RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC24A5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035183

Ensembl transcript IDs: ENSMUST00000070353.4

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAGAATTTTCTTCTTTTTaGCCCTCTACCATTCCATCT +
Preference number: 2 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLEFSSF*PSTIPS
Trigger: AGATGGAATGGTAGAGGGGCAAAAAGAAGAAAATTC...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAAGTTTCCTGTGGCCCTTaGGAGGCGCGGGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKVSCGP*EARGQG
Trigger: TCCCTGCCCCCGCGCCTCCCAAGGGCCACAGGAAAC...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAGGAGAGACAGCACATTaGGTGCTGTTTCCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLGETAH*VLFPVA
Trigger: GGCCACAGGAAACAGCACGCAATGTGCTGTCTCTCC...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp TTTGTTATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTACTTGTCGCAGACGATaGAGATGGCCATGCACATGT +
Preference number: 4 (lower is better)
Translates to: FVIFSSRVCLFQFSRPWCTCRRR*RWPCTC
Trigger: ACATGTGCATGGCCATCTCCATCGTCTGCGACAAGT...ACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR TCA 90 bp TTTGTTATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTCTGCTTCTGGCATGCTaGAAACACTTGGTGGATCTT +
Preference number: 4 (lower is better)
Translates to: FVIFSSRVCLFQFSRPWCLLLAC*KHLVDL
Trigger: AAGATCCACCAAGTGTTTTCAGCATGCCAGAAGCAG...ACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAAGCACCTGCAACATCCTaGGACAGTCCAAGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKAPATS*DSPRES
Trigger: TGACTCCCTTGGACTGTCGCAGGATGTTGCAGGTGC...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp TTTGTTATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTTGCTCCTACACTAACTaGATACACTGCACAGTCTCG +
Preference number: 4 (lower is better)
Translates to: FVIFSSRVCLFQFSRPWCCSYTN*IHCTVS
Trigger: CGAGACTGTGCAGTGTATGCAGTTAGTGTAGGAGCA...ACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAGGGAAACTCCGATGCTaGAGAGACAGCACATTGCGT +
Preference number: 4 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLGKLRC*RDSTLR
Trigger: ACGCAATGTGCTGTCTCTCCAGCATCGGAGTTTCCC...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACGACGAATGAAGAGCTaGCTCTCATCCTCCCATCCC +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKRRMKS*LSSSHP
Trigger: GGGATGGGAGGATGAGAGCCAGCTCTTCATTCGTCG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR TCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACCAGCAGGAGAGTGTTaGAACCATGTTGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKPAGEC*NHVGQE
Trigger: CTCCTGTCCAACATGGTTTCAACACTCTCCTGCTGG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAAACGGACAGGCAGGTATaGAGAGACCCAAAAGATCCC +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKTDRQV*RDPKDP
Trigger: GGGATCTTTTGGGTCTCTGCATACCTGCCTGTCCGT...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAAGCTGCCATGAAAGTTaGACCTGCAACATCCTGCGA +
Preference number: 4 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLSCHES*TCNILR
Trigger: TCGCAGGATGTTGCAGGTGCAACTTTCATGGCAGCT...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTATGGTATGCTTGTCCCTaGTGCCAACAAAGTAAGGCC +
Preference number: 4 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLWYACP*CQQSKA
