG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTCCCTCAGAGAAAACCTaGATGCTTCTGCCTCAAGGA +
Preference number: 2 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIPSEKT*MLLPQG
Trigger: TCCTTGAGGCAGAAGCATGCAGGTTTTCTCTGAGGG...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR CCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCAGATGGAAAAGGTATaGAATAAAAAGCGCCCAACC +
Preference number: 2 (lower is better)
Translates to: LATLHRASVTTQTQLPSTQMEKV*NKKRPT
Trigger: GGTTGGGCGCTTTTTATTCCATACCTTTTCCATCTG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR TCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTACTGCAAGCTTGCCTTaGAACATGAAGTTTTACAGT +
Preference number: 2 (lower is better)
Translates to: LATLHRASVTTQTQLPSTTASLP*NMKFYS
Trigger: ACTGTAAAACTTCATGTTTCAAGGCAAGCTTGCAGT...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR GCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCTGGTCGTAAAATACTaGAAGCTTGCCTTGAAACAT +
Preference number: 2 (lower is better)
Translates to: LATLHRASVTTQTQLPSTLVVKY*KLALKH
Trigger: ATGTTTCAAGGCAAGCTTGCAGTATTTTACGACCAG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR TCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCTGTCATCACACAAATaGAAGAGGAAGGTAGAAATT +
Preference number: 2 (lower is better)
Translates to: LATLHRASVTTQTQLPSTLSSHK*KRKVEI
Trigger: AATTTCTACCTTCCTCTTTCATTTGTGTGATGACAG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR GCA 72 bp ATAAACAGGCCCTCGGGCCATCGATGTGGGCCATCGTaGAGCTCAGTGTGGGGAAGATACCCAGAATGCACC +
Preference number: 3 (lower is better)
Translates to: INRPSGHRCGPS*SSVWGRYPECT
Trigger: GGTGCATTCTGGGTATCTTCCCCACACTGAGCTGCACGATGGCCCACATCGATGGCCCGAGGGCCTGTTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR CAA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTGGCAAATGGTTAGTGTaGCCTCACAAAGGTCGAGTC +
Preference number: 3 (lower is better)
Translates to: LTGVRTLILLAAASVVFPGKWLV*PHKGRV
Trigger: GACTCGACCTTTGTGAGGCAACACTAACCATTTGCC...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR GCA 72 bp ACGCATGGCAATCTGAGGAACCTGGTCTCCATCCATTaGTCCCATCCCAGAAGCCATGATGAGCTGTGCAGT +
Preference number: 3 (lower is better)
Translates to: THGNLRNLVSIH*SHPRSHDELCS
Trigger: ACTGCACAGCTCATCATGGCTTCTGGGATGGGAGCAATGGATGGAGACCAGGTTCCTCAGATTGCCATGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 72 bp ACAGATGAAAGCATCCAGGACCAACGCATGGCAATCTaGGGAACCTGGTCTCCATCCATTGCTCCCATCCCA +
Preference number: 3 (lower is better)
Translates to: TDESIQDQRMAI*GTWSPSIAPIP
Trigger: TGGGATGGGAGCAATGGATGGAGACCAGGTTCCTCAGATTGCCATGCGTTGGTCCTGGATGCTTTCATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR CAA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTGGAGTGCACTGGCCATaGCTCCAGCTTCGAGCCTCC +
Preference number: 3 (lower is better)
Translates to: LATLHRASVTTQTQLPSTGVHWP*LQLRAS
