RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC24A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037996

Ensembl transcript IDs: ENSMUST00000044990.11, ENSMUST00000107155.8, ENSMUST00000107157.9, ENSMUST00000107158.9, ENSMUST00000146815.2

Found 448 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTaGACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCA +
Preference number: 1 (lower is better)
Translates to: PSSNLPRRDTCLPGL*TSCLFSRLQGAWSP
Trigger: TGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp CCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTaGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGA +
Preference number: 1 (lower is better)
Translates to: PGLCTSCLFSRLQGA*SPEPGGTIHAVGLR
Trigger: TCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp TCCGACCAGCGAGGAGTACCTGTCAGTGGTGATGGAGGTCCTCTTTaGCTCTTACACGGAGTCATTTCATCAGGCAAGGGCGAGGTGCCT +
Preference number: 1 (lower is better)
Translates to: SDQRGVPVSGDGGPL*LLHGVISSGKGEVP
Trigger: AGGCACCTCGCCCTTGCCTGATGAAATGACTCCGTGTAAGAGGCAAAGAGGACCTCCATCACCACTGACAGGTACTCCTCGCTGGTCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp CCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTaGCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAA +
Preference number: 1 (lower is better)
Translates to: PMGIHPSSNLPRRDT*LPGLCTSCLFSRLQ
Trigger: TTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp GCCTCTTACACGGAGTCATTTCATCAGGCAAGGGCGAGGTGCCTGTaGAGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCC +
Preference number: 1 (lower is better)
Translates to: ASYTESFHQARARCL*SECPHGNPSFLQPS
Trigger: GGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACTTCACAGGCACCTCGCCCTTGCCTGATGAAATGACTCCGTGTAAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp GAACTCCTAGCTCTGAGGCCCCTGGAGTGCTTCCTGGCTTCCTGGTaGGGAGGGGACAGTAATGATGGGAGAAGACATTCTCTGACCTTT +
Preference number: 1 (lower is better)
Translates to: ELLALRPLECFLASW*GGDSNDGRRHSLTF
Trigger: AAAGGTCAGAGAATGTCTTCTCCCATCATTACTGTCCCCTCCTCACCAGGAAGCCAGGAAGCACTCCAGGGGCCTCAGAGCTAGGAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp ACTCTGCCGAATTCAACAGAAGCTCTGATGGACGGTCTGACTTTTTaGGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCAC +
Preference number: 1 (lower is better)
Translates to: TLPNSTEALMDGLTF*GPWASTQPVIEECH
Trigger: GTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAAAAAGTCAGACCGTCCATCAGAGCTTCTGTTGAATTCGGCAGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp TCAGTGGTCCTTTGTACTTTAGCAACCAGCAACAGATTCTCCCAGTaGAATCAGTCTCTGGTGGGAGCCCATGCAAGTCCACAGCATTCC +
Preference number: 1 (lower is better)
Translates to: SVVLCTLATSNRFSQ*NQSLVGAHASPQHS
Trigger: GGAATGCTGTGGACTTGCATGGGCTCCCACCAGAGACTGATTCCACTGGGAGAATCTGTTGCTGGTTGCTAAAGTACAAAGGACCACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp GACAGTGGAACATGGAAGGAAACCCTTTACCAGAGTGAGACCACGTaGCCCAAGCACACCACTCCAAACAGCCTATGTACAGTTTGCCAT +
Preference number: 1 (lower is better)
Translates to: DSGTWKETLYQSETT*PKHTTPNSLCTVCH
Trigger: ATGGCAAACTGTACATAGGCTGTTTGGAGTGGTGTGCTTGGGTCACGTGGTCTCACTCTGGTAAAGGGTTTCCTTCCATGTTCCACTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp TCCAATCCTCCTGCCTCTACTTCCTCACTTCTCGGATTGCAGGTGTaGCATTATGCCTGGTTTGCGAGTCATATATGTTTTCATGCACCT +
Preference number: 1 (lower is better)
Translates to: SNPPASTSSLLGLQV*HYAWFASHICFHAP
Trigger: AGGTGCATGAAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTAGAGGCAGGAGGATTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp CAGGATCTTCCAATCCTCCTGCCTCTACTTCCTCACTTCTCGGATTaGAGGTGTGCCATTATGCCTGGTTTGCGAGTCATATATGTTTTC +
Preference number: 1 (lower is better)
Translates to: QDLPILLPLLPHFSD*RCAIMPGLRVIYVF
Trigger: GAAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTAGAGGCAGGAGGATTGGAAGATCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp CTTACTTCATCTCAAGTCACAGAGGCATTTAAAAGATGTGGGAATTaGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGA +
Preference number: 1 (lower is better)
Translates to: LTSSQVTEAFKRCGN*RCRGVGQLSLVRSR
Trigger: TCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATTCCCACATCTTTTAAATGCCTCTGTGACTTGAGATGAAGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp ACTGTCTCCACTGTGCTTGGAATGCTAAAGTTCCAGATGGGGTTATaGTGGGAGGCAGGATACAGATGTTGTACGGATCTACAGACCAAA +
Preference number: 1 (lower is better)
Translates to: TVSTVLGMLKFQMGL*WEAGYRCCTDLQTK
Trigger: TTTGGTCTGTAGATCCGTACAACATCTGTATCCTGCCTCCCATCATAACCCCATCTGGAACTTTAGCATTCCAAGCACAGTGGAGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp CTTTGGTCAGTGTGCATGAGTTTCCTCTTCCTTGACTGTCAAATCTaGTGCTCTTTGCTTTGGGATTCCAAGTGTGATCGGACCAGTAGG +
Preference number: 1 (lower is better)
Translates to: LWSVCMSFLFLDCQI*CSLLWDSKCDRTSR
Trigger: CCTACTGGTCCGATCACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGAAACTCATGCACACTGACCAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp TCCGTATTCAAGTCTACTGGTCCTTGGAAGGTATTTGCACTACTGTaGACCTCTGTGGTTACAGATTCTGCCTGCCATCCAACAGCAATT +
Preference number: 1 (lower is better)
Translates to: SVFKSTGPWKVFALL*TSVVTDSACHPTAI
Trigger: AATTGCTGTTGGATGGCAGGCAGAATCTGTAACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTTGAATACGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp CTCATATTCTTCTCCCATGCCTCTTGTTGCATATTTTTACTTCTCTaGAAGCAACAGGGACACTGCTGCCCATTCCCTACATTCTGTGGG +
Preference number: 1 (lower is better)
Translates to: LIFFSHASCCIFLLL*KQQGHCCPFPTFCG
Trigger: CCCACAGAATGTAGGGAATGGGCAGCAGTGTCCCTGTTGCTTTCAGAGAAGTAAAAATATGCAACAAGAGGCATGGGAGAAGAATATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp AGCTGTGAGATTAAAAAGGACCACAAAGATCCAAAGGCAGTAAACTaGACTCAGACAGACACTGGGGCAAGGCACAGGTACCTTTCTTTC +
Preference number: 1 (lower is better)
Translates to: SCEIKKDHKDPKAVN*TQTDTGARHRYLSF
Trigger: GAAAGAAAGGTACCTGTGCCTTGCCCCAGTGTCTGTCTGAGTTCAGTTTACTGCCTTTGGATCTTTGTGGTCCTTTTTAATCTCACAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp TACTTCCTCACTTCTCGGATTGCAGGTGTGCCATTATGCCTGGTTTaGGAGTCATATATGTTTTCATGCACCTCTCTGTGTCTGCATTGT +
Preference number: 1 (lower is better)
Translates to: YFLTSRIAGVPLCLV*ESYMFSCTSLCLHC
Trigger: ACAATGCAGACACAGAGAGGTGCATGAAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp TATATGGAACAAAGAAGATGCAAGATACAAAAAGAGCTGCAACCTTaGCCTCACTGGCCCTCTATGATAATGCTGTGCCCAGTGCTCATC +
Preference number: 1 (lower is better)
Translates to: YMEQRRCKIQKELQP*PHWPSMIMLCPVLI
Trigger: GATGAGCACTGGGCACAGCATTATCATAGAGGGCCAGTGAGGTCAAGGTTGCAGCTCTTTTTGTATCTTGCATCTTCTTTGTTCCATATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp CAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTaGTGTGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAA +
Preference number: 1 (lower is better)
Translates to: QDQCRQAHTQSLGAI*CGSFPVSLLTIWNK
Trigger: TTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCACATCAAATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp AGCAACCCAGATACTTGCCCCATACAAAGTCCAACCCTTGATAAATaGGGCATGGATTTCTCTTTCACCATTGAAATCCCAACTCTGCAT +
Preference number: 1 (lower is better)
Translates to: SNPDTCPIQSPTLDK*GMDFSFTIEIPTLH
Trigger: ATGCAGAGTTGGGATTTCAATGGTGAAAGAGAAATCCATGCCCCATTTATCAAGGGTTGGACTTTGTATGGGGCAAGTATCTGGGTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp TTTAATACTGGGGCTTACATAGATGACCTAGCTACCCTGCTGTGGTaGATTGTTCTAGGCTATTATGTGCCCTTTAGTAATCTTCTCAGC +
Preference number: 1 (lower is better)
Translates to: FNTGAYIDDLATLLW*IVLGYYVPFSNLLS
Trigger: GCTGAGAAGATTACTAAAGGGCACATAATAGCCTAGAACAATCCACCACAGCAGGGTAGCTAGGTCATCTATGTAAGCCCCAGTATTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp GAACTCAGACAGACACTGGGGCAAGGCACAGGTACCTTTCTTTCCTaGGTCCTTCTTGACATGTGCTTTTCAAATAAATGTAGAATATGT +
Preference number: 1 (lower is better)
Translates to: ELRQTLGQGTGTFLS*VLLDMCFSNKCRIC
Trigger: ACATATTCTACATTTATTTGAAAAGCACATGTCAAGAAGGACTCAGGAAAGAAAGGTACCTGTGCCTTGCCCCAGTGTCTGTCTGAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp CTTGGTTACACTAGGAACTTTTTGCTGATATCCCATGGTGACTTATaGTCAGTGGTCCTTTGTACTTTAGCAACCAGCAACAGATTCTCC +
Preference number: 1 (lower is better)
Translates to: LGYTRNFLLISHGDL*SVVLCTLATSNRFS
Trigger: GGAGAATCTGTTGCTGGTTGCTAAAGTACAAAGGACCACTGATCATAAGTCACCATGGGATATCAGCAAAAAGTTCCTAGTGTAACCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp AAATGGAGGGTTTGTAGATGGAATGCTGAACTTCAGCTGCAGTATTaGGTTACCAGACCTTTTAAATTCAGCTTTGAGTTCTGCATCCTG +
Preference number: 1 (lower is better)
Translates to: KWRVCRWNAELQLQY*VTRPFKFSFEFCIL
Trigger: CAGGATGCAGAACTCAAAGCTGAATTTAAAAGGTCTGGTAACCCAATACTGCAGCTGAAGTTCAGCATTCCATCTACAAACCCTCCATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp GGCATGGATTTCTCTTTCACCATTGAAATCCCAACTCTGCATTGTTaGAGAGACTTGAAAGCCAGTTTCTTAGGCAGCAGACCTTTTTAT +
Preference number: 1 (lower is better)
Translates to: GMDFSFTIEIPTLHC*RDLKASFLGSRPFY
Trigger: ATAAAAAGGTCTGCTGCCTAAGAAACTGGCTTTCAAGTCTCTCCAACAATGCAGAGTTGGGATTTCAATGGTGAAAGAGAAATCCATGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp AGTTGCCTCTCCTGTGATCAACTTTCTGTTAAGGTGGTCTGGGTGTaGATAACCTTCTTTTACACACACTATCTTACTTCATCTCAAGTC +
Preference number: 1 (lower is better)
Translates to: SCLSCDQLSVKVVWV*ITFFYTHYLTSSQV
Trigger: GACTTGAGATGAAGTAAGATAGTGTGTGTAAAAGAAGGTTATCCACACCCAGACCACCTTAACAGAAAGTTGATCACAGGAGAGGCAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp CTGGCTAGGTCATGCATTTGTTTATCCTTTTGTTTGTCCTTTGTGTaGCCCTTTCTCCCACCCTTTCTTAAGAAAAGACTCACAAACAAG +
Preference number: 1 (lower is better)
Translates to: LARSCICLSFCLSFV*PFLPPFLKKRLTNK
Trigger: CTTGTTTGTGAGTCTTTTCTTAAGAAAGGGTGGGAGAAAGGGCCACACAAAGGACAAACAAAAGGATAAACAAATGCATGACCTAGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp ATTAATGTCACCAAAAATCTAATCACGGAGGCAGCTGTGTTTTGCTaGAAGGCCTCCAAACTACCTGACTCATGTCTTCCCTATGAAATA +
Preference number: 1 (lower is better)
Translates to: INVTKNLITEAAVFC*KASKLPDSCLPYEI
Trigger: TATTTCATAGGGAAGACATGAGTCAGGTAGTTTGGAGGCCTTTCAGCAAAACACAGCTGCCTCCGTGATTAGATTTTTGGTGACATTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp AGAGTCTTGGAGCAATTTGATGTGGCTCCTTTCCCGTTTCCCTTTTaGCTATATGGAACAAAGAAGATGCAAGATACAAAAAGAGCTGCA +
Preference number: 1 (lower is better)
Translates to: RVLEQFDVAPFPFPF*LYGTKKMQDTKRAA
Trigger: TGCAGCTCTTTTTGTATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCACATCAAATTGCTCCAAGACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 90 bp TGCTCTGTAAATGGAGGGTTTGTAGATGGAATGCTGAACTTCAGCTaGAGTATTGGGTTACCAGACCTTTTAAATTCAGCTTTGAGTTCT +
Preference number: 1 (lower is better)
Translates to: CSVNGGFVDGMLNFS*SIGLPDLLNSALSS
Trigger: AGAACTCAAAGCTGAATTTAAAAGGTCTGGTAACCCAATACTGCAGCTGAAGTTCAGCATTCCATCTACAAACCCTCCATTTACAGAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 90 bp GCTATAGGAGAGATGACAGCAAGCAAGACTGGCTTGGTTTTTCTCTaGGTACCAAATTTCCCATTTGGGTACAATTACTTTATTTTAGGA +
Preference number: 1 (lower is better)
Translates to: AIGEMTASKTGLVFL*VPNFPFGYNYFILG
Trigger: TCCTAAAATAAAGTAATTGTACCCAAATGGGAAATTTGGTACTCAGAGAAAAACCAAGCCAGTCTTGCTTGCTGTCATCTCTCCTATAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 90 bp AAGCTGTTTTATTCTTTTGATTGGTATAGTTACTGTACATATTTATaGTGTGCATATCATGACCAAATCTGGGTCATAGGTTCTGGTTGG +
Preference number: 1 (lower is better)
Translates to: KLFYSFDWYSYCTYL*CAYHDQIWVIGSGW
Trigger: CCAACCAGAACCTATGACCCAGATTTGGTCATGATATGCACACCATAAATATGTACAGTAACTATACCAATCAAAAGAATAAAACAGCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp CCTCCGACCAGCGAGGAGTACCTGTCAGTGGTGATGGAGGTCCTCTTTGCCTCTAGGGCGAGGTGCCTGTaGAGTGAATGTCCCCATGGG +
Preference number: 2 (lower is better)
Translates to: PPTSEEYLSVVMEVLFASRARCL*SECPHG
Trigger: CCCATGGGGACATTCACTTCACAGGCACCTCGCCCT...AGAGGCAAAGAGGACCTCCATCACCACTGACAGGTACTCCTCGCTGGTCGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp CCTCCGACCAGCGAGGAGTACCTGTCAGTGGTGATGGAGGTCCTCTTTGCCTCTCCAAGGAGGGATACTTaGCTCCCAGGGCTGTGCACA +