Trigger: GGCCTTACTTTGTTGGCAGCAGGGACAAGCATACCA...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACCTCCTTGTCCAAGTTaGGCCCCATTTTGTCCGCAT +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKPPCPS*APFCPH
Trigger: ATGCGGACAAAATGGGGCCCAACTTGGACAAGGAGG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACGCAGACGATGGAGATaGCCATGCACATGTAGAGGA +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKRRRWR*PCTCRG
Trigger: TCCTCTACATGTGCATGGCCATCTCCATCGTCTGCG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAATTCGGGAAACTCCGATaGTGGAGAGACAGCACATTG +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKFGKLR*WRDSTL
Trigger: CAATGTGCTGTCTCTCCAGCATCGGAGTTTCCCGAA...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACATGAAAGTTGCACCTaGAACATCCTGCGACAGTCC +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKHESCT*NILRQS
Trigger: GGACTGTCGCAGGATGTTGCAGGTGCAACTTTCATG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACGCAGGCAGCACAGATaGCGAGGAGATTATAAATTG +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKRRQHR*RGDYKL
Trigger: CAATTTATAATCTCCTCGGCATCTGTGCTGCCTGCG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTATCCAAAACTTTCTCCTaGAGTCTGGTGTTGTCAGAG +
Preference number: 4 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLSKTFS*SLVLSE
Trigger: CTCTGACAACACCAGACTGCAGGAGAAAGTTTTGGA...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR TCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAATTTCCCCTGTTACTGTaGCCATCCAAACTAGGATGT +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKFPLLL*PSKLGC
Trigger: ACATCCTAGTTTGGATGGTCACAGTAACAGGGGAAA...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR GCA 90 bp TTTGTTATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAGATGCATTCGTAAATaGAGTCTTAATAAACCAGGG +
Preference number: 4 (lower is better)
Translates to: FVIFSSRVCLFQFSRPWCRCIRK*SLNKPG
Trigger: CCCTGGTTTATTAAGACTGCATTTACGAATGCATCT...ACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTACATGCTGAAAACACTTaGTGGATCTTCAGAAACCTG +
Preference number: 4 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLHAENT*WIFRNL
Trigger: CAGGTTTCTGAAGATCCACCAAGTGTTTTCAGCATG...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR TCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAAATCCTAGTATGGTGCTaGTACCAATATCTCCCTTTG +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKILVWC*YQYLPL
Trigger: CAAAGGGAGATATTGGTATCAGCACCATACTAGGAT...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CCA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAAGCTGAAAACACTTGGTaGATCTTCAGAAACCTGACT +
Preference number: 4 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKAENTW*IFRNLT
Trigger: AGTCAGGTTTCTGAAGATCCACCAAGTGTTTTCAGC...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 90 bp CGATGCTGGAGAGACAGCACATTGCGTGCTGTTTCCTGTGGCCCTTaGGAGGCGCGGGGGCAGGGAGACACCACGGACAGGCAGGTATGC +
Preference number: 5 (lower is better)
Translates to: RCWRDSTLRAVSCGP*EARGQGDTTDRQVC
Trigger: GCATACCTGCCTGTCCGTGGTGTCTCCCTGCCCCCGCGCCTCCCAAGGGCCACAGGAAACAGCACGCAATGTGCTGTCTCTCCAGCATCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 90 bp TGCATACACTGCACAGTCTCGGAAGAGGGGCCAGCAGGAGAGTGTTaGAACCATGTTGGACAGGAGGCCGCAGGCAGCACAGATGCCGAG +
Preference number: 5 (lower is better)
Translates to: CIHCTVSEEGPAGEC*NHVGQEAAGSTDAE
Trigger: CTCGGCATCTGTGCTGCCTGCGGCCTCCTGTCCAACATGGTTTCAACACTCTCCTGCTGGCCCCTCTTCCGAGACTGTGCAGTGTATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 90 bp CGTGCTCTCCTGCTTGGTGAAGAACCCTTCGGGAAACTCCGATGCTaGAGAGACAGCACATTGCGTGCTGTTTCCTGTGGCCCTTGGGAG +
