RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC25A16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071253

Ensembl transcript IDs: ENSMUST00000044977.10, ENSMUST00000144459.2

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGCATGGCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTaGTTGGCATGCAAAGGCCCTGGGTTCGATTCCAGCCCCTCCCCC +
Preference number: 1 (lower is better)
Translates to: WHGAGRLGMWPSGYM*LACKGPGFDSSPSP
Trigger: GGGGGAGGGGCTGGAATCGAACCCAGGGCCTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGCCATGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 90 bp CATGAATGTGATCCCCAGCACCATCCTAAGAAAGGAAGAGGCCAGTaGCATAGCTCAGTGGCATGGCGCTGGCAGGCTGGGGATGTGGCC +
Preference number: 1 (lower is better)
Translates to: HECDPQHHPKKGRGQ*HSSVAWRWQAGDVA
Trigger: GGCCACATCCCCAGCCTGCCAGCGCCATGCCACTGAGCTATGTCACTGGCCTCTTCCTTTCTTAGGATGGTGCTGGGGATCACATTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 90 bp GAGACAAGAGGATTGCCTCTCTACAAAGAGGAGGTCTCTCCACAGTaGGGTCCAAGCCAGCCAGGGCAACATACAGAGATCCCATCAAAA +
Preference number: 1 (lower is better)
Translates to: ETRGLPLYKEEVSPQ*GPSQPGQHTEIPSK
Trigger: TTTTGATGGGATCTCTGTATGTTGCCCTGGCTGGCTTGGACCTCACTGTGGAGAGACCTCCTCTTTGTAGAGAGGCAATCCTCTTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 90 bp TATGTTGGAGCAGGCATGGTGACCCATGCCTGGAATTTCAGTATGTaGGAGGCAGAGACAAGAGGATTGCCTCTCTACAAAGAGGAGGTC +
Preference number: 1 (lower is better)
Translates to: YVGAGMVTHAWNFSM*EAETRGLPLYKEEV
Trigger: GACCTCCTCTTTGTAGAGAGGCAATCCTCTTGTCTCTGCCTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAACATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 90 bp AAGGAAGGACAACTGGGGATATACCTCAGTGTACAGCTGACTTTCTaGTGGGATCTCATCATGCCTGCCATGTACAACGTCCTGGACTCA +
Preference number: 1 (lower is better)
Translates to: KEGQLGIYLSVQLTF*WDLIMPAMYNVLDS
Trigger: TGAGTCCAGGACGTTGTACATGGCAGGCATGATGAGATCCCATCAGAAAGTCAGCTGTACACTGAGGTATATCCCCAGTTGTCCTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 90 bp TTTGCCATTAATAAATATGTTGGAGCAGGCATGGTGACCCATGCCTaGAATTTCAGTATGTGGGAGGCAGAGACAAGAGGATTGCCTCTC +
Preference number: 1 (lower is better)
Translates to: FAINKYVGAGMVTHA*NFSMWEAETRGLPL
Trigger: GAGAGGCAATCCTCTTGTCTCTGCCTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAACATATTTATTAATGGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 90 bp ACAATGCAGAGTTTGGAAAGTATGGTAGGACTAAGGGCAATCTCTTaGACTCAAATGCGAACCTTCTTTTCCTTCCAAATAACACTTTAC +
Preference number: 1 (lower is better)
Translates to: TMQSLESMVGLRAIS*TQMRTFFSFQITLY
Trigger: GTAAAGTGTTATTTGGAAGGAAAAGAAGGTTCGCATTTGAGTTCAAGAGATTGCCCTTAGTCCTACCATACTTTCCAAACTCTGCATTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR GCA 90 bp CTGGAGAGAATTCTGAGAAGAAACATAATAAGAACACTACTTTGTTaGTGGCTCTGTTTCACAGACCTTACATTTTCAGTTCTCATTCTG +
Preference number: 1 (lower is better)
Translates to: LERILRRNIIRTLLC*WLCFTDLTFSVLIL