Preference number: 2 (lower is better)
Translates to: PPTSEEYLSVVMEVLFASPRRDT*LPGLCT
Trigger: TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGG...AGAGGCAAAGAGGACCTCCATCACCACTGACAGGTACTCCTCGCTGGTCGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCAGACTGCAAGGAGCCTaGAGCCCAGAGCCGGGAGGG +
Preference number: 2 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCRLQGA*SPEPGG
Trigger: CCCTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCT...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp CCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTaGCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCA +
Preference number: 2 (lower is better)
Translates to: PHGNPSFLQPSKEGY*PPRAVHKLPLLKTA
Trigger: TGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGCCTCTTCTCAAGACTaGAAGGAGCCTGGAGCCCAG +
Preference number: 2 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLASSQD*KEPGAQ
Trigger: CTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCGCCTCTTCTCAAGACTaGAAGGAGCCTGGAGCCCAG +
Preference number: 2 (lower is better)
Translates to: SPWESILPPTFQGGILASASSQD*KEPGAQ
Trigger: CTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGC...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAGCCTCTTCTCAAGACTaGAAGGAGCCTGGAGCCCAG +
Preference number: 2 (lower is better)
Translates to: ILPPTFQGGILASQGCAQASSQD*KEPGAQ
Trigger: CTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGC...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCGGGCTGTGCACAAGCTaGCTCTTCTCAAGACTGCAA +
Preference number: 2 (lower is better)
Translates to: SPWESILPPTFQGGILASGLCTS*LFSRLQ
Trigger: TTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCC...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGGGAATCAGTCTCTGGTaGGAGCCCATGCAAGTCCAC +
Preference number: 2 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLGISLW*EPMQVH
Trigger: GTGGACTTGCATGGGCTCCCACCAGAGACTGATTCC...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGTTCCTGGCTTCCTGGTaGGGAGGGGACAGTAATGAT +
Preference number: 2 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLFLASW*GGDSND
Trigger: ATCATTACTGTCCCCTCCTCACCAGGAAGCCAGGAA...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTGCAGCAGATAGGTGGTaGCTGCACCTCTCAGGGAGG +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAIAADRW*LHLSGR
Trigger: CCTCCCTGAGAGGTGCAGGCACCACCTATCTGCTGC...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGAAAAGATGTGGGAATTaGCGGTGTAGGGGAGTTGGC +
Preference number: 2 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLKRCGN*RCRGVG
Trigger: GCCAACTCCCCTACACCGCCAATTCCCACATCTTTT...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp GACTCTGCCGAATTCAACAGAAGCTCTGATGGACGGTCTGACTTTTaGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCA +
Preference number: 2 (lower is better)
Translates to: DSAEFNRSSDGRSDF*RTLGLHTACDRGMS
Trigger: TGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAAAAAGTCAGACCGTCCATCAGAGCTTCTGTTGAATTCGGCAGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACGACCATCCATGCTGTTaGTTTAAGATATGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHDHPCC*FKIWLF
Trigger: GAAAAGCCATATCTTAAACCAACAGCATGGATGGTC...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTCTAGCAGCAGATAGGTaGTGCCTGCACCTCTCAGGG +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAILAADR*CLHLSG
Trigger: CCCTGAGAGGTGCAGGCACCACCTATCTGCTGCTAG...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp GAATTCAACAGAAGCTCTGATGGACGGTCTGACTTTTTGAGGACCTaGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTG +
Preference number: 2 (lower is better)
Translates to: EFNRSSDGRSDFLRT*GLHTACDRGMSLTL
Trigger: CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAAAAAGTCAGACCGTCCATCAGAGCTTCTGTTGAATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp GTTTCAGGGTTGCCTAAGGCTATAGGAGAGATGACAGCAAGCAAGACTGGCTTGGCACAAACTGAAGGTTaGAGGTTGATGCCCCTCTTC +
Preference number: 2 (lower is better)
Translates to: VSGLPKAIGEMTASKTGLAQTEG*RLMPLF
Trigger: GAAGAGGGGCATCAACCTTCAACCTTCAGTTTGTGC...CAAGCCAGTCTTGCTTGCTGTCATCTCTCCTATAGCCTTAGGCAACCCTGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGAGGCTTCAGATATTCTaGATCATCTGCCGAGCTGAT +
Preference number: 2 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLRLQIF*IICRAD
Trigger: ATCAGCTCGGCAGATGATGCAGAATATCTGAAGCCT...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTCTCTTGGCAGGACTTTaGACTGTGTGGGAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAILLAGL*TVWEPL
Trigger: CAAGGGCTCCCACACAGTCCAAAGTCCTGCCAAGAG...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGGCTACCCTGCTGTGGTaGATTGTTCTAGGCTATTAT +
Preference number: 2 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLATLLW*IVLGYY
Trigger: ATAATAGCCTAGAACAATCCACCACAGCAGGGTAGC...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATACAACAGGGACACTGCTaGCCATTCCCTACATTCTGT +
Preference number: 2 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYIQQGHC*PFPTFC
Trigger: ACAGAATGTAGGGAATGGGCAGCAGTGTCCCTGTTG...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAGACCATCCATGCTGTTaGTTTAAGATATGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: ILPPTFQGGILASQGCAQDHPCC*FKIWLF
Trigger: GAAAAGCCATATCTTAAACCAACAGCATGGATGGTC...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGCTCTTGGCAGGACTTTaGACTGTGTGGGAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQLLAGL*TVWEPL
Trigger: CAAGGGCTCCCACACAGTCCAAAGTCCTGCCAAGAG...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp GTTTCAGGGTTGCCTAAGGCTATAGGAGAGATGACAGCAAGCAAGACTGGCTTGTTCCAGGACAACATATaGCCACATAGCCACACACTC +
Preference number: 2 (lower is better)
Translates to: VSGLPKAIGEMTASKTGLFQDNI*PHSHTL
Trigger: GAGTGTGTGGCTATGTGGCCATATGTTGTCCTGGAA...CAAGCCAGTCTTGCTTGCTGTCATCTCTCCTATAGCCTTAGGCAACCCTGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp CCAGGATCTTCCAATCCTCCTGCCTCTACTTCCTCACTTCTCGGATaGCAGGTGTGCCATTATGCCTGGTTTGCGAGTCATATATGTTTT +
Preference number: 2 (lower is better)
Translates to: PGSSNPPASTSSLLG*QVCHYAWFASHICF
Trigger: AAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTAGAGGCAGGAGGATTGGAAGATCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAGCCTCTTCTCAAGACTaGAAGGAGCCTGGAGCCCAG +
Preference number: 2 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRASSQD*KEPGAQ
Trigger: CTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGC...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATACCAAGGAGGGATACTTaGCTCCCAGGGCTGTGCACA +
Preference number: 2 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKIPRRDT*LPGLCT
Trigger: TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGG...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp GAAGCAAAGAGACAGCGGTCTCATATTCTTCTCCCATGCCTCTTGTaGCATATTTTTACTTCTCTGAAAGCAACAGGGACACTGCTGCCC +
Preference number: 2 (lower is better)
Translates to: EAKRQRSHILLPCLL*HIFTSLKATGTLLP
Trigger: GGGCAGCAGTGTCCCTGTTGCTTTCAGAGAAGTAAAAATATGCAACAAGAGGCATGGGAGAAGAATATGAGACCGCTGTCTCTTTGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp CAGACAACCAACTCCCATTGGATCCGTATTCAAGTCTACTGGTCCTaGGAAGGTATTTGCACTACTGTGCACCTCTGTGGTTACAGATTC +
Preference number: 2 (lower is better)
Translates to: QTTNSHWIRIQVYWS*EGICTTVHLCGYRF
Trigger: GAATCTGTAACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTTGAATACGGATCCAATGGGAGTTGGTTGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp GGACTCATAACAAGGGTCTCTCCAGTCCTTTCTCTGACTTCCCATTaGAAATGTTTTCCTCCCAGGATCAATGTAGGCAAGCACACACAC +
Preference number: 2 (lower is better)
Translates to: GLITRVSPVLSLTSH*KCFPPRINVGKHTH
Trigger: GTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAACATTTCAAATGGGAAGTCAGAGAAAGGACTGGAGAGACCCTTGTTATGAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp CTACTTCCTCACTTCTCGGATTGCAGGTGTGCCATTATGCCTGGTTaGCGAGTCATATATGTTTTCATGCACCTCTCTGTGTCTGCATTG +
Preference number: 2 (lower is better)
Translates to: LLPHFSDCRCAIMPG*RVIYVFMHLSVSAL
Trigger: CAATGCAGACACAGAGAGGTGCATGAAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGTTCCAGATGGGGTTATaGTGGGAGGCAGGATACAGA +
Preference number: 2 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVFQMGL*WEAGYR
Trigger: TCTGTATCCTGCCTCCCATCATAACCCCATCTGGAA...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATATGGACTCTGCCCTGCTaGCTCTCCCTGGCATGTTTA +
Preference number: 2 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKIWTLPC*LSLACL
Trigger: TAAACATGCCAGGGAGAGTCAGCAGGGCAGAGTCCA...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTGAGCACATCTGTGATTaGACAGAGGTCTATGTCCTC +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAIEHICD*TEVYVL
Trigger: GAGGACATAGACCTCTGTGCAATCACAGATGTGCTC...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGGACCATCCATGCTGTTaGTTTAAGATATGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLDHPCC*FKIWLF
Trigger: GAAAAGCCATATCTTAAACCAACAGCATGGATGGTC...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACGACCATCCATGCTGTTaGTTTAAGATATGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYDHPCC*FKIWLF
Trigger: GAAAAGCCATATCTTAAACCAACAGCATGGATGGTC...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGACCCTTATGTTCCCATTaGGTGGCAACCCCCACTGAG +
Preference number: 2 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGPLCSH*VATPTE
Trigger: CTCAGTGGGGGTTGCCACCCAATGGGAACATAAGGG...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTGTTTGTCCTTTGTGTaGCCCTTTCTCCCACCCTTT +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAICLSFV*PFLPPF
Trigger: AAAGGGTGGGAGAAAGGGCCACACAAAGGACAAACA...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp GGAGAAGCAAAGAGACAGCGGTCTCATATTCTTCTCCCATGCCTCTaGTTGCATATTTTTACTTCTCTGAAAGCAACAGGGACACTGCTG +
Preference number: 2 (lower is better)
Translates to: GEAKRQRSHILLPCL*LHIFTSLKATGTLL
Trigger: CAGCAGTGTCCCTGTTGCTTTCAGAGAAGTAAAAATATGCAACAAGAGGCATGGGAGAAGAATATGAGACCGCTGTCTCTTTGCTTCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGCCTTGTCACCCAGTCTaGATGTCATCTGTCTTATGG +
Preference number: 2 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVPCHPV*MSSVLW
Trigger: CCATAAGACAGATGACATTCAGACTGGGTGACAAGG...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGCGTCCTGCTCTCATCTaGGCAGCCAGGACAAGAATC +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKRPALI*AARTRI
Trigger: GATTCTTGTCCTGGCTGCTCAGATGAGAGCAGGACG...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGATTCCTGGCTTCCTGGTaGGGAGGGGACAGTAATGAT +
Preference number: 2 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRFLASW*GGDSND
Trigger: ATCATTACTGTCCCCTCCTCACCAGGAAGCCAGGAA...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGATTCAGCTTTGAGTTCTaGATCCTGCCTGCGTCCCTG +
Preference number: 2 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRFSFEF*ILPASL
Trigger: CAGGGACGCAGGCAGGATGCAGAACTCAAAGCTGAA...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATATCTGGTGGGAGCCCATaGAAGTCCACAGCATTCCTT +
Preference number: 2 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKISGGSP*KSTAFL
Trigger: AAGGAATGCTGTGGACTTGCATGGGCTCCCACCAGA...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGCACCATGAAGTCCATTaGTTTTGCTTGTCCTCCCAG +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQHHEVH*FCLSSQ
Trigger: CTGGGAGGACAAGCAAAAGCAATGGACTTCATGGTG...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGCCCTTATGTTCCCATTaGGTGGCAACCCCCACTGAG +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKPLCSH*VATPTE
Trigger: CTCAGTGGGGGTTGCCACCCAATGGGAACATAAGGG...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATATGTCTCCACTGTGCTTaGAATGCTAAAGTTCCAGAT +
Preference number: 2 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYICLHCA*NAKVPD