Trigger: GGAGGCTCGAAGCTGGAGCAATGGCCAGTGCACTCC...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 72 bp AGTGGGTGTTCCTATGCTCTAGGCTCTGAACACAGATaGAAGCATCCAGGACCAACGCATGGCAATCTGAGG +
Preference number: 3 (lower is better)
Translates to: SGCSYALGSEHR*KHPGPTHGNLR
Trigger: CCTCAGATTGCCATGCGTTGGTCCTGGATGCTTTCATCTGTGTTCAGAGCCTAGAGCATAGGAACACCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR CCA 72 bp AACCTGCAGGCACTGGGCACCCTTCTAGAAAGCTGTTaGCGCTTAGAGACACTGTCTCAGAAGAAACAAACT +
Preference number: 3 (lower is better)
Translates to: NLQALGTLLESC*RLETLSQKKQT
Trigger: AGTTTGTTTCTTCTGAGACAGTGTCTCTAAGCGCCAACAGCTTTCTAGAAGGGTGCCCAGTGCCTGCAGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR CAA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCCTGGTCTCCATCCATaGCTCCCATCCCAGAAGCCA +
Preference number: 3 (lower is better)
Translates to: LATLHRASVTTQTQLPSTPGLHP*LPSQKP
Trigger: TGGCTTCTGGGATGGGAGCAATGGATGGAGACCAGG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR GCA 72 bp TCACAAAGGTCGAGTCTTACTGTAAGTGAAAGATTCTaGCCAAGCAGGAACCATGAAGCCGTGCAGTATGCT +
Preference number: 3 (lower is better)
Translates to: SQRSSLTVSERF*PSRNHEAVQYA
Trigger: AGCATACTGCACGGCTTCATGGTTCCTGCTTGGGCAGAATCTTTCACTTACAGTAAGACTCGACCTTTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 72 bp GTAGTTTTCACCATACTTGAGGAAATTGACAGGTGGTaGAGTGTTACAGCCACACCCACATCACCAAGTGTT +
Preference number: 3 (lower is better)
Translates to: VVFTILEEIDRW*SVTATPTSPSV
Trigger: AACACTTGGTGATGTGGGTGTGGCTGTAACACTTCACCACCTGTCAATTTCCTCAAGTATGGTGAAAACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR CAA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTCCATACTTGAGGAAATaGACAGGTGGTGAAGTGTTA +
Preference number: 3 (lower is better)
Translates to: LATLHRASVTTQTQLPSTPYLRK*TGGEVL
Trigger: TAACACTTCACCACCTGTCAATTTCCTCAAGTATGG...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR-3UTR CAA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTGCGGTTCTCATTTCCTaGCAGGTTTTCTACAGCAAG +
Preference number: 3 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIAVLIS*QVFYSK
Trigger: CTTGCTGTAGAAAACCTGCAAGGAAATGAGAACCGC...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR TCA 72 bp AGCTCACGAATAAATATGGAGCACAGGAGCCATTTTTaGCATTACAGACTAGCAACATTACACAGAGCATCA +
Preference number: 3 (lower is better)
Translates to: SSRINMEHRSHF*HYRLATLHRAS
Trigger: TGATGCTCTGTGTAATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGTGAGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTGGTGATGTCATAGACTaGAAGCTCCACGCCGACCAC +
Preference number: 4 (lower is better)
Translates to: LTGVRTLILLAAASVVFPGDVID*KLHADH
Trigger: GTGGTCGGCGTGGAGCTTCCAGTCTATGACATCACC...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTGTCTCCCATCAGGCCTaGGAGTATCAGGTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: LTGVRTLILLAAASVVFPVSHQA*EYQVLL