Trigger: CAGAATGAGAACTGAAAATGTAAGGTCTGTGAAACAGAGCCAGCAACAAAGTAGTGTTCTTATTATGTTTCTTCTCAGAATTCTCTCCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 90 bp GAGAGAATTCTGAGAAGAAACATAATAAGAACACTACTTTGTTGCTaGCTCTGTTTCACAGACCTTACATTTTCAGTTCTCATTCTGCTA +
Preference number: 1 (lower is better)
Translates to: ERILRRNIIRTLLCC*LCFTDLTFSVLILL
Trigger: TAGCAGAATGAGAACTGAAAATGTAAGGTCTGTGAAACAGAGCCAGCAACAAAGTAGTGTTCTTATTATGTTTCTTCTCAGAATTCTCTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR GCA 90 bp GTTGCTGGCTCTGTTTCACAGACCTTACATTTTCAGTTCTCATTCTaGTACAATAAAAGGAAGTCAGCTGATTTAAATAACATTACACAA +
Preference number: 1 (lower is better)
Translates to: VAGSVSQTLHFQFSF*YNKRKSADLNNITQ
Trigger: TTGTGTAATGTTATTTAAATCAGCTGACTTCCTTTTATTGTAGCAGAATGAGAACTGAAAATGTAAGGTCTGTGAAACAGAGCCAGCAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR CCA 90 bp GCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGGCATGGTGACCCATGCCTaGAATTTCAGTATGTGGGAG +
Preference number: 2 (lower is better)
Translates to: AGRLGMWPSGYMCLACKGMVTHA*NFSMWE
Trigger: CTCCCACATACTGAAATTCCAGGCATGGGTCACCAT...GCCTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR TCA 90 bp GCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGCTAAGGGCAATCTCTTaGACTCAAATGCGAACCTTC +
Preference number: 2 (lower is better)
Translates to: ALAGWGCGLVGTCAWHAKLRAIS*TQMRTF
Trigger: GAAGGTTCGCATTTGAGTTCAAGAGATTGCCCTTAG...CTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR CCA 90 bp GGCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGTATTAAAATACCAGTaGTTCCTGTATCAGGGCGAA +
Preference number: 2 (lower is better)
Translates to: GAGRLGMWPSGYMCLACKVLKYQ*FLYQGE
Trigger: TTCGCCCTGATACAGGAACCACTGGTATTTTAATAC...TTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR CCA 90 bp TCTAGCAAGATAGGCAGAGAGACCCTGAGTTTACTCCCCAGAACAAGTAGAGAAGGCAGGCTGGGGATGTaGCCTAGTGGGTACATGTGC +
Preference number: 2 (lower is better)
Translates to: SSKIGRETLSLLPRTSREGRLGM*PSGYMC
Trigger: GCACATGTACCCACTAGGCCACATCCCCAGCCTGCC...TTCTCTACTTGTTCTGGGGAGTAAACTCAGGGTCTCTCTGCCTATCTTGCTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR TCA 90 bp CGCTTATCTAGCAAGATAGGCAGAGAGACCCTGAGTTTACTCCCCAGAACAAGTTTGGAGCAGGCATGGTaGCCCATGCCTGGAATTTCA +
Preference number: 2 (lower is better)
Translates to: RLSSKIGRETLSLLPRTSLEQAW*PMPGIS
Trigger: TGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAA...ACTTGTTCTGGGGAGTAAACTCAGGGTCTCTCTGCCTATCTTGCTAGATAAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR TCA 90 bp CAAAGAGAGTTAGAAAGAAAGAGCGCAAGGAAGGAAGTGCTTCTCAAACCACTAAAAGGAAGAGGCCAGTaGCATAGCTCAGTGGCATGG +
Preference number: 2 (lower is better)
Translates to: QRELERKSARKEVLLKPLKGRGQ*HSSVAW
Trigger: CCATGCCACTGAGCTATGTCACTGGCCTCTTCCTTT...TAGTGGTTTGAGAAGCACTTCCTTCCTTGCGCTCTTTCTTTCTAACTCTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CAA 90 bp CCCACTGGAGAGAATTCTGAGAAGAAACATAATAAGAACACTACTTaGTTGCTGGCTCTGTTTCACAGACCTTACATTTTCAGTTCTCAT +
Preference number: 2 (lower is better)
Translates to: PTGENSEKKHNKNTT*LLALFHRPYIFSSH