Preference number: 5 (lower is better)
Translates to: RALLLGEEPFGKLRC*RDSTLRAVSCGPWE
Trigger: CTCCCAAGGGCCACAGGAAACAGCACGCAATGTGCTGTCTCTCCAGCATCGGAGTTTCCCGAAGGGTTCTTCACCAAGCAGGAGAGCACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 90 bp CACAGTCTCGGAAGAGGGGCCAGCAGGAGAGTGTTGAAACCATGTTaGACAGGAGGCCGCAGGCAGCACAGATGCCGAGGAGATTATAAA +
Preference number: 5 (lower is better)
Translates to: HSLGRGASRRVLKPC*TGGRRQHRCRGDYK
Trigger: TTTATAATCTCCTCGGCATCTGTGCTGCCTGCGGCCTCCTGTCCAACATGGTTTCAACACTCTCCTGCTGGCCCCTCTTCCGAGACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 90 bp CGACGAATGAAGAGCTGGCTCTCATCCTCCCATCCCAACAGTGTCTaGTGTTCAATTCTCTCCTCCATAGCTCTGGCAAGGCAGGGACAA +
Preference number: 5 (lower is better)
Translates to: RRMKSWLSSSHPNSV*CSILSSIALARQGQ
Trigger: TTGTCCCTGCCTTGCCAGAGCTATGGAGGAGAGAATTGAACAGCAGACACTGTTGGGATGGGAGGATGAGAGCCAGCTCTTCATTCGTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 90 bp TTGGGAGTAACCGGAATCTTCCTGAAATATTCCACTGTCTGTCCTTaGCTGGCGACGAATGAAGAGCTGGCTCTCATCCTCCCATCCCAA +
Preference number: 5 (lower is better)
Translates to: LGVTGIFLKYSTVCP*LATNEELALILPSQ
Trigger: TTGGGATGGGAGGATGAGAGCCAGCTCTTCATTCGTCGCCAGTCAAGGACAGACAGTGGAATATTTCAGGAAGATTCCGGTTACTCCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 90 bp AATCTTCCTGAAATATTCCACTGTCTGTCCTTGACTGGCGACGAATaGAGAGCTGGCTCTCATCCTCCCATCCCAACAGTGTCTGCTGTT +
Preference number: 5 (lower is better)
Translates to: NLPEIFHCLSLTGDE*RAGSHPPIPTVSAV
Trigger: AACAGCAGACACTGTTGGGATGGGAGGATGAGAGCCAGCTCTTCATTCGTCGCCAGTCAAGGACAGACAGTGGAATATTTCAGGAAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CAA 90 bp TTTGTTATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTGCAGCAGGACCCTCCTaGTCCAAGTTGGGCCCCATT +
Preference number: 5 (lower is better)
Translates to: FVIFSSRVCLFQFSRPWCAAGPS*SKLGPI
Trigger: AATGGGGCCCAACTTGGACAAGGAGGGTCCTGCTGC...ACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 90 bp AATTCGGTTGTCAAATATTATGCCAAAAACTGCTCCTACACTAACTaGATACACTGCACAGTCTCGGAAGAGGGGCCAGCAGGAGAGTGT +
Preference number: 5 (lower is better)
Translates to: NSVVKYYAKNCSYTN*IHCTVSEEGPAGEC
Trigger: ACACTCTCCTGCTGGCCCCTCTTCCGAGACTGTGCAGTGTATGCAGTTAGTGTAGGAGCAGTTTTTGGCATAATATTTGACAACCGAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 90 bp TCCTTCGTACCAGTAAATTCGGTTGTCAAATATTATGCCAAAAACTaGTCCTACACTAACTGCATACACTGCACAGTCTCGGAAGAGGGG +
Preference number: 5 (lower is better)
Translates to: SFVPVNSVVKYYAKN*SYTNCIHCTVSEEG
Trigger: CCCCTCTTCCGAGACTGTGCAGTGTATGCAGTTAGTGTAGGAGCAGTTTTTGGCATAATATTTGACAACCGAATTTACTGGTACGAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CAA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAATGGAGAGACAGCACATaGCGTGCTGTTTCCTGTGGC +
Preference number: 5 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKWRDST*RAVSCG
Trigger: GCCACAGGAAACAGCACGCAATGTGCTGTCTCTCCA...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CAA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAGCCAGCAGGAGAGTGTaGAAACCATGTTGGACAGGA +
Preference number: 5 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLASRRV*KPCWTG
Trigger: TCCTGTCCAACATGGTTTCAACACTCTCCTGCTGGC...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CAA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAACTGTATCTGGTATGCTaGTCCCTGCTGCCAACAAAG +