Trigger: ATCTGGAACTTTAGCATTCCAAGCACAGTGGAGACA...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATATTGTCTGTCAGCAGACCCAGTAGACTTGCACACACTGCCATGCAAGAAAGACCAACTCTGCATTGTTaGAGAGACTTGAAAGCCAGT +
Preference number: 2 (lower is better)
Translates to: ILSVSRPSRLAHTAMQERPTLHC*RDLKAS
Trigger: ACTGGCTTTCAAGTCTCTCCAACAATGCAGAGTTGG...TCTTTCTTGCATGGCAGTGTGTGCAAGTCTACTGGGTCTGCTGACAGACAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGTTCCAGGACAACATATaGCCACATAGCCACACACTC +
Preference number: 2 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVFQDNI*PHSHTL
Trigger: GAGTGTGTGGCTATGTGGCCATATGTTGTCCTGGAA...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGGGTCCAGAGGGCAGGTaGATGTGTCATGGACACTCT +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKGPEGR*MCHGHS
Trigger: AGAGTGTCCATGACACATCCACCTGCCCTCTGGACC...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGCATCCCATCAGAGACTaGCCAGGTCCAGAGGGCAGG +
Preference number: 2 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGHPIRD*PGPEGR
Trigger: CCTGCCCTCTGGACCTGGCCAGTCTCTGATGGGATG...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGTTGGATGGACTCTTCTaGCAGCGTCAAACATTGACC +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQLDGLF*QRQTLT
Trigger: GGTCAATGTTTGACGCTGCCAGAAGAGTCCATCCAA...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp CTATATGGAACAAAGAAGATGCAAGATACAAAAAGAGCTGCAACCTaGACCTCACTGGCCCTCTATGATAATGCTGTGCCCAGTGCTCAT +
Preference number: 2 (lower is better)
Translates to: LYGTKKMQDTKRAAT*TSLALYDNAVPSAH
Trigger: ATGAGCACTGGGCACAGCATTATCATAGAGGGCCAGTGAGGTCAAGGTTGCAGCTCTTTTTGTATCTTGCATCTTCTTTGTTCCATATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGATTCCAGATGGGGTTATaGTGGGAGGCAGGATACAGA +
Preference number: 2 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRFQMGL*WEAGYR
Trigger: TCTGTATCCTGCCTCCCATCATAACCCCATCTGGAA...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTCTATGATAATGCTGTaGCCAGTGCTCATCTTGACA +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAISMIML*PVLILT
Trigger: TGTCAAGATGAGCACTGGGCACAGCATTATCATAGA...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGATCTTCCAATCCTCCTaGCTCTACTTCCTCACTTCT +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQIFQSS*LYFLTS
Trigger: AGAAGTGAGGAAGTAGAGGCAGGAGGATTGGAAGAT...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTGTCTCCACTGTGCTTaGAATGCTAAAGTTCCAGAT +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAICLHCA*NAKVPD
Trigger: ATCTGGAACTTTAGCATTCCAAGCACAGTGGAGACA...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGAGTGGGAGCTGGCTTTaGGAATGTTGTCTTCTCAAA +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQSGSWL*ECCLLK
Trigger: TTTGAGAAGACAACATTCCCAAAGCCAGCTCCCACT...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGAGTGGGAGCTGGCTTTaGGAATGTTGTCTTCTCAAA +
Preference number: 2 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVSGSWL*ECCLLK
Trigger: TTTGAGAAGACAACATTCCCAAAGCCAGCTCCCACT...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTCTGTTAAGGTGGTCTaGGTGTGGATAACCTTCTTT +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAISVKVV*VWITFF
Trigger: AAAGAAGGTTATCCACACCCAGACCACCTTAACAGA...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGTACAGGGTCCTACAGTaGCAACTTTTAACCATGTCA +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQYRVLQ*QLLTMS
Trigger: TGACATGGTTAAAAGTTGCCACTGTAGGACCCTGTA...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGACAACCAACTCCCATTaGATCCGTATTCAAGTCTAC +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQTTNSH*IRIQVY
Trigger: GTAGACTTGAATACGGATCCAATGGGAGTTGGTTGT...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTCATTGTACAATAATTTaGGCCCATGTGCCTAAACTT +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAIHCTII*AHVPKL
Trigger: AAGTTTAGGCACATGGGCTCAAATTATTGTACAATG...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGAAAGAGCTGCAACCTTaGCCTCACTGGCCCTCTATG +
Preference number: 2 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGKELQP*PHWPSM
Trigger: CATAGAGGGCCAGTGAGGTCAAGGTTGCAGCTCTTT...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGGAGCACATCTGTGATTaGACAGAGGTCTATGTCCTC +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKEHICD*TEVYVL
Trigger: GAGGACATAGACCTCTGTGCAATCACAGATGTGCTC...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTTGATAAATGGGGCATaGATTTCTCTTTCACCATTG +
Preference number: 2 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAILINGA*ISLSPL
Trigger: CAATGGTGAAAGAGAAATCCATGCCCCATTTATCAA...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp AAAACATGTCAGATGACAATCATGGCTAAGATTGCCCTTGTTCTTTaGATGATAATGGGCCGTGCACTGGAACATGATAGGTTCAGTTTC +
Preference number: 2 (lower is better)
Translates to: KTCQMTIMAKIALVL*MIMGRALEHDRFSF
Trigger: GAAACTGAACCTATCATGTTCCAGTGCACGGCCCATTATCATCAAAAGAACAAGGGCAATCTTAGCCATGATTGTCATCTGACATGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATATTGATTGTCTATGTGTaGGAAAGGCATGTGGATGCA +
Preference number: 2 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKILIVYV*ERHVDA
Trigger: TGCATCCACATGCCTTTCTCACACATAGACAATCAA...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGACAGGTGGATGTGTCATaGACACTCTCAAATTCGAAT +
Preference number: 2 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRQVDVS*TLSNSN
Trigger: ATTCGAATTTGAGAGTGTCCATGACACATCCACCTG...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATAAAGTCTACTGGTCCTTaGAAGGTATTTGCACTACTG +
Preference number: 2 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKIKSTGP*KVFALL
Trigger: CAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTT...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 90 bp TTCTCTTTCACCATTGAAATCCCAACTCTGCATTGTTGGAGAGACTaGAAAGCCAGTTTCTTAGGCAGCAGACCTTTTTATTTCTTGTGT +
Preference number: 2 (lower is better)
Translates to: FSFTIEIPTLHCWRD*KASFLGSRPFYFLC
Trigger: ACACAAGAAATAAAAAGGTCTGCTGCCTAAGAAACTGGCTTTCAAGTCTCTCCAACAATGCAGAGTTGGGATTTCAATGGTGAAAGAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGGTTACAGATTCTGCCTaGCATCCAACAGCAATTAGA +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKVTDSA*HPTAIR
Trigger: TCTAATTGCTGTTGGATGGCAGGCAGAATCTGTAAC...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGGAGTCCCAATCTTTCTaGGTGCAAGGAAGAATAGAA +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKESQSF*VQGRIE
Trigger: TTCTATTCTTCCTTGCACCCAGAAAGATTGGGACTC...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGACAACCAACTCCCATTaGATCCGTATTCAAGTCTAC +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKTTNSH*IRIQVY
Trigger: GTAGACTTGAATACGGATCCAATGGGAGTTGGTTGT...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGCCAAACAGAAGATCTTaGGCACAGTTTTATACTTAT +
Preference number: 2 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQPNRRS*AQFYTY
Trigger: ATAAGTATAAAACTGTGCCCAAGATCTTCTGTTTGG...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGCCTGTCAGAGGCCTTTaGAAAAGCATTTTCCTTGAC +
Preference number: 2 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGPVRGL*KSIFLD
Trigger: GTCAAGGAAAATGCTTTTTCAAAGGCCTCTGACAGG...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAACCCAAAGTGCCAAGTaGTATGAGAGAAATAGCTCG +
Preference number: 2 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKTQSAK*YERNSS
Trigger: CGAGCTATTTCTCTCATATCACTTGGCACTTTGGGT...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGCGAAATTCTCTGAAATaGTTCATTCAGACAGGCATC +
Preference number: 2 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKRNSLK*FIQTGI
Trigger: GATGCCTGTCTGAATGAAGCATTTCAGAGAATTTCG...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATATTGATAAATGGGGCATaGATTTCTCTTTCACCATTG +
Preference number: 2 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKILINGA*ISLSPL
Trigger: CAATGGTGAAAGAGAAATCCATGCCCCATTTATCAA...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR GCA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGGTATTTGCACTACTGTaGACCTCTGTGGTTACAGAT +
Preference number: 2 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGVFALL*TSVVTD
Trigger: ATCTGTAACCACAGAGGTGCACAGTAGTGCAAATAC...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CCA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGCAAGCAAGACTGGCTTaGTTTTTCTCTGAGTACCAA +
Preference number: 2 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGQARLA*FFSEYQ
Trigger: TTGGTACTCAGAGAAAAACCAAGCCAGTCTTGCTTG...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAATTTCTCTTTCACCATTaGAATCCCAACTCTGCATTG +
Preference number: 2 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKFLFHH*NPNSAL
Trigger: CAATGCAGAGTTGGGATTTCAATGGTGAAAGAGAAA...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR TCA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAGGCTTGGTTTTTCTCTaGGTACCAAATTTCCCATTT +
Preference number: 2 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKGLVFL*VPNFPF
Trigger: AAATGGGAAATTTGGTACTCAGAGAAAAACCAAGCC...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp GGGTGGCAACCCCCACTGAGCACCTCTGCTGGACGGTaGTTTTCAGCACACATCTCAGCGCTCTTGGCAGGA +
Preference number: 3 (lower is better)
Translates to: GWQPPLSTSAGR*FSAHISALLAG
Trigger: TCCTGCCAAGAGCGCTGAGATGTGTGCTGAAAATCACCGTCCAGCAGAGGTGCTCAGTGGGGGTTGCCACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTaGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTT +
Preference number: 3 (lower is better)
Translates to: CTSCLFSRLQGA*SPEPGGTIHAV
Trigger: AACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TCCCATTGGGTGGCAACCCCCACTGAGCACCTCTGCTaGACGGTGATTTTCAGCACACATCTCAGCGCTCTT +
Preference number: 3 (lower is better)
Translates to: SHWVATPTEHLC*TVIFSTHLSAL
Trigger: AAGAGCGCTGAGATGTGTGCTGAAAATCACCGTCCAGCAGAGGTGCTCAGTGGGGGTTGCCACCCAATGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp ACGTACCTCCGACCAGCGAGGAGTACCTGTCAGTGGTaGTGGAGGTCCTCTTTGCCTCTTACACGGAGTCAT +
Preference number: 3 (lower is better)
Translates to: TYLRPARSTCQW*WRSSLPLTRSH
Trigger: ATGACTCCGTGTAAGAGGCAAAGAGGACCTCCATCACCACTGACAGGTACTCCTCGCTGGTCGGAGGTACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp CCAGCAACAGATTCTCCCAGTGGAATCAGTCTCTGGTaGGAGCCCATGCAAGTCCACAGCATTCCTTCATCC +
Preference number: 3 (lower is better)
Translates to: PATDSPSGISLW*EPMQVHSIPSS
Trigger: GGATGAAGGAATGCTGTGGACTTGCATGGGCTCCCACCAGAGACTGATTCCACTGGGAGAATCTGTTGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GGGCTTGCTCTGCCTGCTGTTGCCCTGCTCTGTAAATaGAGGGTTTGTAGATGGAATGCTGAACTTCAGCTG +
Preference number: 3 (lower is better)
Translates to: GLALPAVALLCK*RVCRWNAELQL
Trigger: CAGCTGAAGTTCAGCATTCCATCTACAAACCCTCCATTTACAGAGCAGGGCAACAGCAGGCAGAGCAAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp CAACCAGCAACAGATTCTCCCAGTGGAATCAGTCTCTaGTGGGAGCCCATGCAAGTCCACAGCATTCCTTCA +
Preference number: 3 (lower is better)
Translates to: QPATDSPSGISL*WEPMQVHSIPS
Trigger: TGAAGGAATGCTGTGGACTTGCATGGGCTCCCACCAGAGACTGATTCCACTGGGAGAATCTGTTGCTGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGCCCAACTCTGCATTGTaGGAGAGACTTGAAAGCCAG +
Preference number: 3 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLPNSAL*ERLESQ
Trigger: CTGGCTTTCAAGTCTCTCCAACAATGCAGAGTTGGG...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp AGACAGTGGAACATGGAAGGAAACCCTTTACCAGAGTaGGACCACGTGACCCAAGCACACCACTCCAAACAG +
Preference number: 3 (lower is better)
Translates to: RQWNMEGNPLPE*DHVTQAHHSKQ
Trigger: CTGTTTGGAGTGGTGTGCTTGGGTCACGTGGTCTCACTCTGGTAAAGGGTTTCCTTCCATGTTCCACTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp CCAATCCTCCTGCCTCTACTTCCTCACTTCTCGGATTaGAGGTGTGCCATTATGCCTGGTTTGCGAGTCATA +
Preference number: 3 (lower is better)
Translates to: PILLPLLPHFSD*RCAIMPGLRVI
Trigger: TATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTAGAGGCAGGAGGATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp AACACCATTAATCTGATGCTTCATCCCATCAGAGACTaGCCAGGTCCAGAGGGCAGGTGGATGTGTCATGGA +
Preference number: 3 (lower is better)