Trigger: ATGAGAACTGAAAATGTAAGGTCTGTGAAACAGAGCCAGCAACAAAGTAGTGTTCTTATTATGTTTCTTCTCAGAATTCTCTCCAGTGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CAA 90 bp ACTGGAGAGAATTCTGAGAAGAAACATAATAAGAACACTACTTTGTaGCTGGCTCTGTTTCACAGACCTTACATTTTCAGTTCTCATTCT +
Preference number: 2 (lower is better)
Translates to: TGENSEKKHNKNTTL*LALFHRPYIFSSHS
Trigger: AGAATGAGAACTGAAAATGTAAGGTCTGTGAAACAGAGCCAGCAACAAAGTAGTGTTCTTATTATGTTTCTTCTCAGAATTCTCTCCAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CAA 90 bp TTAAAAATCACATCAGTTCTACAAATAACTACCTCTAGAGAAGGCTaGATGCTTCTACTCCATGGGTCATGCTTACAACAAAAAGTGTTC +
Preference number: 2 (lower is better)
Translates to: LKITSVLQITTSREG*MLLLHGSCLQQKVF
Trigger: GAACACTTTTTGTTGTAAGCATGACCCATGGAGTAGAAGCATCAAGCCTTCTCTAGAGGTAGTTATTTGTAGAACTGATGTGATTTTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR GCA 72 bp CTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATaGAAAGGCCCTGGGTTCGATTCCAGCCCCTCCCCC +
Preference number: 3 (lower is better)
Translates to: LGMWPSGYMCLA*KGPGFDSSPSP
Trigger: GGGGGAGGGGCTGGAATCGAACCCAGGGCCTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR GCA 72 bp GCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTaGTTGGCATGCAAAGGCCCTGGGTTCGATTCCAGC +
Preference number: 3 (lower is better)
Translates to: AGRLGMWPSGYM*LACKGPGFDSS
Trigger: GCTGGAATCGAACCCAGGGCCTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR-3UTR CAA 90 bp GGCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGCAGAGACAAGAGGATaGCCTCTCTACAAAGAGGAG +
Preference number: 3 (lower is better)
Translates to: GAGRLGMWPSGYMCLACKAETRG*PLYKEE
Trigger: CTCCTCTTTGTAGAGAGGCAATCCTCTTGTCTCTGC...TTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 72 bp ATCCTAAGAAAGGAAGAGGCCAGTGACATAGCTCAGTaGCATGGCGCTGGCAGGCTGGGGATGTGGCCTAGT +
Preference number: 3 (lower is better)
Translates to: ILRKEEASDIAQ*HGAGRLGMWPS
Trigger: ACTAGGCCACATCCCCAGCCTGCCAGCGCCATGCCACTGAGCTATGTCACTGGCCTCTTCCTTTCTTAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 72 bp GGATTGCCTCTCTACAAAGAGGAGGTCTCTCCACAGTaGGGTCCAAGCCAGCCAGGGCAACATACAGAGATC +
Preference number: 3 (lower is better)
Translates to: GLPLYKEEVSPQ*GPSQPGQHTEI
Trigger: GATCTCTGTATGTTGCCCTGGCTGGCTTGGACCTCACTGTGGAGAGACCTCCTCTTTGTAGAGAGGCAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 72 bp GCAGGCATGGTGACCCATGCCTGGAATTTCAGTATGTaGGAGGCAGAGACAAGAGGATTGCCTCTCTACAAA +
Preference number: 3 (lower is better)
Translates to: AGMVTHAWNFSM*EAETRGLPLYK
Trigger: TTTGTAGAGAGGCAATCCTCTTGTCTCTGCCTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR GCA 72 bp GGAATTTCAGTATGTGGGAGGCAGAGACAAGAGGATTaGCTCTCTACAAAGAGGAGGTCTCTCCACAGTGAG +
Preference number: 3 (lower is better)
Translates to: GISVCGRQRQED*LSTKRRSLHSE
Trigger: CTCACTGTGGAGAGACCTCCTCTTTGTAGAGAGGCAATCCTCTTGTCTCTGCCTCCCACATACTGAAATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 72 bp CAACTGGGGATATACCTCAGTGTACAGCTGACTTTCTaGTGGGATCTCATCATGCCTGCCATGTACAACGTC +
Preference number: 3 (lower is better)
Translates to: QLGIYLSVQLTF*WDLIMPAMYNV