Preference number: 5 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKLYLVC*SLLPTK
Trigger: CTTTGTTGGCAGCAGGGACAAGCATACCAGATACAG...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CAA 90 bp ACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATGAAAAGCATATCAAACACATaGGATCCCACGATGTTAGAT +
Preference number: 5 (lower is better)
Translates to: TAHLIIQFQWMDIPFLMKSISNT*DPTMLD
Trigger: ATCTAACATCGTGGGATCCAATGTGTTTGATATGCT...TTTCATTAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS-3UTR CAA 90 bp CTAAAGACAGCACATCTGATCATTCAGTTTCAGTGGATGGACATACCATTTTTAATATATGTGAGTCCCTaGCTATTCACTTCTATAGGA +
Preference number: 5 (lower is better)
Translates to: LKTAHLIIQFQWMDIPFLIYVSP*LFTSIG
Trigger: TCCTATAGAAGTGAATAGCAAGGGACTCACATATAT...TAAAAATGGTATGTCCATCCACTGAAACTGAATGATCAGATGTGCTGTCTTTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 72 bp AGAGACAGCACATTGCGTGCTGTTTCCTGTGGCCCTTaGGAGGCGCGGGGGCAGGGAGACACCACGGACAGG +
Preference number: 6 (lower is better)
Translates to: RDSTLRAVSCGP*EARGQGDTTDR
Trigger: CCTGTCCGTGGTGTCTCCCTGCCCCCGCGCCTCCCAAGGGCCACAGGAAACAGCACGCAATGTGCTGTCTCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CAA 72 bp CCCTTCGGGAAACTCCGATGCTGGAGAGACAGCACATaGCGTGCTGTTTCCTGTGGCCCTTGGGAGGCGCGG +
Preference number: 6 (lower is better)
Translates to: PFGKLRCWRDST*RAVSCGPWEAR
Trigger: CCGCGCCTCCCAAGGGCCACAGGAAACAGCACGCAATGTGCTGTCTCTCCAGCATCGGAGTTTCCCGAAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 72 bp GGAAGAGGGGCCAGCAGGAGAGTGTTGAAACCATGTTaGACAGGAGGCCGCAGGCAGCACAGATGCCGAGGA +
Preference number: 6 (lower is better)
Translates to: GRGASRRVLKPC*TGGRRQHRCRG
Trigger: TCCTCGGCATCTGTGCTGCCTGCGGCCTCCTGTCCAACATGGTTTCAACACTCTCCTGCTGGCCCCTCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 72 bp TGCACAGTCTCGGAAGAGGGGCCAGCAGGAGAGTGTTaGAACCATGTTGGACAGGAGGCCGCAGGCAGCACA +
Preference number: 6 (lower is better)
Translates to: CTVSEEGPAGEC*NHVGQEAAGST
Trigger: TGTGCTGCCTGCGGCCTCCTGTCCAACATGGTTTCAACACTCTCCTGCTGGCCCCTCTTCCGAGACTGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CAA 90 bp CTGCATACACTGCACAGTCTCGGAAGAGGGGCCAGCAGGAGAGTGTaGAAACCATGTTGGACAGGAGGCCGCAGGCAGCACAGATGCCGA +
Preference number: 6 (lower is better)
Translates to: LHTLHSLGRGASRRV*KPCWTGGRRQHRCR
Trigger: TCGGCATCTGTGCTGCCTGCGGCCTCCTGTCCAACATGGTTTCAACACTCTCCTGCTGGCCCCTCTTCCGAGACTGTGCAGTGTATGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp AGGGGCGGAGCTACCAGCTGCCATGAAAGTTGCACCTaGAACATCCTGCGACAGTCCAAGGGAGTCACTGAT +
Preference number: 6 (lower is better)
Translates to: RGGATSCHESCT*NILRQSKGVTD
Trigger: ATCAGTGACTCCCTTGGACTGTCGCAGGATGTTGCAGGTGCAACTTTCATGGCAGCTGGTAGCTCCGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 72 bp CTGCTTGGTGAAGAACCCTTCGGGAAACTCCGATGCTaGAGAGACAGCACATTGCGTGCTGTTTCCTGTGGC +
Preference number: 6 (lower is better)
Translates to: LLGEEPFGKLRC*RDSTLRAVSCG
Trigger: GCCACAGGAAACAGCACGCAATGTGCTGTCTCTCCAGCATCGGAGTTTCCCGAAGGGTTCTTCACCAAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CCA 72 bp CCACTGTCTGTCCTTGACTGGCGACGAATGAAGAGCTaGCTCTCATCCTCCCATCCCAACAGTGTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: PLSVLDWRRMKS*LSSSHPNSVCC
Trigger: ACAGCAGACACTGTTGGGATGGGAGGATGAGAGCCAGCTCTTCATTCGTCGCCAGTCAAGGACAGACAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 72 bp AGATTACGATACCTCCATCCGTGCTCTCCTGCTTGGTaGAGAACCCTTCGGGAAACTCCGATGCTGGAGAGA +