Translates to: NTINLMLHPIRD*PGPEGRWMCHG
Trigger: TCCATGACACATCCACCTGCCCTCTGGACCTGGCCAGTCTCTGATGGGATGAAGCATCAGATTAATGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp AATTCAACAGAAGCTCTGATGGACGGTCTGACTTTTTaGGGACCTTGGGCCTCCACACAGCCTGTGATAGAG +
Preference number: 3 (lower is better)
Translates to: NSTEALMDGLTF*GPWASTQPVIE
Trigger: CTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAAAAAGTCAGACCGTCCATCAGAGCTTCTGTTGAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp ACATGGAAGGAAACCCTTTACCAGAGTGAGACCACGTaGCCCAAGCACACCACTCCAAACAGCCTATGTACA +
Preference number: 3 (lower is better)
Translates to: TWKETLYQSETT*PKHTTPNSLCT
Trigger: TGTACATAGGCTGTTTGGAGTGGTGTGCTTGGGTCACGTGGTCTCACTCTGGTAAAGGGTTTCCTTCCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp GAGGTTGATTGTCTATGTGTGAGAAAGGCATGTGGATaGATGCTGTCTGGGCAGTCTACATGGGAAGCAAGC +
Preference number: 3 (lower is better)
Translates to: EVDCLCVRKACG*MLSGQSTWEAS
Trigger: GCTTGCTTCCCATGTAGACTGCCCAGACAGCATGCATCCACATGCCTTTCTCACACATAGACAATCAACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp AGATCCAAAGGCAGTAAACTGAACTCAGACAGACACTaGGGCAAGGCACAGGTACCTTTCTTTCCTGAGTCC +
Preference number: 3 (lower is better)
Translates to: RSKGSKLNSDRH*GKAQVPFFPES
Trigger: GGACTCAGGAAAGAAAGGTACCTGTGCCTTGCCCCAGTGTCTGTCTGAGTTCAGTTTACTGCCTTTGGATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp CTTTGTACTTTAGCAACCAGCAACAGATTCTCCCAGTaGAATCAGTCTCTGGTGGGAGCCCATGCAAGTCCA +
Preference number: 3 (lower is better)
Translates to: LCTLATSNRFSQ*NQSLVGAHASP
Trigger: TGGACTTGCATGGGCTCCCACCAGAGACTGATTCCACTGGGAGAATCTGTTGCTGGTTGCTAAAGTACAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTCCATGACACAGGACTaGGAAACTGTTCTGGGGTGG +
Preference number: 3 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAISMTQD*ETVLGW
Trigger: CCACCCCAGAACAGTTTCCAAGTCCTGTGTCATGGA...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATAAGACCTTTTTATTTCTaGTGTCCTCAGGGGGCCTCC +
Preference number: 3 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYIRPFYF*CPQGAS
Trigger: GGAGGCCCCCTGAGGACACAAGAAATAAAAAGGTCT...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGATGATCAGTGGTCCTTaGTACTTTAGCAACCAGCAA +
Preference number: 3 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLMISGP*YFSNQQ
Trigger: TTGCTGGTTGCTAAAGTACAAAGGACCACTGATCAT...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp GATACAGATGTTGTACGGATCTACAGACCAAATCCATaGCACAGGACTTGGAAACTGTTCTGGGGTGGGGGT +
Preference number: 3 (lower is better)
Translates to: DTDVVRIYRPNP*HRTWKLFWGGG
Trigger: ACCCCCACCCCAGAACAGTTTCCAAGTCCTGTGTCATGGATTTGGTCTGTAGATCCGTACAACATCTGTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp GTAGACACTGCAGCCCTTTGTGACTGCACTGAAAAATaGTCTAAGGAGCTATGCCCTTATGTTCCCATTGGG +
Preference number: 3 (lower is better)
Translates to: VDTAALCDCTEK*SKELCPYVPIG
Trigger: CCCAATGGGAACATAAGGGCATAGCTCCTTAGAGCATTTTTCAGTGCAGTCACAAAGGGCTGCAGTGTCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp GCACTACTGTGCACCTCTGTGGTTACAGATTCTGCCTaGCATCCAACAGCAATTAGAGTGCACTTCTTCAAG +
Preference number: 3 (lower is better)
Translates to: ALLCTSVVTDSA*HPTAIRVHFFK
Trigger: CTTGAAGAAGTGCACTCTAATTGCTGTTGGATGGCAGGCAGAATCTGTAACCACAGAGGTGCACAGTAGTGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp AAGTCTACTGGTCCTTGGAAGGTATTTGCACTACTGTaGACCTCTGTGGTTACAGATTCTGCCTGCCATCCA +
Preference number: 3 (lower is better)
Translates to: KSTGPWKVFALL*TSVVTDSACHP
Trigger: TGGATGGCAGGCAGAATCTGTAACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GCTGTTGCCCTGCTCTGTAAATGGAGGGTTTGTAGATaGAATGCTGAACTTCAGCTGCAGTATTGGGTTACC +
Preference number: 3 (lower is better)
Translates to: AVALLCKWRVCR*NAELQLQYWVT
Trigger: GGTAACCCAATACTGCAGCTGAAGTTCAGCATTCCATCTACAAACCCTCCATTTACAGAGCAGGGCAACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp AGACTGGCCAGGTCCAGAGGGCAGGTGGATGTGTCATaGACACTCTCAAATTCGAATCTAGGAGTTTCTATT +
Preference number: 3 (lower is better)
Translates to: RLARSRGQVDVS*TLSNSNLGVSI
Trigger: AATAGAAACTCCTAGATTCGAATTTGAGAGTGTCCATGACACATCCACCTGCCCTCTGGACCTGGCCAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TCTATGTGTGAGAAAGGCATGTGGATGCATGCTGTCTaGGCAGTCTACATGGGAAGCAAGCTACTTCCAGAT +
Preference number: 3 (lower is better)
Translates to: SMCEKGMWMHAV*AVYMGSKLLPD
Trigger: ATCTGGAAGTAGCTTGCTTCCCATGTAGACTGCCCAGACAGCATGCATCCACATGCCTTTCTCACACATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGTCCAAGGAGGGATACTaGCCTCCCAGGGCTGTGCAC +
Preference number: 3 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKSKEGY*PPRAVH
Trigger: GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGA...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATAACTGTGTGGGAGCCCTaGGCATTAAAACATGTCAGA +
Preference number: 3 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYITVWEP*ALKHVR
Trigger: TCTGACATGTTTTAATGCCAAGGGCTCCCACACAGT...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp ATGAGATGGTCCTTGTCTCTTTTTATGACACCCGAGTaGGGCTTCAGATATTCTGCATCATCTGCCGAGCTG +
Preference number: 3 (lower is better)
Translates to: MRWSLSLFMTPE*GFRYSASSAEL
Trigger: CAGCTCGGCAGATGATGCAGAATATCTGAAGCCTCACTCGGGTGTCATAAAAAGAGACAAGGACCATCTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp ACCAAAAATCTAATCACGGAGGCAGCTGTGTTTTGCTaGAAGGCCTCCAAACTACCTGACTCATGTCTTCCC +
Preference number: 3 (lower is better)
Translates to: TKNLITEAAVFC*KASKLPDSCLP
Trigger: GGGAAGACATGAGTCAGGTAGTTTGGAGGCCTTTCAGCAAAACACAGCTGCCTCCGTGATTAGATTTTTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp CTGTCAGCAGACCCAGTAGACTTGCACACACTGCCATaGAAGAAAGAAATTGGAGATGACCTAAGTCTATCC +
Preference number: 3 (lower is better)
Translates to: LSADPVDLHTLP*KKEIGDDLSLS
Trigger: GGATAGACTTAGGTCATCTCCAATTTCTTTCTTGCATGGCAGTGTGTGCAAGTCTACTGGGTCTGCTGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp CCTGCCTCTACTTCCTCACTTCTCGGATTGCAGGTGTaGCATTATGCCTGGTTTGCGAGTCATATATGTTTT +
Preference number: 3 (lower is better)
Translates to: PASTSSLLGLQV*HYAWFASHICF
Trigger: AAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGTGAGGAAGTAGAGGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp CCCAAGCACACCACTCCAAACAGCCTATGTACAGTTTaGCATCCGAATTCCAGTTATGTACAGACAGAGTCA +
Preference number: 3 (lower is better)
Translates to: PKHTTPNSLCTV*HPNSSYVQTES
Trigger: TGACTCTGTCTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGTGTGCTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GTCCTTGGAAGGTATTTGCACTACTGTGCACCTCTGTaGTTACAGATTCTGCCTGCCATCCAACAGCAATTA +
Preference number: 3 (lower is better)
Translates to: VLGRYLHYCAPL*LQILPAIQQQL
Trigger: TAATTGCTGTTGGATGGCAGGCAGAATCTGTAACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp ACTCCCATTGGATCCGTATTCAAGTCTACTGGTCCTTaGAAGGTATTTGCACTACTGTGCACCTCTGTGGTT +
Preference number: 3 (lower is better)
Translates to: TPIGSVFKSTGP*KVFALLCTSVV
Trigger: AACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTTGAATACGGATCCAATGGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp ACAACCAACTCCCATTGGATCCGTATTCAAGTCTACTaGTCCTTGGAAGGTATTTGCACTACTGTGCACCTC +
Preference number: 3 (lower is better)
Translates to: TTNSHWIRIQVY*SLEGICTTVHL
Trigger: GAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTTGAATACGGATCCAATGGGAGTTGGTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGACAGGGGGCCTCCACTTaGAAGTGCCTTTTGCTTAAG +
Preference number: 3 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRQGAST*KCLLLK
Trigger: CTTAAGCAAAAGGCACTTCAAAGTGGAGGCCCCCTG...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ATATTGTCTGTCAGCAGACCCAGTAGACTTGCACACACTGCCATGCAAGAAAGAAATCCCAACTCTGCATaGTTGGAGAGACTTGAAAGC +
Preference number: 3 (lower is better)
Translates to: ILSVSRPSRLAHTAMQERNPNSA*LERLES
Trigger: GCTTTCAAGTCTCTCCAACAATGCAGAGTTGGGATT...TCTTTCTTGCATGGCAGTGTGTGCAAGTCTACTGGGTCTGCTGACAGACAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp ACTGTGCTTGGAATGCTAAAGTTCCAGATGGGGTTATaGTGGGAGGCAGGATACAGATGTTGTACGGATCTA +
Preference number: 3 (lower is better)
Translates to: TVLGMLKFQMGL*WEAGYRCCTDL
Trigger: TAGATCCGTACAACATCTGTATCCTGCCTCCCATCATAACCCCATCTGGAACTTTAGCATTCCAAGCACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp CAAAGAAGATGCAAGATACAAAAAGAGCTGCAACCTTaGCCTCACTGGCCCTCTATGATAATGCTGTGCCCA +
Preference number: 3 (lower is better)
Translates to: QRRCKIQKELQP*PHWPSMIMLCP
Trigger: TGGGCACAGCATTATCATAGAGGGCCAGTGAGGTCAAGGTTGCAGCTCTTTTTGTATCTTGCATCTTCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp TGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTTaGTGTGGCTCCTTTCCCGTTTCCCTTTTGACTATA +
Preference number: 3 (lower is better)
Translates to: CRQAHTQSLGAI*CGSFPVSLLTI
Trigger: TATAGTCAAAAGGGAAACGGGAAAGGAGCCACATCAAATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp ACCAACCAGAAATCAGAATGTATCCAACAATCGTCCTaGTCTCATCTGAGCAGCCAGGACAAGAATCTGAGA +
Preference number: 3 (lower is better)
Translates to: TNQKSECIQQSS*SHLSSQDKNLR
Trigger: TCTCAGATTCTTGTCCTGGCTGCTCAGATGAGAGCAGGACGATTGTTGGATACATTCTGATTTCTGGTTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp ACTTCTCGGATTGCAGGTGTGCCATTATGCCTGGTTTaGGAGTCATATATGTTTTCATGCACCTCTCTGTGT +
Preference number: 3 (lower is better)
Translates to: TSRIAGVPLCLV*ESYMFSCTSLC
Trigger: ACACAGAGAGGTGCATGAAAACATATATGACTCGCAAACCAGGCATAATGGCACACCTGCAATCCGAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GGGGCTTACATAGATGACCTAGCTACCCTGCTGTGGTaGATTGTTCTAGGCTATTATGTGCCCTTTAGTAAT +
Preference number: 3 (lower is better)
Translates to: GAYIDDLATLLW*IVLGYYVPFSN
Trigger: ATTACTAAAGGGCACATAATAGCCTAGAACAATCCACCACAGCAGGGTAGCTAGGTCATCTATGTAAGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGGCTCTTGGCAGGACTTaGGACTGTGTGGGAGCCCTT +
Preference number: 3 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGALGRT*DCVGAL
Trigger: AAGGGCTCCCACACAGTCCAAAGTCCTGCCAAGAGC...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGATCTCCTGTTTCAGGGTaGCCTAAGGCTATAGGAGAG +
Preference number: 3 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRSPVSG*PKAIGE
Trigger: CTCTCCTATAGCCTTAGGCAACCCTGAAACAGGAGA...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp TGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTaGCTCTGCATTCAGATATTTTTCTTTAGGACAAGT +
Preference number: 3 (lower is better)
Translates to: WASTQPVIEECH*LCIQIFFFRTS
Trigger: ACTTGTCCTAAAGAAAAATATCTGAATGCAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp AATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTaGTACTTGTTGGAGTCCCAATCTTTCTGGGTGCAA +
Preference number: 3 (lower is better)
Translates to: NAFSGTDLLSVT*YLLESQSFWVQ
Trigger: TTGCACCCAGAAAGATTGGGACTCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp AGGACTGCGTTGATCTCTCAAAGCCTGGCTAGGTCATaGATTTGTTTATCCTTTTGTTTGTCCTTTGTGTGG +
Preference number: 3 (lower is better)
Translates to: RTALISQSLARS*ICLSFCLSFVW
Trigger: CCACACAAAGGACAAACAAAAGGATAAACAAATGCATGACCTAGCCAGGCTTTGAGAGATCAACGCAGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp AAGAAACGATGGAACATGTACTGTCTCCACTGTGCTTaGAATGCTAAAGTTCCAGATGGGGTTATGATGGGA +
Preference number: 3 (lower is better)
Translates to: KKRWNMYCLHCA*NAKVPDGVMMG
Trigger: TCCCATCATAACCCCATCTGGAACTTTAGCATTCCAAGCACAGTGGAGACAGTACATGTTCCATCGTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TCTGTAACTTGCTACTTGTTGGAGTCCCAATCTTTCTaGGTGCAAGGAAGAATAGAATTTGTGTGTGTGCCC +
Preference number: 3 (lower is better)
Translates to: SVTCYLLESQSF*VQGRIEFVCVP
Trigger: GGGCACACACACAAATTCTATTCTTCCTTGCACCCAGAAAGATTGGGACTCCAACAAGTAGCAAGTTACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGCTGGCTTTGGGAATGTaGTCTTCTCAAAGCAACTTT +
Preference number: 3 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVLALGM*SSQSNF
Trigger: AAAGTTGCTTTGAGAAGACAACATTCCCAAAGCCAG...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGCTGGCTTTGGGAATGTaGTCTTCTCAAAGCAACTTT +