Trigger: GACGTTGTACATGGCAGGCATGATGAGATCCCATCAGAAAGTCAGCTGTACACTGAGGTATATCCCCAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 72 bp AGGAAGGACAACTGGGGATATACCTCAGTGTACAGCTaGCTTTCTGATGGGATCTCATCATGCCTGCCATGT +
Preference number: 3 (lower is better)
Translates to: RKDNWGYTSVYS*LSDGISSCLPC
Trigger: ACATGGCAGGCATGATGAGATCCCATCAGAAAGTCAGCTGTACACTGAGGTATATCCCCAGTTGTCCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR GCA 72 bp GTGGACCATTGGCAGTGTGCGATTACACAATCAGCATaGATGAATGTGATCCCCAGCACCATCCTAAGAAAG +
Preference number: 3 (lower is better)
Translates to: VDHWQCAITQSA*MNVIPSTILRK
Trigger: CTTTCTTAGGATGGTGCTGGGGATCACATTCATGCATGCTGATTGTGTAATCGCACACTGCCAATGGTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR TCA 72 bp CGTTTGCCATTAATAAATATGTTGGAGCAGGCATGGTaGCCCATGCCTGGAATTTCAGTATGTGGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: RLPLINMLEQAW*PMPGISVCGRQ
Trigger: CTGCCTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAACATATTTATTAATGGCAAACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 72 bp AATAAATATGTTGGAGCAGGCATGGTGACCCATGCCTaGAATTTCAGTATGTGGGAGGCAGAGACAAGAGGA +
Preference number: 3 (lower is better)
Translates to: NKYVGAGMVTHA*NFSMWEAETRG
Trigger: TCCTCTTGTCTCTGCCTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAACATATTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 72 bp AGGGCAAAGATATTTAATCTTTATCATAACTGCCTCTaGGAAACGCAGTGGCATGATAATCAAAGTTCATGG +
Preference number: 3 (lower is better)
Translates to: RAKIFNLYHNCL*ETQWHDNQSSW
Trigger: CCATGAACTTTGATTATCATGCCACTGCGTTTCCCAGAGGCAGTTATGATAAAGATTAAATATCTTTGCCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CCA 72 bp CTGAGAAGAAACATAATAAGAACACTACTTTGTTGCTaGCTCTGTTTCACAGACCTTACATTTTCAGTTCTC +
Preference number: 3 (lower is better)
Translates to: LRRNIIRTLLCC*LCFTDLTFSVL
Trigger: GAGAACTGAAAATGTAAGGTCTGTGAAACAGAGCCAGCAACAAAGTAGTGTTCTTATTATGTTTCTTCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR CCA 90 bp GCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGCTGTCATGCCTGCCATaGATCCAGCCATTAATCTGT +
Preference number: 4 (lower is better)
Translates to: ALAGWGCGLVGTCAWHAKLSCLP*IQPLIC
Trigger: ACAGATTAATGGCTGGATCCATGGCAGGCATGACAG...CTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR CCA 90 bp GCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGTCAAAACTAAGACATTaGGGTTGTCGGACGAAGGTC +
Preference number: 4 (lower is better)
Translates to: ALAGWGCGLVGTCAWHAKSKLRH*GCRTKV
Trigger: GACCTTCGTCCGACAACCCCAATGTCTTAGTTTTGA...CTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR TCA 90 bp GCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAGATTAATCTGTGCACATaGCCAGAAACTCCCAGCTTT +
Preference number: 4 (lower is better)
Translates to: ALAGWGCGLVGTCAWHAKINLCT*PETPSF
Trigger: AAAGCTGGGAGTTTCTGGTCATGTGCACAGATTAAT...CTTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR CCA 90 bp TCTAGCAAGATAGGCAGAGAGACCCTGAGTTTACTCCCCAGAACAAGTAGAGAATGCTCTCCTTTCACCTaGAAGGCCAGGCGCACCCTG +
Preference number: 4 (lower is better)