Preference number: 6 (lower is better)
Translates to: RLRYLHPCSPAW*RTLRETPMLER
Trigger: TCTCTCCAGCATCGGAGTTTCCCGAAGGGTTCTTCACCAAGCAGGAGAGCACGGATGGAGGTATCGTAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp AGGCAGGGACAACAGGGACTGCATGTTTTCATGACATaGCGGCTGATCGTGGTGTCAAAACACAGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: RQGQQGLHVFMT*RLIVVSKHSSR
Trigger: TCTGCTGCTGTGTTTTGACACCACGATCAGCCGGCATGTCATGAAAACATGCAGTCCCTGTTGTCCCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp AAGAGCTGGCTCTCATCCTCCCATCCCAACAGTGTCTaGTGTTCAATTCTCTCCTCCATAGCTCTGGCAAGG +
Preference number: 6 (lower is better)
Translates to: KSWLSSSHPNSV*CSILSSIALAR
Trigger: CCTTGCCAGAGCTATGGAGGAGAGAATTGAACAGCAGACACTGTTGGGATGGGAGGATGAGAGCCAGCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 72 bp GAAATATTCCACTGTCTGTCCTTGACTGGCGACGAATaGAGAGCTGGCTCTCATCCTCCCATCCCAACAGTG +
Preference number: 6 (lower is better)
Translates to: EIFHCLSLTGDE*RAGSHPPIPTV
Trigger: CACTGTTGGGATGGGAGGATGAGAGCCAGCTCTTCATTCGTCGCCAGTCAAGGACAGACAGTGGAATATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS TCA 72 bp ACCGGAATCTTCCTGAAATATTCCACTGTCTGTCCTTaGCTGGCGACGAATGAAGAGCTGGCTCTCATCCTC +
Preference number: 6 (lower is better)
Translates to: TGIFLKYSTVCP*LATNEELALIL
Trigger: GAGGATGAGAGCCAGCTCTTCATTCGTCGCCAGTCAAGGACAGACAGTGGAATATTTCAGGAAGATTCCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp AAACCATGTTGGACAGGAGGCCGCAGGCAGCACAGATaGCGAGGAGATTATAAATTGCAGATCCTAGTATGG +
Preference number: 6 (lower is better)
Translates to: KPCWTGGRRQHR*RGDYKLQILVW
Trigger: CCATACTAGGATCTGCAATTTATAATCTCCTCGGCATCTGTGCTGCCTGCGGCCTCCTGTCCAACATGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp GTCAAATATTATGCCAAAAACTGCTCCTACACTAACTaGATACACTGCACAGTCTCGGAAGAGGGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: VKYYAKNCSYTN*IHCTVSEEGPA
Trigger: TGCTGGCCCCTCTTCCGAGACTGTGCAGTGTATGCAGTTAGTGTAGGAGCAGTTTTTGGCATAATATTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CAA 72 bp AACCAGGGAAGACCTAGGCATAGCATATCAAACACATaGGATCCCACGATGTTAGATATAGCCATGTCTCCT +
Preference number: 6 (lower is better)
Translates to: NQGRPRHSISNT*DPTMLDIAMSP
Trigger: AGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCTATGCCTAGGTCTTCCCTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp CCAGTAAATTCGGTTGTCAAATATTATGCCAAAAACTaGTCCTACACTAACTGCATACACTGCACAGTCTCG +
Preference number: 6 (lower is better)
Translates to: PVNSVVKYYAKN*SYTNCIHCTVS
Trigger: CGAGACTGTGCAGTGTATGCAGTTAGTGTAGGAGCAGTTTTTGGCATAATATTTGACAACCGAATTTACTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS GCA 72 bp TGTGAGTCCCTTGCTATTCACTTCTATAGGAGCAGATaGATTCGTAAATGCAGTCTTAATAAACCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: CESLAIHFYRSR*IRKCSLNKPGK
Trigger: CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGAATAGCAAGGGACTCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4
CDS CAA 90 bp GTCTTAATAAACCAGGGAAGACCTAGGCATAGCATATCAAACACATaGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTTTT +
Preference number: 6 (lower is better)
Translates to: VLINQGRPRHSISNT*DPTMLDIAMSPLPF
Trigger: AAAAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCTATGCCTAGGTCTTCCCTGGTTTATTAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070353.4