Trigger: AAGAAGCACCTGATACTCTCAGGCCTGATGGGAGAC...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTTCTCGAAGGGCTCTCTaGTTCATCATGCGGGTTCTC +
Preference number: 4 (lower is better)
Translates to: LTGVRTLILLAAASVVFPSRRAL*FIMRVL
Trigger: GAGAACCCGCATGATGAATCAGAGAGCCCTTCGAGA...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR GCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTTATAGCCCGCACATCTaGCATCTCGAAGGGCTCTCT +
Preference number: 4 (lower is better)
Translates to: LTGVRTLILLAAASVVFPYSPHI*HLEGLS
Trigger: AGAGAGCCCTTCGAGATGGCAGATGTGCGGGCTATA...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CCA 90 bp TGCCATCTAATGGCATGTGAGGGAATTGTCTTTAAGCCACCATTGGGCCAGCTCACAATGGCTGCCCTCTaGGCTGTGAGGGACACACCC +
Preference number: 4 (lower is better)
Translates to: CHLMACEGIVFKPPLGQLTMAAL*AVRDTP
Trigger: GGGTGTGTCCCTCACAGCCCAGAGGGCAGCCATTGT...GAGCTGGCCCAATGGTGGCTTAAAGACAATTCCCTCACATGCCATTAGATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTTTCCACACACAACATTaGCCAGCAGGGTTTCATCTT +
Preference number: 4 (lower is better)
Translates to: LTGVRTLILLAAASVVFPFHTQH*PAGFHL
Trigger: AAGATGAAACCCTGCTGGTCAATGTTGTGTGTGGAA...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR GCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTGCCGACCACAATGGCTaGCCTCTGGGCTGTGAGGGA +
Preference number: 4 (lower is better)
Translates to: LATLHRASVTTQTQLPSTADHNG*PLGCEG
Trigger: TCCCTCACAGCCCAGAGGGCAGCCATTGTGGTCGGC...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR CAA 72 bp CAACCTGCAGGCACTGGGCACCCTTCTAGAAAGCTGTaGGCGCTTAGAGACACTGTCTCAGAAGAAACAAAC +
Preference number: 4 (lower is better)
Translates to: QPAGTGHPSRKL*ALRDTVSEETN
Trigger: GTTTGTTTCTTCTGAGACAGTGTCTCTAAGCGCCAACAGCTTTCTAGAAGGGTGCCCAGTGCCTGCAGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTAACCGCTTCAGGCTCTaGTACGTGCCGATCTTGATG +
Preference number: 4 (lower is better)
Translates to: LATLHRASVTTQTQLPSTNRFRL*YVPILM
Trigger: CATCAAGATCGGCACGTACCAGAGCCTGAAGCGGTT...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
3UTR CAA 72 bp TCTCCAGGAAGAAAGCAGCAGGCGGTTCTCATTTCCTaGCAGGTTTTCTACAGCAAGGACGATCTGTTATGT +
Preference number: 4 (lower is better)
Translates to: SPGRKQQAVLIS*QVFYSKDDLLC
Trigger: ACATAACAGATCGTCCTTGCTGTAGAAAACCTGCAAGGAAATGAGAACCGCCTGCTGCTTTCTTCCTGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTCCACCAGGCCACAGGTaGAGCTCGAGAGAAAATGCG +
Preference number: 4 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIPPGHR*SSRENA
Trigger: CGCATTTTCTCTCGAGCTTCACCTGTGGCCTGGTGG...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR GCA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTAAATGTGCCGCATTCTaGTGTGATGGAGGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIKCAAF*CDGGQP
Trigger: GGGCTGGCCTCCATCACAGCAGAATGCGGCACATTT...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTCGGATTAGCAATAGCTaGGGATATGACTCCAGACAG +