Translates to: SSKIGRETLSLLPRTSRECSPFT*KARRTL
Trigger: CAGGGTGCGCCTGGCCTTCCAGGTGAAAGGAGAGCA...TTCTCTACTTGTTCTGGGGAGTAAACTCAGGGTCTCTCTGCCTATCTTGCTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR TCA 90 bp AAATATGTTGGAGCAGGCATGGTGACCCATGCCTGGAATTTCAGTATGTGGGAGAATGCTCGAAGGCCATaGACTGGATTGCACCGTAGG +
Preference number: 4 (lower is better)
Translates to: KYVGAGMVTHAWNFSMWENARRP*TGLHRR
Trigger: CCTACGGTGCAATCCAGTTCATGGCCTTCGAGCATT...CTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAACATATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR TCA 90 bp CGCTTATCTAGCAAGATAGGCAGAGAGACCCTGAGTTTACTCCCCAGAACAAGTGGCATGGATGATCCCTaGATAGGTGTGCTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: RLSSKIGRETLSLLPRTSGMDDP*IGVLSF
Trigger: AAAGGAGAGCACACCTATTCAGGGATCATCCATGCC...ACTTGTTCTGGGGAGTAAACTCAGGGTCTCTCTGCCTATCTTGCTAGATAAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR TCA 90 bp CCTGGGTTCGATTCCAGCCCCTCCCCCTCAGTAACCACAATTACAATGCAGAGTCAGAGGAGGTTTATGTaGGTTTTCAAAACTAAGACA +
Preference number: 4 (lower is better)
Translates to: PGFDSSPSPSVTTITMQSQRRFM*VFKTKT
Trigger: TGTCTTAGTTTTGAAAACTCACATAAACCTCCTCTG...ACTCTGCATTGTAATTGTGGTTACTGAGGGGGAGGGGCTGGAATCGAACCCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR GCA 90 bp AGGGCAAAGATATTTAATCTTTATCATAACTGCCTCTGGGAAACGCAGTGGCATGGCCATGAACTGGATTaGACCGTAGGGAAAGATCCG +
Preference number: 4 (lower is better)
Translates to: RAKIFNLYHNCLWETQWHGHELD*TVGKDP
Trigger: CGGATCTTTCCCTACGGTGCAATCCAGTTCATGGCC...ATGCCACTGCGTTTCCCAGAGGCAGTTATGATAAAGATTAAATATCTTTGCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR CCA 90 bp TCTAGCAAGATAGGCAGAGAGACCCTGAGTTTACTCCCCAGAACAAGTAGAGAAGAACAGCACGCAGTGTaGAAAGTACCCCTAAATGTT +
Preference number: 4 (lower is better)
Translates to: SSKIGRETLSLLPRTSREEQHAV*KVPLNV
Trigger: AACATTTAGGGGTACTTTCCACACTGCGTGCTGTTC...TTCTCTACTTGTTCTGGGGAGTAAACTCAGGGTCTCTCTGCCTATCTTGCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR GCA 90 bp AGGGCAAAGATATTTAATCTTTATCATAACTGCCTCTGGGAAACGCAGTGGCATGTAGGATATCGTCTGTaGTATTGCTCCAGCAACACC +
Preference number: 4 (lower is better)
Translates to: RAKIFNLYHNCLWETQWHVGYRL*YCSSNT
Trigger: GGTGTTGCTGGAGCAATAGCACAGACGATATCCTAC...ATGCCACTGCGTTTCCCAGAGGCAGTTATGATAAAGATTAAATATCTTTGCCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR GCA 90 bp AGGGCAAAGATATTTAATCTTTATCATAACTGCCTCTGGGAAACGCAGTGGCATGATCCGAATCATCATTaGACCGTTTCCTTTATACAG +
Preference number: 4 (lower is better)
Translates to: RAKIFNLYHNCLWETQWHDPNHH*TVSFIQ
Trigger: CTGTATAAAGGAAACGGTGCAATGATGATTCGGATC...ATGCCACTGCGTTTCCCAGAGGCAGTTATGATAAAGATTAAATATCTTTGCCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CAA 72 bp GAGTTTGGAAAGTATGGTAGGACTAAGGGCAATCTCTaGAACTCAAATGCGAACCTTCTTTTCCTTCCAAAT +
Preference number: 4 (lower is better)
Translates to: EFGKYGRTKGNL*NSNANLLFLPN
Trigger: ATTTGGAAGGAAAAGAAGGTTCGCATTTGAGTTCAAGAGATTGCCCTTAGTCCTACCATACTTTCCAAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