Preference number: 3 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQLALGM*SSQSNF
Trigger: AAAGTTGCTTTGAGAAGACAACATTCCCAAAGCCAG...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGCTCCCATGCCTCTTGTaGCATATTTTTACTTCTCTG +
Preference number: 3 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQLPCLL*HIFTSL
Trigger: CAGAGAAGTAAAAATATGCAACAAGAGGCATGGGAG...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGTCTGTAACTTGCTACTaGTTGGAGTCCCAATCTTTC +
Preference number: 3 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQSVTCY*LESQSF
Trigger: GAAAGATTGGGACTCCAACAAGTAGCAAGTTACAGA...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp GTGCAAGGAAGAATAGAATTTGTGTGTGTGCCCGAGTaGTCAAGTGTGTGTGCATGTGTGTTTGTATTAAAG +
Preference number: 3 (lower is better)
Translates to: VQGRIEFVCVPE*SSVCACVFVLK
Trigger: CTTTAATACAAACACACATGCACACACACTTGAGCACTCGGGCACACACACAAATTCTATTCTTCCTTGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp GCGAGTCATATATGTTTTCATGCACCTCTCTGTGTCTaGATTGTGAAGATGGAAGCTGTTGCTATTGAGACT +
Preference number: 3 (lower is better)
Translates to: ASHICFHAPLCV*IVKMEAVAIET
Trigger: AGTCTCAATAGCAACAGCTTCCATCTTCACAATGCAGACACAGAGAGGTGCATGAAAACATATATGACTCGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TTCTCTTTCACCATTGAAATCCCAACTCTGCATTGTTaGAGAGACTTGAAAGCCAGTTTCTTAGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: FSFTIEIPTLHC*RDLKASFLGSR
Trigger: TCTGCTGCCTAAGAAACTGGCTTTCAAGTCTCTCCAACAATGCAGAGTTGGGATTTCAATGGTGAAAGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GATACTTGCCCCATACAAAGTCCAACCCTTGATAAATaGGGCATGGATTTCTCTTTCACCATTGAAATCCCA +
Preference number: 3 (lower is better)
Translates to: DTCPIQSPTLDK*GMDFSFTIEIP
Trigger: TGGGATTTCAATGGTGAAAGAGAAATCCATGCCCCATTTATCAAGGGTTGGACTTTGTATGGGGCAAGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGTCCATGACACAGGACTaGGAAACTGTTCTGGGGTGG +
Preference number: 3 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGSMTQD*ETVLGW
Trigger: CCACCCCAGAACAGTTTCCAAGTCCTGTGTCATGGA...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAACAGGGGGCCTCCACTTaGAAGTGCCTTTTGCTTAAG +
Preference number: 3 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKQGAST*KCLLLK
Trigger: CTTAAGCAAAAGGCACTTCAAAGTGGAGGCCCCCTG...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGACATTGTTGGAGAGACTaGAAAGCCAGTTTCTTAGGC +
Preference number: 3 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRHCWRD*KASFLG
Trigger: GCCTAAGAAACTGGCTTTCAAGTCTCTCCAACAATG...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp ACTAGGAACTTTTTGCTGATATCCCATGGTGACTTATaGTCAGTGGTCCTTTGTACTTTAGCAACCAGCAAC +
Preference number: 3 (lower is better)
Translates to: TRNFLLISHGDL*SVVLCTLATSN
Trigger: GTTGCTGGTTGCTAAAGTACAAAGGACCACTGATCATAAGTCACCATGGGATATCAGCAAAAAGTTCCTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GATGCCCCTCTTCAAATAGGTACTATAAATATACTAGAGCTATCCCTGAAAAGAAGCCTCTGTCCTCTATaGTGTCATCACAATGAACGT +
Preference number: 3 (lower is better)
Translates to: DAPLQIGTINILELSLKRSLCPL*CHHNER
Trigger: ACGTTCATTGTGATGACACAATAGAGGACAGAGGCT...TCTTTTCAGGGATAGCTCTAGTATATTTATAGTACCTATTTGAAGAGGGGCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAACTGTGTGGGAGCCCTaGGCATTAAAACATGTCAGA +
Preference number: 3 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKTVWEP*ALKHVR
Trigger: TCTGACATGTTTTAATGCCAAGGGCTCCCACACAGT...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGAGTGTTCAAAAGCAGTaGACTTCTGCCACAAAGGAA +
Preference number: 3 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKSVQKQ*TSATKE
Trigger: TTCCTTTGTGGCAGAAGTCAACTGCTTTTGAACACT...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp GCATGTGTGTTTGTATTAAAGCACACCGAAATTCTCTaGAATGCTTCATTCAGACAGGCATCAAACCCTATC +
Preference number: 3 (lower is better)
Translates to: ACVFVLKHTEIL*NASFRQASNPI
Trigger: GATAGGGTTTGATGCCTGTCTGAATGAAGCATTTCAGAGAATTTCGGTGTGCTTTAATACAAACACACATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp GTTTTAGTCTTGAGAGCTTCTGTCCATATCTATACATaGACAGCTCACCATCCTCAGTCAGAAACTGTTTTG +
Preference number: 3 (lower is better)
Translates to: VLVLRASVHIYT*TAHHPQSETVL
Trigger: CAAAACAGTTTCTGACTGAGGATGGTGAGCTGTTCATGTATAGATATGGACAGAAGCTCTCAAGACTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GTTTGTAGATGGAATGCTGAACTTCAGCTGCAGTATTaGGTTACCAGACCTTTTAAATTCAGCTTTGAGTTC +
Preference number: 3 (lower is better)
Translates to: VCRWNAELQLQY*VTRPFKFSFEF
Trigger: GAACTCAAAGCTGAATTTAAAAGGTCTGGTAACCCAATACTGCAGCTGAAGTTCAGCATTCCATCTACAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TCATGCATTTGTTTATCCTTTTGTTTGTCCTTTGTGTaGCCCTTTCTCCCACCCTTTCTTAAGAAAAGACTC +
Preference number: 3 (lower is better)
Translates to: SCICLSFCLSFV*PFLPPFLKKRL
Trigger: GAGTCTTTTCTTAAGAAAGGGTGGGAGAAAGGGCCACACAAAGGACAAACAAAAGGATAAACAAATGCATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATATCAAAAATGTTCACTTaGGTCAGTGTGCATGAGTTT +
Preference number: 3 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKISKMFT*VSVHEF
Trigger: AAACTCATGCACACTGACCAAAGTGAACATTTTTGA...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGATCAAAAATGTTCACTTaGGTCAGTGTGCATGAGTTT +
Preference number: 3 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGSKMFT*VSVHEF
Trigger: AAACTCATGCACACTGACCAAAGTGAACATTTTTGA...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGCTTCTCCCATGCCTCTaGTTGCATATTTTTACTTCT +
Preference number: 3 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKLLPCL*LHIFTS
Trigger: AGAAGTAAAAATATGCAACAAGAGGCATGGGAGAAG...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp CAATGTAATTTGCTGCCAGCCAGTCCCATTTTCTACTaGAATAAACCTTGTAGAAGTCATACAAGATGTCAG +
Preference number: 3 (lower is better)
Translates to: QCNLLPASPIFY*NKPCRSHTRCQ
Trigger: CTGACATCTTGTATGACTTCTACAAGGTTTATTTCAGTAGAAAATGGGACTGGCTGGCAGCAAATTACATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp CTTTTGTTCAAAAATGTTCACTTTGGTCAGTGTGCATaGGTTTCCTCTTCCTTGACTGTCAAATCTGATGCT +
Preference number: 3 (lower is better)
Translates to: LLFKNVHFGQCA*VSSSLTVKSDA
Trigger: AGCATCAGATTTGACAGTCAAGGAAGAGGAAACTCATGCACACTGACCAAAGTGAACATTTTTGAACAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp GAGCAATTTGATGTGGCTCCTTTCCCGTTTCCCTTTTaGCTATATGGAACAAAGAAGATGCAAGATACAAAA +
Preference number: 3 (lower is better)
Translates to: EQFDVAPFPFPF*LYGTKKMQDTK
Trigger: TTTTGTATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCACATCAAATTGCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp GATGCTTCTGATGAAAATAGGTACAGGGTCCTACAGTaGCAACTTTTAACCATGTCATGGATAAAGATCAAA +
Preference number: 3 (lower is better)
Translates to: DASDENRYRVLQ*QLLTMSWIKIK
Trigger: TTTGATCTTTATCCATGACATGGTTAAAAGTTGCCACTGTAGGACCCTGTACCTATTTTCATCAGAAGCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TCCTTTGTCCTTCAGTTTTATCCTGATGGTAAGAGTTaGAGAGTCATTGAGTTAACTGGCAAGGAATTTTCT +
Preference number: 3 (lower is better)
Translates to: SFVLQFYPDGKS*RVIELTGKEFS
Trigger: AGAAAATTCCTTGCCAGTTAACTCAATGACTCTCCAACTCTTACCATCAGGATAAAACTGAAGGACAAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CCA 72 bp TGTACATATTTATGGTGTGCATATCATGACCAAATCTaGGTCATAGGTTCTGGTTGGCAGGAATTGATTATG +
Preference number: 3 (lower is better)
Translates to: CTYLWCAYHDQI*VIGSGWQELIM
Trigger: CATAATCAATTCCTGCCAACCAGAACCTATGACCCAGATTTGGTCATGATATGCACACCATAAATATGTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAACTTTTAAATTCAGCTTaGAGTTCTGCATCCTGCCTG +
Preference number: 3 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKLLNSA*SSASCL
Trigger: CAGGCAGGATGCAGAACTCAAAGCTGAATTTAAAAG...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGTTTCCTGAGTCCTTCTaGACATGTGCTTTTCAAATA +
Preference number: 3 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKFPESF*TCAFQI
Trigger: TATTTGAAAAGCACATGTCAAGAAGGACTCAGGAAA...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp TGTGTTTGTATTAAAGCACACCGAAATTCTCTGAAATaGTTCATTCAGACAGGCATCAAACCCTATCAAATG +
Preference number: 3 (lower is better)
Translates to: CVCIKAHRNSLK*FIQTGIKPYQM
Trigger: CATTTGATAGGGTTTGATGCCTGTCTGAATGAAGCATTTCAGAGAATTTCGGTGTGCTTTAATACAAACACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAGAAAAAGCATTTTCCTaGACTATGAGATGGTCCTTG +
Preference number: 3 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKEKAFS*TMRWSL
Trigger: CAAGGACCATCTCATAGTCAAGGAAAATGCTTTTTC...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR TCA 72 bp AATCTTCTCAGCTATCACTCTGATTGCATTACAAAGTaGAATATTAAGGGTTTTAGTCTTGAGAGCTTCTGT +
Preference number: 3 (lower is better)
Translates to: NLLSYHSDCITK*NIKGFSLESFC
Trigger: ACAGAAGCTCTCAAGACTAAAACCCTTAATATTTCACTTTGTAATGCAATCAGAGTGATAGCTGAGAAGATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR GCA 72 bp AATGCTTCATTCAGACAGGCATCAAACCCTATCAAATaGTTCAGTGCAATTCTCTCAATAGAATACTTTAAA +
Preference number: 3 (lower is better)
Translates to: NASFRQASNPIK*FSAILSIEYFK
Trigger: TTTAAAGTATTCTATTGAGAGAATTGCACTGAAGCATTTGATAGGGTTTGATGCCTGTCTGAATGAAGCATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGGGAAGGTGGCTTGCTTaGGGGTGTTGGTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AQAASSQDCKEPGAQSREGRWLA*GCWSAR
Trigger: CCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCC...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGACCTCGGCAGTCTCTGTaGCCTTCGGGGCATCTGCAG +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGPRQSL*PSGHLQ
Trigger: CTGCAGATGCCCCGAAGGCCACAGAGACTGCCGAGG...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGGTCCCCAGCTGTAGGTaGCTTTGCTTGGGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: PPRAVHKLPLLKTARSLEVPSCR*LCLGFW
Trigger: CCAGAAGCCCAAGCAAAGTCACCTACAGCTGGGGAC...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS-3UTR CCA 90 bp ATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCGAGGAGCCAGGGCAGTaGGAGCCCCACAGTGATGTC +
Preference number: 4 (lower is better)
Translates to: IHPSSNLPRRDTCLPGLCEEPGQ*EPHSDV
Trigger: GACATCACTGTGGGGCTCCCACTGCCCTGGCTCCTC...GCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGATGCAGGACCCATGCCTaGCTGTCTCAGGGTAGACCT +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGCRTHA*LSQGRP
Trigger: AGGTCTACCCTGAGACAGCCAGGCATGGGTCCTGCA...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACGAAAAGTTCTGGGGCTaGCCCGCCTGCAGCCATGAA +
Preference number: 4 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHEKFWG*PACSHE
Trigger: TTCATGGCTGCAGGCGGGTCAGCCCCAGAACTTTTC...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGAAAAGTTCTGGGGCTaGCCCGCCTGCAGCCATGAA +
Preference number: 4 (lower is better)
Translates to: RAVHKLPLLKTARSLEPREKFWG*PACSHE
Trigger: TTCATGGCTGCAGGCGGGTCAGCCCCAGAACTTTTC...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGGAAGGTGGCTTGCTTaGGGGTGTTGGTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLGRWLA*GCWSAR
Trigger: CCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCGGAAGGTGGCTTGCTTaGGGGTGTTGGTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SPWESILPPTFQGGILASGRWLA*GCWSAR
Trigger: CCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCC...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGACTCTCCAACCTGGTGTaGCCACCACACCATCAGGTA +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGLSNLV*PPHHQV
Trigger: TACCTGATGGTGTGGTGGGCACACCAGGTTGGAGAG...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGCAGGAGCCTGGCTGTaGGGCTTTGGTGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTAGAWL*GFGGDP
Trigger: TGGATCTCCACCAAAGCCCCACAGCCAGGCTCCTGC...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGGACCCTGTGCTACTCTaGGGCCACTCATATCACTGG +
Preference number: 4 (lower is better)
Translates to: PPRAVHKLPLLKTARSLEDPVLL*GHSYHW