Preference number: 4 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIRISNS*GYDSRQ
Trigger: CTGTCTGGAGTCATATCCTCAGCTATTGCTAATCCG...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTGCTGGTAAATGCTCATaGAGCTGTCTATCATGCCTC +
Preference number: 4 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIAGKCS*SCLSCL
Trigger: GAGGCATGATAGACAGCTTCATGAGCATTTACCAGC...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR TCA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTAAGTCAAAAAGAAAATaGTATTCCAAGGACCAAGGC +
Preference number: 4 (lower is better)
Translates to: LATLHRASVTTQTQLPSTKSKRK*YSKDQG
Trigger: GCCTTGGTCCTTGGAATATCATTTTCTTTTTGACTT...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR GCA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTTCATTCTTCCATGTCTaGAATAGGCAATCCAAGGTA +
Preference number: 4 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNISFFHV*NRQSKV
Trigger: TACCTTGGATTGCCTATTGCAGACATGGAAGAATGA...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS TCA 90 bp GATGGTTCCATAGGAGGCCTGGCGCAGCATTGCGGGTGCAATCCCTaGATACAGCGCCTTCAGGCCTTCTTCTCGGCCTATCCTCATCAG +
Preference number: 5 (lower is better)
Translates to: DGSIGGLAQHCGCNP*IQRLQAFFSAYPHQ
Trigger: CTGATGAGGATAGGCCGAGAAGAAGGCCTGAAGGCGCTGTATTCAGGGATTGCACCCGCAATGCTGCGCCAGGCCTCCTATGGAACCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022580.8
ENSMUST00000227894.2
CDS GCA 90 bp TACAGCGCCTTCAGGCCTTCTTCTCGGCCTATCCTCATCAGCGCGTaGAGCATGCCTCGGTACCTGATCTCTCGGAAGTTGGCATCATTT +
Preference number: 5 (lower is better)
Translates to: YSAFRPSSRPILISA*SMPRYLISRKLASF
Trigger: AAATGATGCCAACTTCCGAGAGATCAGGTACCGAGGCATGCTGCACGCGCTGATGAGGATAGGCCGAGAAGAAGGCCTGAAGGCGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS GCA 90 bp TATAGCCCGCACATCTGCCATCTCGAAGGGCTCTCTGATTCATCATaGGGGTTCTCACAACATCAACTGGGTTTGAGGCCAAGGCCCCCA +
Preference number: 5 (lower is better)
Translates to: YSPHICHLEGLSDSS*GFSQHQLGLRPRPP
Trigger: TGGGGGCCTTGGCCTCAAACCCAGTTGATGTTGTGAGAACCCGCATGATGAATCAGAGAGCCCTTCGAGATGGCAGATGTGCGGGCTATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS TCA 90 bp CTTCTCGGCCTATCCTCATCAGCGCGTGCAGCATGCCTCGGTACCTaGTCTCTCGGAAGTTGGCATCATTTGTCTGGCCTTGAATCTGAA +
Preference number: 5 (lower is better)
Translates to: LLGLSSSARAACLGT*SLGSWHHLSGLESE
Trigger: TTCAGATTCAAGGCCAGACAAATGATGCCAACTTCCGAGAGATCAGGTACCGAGGCATGCTGCACGCGCTGATGAGGATAGGCCGAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS GCA 90 bp ATGTCTGCAATAGGCAATCCAAGGTACCCTTATAGCCCGCACATCTaGCATCTCGAAGGGCTCTCTGATTCATCATGCGGGTTCTCACAA +
Preference number: 5 (lower is better)
Translates to: MSAIGNPRYPYSPHI*HLEGLSDSSCGFSQ
Trigger: TTGTGAGAACCCGCATGATGAATCAGAGAGCCCTTCGAGATGGCAGATGTGCGGGCTATAAGGGTACCTTGGATTGCCTATTGCAGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CAA 90 bp CTGACAGGTGTGCGCACACTCATCCTTCTCGCAGCCGCCTCTGTAGTTTTCCCTCAAGGCGCAACCAATTaGGCCAAAATCCTTTATATA +