3UTR CAA 72 bp ACATCAGTTCTACAAATAACTACCTCTAGAGAAGGCTaGATGCTTCTACTCCATGGGTCATGCTTACAACAA +
Preference number: 4 (lower is better)
Translates to: TSVLQITTSREG*MLLLHGSCLQQ
Trigger: TTGTTGTAAGCATGACCCATGGAGTAGAAGCATCAAGCCTTCTCTAGAGGTAGTTATTTGTAGAACTGATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS TCA 90 bp AATACCTCCGGCCAAGAAGGAACGCAGCCAGTAGAAGTCTCGGCGTaGGGTCGGGCCCCCGCTCCCAGCCGCCTGCGGCACCGCGGGTGC +
Preference number: 5 (lower is better)
Translates to: NTSGQEGTQPVEVSA*GRAPAPSRLRHRGC
Trigger: GCACCCGCGGTGCCGCAGGCGGCTGGGAGCGGGGGCCCGACCTCACGCCGAGACTTCTACTGGCTGCGTTCCTTCTTGGCCGGAGGTATT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS-3UTR CAA 90 bp GGCGCTGGCAGGCTGGGGATGTGGCCTAGTGGGTACATGTGCTTGGCATGCAAAATATCGTCTGTGCTATaGCTCCAGCAACACCACCAC +
Preference number: 5 (lower is better)
Translates to: GAGRLGMWPSGYMCLACKISSVL*LQQHHH
Trigger: GTGGTGGTGTTGCTGGAGCAATAGCACAGACGATAT...TTTGCATGCCAAGCACATGTACCCACTAGGCCACATCCCCAGCCTGCCAGCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS CCA 90 bp CACCACCACAGAGGAGGTTTATGTGAGTTTTCAAAACTAAGACATTaGGGTTGTCGGACGAAGGTCGGCCAAGCAGGGCAGGAGCATAGG +
Preference number: 5 (lower is better)
Translates to: HHHRGGLCEFSKLRH*GCRTKVGQAGQEHR
Trigger: CCTATGCTCCTGCCCTGCTTGGCCGACCTTCGTCCGACAACCCCAATGTCTTAGTTTTGAAAACTCACATAAACCTCCTCTGTGGTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS-3UTR CAA 90 bp TCTAGCAAGATAGGCAGAGAGACCCTGAGTTTACTCCCCAGAACAAGTAGAGAAACTAAGACATTGGGGTaGTCGGACGAAGGTCGGCCA +
Preference number: 5 (lower is better)
Translates to: SSKIGRETLSLLPRTSRETKTLG*SDEGRP
Trigger: TGGCCGACCTTCGTCCGACAACCCCAATGTCTTAGT...TTCTCTACTTGTTCTGGGGAGTAAACTCAGGGTCTCTCTGCCTATCTTGCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS GCA 90 bp GGCCATGAACTGGATTGCACCGTAGGGAAAGATCCGAATCATCATTaGACCGTTTCCTTTATACAGTCCAAGATAGCCTTCCTTTTGGGG +
Preference number: 5 (lower is better)
Translates to: GHELDCTVGKDPNHH*TVSFIQSKIAFLLG
Trigger: CCCCAAAAGGAAGGCTATCTTGGACTGTATAAAGGAAACGGTGCAATGATGATTCGGATCTTTCCCTACGGTGCAATCCAGTTCATGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS GCA 90 bp TCTCCGTCGGGTCACATCAAATGGGTAGGATATCGTCTGTGCTATTaGTCCAGCAACACCACCACAGAGGAGGTTTATGTGAGTTTTCAA +
Preference number: 5 (lower is better)
Translates to: SPSGHIKWVGYRLCY*SSNTTTEEVYVSFQ
Trigger: TTGAAAACTCACATAAACCTCCTCTGTGGTGGTGTTGCTGGAGCAATAGCACAGACGATATCCTACCCATTTGATGTGACCCGACGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS-3UTR CAA 90 bp TCCCCAAAGAGAGTTAGAAAGAAAGAGCGCAAGGAAGGAAGTGCTTCTCAAACCTTCAAAACTAAGACATaGGGGTTGTCGGACGAAGGT +
Preference number: 5 (lower is better)
Translates to: SPKRVRKKERKEGSASQTFKTKT*GLSDEG
Trigger: ACCTTCGTCCGACAACCCCAATGTCTTAGTTTTGAA...GGTTTGAGAAGCACTTCCTTCCTTGCGCTCTTTCTTTCTAACTCTCTTTGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS-3UTR CAA 90 bp AAATATGTTGGAGCAGGCATGGTGACCCATGCCTGGAATTTCAGTATGTGGGAGAGATCCGAATCATCATaGCACCGTTTCCTTTATACA +
Preference number: 5 (lower is better)
Translates to: KYVGAGMVTHAWNFSMWERSESS*HRFLYT