Trigger: CCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTC...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGTCCCCAGCTGTAGGTaGCTTTGCTTGGGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTVPSCR*LCLGFW
Trigger: CCAGAAGCCCAAGCAAAGTCACCTACAGCTGGGGAC...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS-3UTR TCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGCTTCCAGGAGGACGCTaGCCACCAGGAACACGAAGT +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWLPGGR*PPGTRS
Trigger: ACTTCGTGTTCCTGGTGGTCAGCGTCCTCCTGGAAG...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGCTTCCAGGAGGACGCTaGCCACCAGGAACACGAAGT +
Preference number: 4 (lower is better)
Translates to: GIHPSSNLPRRDTCLPGLLPGGR*PPGTRS
Trigger: ACTTCGTGTTCCTGGTGGTCAGCGTCCTCCTGGAAG...CAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGCAGGAGCCTGGCTGTaGGGCTTTGGTGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLAGAWL*GFGGDP
Trigger: TGGATCTCCACCAAAGCCCCACAGCCAGGCTCCTGC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGACCCTGTGCTACTCTaGGGCCACTCATATCACTGG +
Preference number: 4 (lower is better)
Translates to: RAVHKLPLLKTARSLEPRDPVLL*GHSYHW
Trigger: CCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTC...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCTCCGACCAGCGAGGAGTACCTGTCAGTGGTGATGGAGGTCCTCTTTGCCTCTCTCATGAGACTGTTGTaGAGGGAGGCAGAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: PPTSEEYLSVVMEVLFASLMRLL*REAELP
Trigger: CGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAG...AGAGGCAAAGAGGACCTCCATCACCACTGACAGGTACTCCTCGCTGGTCGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGAAACGATTAGGAAGGTaGCTTGCTTGCGGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: AQAASSQDCKEPGAQSREKRLGR*LACGCW
Trigger: CCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTT...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGGCTGCTGACAGTCACTaGGCTGAATCTGTGGATGAT +
Preference number: 4 (lower is better)
Translates to: AQAASSQDCKEPGAQSREAADSH*AESVDD
Trigger: ATCATCCACAGATTCAGCCCAGTGACTGTCAGCAGC...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCTGCAGCCAAATGGTaGCTCATGGGAACACCATTT +
Preference number: 4 (lower is better)
Translates to: PPRAVHKLPLLKTARSLEPAAKW*LMGTPF
Trigger: AAATGGTGTTCCCATGAGTCACCATTTGGCTGCAGG...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGCAAGGGTGTGTATCATaGGCTGGAAGATGCTATTCC +
Preference number: 4 (lower is better)
Translates to: AQAASSQDCKEPGAQSREQGCVS*AGRCYS
Trigger: GGAATAGCATCTTCCAGCTCATGATACACACCCTTG...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGCCACACCATCAGGTATaGGAAAACTGCAATCCAGGT +
Preference number: 4 (lower is better)
Translates to: AQAASSQDCKEPGAQSREPHHQV*ENCNPG
Trigger: ACCTGGATTGCAGTTTTCTCATACCTGATGGTGTGG...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGCTTCCAGGAGGACGCTaGCCACCAGGAACACGAAGT +
Preference number: 4 (lower is better)
Translates to: PWESILPPTFQGGILASQLPGGR*PPGTRS
Trigger: ACTTCGTGTTCCTGGTGGTCAGCGTCCTCCTGGAAG...CTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGATGGCTTCTCCTCTGTTaGTCTGAGAGTCTGTCTCAG +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGWLLLC*SESLSQ
Trigger: CTGAGACAGACTCTCAGAGCAACAGAGGAGAAGCCA...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACACGGAACCCACGATGGTaGCAATGCCGACATTGCTGT +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTRNPRW*QCRHCC
Trigger: ACAGCAATGTCGGCATTGGCACCATCGTGGGTTCCG...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGACCCTGTGCTACTCTaGGGCCACTCATATCACTGG +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTDPVLL*GHSYHW
Trigger: CCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTC...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGCTCATGAGACTGTTGTaGAGGGAGGCAGAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWLMRLL*REAELP
Trigger: CGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAG...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACGAGGAGCCAGGGCAGTaGGAGCCCCACAGTGATGTC +
Preference number: 4 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYEEPGQ*EPHSDV
Trigger: GACATCACTGTGGGGCTCCCACTGCCCTGGCTCCTC...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp TTGAGGACCTTGGGCCTCCACACAGCCTGTGATAGAGGAATGTCACTGACTCTGGAAAAGTTCTGGGGCTaGCCCGCCTGCAGCCATGAA +
Preference number: 4 (lower is better)
Translates to: LRTLGLHTACDRGMSLTLEKFWG*PACSHE
Trigger: TTCATGGCTGCAGGCGGGTCAGCCCCAGAACTTTTC...CAGAGTCAGTGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAAGATGCTATTCCTCATaGGACTGTTGTGGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: RAVHKLPLLKTARSLEPRRCYSS*DCCGGR
Trigger: CCTCCCTCCACAACAGTCTCATGAGGAATAGCATCT...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGGACGTCAGGTAAGGTaGTCCAGAGAGGGAACACAA +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTGRQVR*SREGTQ
Trigger: TTGTGTTCCCTCTCTGGATCACCTTACCTGACGTCC...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAACGGAACCCACGATGGTaGCAATGCCGACATTGCTGT +
Preference number: 4 (lower is better)
Translates to: ILPPTFQGGILASQGCAQRNPRW*QCRHCC
Trigger: ACAGCAATGTCGGCATTGGCACCATCGTGGGTTCCG...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCTCTCCAACCTGGTGTaGCCACCACACCATCAGGTA +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLLSNLV*PPHHQV
Trigger: TACCTGATGGTGTGGTGGGCACACCAGGTTGGAGAG...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAACTCTCCAACCTGGTGTaGCCACCACACCATCAGGTA +
Preference number: 4 (lower is better)
Translates to: ILPPTFQGGILASQGCAQLSNLV*PPHHQV
Trigger: TACCTGATGGTGTGGTGGGCACACCAGGTTGGAGAG...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACGCAGGAGCCTGGCTGTaGGGCTTTGGTGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYAGAWL*GFGGDP
Trigger: TGGATCTCCACCAAAGCCCCACAGCCAGGCTCCTGC...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGGCAGGAGCCTGGCTGTaGGGCTTTGGTGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLAGAWL*GFGGDP
Trigger: TGGATCTCCACCAAAGCCCCACAGCCAGGCTCCTGC...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGGACCCTGTGCTACTCTaGGGCCACTCATATCACTGG +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVDPVLL*GHSYHW
Trigger: CCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTC...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCTTTGCTTGGGCTTCTaGCACTGTCACCTTGATAAC +
Preference number: 4 (lower is better)
Translates to: PPRAVHKLPLLKTARSLELCLGF*HCHLDN
Trigger: GTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAG...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGCTCATGAGACTGTTGTaGAGGGAGGCAGAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: PWESILPPTFQGGILASQLMRLL*REAELP
Trigger: CGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAG...CTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTTTCAGGGTTGCCTAAGGCTATAGGAGAGATGACAGCAAGCAAGACTGGCTTGCCTCGGCAGTCTCTGTaGCCTTCGGGGCATCTGCAG +
Preference number: 4 (lower is better)
Translates to: VSGLPKAIGEMTASKTGLPRQSL*PSGHLQ
Trigger: CTGCAGATGCCCCGAAGGCCACAGAGACTGCCGAGG...CAAGCCAGTCTTGCTTGCTGTCATCTCTCCTATAGCCTTAGGCAACCCTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTaGCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGY*PPRAVHKLPLL
Trigger: GAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACACCTGCAGCCAAATGGTaGCTCATGGGAACACCATTT +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTPAAKW*LMGTPF
Trigger: AAATGGTGTTCCCATGAGTCACCATTTGGCTGCAGG...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCGAAAAGTTCTGGGGCTaGCCCGCCTGCAGCCATGAA +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCEKFWG*PACSHE
Trigger: TTCATGGCTGCAGGCGGGTCAGCCCCAGAACTTTTC...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGGTCCCCAGCTGTAGGTaGCTTTGCTTGGGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLVPSCR*LCLGFW
Trigger: CCAGAAGCCCAAGCAAAGTCACCTACAGCTGGGGAC...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS-3UTR TCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGAGATGCTATTCCTCATaGGACTGTTGTGGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWRCYSS*DCCGGR
Trigger: CCTCCCTCCACAACAGTCTCATGAGGAATAGCATCT...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGGACGTCAGGTAAGGTaGTCCAGAGAGGGAACACAA +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLGRQVR*SREGTQ
Trigger: TTGTGTTCCCTCTCTGGATCACCTTACCTGACGTCC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCGTAGGTGACTTTGCTTaGGCTTCTGGCACTGTCACC +
Preference number: 4 (lower is better)
Translates to: SPWESILPPTFQGGILASVGDFA*ASGTVT
Trigger: GGTGACAGTGCCAGAAGCCCAAGCAAAGTCACCTAC...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS-3UTR CCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAAAGTTCTTCAGCGAGTaGGTCAAGGGTGTGTATCAT +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGKFFSE*VKGVYH
Trigger: ATGATACACACCCTTGACCCACTCGCTGAAGAACTT...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044990.11
ENSMUST00000107157.9
CDS-3UTR CCA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGTCATTCTCATCCACTTaGCATTTCTTCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: AQAASSQDCKEPGAQSRESFSST*HFFLAI
Trigger: GATCGCCAAGAAGAAATGCCAAGTGGATGAGAATGA...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGG +
Preference number: 4 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHAASML*ERFPFW
Trigger: CCAGAATGGAAACCTCTCCCACAACATTGAAGCTGC...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAAACGATTAGGAAGGTaGCTTGCTTGCGGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTKRLGR*LACGCW
Trigger: CCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTT...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGAAACGATTAGGAAGGTaGCTTGCTTGCGGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: GIHPSSNLPRRDTCLPGLKRLGR*LACGCW
Trigger: CCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTT...CAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATAGAGGAGCCAGGGCAGTaGGAGCCCCACAGTGATGTC +
Preference number: 4 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYIEEPGQ*EPHSDV
Trigger: GACATCACTGTGGGGCTCCCACTGCCCTGGCTCCTC...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGGCTGCTGACAGTCACTaGGCTGAATCTGTGGATGAT +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWAADSH*AESVDD
Trigger: ATCATCCACAGATTCAGCCCAGTGACTGTCAGCAGC...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp ACATCTGTGATTGCACAGAGGTCTATGTCCTCCTTGTaGCGGCAACCACAGCCTCTGTGGACCCAAAGTGCC +
Preference number: 4 (lower is better)
Translates to: TSVIAQRSMSSL*RQPQPLWTQSA
Trigger: GGCACTTTGGGTCCACAGAGGCTGTGGTTGCCGCAACAAGGAGGACATAGACCTCTGTGCAATCACAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGTCTCCTCTGTTGCTCTaGGAGTCTGTCTCAGTAAAG +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWSPLLL*ESVSVK
Trigger: CTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGA...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCAGATGCTATTCCTCATaGGACTGTTGTGGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SPWESILPPTFQGGILASRCYSS*DCCGGR
Trigger: CCTCCCTCCACAACAGTCTCATGAGGAATAGCATCT...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGTGGCTTCTCCTCTGTTaGTCTGAGAGTCTGTCTCAG +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVWLLLC*SESLSQ
Trigger: CTGAGACAGACTCTCAGAGCAACAGAGGAGAAGCCA...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCGGAACCCACGATGGTaGCAATGCCGACATTGCTGT +
Preference number: 4 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLRNPRW*QCRHCC
Trigger: ACAGCAATGTCGGCATTGGCACCATCGTGGGTTCCG...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGGGAAAAGATGTCCTTTaGGTAGTCTCCCTGGGTGTG +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVGKDVL*VVSLGV
Trigger: CACACCCAGGGAGACTACCCAAAGGACATCTTTTCC...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGGAAAAGATGTCCTTTaGGTAGTCTCCCTGGGTGTG +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLGKDVL*VVSLGV