Preference number: 5 (lower is better)
Translates to: LTGVRTLILLAAASVVFPQGATN*AKILYI
Trigger: TATATAAAGGATTTTGGCCAAATTGGTTGCGCCTTG...AGGGAAAACTACAGAGGCGGCTGCGAGAAGGATGAGTGTGCGCACACCTGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CAA 90 bp CATTGCTCCAGCTTCGAGCCTCCTTTAGTGCTAATGAGGTTTTCACAGGGCCAAATCATTTGTCTGGCCTaGAATCTGAAGCCGTGTCTT +
Preference number: 5 (lower is better)
Translates to: HCSSFEPPLVLMRFSQGQIICLA*NLKPCL
Trigger: AAGACACGGCTTCAGATTCAAGGCCAGACAAATGAT...TTGGCCCTGTGAAAACCTCATTAGCACTAAAGGAGGCTCGAAGCTGGAGCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CAA 90 bp CATTGCTCCAGCTTCGAGCCTCCTTTAGTGCTAATGAGGTTTTCACAGGGCCAAGGAAGTTGGCATCATTaGTCTGGCCTTGAATCTGAA +
Preference number: 5 (lower is better)
Translates to: HCSSFEPPLVLMRFSQGQGSWHH*SGLESE
Trigger: TTCAGATTCAAGGCCAGACAAATGATGCCAACTTCC...TTGGCCCTGTGAAAACCTCATTAGCACTAAAGGAGGCTCGAAGCTGGAGCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS GCA 90 bp GCTCATGAAGCTGTCTATCATGCCTCCTTGAACAGCGCTGTTCTGTaGTTGCATTCGGATTTTCAAAACATCAGTCGGATTAGCAATAGC +
Preference number: 5 (lower is better)
Translates to: AHEAVYHASLNSAVL*LHSDFQNISRISNS
Trigger: GCTATTGCTAATCCGACTGATGTTTTGAAAATCCGAATGCAAGCACAGAACAGCGCTGTTCAAGGAGGCATGATAGACAGCTTCATGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CAA 90 bp ACGAATAAATATGGAGCACAGGAGCCATTTTTGACATTACAGACTAGCAACATTCAACATCAACTGGGTTaGAGGCCAAGGCCCCCACCA +
Preference number: 5 (lower is better)
Translates to: TNKYGAQEPFLTLQTSNIQHQLG*RPRPPP
Trigger: TGGTGGGGGCCTTGGCCTCAAACCCAGTTGATGTTG...AATGTTGCTAGTCTGTAATGTCAAAAATGGCTCCTGTGCTCCATATTTATTCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS-3UTR CAA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTATTCCACACACAACATaGACCAGCAGGGTTTCATCT +
Preference number: 5 (lower is better)
Translates to: LATLHRASVTTQTQLPSTIPHTT*TSRVSS
Trigger: AGATGAAACCCTGCTGGTCAATGTTGTGTGTGGAAT...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS TCA 90 bp TGCTTGCATTCGGATTTTCAAAACATCAGTCGGATTAGCAATAGCTaGGGATATGACTCCAGACAGAATTCCACACACAACATTGACCAG +
Preference number: 5 (lower is better)
Translates to: CLHSDFQNISRISNS*GYDSRQNSTHNIDQ
Trigger: CTGGTCAATGTTGTGTGTGGAATTCTGTCTGGAGTCATATCCTCAGCTATTGCTAATCCGACTGATGTTTTGAAAATCCGAATGCAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022580.8
ENSMUST00000227894.2
CDS-3UTR CAA 90 bp CTAGCAACATTACACAGAGCATCAGTAACAACACAAACACAACTGCCTTCCACTGTCCAGTTTCTTCAGTaGTTCGTAAGTCAAAAAGAA +
Preference number: 5 (lower is better)
Translates to: LATLHRASVTTQTQLPSTVQFLQ*FVSQKE
Trigger: TTCTTTTTGACTTACGAACAACTGAAGAAACTGGAC...AGTGGAAGGCAGTTGTGTTTGTGTTGTTACTGATGCTCTGTGTAATGTTGCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS CCA 72 bp ACTGGAAGCTCCACGCCGACCACAATGGCTGCCCTCTaGGCTGTGAGGGACACACCCTTCCACAGTCCTCTA +