Trigger: TGTATAAAGGAAACGGTGCAATGATGATTCGGATCT...CTCCCACATACTGAAATTCCAGGCATGGGTCACCATGCCTGCTCCAACATATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS GCA 90 bp TGTAGTAATGAACGTTTTATAATGCTCGAAGGCCATGAACTGGATTaGACCGTAGGGAAAGATCCGAATCATCATTGCACCGTTTCCTTT +
Preference number: 5 (lower is better)
Translates to: CSNERFIMLEGHELD*TVGKDPNHHCTVSF
Trigger: AAAGGAAACGGTGCAATGATGATTCGGATCTTTCCCTACGGTGCAATCCAGTTCATGGCCTTCGAGCATTATAAAACGTTCATTACTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS TCA 72 bp GGCCAAGAAGGAACGCAGCCAGTAGAAGTCTCGGCGTaGGGTCGGGCCCCCGCTCCCAGCCGCCTGCGGCAC +
Preference number: 6 (lower is better)
Translates to: GQEGTQPVEVSA*GRAPAPSRLRH
Trigger: GTGCCGCAGGCGGCTGGGAGCGGGGGCCCGACCTCACGCCGAGACTTCTACTGGCTGCGTTCCTTCTTGGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS GCA 72 bp CCGTCGGGTCACATCAAATGGGTAGGATATCGTCTGTaGTATTGCTCCAGCAACACCACCACAGAGGAGGTT +
Preference number: 6 (lower is better)
Translates to: PSGHIKWVGYRL*YCSSNTTTEEV
Trigger: AACCTCCTCTGTGGTGGTGTTGCTGGAGCAATAGCACAGACGATATCCTACCCATTTGATGTGACCCGACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS CAA 72 bp GGGTCACATCAAATGGGTAGGATATCGTCTGTGCTATaGCTCCAGCAACACCACCACAGAGGAGGTTTATGT +
Preference number: 6 (lower is better)
Translates to: GSHQMGRISSVL*LQQHHHRGGLC
Trigger: ACATAAACCTCCTCTGTGGTGGTGTTGCTGGAGCAATAGCACAGACGATATCCTACCCATTTGATGTGACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS TCA 72 bp ATGCCTGCCATGGATCCAGCCATTAATCTGTGCACATaGCCAGAAACTCCCAGCTTTGTAGTAATGAACGTT +
Preference number: 6 (lower is better)
Translates to: MPAMDPAINLCT*PETPSFVVMNV
Trigger: AACGTTCATTACTACAAAGCTGGGAGTTTCTGGTCATGTGCACAGATTAATGGCTGGATCCATGGCAGGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044977.10
CDS GCA 72 bp CTGGATTGCACCGTAGGGAAAGATCCGAATCATCATTaGACCGTTTCCTTTATACAGTCCAAGATAGCCTTC +
Preference number: 6 (lower is better)
Translates to: LDCTVGKDPNHH*TVSFIQSKIAF
Trigger: GAAGGCTATCTTGGACTGTATAAAGGAAACGGTGCAATGATGATTCGGATCTTTCCCTACGGTGCAATCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS GCA 72 bp GAACGTTTTATAATGCTCGAAGGCCATGAACTGGATTaGACCGTAGGGAAAGATCCGAATCATCATTGCACC +
Preference number: 6 (lower is better)
Translates to: ERFIMLEGHELD*TVGKDPNHHCT
Trigger: GGTGCAATGATGATTCGGATCTTTCCCTACGGTGCAATCCAGTTCATGGCCTTCGAGCATTATAAAACGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2
CDS TCA 72 bp TTACCTGCCATGGATCCAGCCATTAATCTGTGCACATaGCCAGAAACTCCCAGCTTTGTAGTAATGAACGTT +
Preference number: 6 (lower is better)
Translates to: LPAMDPAINLCT*PETPSFVVMNV
Trigger: AACGTTCATTACTACAAAGCTGGGAGTTTCTGGTCATGTGCACAGATTAATGGCTGGATCCATGGCAGGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144459.2
CDS CAA 72 bp ACTGGATTGCACCGTAGGGAAAGATCCGAATCATCATaGCACCGTTTCCTTTATACAGTCCAAGATAGCCTT +
Preference number: 6 (lower is better)
Translates to: TGLHRRERSESS*HRFLYTVQDSL
Trigger: AAGGCTATCTTGGACTGTATAAAGGAAACGGTGCAATGATGATTCGGATCTTTCCCTACGGTGCAATCCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044977.10
ENSMUST00000144459.2