Trigger: CACACCCAGGGAGACTACCCAAAGGACATCTTTTCC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCGGAAAAGATGTCCTTTaGGTAGTCTCCCTGGGTGTG +
Preference number: 4 (lower is better)
Translates to: SPWESILPPTFQGGILASGKDVL*VVSLGV
Trigger: CACACCCAGGGAGACTACCCAAAGGACATCTTTTCC...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGCTTTGCTTGGGCTTCTaGCACTGTCACCTTGATAAC +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWLCLGF*HCHLDN
Trigger: GTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAG...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACCTCATGAGACTGTTGTaGAGGGAGGCAGAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYLMRLL*REAELP
Trigger: CGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAG...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGTGTGTATCATGAGCTaGAAGATGCTATTCCTCATG +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGVCIMS*KMLFLM
Trigger: CATGAGGAATAGCATCTTCCAGCTCATGATACACAC...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGG +
Preference number: 4 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTAASML*ERFPFW
Trigger: CCAGAATGGAAACCTCTCCCACAACATTGAAGCTGC...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGAGAGAGGGAACACAATaGGAAAAACGATTAGGAAGG +
Preference number: 4 (lower is better)
Translates to: PPRAVHKLPLLKTARSLEREGTQ*EKRLGR
Trigger: CCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCT...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGGCTGCTGACAGTCACTaGGCTGAATCTGTGGATGAT +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVAADSH*AESVDD
Trigger: ATCATCCACAGATTCAGCCCAGTGACTGTCAGCAGC...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AGCACATCTGTGATTGCACAGAGGTCTATGTCCTCCTaGTTGCGGCAACCACAGCCTCTGTGGACCCAAAGT +
Preference number: 4 (lower is better)
Translates to: STSVIAQRSMSS*LRQPQPLWTQS
Trigger: ACTTTGGGTCCACAGAGGCTGTGGTTGCCGCAACAAGGAGGACATAGACCTCTGTGCAATCACAGATGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCTCTCCTCTGTTGCTCTaGGAGTCTGTCTCAGTAAAG +
Preference number: 4 (lower is better)
Translates to: SPWESILPPTFQGGILASSPLLL*ESVSVK
Trigger: CTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGA...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCAAGGGTGTGTATCATaGGCTGGAAGATGCTATTCC +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLQGCVS*AGRCYS
Trigger: GGAATAGCATCTTCCAGCTCATGATACACACCCTTG...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCCACACCATCAGGTATaGGAAAACTGCAATCCAGGT +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVPHHQV*ENCNPG
Trigger: ACCTGGATTGCAGTTTTCTCATACCTGATGGTGTGG...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAACCACACCATCAGGTATaGGAAAACTGCAATCCAGGT +
Preference number: 4 (lower is better)
Translates to: ILPPTFQGGILASQGCAQPHHQV*ENCNPG
Trigger: ACCTGGATTGCAGTTTTCTCATACCTGATGGTGTGG...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAATCATTTCCACCTCTGTaGTTGTGCTGTTGGGGAGTT +
Preference number: 4 (lower is better)
Translates to: ILPPTFQGGILASQGCAQSFPPL*LCCWGV
Trigger: AACTCCCCAACAGCACAAGCACAGAGGTGGAAATGA...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCTCATTTCCACCTCTGTaGTTGTGCTGTTGGGGAGTT +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLSFPPL*LCCWGV
Trigger: AACTCCCCAACAGCACAAGCACAGAGGTGGAAATGA...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGGGAAGGTGGCTTGCTTaGGGGTGTTGGTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQGRWLA*GCWSAR
Trigger: CCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCC...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGCCAAATGGTGACTCATaGGAACACCATTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PWESILPPTFQGGILASQPNGDS*EHHFCR
Trigger: CCTGCAGAAATGGTGTTCCCATGAGTCACCATTTGG...CTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCTTTGCTTGGGCTTCTaGCACTGTCACCTTGATAAC +
Preference number: 4 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVLCLGF*HCHLDN
Trigger: GTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAG...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACGTAGGTGACTTTGCTTaGGCTTCTGGCACTGTCACC +
Preference number: 4 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYVGDFA*ASGTVT
Trigger: GGTGACAGTGCCAGAAGCCCAAGCAAAGTCACCTAC...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS-3UTR CCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGAAGTTCTTCAGCGAGTaGGTCAAGGGTGTGTATCAT +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWKFFSE*VKGVYH
Trigger: ATGATACACACCCTTGACCCACTCGCTGAAGAACTT...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044990.11
ENSMUST00000107157.9
CDS-3UTR CCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACTCATTCTCATCCACTTaGCATTTCTTCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHSFSST*HFFLAI
Trigger: GATCGCCAAGAAGAAATGCCAAGTGGATGAGAATGA...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGGAGAGGTTTCCATTCTaGACGGGTTCCGAAGCTTCG +
Preference number: 4 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLERFPF*TGSEAS
Trigger: CGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTC...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCGAGAGGTTTCCATTCTaGACGGGTTCCGAAGCTTCG +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCERFPF*TGSEAS
Trigger: CGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTC...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGG +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLAASML*ERFPFW
Trigger: CCAGAATGGAAACCTCTCCCACAACATTGAAGCTGC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGAGAGGGAACACAATaGGAAAAACGATTAGGAAGG +
Preference number: 4 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHREGTQ*EKRLGR
Trigger: CCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCT...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCCTCCCTTCAGCGAGTaGGTCAAGGGTGTGTATCAT +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCPPFSE*VKGVYH
Trigger: ATGATACACACCCTTGACCCACTCGCTGAAGGGAGG...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107155.8
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACGATCTTGTGGAGAATTaGAGCTTTTTCTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHDLVEN*SFFSEP
Trigger: AGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATC...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGATTCTTGGCGATCTTGTaGAGAATTGAAGCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGFLAIL*RIEAFS
Trigger: AGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAA...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGCTTGGCATTTCTTCTTaGCGATCTTGTGGAGAATTG +
Preference number: 4 (lower is better)
Translates to: GIHPSSNLPRRDTCLPGLLGISS*RSCGEL
Trigger: CAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAG...CAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGCCTGGAGCCCAGAGCCGGGAGGGACCATCCATGCTGTTGGTTTAAGATATGGCTTGGCATTTCTTCTTaGCGATCTTGTGGAGAATTG +
Preference number: 4 (lower is better)
Translates to: SLEPRAGRDHPCCWFKIWLGISS*RSCGEL
Trigger: CAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAG...CCATATCTTAAACCAACAGCATGGATGGTCCCTCCCGGCTCTGGGCTCCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp CCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTaGGAGCAATTTGATGTGGCTCCTTTCCCGTTTCCC +
Preference number: 4 (lower is better)
Translates to: PRINVGKHTHRV*EQFDVAPFPFP
Trigger: GGGAAACGGGAAAGGAGCCACATCAAATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AGAAGCTCTGATGGACGGTCTGACTTTTTGAGGACCTaGGGCCTCCACACAGCCTGTGATAGAGGAATGTCA +
Preference number: 4 (lower is better)
Translates to: RSSDGRSDFLRT*GLHTACDRGMS
Trigger: TGACATTCCTCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAAAAAGTCAGACCGTCCATCAGAGCTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCTCATTTCCACCTCTGTaGTTGTGCTGTTGGGGAGTT +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCSFPPL*LCCWGV
Trigger: AACTCCCCAACAGCACAAGCACAGAGGTGGAAATGA...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGTGTGTATCATGAGCTaGAAGATGCTATTCCTCATG +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLVCIMS*KMLFLM
Trigger: CATGAGGAATAGCATCTTCCAGCTCATGATACACAC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACTTCTTGGCGATCTTGTaGAGAATTGAAGCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHFLAIL*RIEAFS
Trigger: AGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAA...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGATTCTTGGCGATCTTGTaGAGAATTGAAGCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: RAVHKLPLLKTARSLEPRFLAIL*RIEAFS
Trigger: AGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAA...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTTTCAGGGTTGCCTAAGGCTATAGGAGAGATGACAGCAAGCAAGACTGGCTTGAAACGATTAGGAAGGTaGCTTGCTTGCGGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: VSGLPKAIGEMTASKTGLKRLGR*LACGCW
Trigger: CCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTT...CAAGCCAGTCTTGCTTGCTGTCATCTCTCCTATAGCCTTAGGCAACCCTGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCAGAGAGGGAACACAATaGGAAAAACGATTAGGAAGG +
Preference number: 4 (lower is better)
Translates to: SPWESILPPTFQGGILASREGTQ*EKRLGR
Trigger: CCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCT...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AACCAAAACTGCCCAACCCTCAGCAGACACCTCTCCTaGTCACCCAGTCTGAATGTCATCTGTCTTATGGAG +
Preference number: 4 (lower is better)
Translates to: NQNCPTLSRHLS*SPSLNVICLME
Trigger: CTCCATAAGACAGATGACATTCAGACTGGGTGACAAGGAGAGGTGTCTGCTGAGGGTTGGGCAGTTTTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp GAATTCAACAGAAGCTCTGATGGACGGTCTGACTTTTaGAGGACCTTGGGCCTCCACACAGCCTGTGATAGA +
Preference number: 4 (lower is better)
Translates to: EFNRSSDGRSDF*RTLGLHTACDR
Trigger: TCTATCACAGGCTGTGTGGAGGCCCAAGGTCCTCAAAAAGTCAGACCGTCCATCAGAGCTTCTGTTGAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCGATCTTGTGGAGAATTaGAGCTTTTTCTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLDLVEN*SFFSEP
Trigger: AGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATC...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp ATTTTCAGCACACATCTCAGCGCTCTTGGCAGGACTTaGGACTGTGTGGGAGCCCTTGGCATTAAAACATGT +
Preference number: 4 (lower is better)
Translates to: IFSTHLSALGRT*DCVGALGIKTC
Trigger: ACATGTTTTAATGCCAAGGGCTCCCACACAGTCCAAAGTCCTGCCAAGAGCGCTGAGATGTGTGCTGAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp GGGACACCATGGAAGTGGGAGCTGGCTTTGGGAATGTaGTCTTCTCAAAGCAACTTTTGTTCAGGACCACAA +
Preference number: 4 (lower is better)
Translates to: GTPWKWELALGM*SSQSNFCSGPQ
Trigger: TTGTGGTCCTGAACAAAAGTTGCTTTGAGAAGACAACATTCCCAAAGCCAGCTCCCACTTCCATGGTGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp CAGGGACACTGCTGCCCATTCCCTACATTCTGTGGGTaGAAGTGTTTGAATGGTATGCGAGTGTTTGTGTGT +
Preference number: 4 (lower is better)
Translates to: QGHCCPFPTFCG*KCLNGMRVFVC
Trigger: ACACACAAACACTCGCATACCATTCAAACACTTCAACCCACAGAATGTAGGGAATGGGCAGCAGTGTCCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGACTTCCAGGAGGACGCTaGCCACCAGGAACACGAAGT +
Preference number: 4 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRLPGGR*PPGTRS
Trigger: ACTTCGTGTTCCTGGTGGTCAGCGTCCTCCTGGAAG...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp CCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGTATTATAATGTCTCCTaGAGCCAAATGGTGACTCAT +
Preference number: 4 (lower is better)
Translates to: PWESILPPTFQGGILASQYYNVS*SQMVTH
Trigger: ATGAGTCACCATTTGGCTGCAGGAGACATTATAATA...CTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCGTGTGTATCATGAGCTaGAAGATGCTATTCCTCATG +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCVCIMS*KMLFLM
Trigger: CATGAGGAATAGCATCTTCCAGCTCATGATACACAC...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTTGGCATTTCTTCTTaGCGATCTTGTGGAGAATTG +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCLGISS*RSCGEL