Preference number: 6 (lower is better)
Translates to: TGSSTPTTMAAL*AVRDTPFHSPL
Trigger: TAGAGGACTGTGGAAGGGTGTGTCCCTCACAGCCCAGAGGGCAGCCATTGTGGTCGGCGTGGAGCTTCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS TCA 72 bp CAGCTAACCGCTTCAGGCTCTGGTACGTGCCGATCTTaGTGGTTCCATAGGAGGCCTGGCGCAGCATTGCGG +
Preference number: 6 (lower is better)
Translates to: QLTASGSGTCRS*WFHRRPGAALR
Trigger: CCGCAATGCTGCGCCAGGCCTCCTATGGAACCATCAAGATCGGCACGTACCAGAGCCTGAAGCGGTTAGCTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022580.8
ENSMUST00000227894.2
CDS GCA 72 bp TTCAGGCCTTCTTCTCGGCCTATCCTCATCAGCGCGTaGAGCATGCCTCGGTACCTGATCTCTCGGAAGTTG +
Preference number: 6 (lower is better)
Translates to: FRPSSRPILISA*SMPRYLISRKL
Trigger: CAACTTCCGAGAGATCAGGTACCGAGGCATGCTGCACGCGCTGATGAGGATAGGCCGAGAAGAAGGCCTGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS GCA 72 bp ATAGGCAATCCAAGGTACCCTTATAGCCCGCACATCTaGCATCTCGAAGGGCTCTCTGATTCATCATGCGGG +
Preference number: 6 (lower is better)
Translates to: IGNPRYPYSPHI*HLEGLSDSSCG
Trigger: CCCGCATGATGAATCAGAGAGCCCTTCGAGATGGCAGATGTGCGGGCTATAAGGGTACCTTGGATTGCCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS CAA 90 bp GCAATAGCTGAGGATATGACTCCAGACAGAATTCCACACACAACATaGACCAGCAGGGTTTCATCTTCTGGGCGTTCCACAGCTAACCGC +
Preference number: 6 (lower is better)
Translates to: AIAEDMTPDRIPHTT*TSRVSSSGRSTANR
Trigger: GCGGTTAGCTGTGGAACGCCCAGAAGATGAAACCCTGCTGGTCAATGTTGTGTGTGGAATTCTGTCTGGAGTCATATCCTCAGCTATTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022580.8
ENSMUST00000227894.2
CDS TCA 72 bp GAGAAAATGCGTTGCGACAGTGTCTCCCATCAGGCCTaGGAGTATCAGGTGCTTCTTGGTGATGTCATAGAC +
Preference number: 6 (lower is better)
Translates to: EKMRCDSVSHQA*EYQVLLGDVID
Trigger: GTCTATGACATCACCAAGAAGCACCTGATACTCTCAGGCCTGATGGGAGACACTGTCGCAACGCATTTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS GCA 72 bp GCTGTCTATCATGCCTCCTTGAACAGCGCTGTTCTGTaGTTGCATTCGGATTTTCAAAACATCAGTCGGATT +
Preference number: 6 (lower is better)
Translates to: AVYHASLNSAVL*LHSDFQNISRI
Trigger: AATCCGACTGATGTTTTGAAAATCCGAATGCAAGCACAGAACAGCGCTGTTCAAGGAGGCATGATAGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS CAA 72 bp GTCTATCATGCCTCCTTGAACAGCGCTGTTCTGTGCTaGCATTCGGATTTTCAAAACATCAGTCGGATTAGC +
Preference number: 6 (lower is better)
Translates to: VYHASLNSAVLC*HSDFQNISRIS
Trigger: GCTAATCCGACTGATGTTTTGAAAATCCGAATGCAAGCACAGAACAGCGCTGTTCAAGGAGGCATGATAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022580.8
CDS TCA 72 bp TCGGATTTTCAAAACATCAGTCGGATTAGCAATAGCTaGGGATATGACTCCAGACAGAATTCCACACACAAC +
Preference number: 6 (lower is better)
Translates to: SDFQNISRISNS*GYDSRQNSTHN
Trigger: GTTGTGTGTGGAATTCTGTCTGGAGTCATATCCTCAGCTATTGCTAATCCGACTGATGTTTTGAAAATCCGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022580.8
ENSMUST00000227894.2