Trigger: CAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAG...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGTCATTCTCATCCACTTaGCATTTCTTCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLSFSST*HFFLAI
Trigger: GATCGCCAAGAAGAAATGCCAAGTGGATGAGAATGA...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp ACCACTCCAAACAGCCTATGTACAGTTTGCCATCCGAATTCCAGTTATGTACAGGAGAGGTTTCCATTCTaGACGGGTTCCGAAGCTTCG +
Preference number: 4 (lower is better)
Translates to: TTPNSLCTVCHPNSSYVQERFPF*TGSEAS
Trigger: CGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTC...CTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCGATCTTGTGGAGAATTaGAGCTTTTTCTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCDLVEN*SFFSEP
Trigger: AGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATC...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGAGGCTGGAGGGAATTCTaGGAGCTTTGCTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGGWREF*ELCLGF
Trigger: GAAGCCCAAGCAAAGCTCTCAGAATTCCCTCCAGCC...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGGGAAAAGATGTCCTTTaGGTAGTCTCCCTGGGTGTG +
Preference number: 4 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVGKDVL*VVSLGV
Trigger: CACACCCAGGGAGACTACCCAAAGGACATCTTTTCC...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GTTTCAGGGTTGCCTAAGGCTATAGGAGAGATGACAGCAAGCAAGACTGGCTTGGTGTGTATCATGAGCTaGAAGATGCTATTCCTCATG +
Preference number: 4 (lower is better)
Translates to: VSGLPKAIGEMTASKTGLVCIMS*KMLFLM
Trigger: CATGAGGAATAGCATCTTCCAGCTCATGATACACAC...CAAGCCAGTCTTGCTTGCTGTCATCTCTCCTATAGCCTTAGGCAACCCTGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp TTTTCCTCCCAGGATCAATGTAGGCAAGCACACACACAGAGTCTTGGAGCAATTGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGG +
Preference number: 4 (lower is better)
Translates to: FSSQDQCRQAHTQSLGAIAASML*ERFPFW
Trigger: CCAGAATGGAAACCTCTCCCACAACATTGAAGCTGC...AATTGCTCCAAGACTCTGTGTGTGTGCTTGCCTACATTGATCCTGGGAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGGAGGAGCCAGGGCAGTaGGAGCCCCACAGTGATGTC +
Preference number: 4 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGEEPGQ*EPHSDV
Trigger: GACATCACTGTGGGGCTCCCACTGCCCTGGCTCCTC...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AAAGCCAGTTTCTTAGGCAGCAGACCTTTTTATTTCTaGTGTCCTCAGGGGGCCTCCACTTTGAAGTGCCTT +
Preference number: 4 (lower is better)
Translates to: KASFLGSRPFYF*CPQGASTLKCL
Trigger: AAGGCACTTCAAAGTGGAGGCCCCCTGAGGACACAAGAAATAAAAAGGTCTGCTGCCTAAGAAACTGGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp CCTTGGTCTGAACTAAGTTTCTCTCCTGTTTCAGGGTaGCCTAAGGCTATAGGAGAGATGACAGCAAGCAAG +
Preference number: 4 (lower is better)
Translates to: PWSELSFSPVSG*PKAIGEMTASK
Trigger: CTTGCTTGCTGTCATCTCTCCTATAGCCTTAGGCAACCCTGAAACAGGAGAGAAACTTAGTTCAGACCAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AACTCCCATTGGATCCGTATTCAAGTCTACTGGTCCTaGGAAGGTATTTGCACTACTGTGCACCTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: NSHWIRIQVYWS*EGICTTVHLCG
Trigger: ACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTTGAATACGGATCCAATGGGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp ACCCAAGCACACCACTCCAAACAGCCTATGTACAGTTaGCCATCCGAATTCCAGTTATGTACAGACAGAGTC +
Preference number: 4 (lower is better)
Translates to: TQAHHSKQPMYS*PSEFQLCTDRV
Trigger: GACTCTGTCTGTACATAACTGGAATTCGGATGGCAAACTGTACATAGGCTGTTTGGAGTGGTGTGCTTGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATAGGACGTCAGGTAAGGTaGTCCAGAGAGGGAACACAA +
Preference number: 4 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKIGRQVR*SREGTQ
Trigger: TTGTGTTCCCTCTCTGGATCACCTTACCTGACGTCC...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTATTATAATGTCTCCTaGAGCCAAATGGTGACTCAT +
Preference number: 4 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYYYNVS*SQMVTH
Trigger: ATGAGTCACCATTTGGCTGCAGGAGACATTATAATA...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGTCATTTCCACCTCTGTaGTTGTGCTGTTGGGGAGTT +
Preference number: 4 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVSFPPL*LCCWGV
Trigger: AACTCCCCAACAGCACAAGCACAGAGGTGGAAATGA...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGTTCTTGGCGATCTTGTaGAGAATTGAAGCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLFLAIL*RIEAFS
Trigger: AGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAA...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGACCTCCCTTCAGCGAGTaGGTCAAGGGTGTGTATCAT +
Preference number: 4 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRPPFSE*VKGVYH
Trigger: ATGATACACACCCTTGACCCACTCGCTGAAGGGAGG...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGATCTGAGAGCTTTGCTTaGGCTTCTGGCACTGTCACC +
Preference number: 4 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGSESFA*ASGTVT
Trigger: GGTGACAGTGCCAGAAGCCCAAGCAAAGCTCTCAGA...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
3UTR CAA 72 bp TGCAGTATTGGGTTACCAGACCTTTTAAATTCAGCTTaGAGTTCTGCATCCTGCCTGCGTCCCTGTGTTAAG +
Preference number: 4 (lower is better)
Translates to: CSIGLPDLLNSA*SSASCLRPCVK
Trigger: CTTAACACAGGGACGCAGGCAGGATGCAGAACTCAAAGCTGAATTTAAAAGGTCTGGTAACCCAATACTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp GCAACCCAGATACTTGCCCCATACAAAGTCCAACCCTaGATAAATGGGGCATGGATTTCTCTTTCACCATTG +
Preference number: 4 (lower is better)
Translates to: ATQILAPYKVQP*INGAWISLSPL
Trigger: CAATGGTGAAAGAGAAATCCATGCCCCATTTATCAAGGGTTGGACTTTGTATGGGGCAAGTATCTGGGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp TCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTaGGAGTCCCAATCTTTCTGGGTGCAAGGAAGAATA +
Preference number: 4 (lower is better)
Translates to: SGTDLLSVTCYL*ESQSFWVQGRI
Trigger: TATTCTTCCTTGCACCCAGAAAGATTGGGACTCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp TTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTaGTTGGAGTCCCAATCTTTCTGGGTGCAAGGAAGA +
Preference number: 4 (lower is better)
Translates to: FSGTDLLSVTCY*LESQSFWVQGR
Trigger: TCTTCCTTGCACCCAGAAAGATTGGGACTCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp GAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTaGCTACTTGTTGGAGTCCCAATCTTTCTGGGTGCA +
Preference number: 4 (lower is better)
Translates to: ECFFWNRPAVCN*LLVGVPIFLGA
Trigger: TGCACCCAGAAAGATTGGGACTCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AGCCTGGCTAGGTCATGCATTTGTTTATCCTTTTGTTaGTCCTTTGTGTGGCCCTTTCTCCCACCCTTTCTT +
Preference number: 4 (lower is better)
Translates to: SLARSCICLSFC*SFVWPFLPPFL
Trigger: AAGAAAGGGTGGGAGAAAGGGCCACACAAAGGACAAACAAAAGGATAAACAAATGCATGACCTAGCCAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp GATCCGTATTCAAGTCTACTGGTCCTTGGAAGGTATTaGCACTACTGTGCACCTCTGTGGTTACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: DPYSSLLVLGRY*HYCAPLWLQIL
Trigger: CAGAATCTGTAACCACAGAGGTGCACAGTAGTGCAAATACCTTCCAAGGACCAGTAGACTTGAATACGGATC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp ACAAAGAAGATGCAAGATACAAAAAGAGCTGCAACCTaGACCTCACTGGCCCTCTATGATAATGCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: TKKMQDTKRAAT*TSLALYDNAVP
Trigger: GGGCACAGCATTATCATAGAGGGCCAGTGAGGTCAAGGTTGCAGCTCTTTTTGTATCTTGCATCTTCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGACCTGCAGCCAAATGGTaGCTCATGGGAACACCATTT +
Preference number: 4 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRPAAKW*LMGTPF
Trigger: AAATGGTGTTCCCATGAGTCACCATTTGGCTGCAGG...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp AATGTAATTTGCTGCCAGCCAGTCCCATTTTCTACTGAAATAAACCTTGTAGAACTCTCCAACCTGGTGTaGCCACCACACCATCAGGTA +
Preference number: 4 (lower is better)
Translates to: NVICCQPVPFSTEINLVELSNLV*PPHHQV
Trigger: TACCTGATGGTGTGGTGGGCACACCAGGTTGGAGAG...TTCTACAAGGTTTATTTCAGTAGAAAATGGGACTGGCTGGCAGCAAATTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp TGCTGCCCATTCCCTACATTCTGTGGGTTGAAGTGTTaGAATGGTATGCGAGTGTTTGTGTGTATATGTGCA +
Preference number: 4 (lower is better)
Translates to: CCPFPTFCGLKC*NGMRVFVCICA
Trigger: TGCACATATACACACAAACACTCGCATACCATTCAAACACTTCAACCCACAGAATGTAGGGAATGGGCAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp TGGCTCCTTTCCCGTTTCCCTTTTGACTATATGGAACAAAGAAGATGCAAGATACTTTGCTTGGGCTTCTaGCACTGTCACCTTGATAAC +
Preference number: 4 (lower is better)
Translates to: WLLSRFPFDYMEQRRCKILCLGF*HCHLDN
Trigger: GTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAG...TATCTTGCATCTTCTTTGTTCCATATAGTCAAAAGGGAAACGGGAAAGGAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp AAGAGACAGCGGTCTCATATTCTTCTCCCATGCCTCTaGTTGCATATTTTTACTTCTCTGAAAGCAACAGGG +
Preference number: 4 (lower is better)
Translates to: KRQRSHILLPCL*LHIFTSLKATG
Trigger: CCCTGTTGCTTTCAGAGAAGTAAAAATATGCAACAAGAGGCATGGGAGAAGAATATGAGACCGCTGTCTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GATGCCCCTCTTCAAATAGGTACTATAAATATACTAGAGCTATCCCTGAAAAGAAGATGCTATTCCTCATaGGACTGTTGTGGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: DAPLQIGTINILELSLKRRCYSS*DCCGGR
Trigger: CCTCCCTCCACAACAGTCTCATGAGGAATAGCATCT...TCTTTTCAGGGATAGCTCTAGTATATTTATAGTACCTATTTGAAGAGGGGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp ATTATGTTGAAACTGCAACCAAAGAGAAAATTCCCATCCCAAAACAGCAGGAAGCAAGGGTGTGTATCATaGGCTGGAAGATGCTATTCC +
Preference number: 4 (lower is better)
Translates to: IMLKLQPKRKFPSQNSRKQGCVS*AGRCYS
Trigger: GGAATAGCATCTTCCAGCTCATGATACACACCCTTG...CTTCCTGCTGTTTTGGGATGGGAATTTTCTCTTTGGTTGCAGTTTCAACATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR GCA 90 bp ATATTGTCTGTCAGCAGACCCAGTAGACTTGCACACACTGCCATGCAAGAAAGATATTATAATGTCTCCTaGAGCCAAATGGTGACTCAT +
Preference number: 4 (lower is better)
Translates to: ILSVSRPSRLAHTAMQERYYNVS*SQMVTH
Trigger: ATGAGTCACCATTTGGCTGCAGGAGACATTATAATA...TCTTTCTTGCATGGCAGTGTGTGCAAGTCTACTGGGTCTGCTGACAGACAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAGTAGGTGACTTTGCTTaGGCTTCTGGCACTGTCACC +
Preference number: 4 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKVGDFA*ASGTVT
Trigger: GGTGACAGTGCCAGAAGCCCAAGCAAAGTCACCTAC...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107157.9
CDS-3UTR CCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGATCGAAACACAGACTCTaGCAGTCAGGGTCATTTGTT +
Preference number: 4 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGSKHRL*QSGSFV
Trigger: AACAAATGACCCTGACTGCCAGAGTCTGTGTTTCGA...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
3UTR CAA 72 bp TTTGTATTTATATGTATGCATAGCCTCTGTCCTCTATaGTGTCATCACAATGAACGTACCTCCGACCAGCGA +
Preference number: 4 (lower is better)
Translates to: FVFICMHSLCPL*CHHNERTSDQR
Trigger: TCGCTGGTCGGAGGTACGTTCATTGTGATGACACAATAGAGGACAGAGGCTATGCATACATATAAATACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp ACCATTGAAATCCCAACTCTGCATTGTTGGAGAGACTaGAAAGCCAGTTTCTTAGGCAGCAGACCTTTTTAT +
Preference number: 4 (lower is better)
Translates to: TIEIPTLHCWRD*KASFLGSRPFY
Trigger: ATAAAAAGGTCTGCTGCCTAAGAAACTGGCTTTCAAGTCTCTCCAACAATGCAGAGTTGGGATTTCAATGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp GATGCCCCTCTTCAAATAGGTACTATAAATATACTAGAGCTATCCCTGAAAAGACAAGGGTGTGTATCATaGGCTGGAAGATGCTATTCC +
Preference number: 4 (lower is better)
Translates to: DAPLQIGTINILELSLKRQGCVS*AGRCYS
Trigger: GGAATAGCATCTTCCAGCTCATGATACACACCCTTG...TCTTTTCAGGGATAGCTCTAGTATATTTATAGTACCTATTTGAAGAGGGGCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp AATGTAATTTGCTGCCAGCCAGTCCCATTTTCTACTGAAATAAACCTTGTAGAACCACACCATCAGGTATaGGAAAACTGCAATCCAGGT +
Preference number: 4 (lower is better)
Translates to: NVICCQPVPFSTEINLVEPHHQV*ENCNPG
Trigger: ACCTGGATTGCAGTTTTCTCATACCTGATGGTGTGG...TTCTACAAGGTTTATTTCAGTAGAAAATGGGACTGGCTGGCAGCAAATTACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGATCATTCTCATCCACTTaGCATTTCTTCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGSFSST*HFFLAI
Trigger: GATCGCCAAGAAGAAATGCCAAGTGGATGAGAATGA...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGAAGAGAGGGAACACAATaGGAAAAACGATTAGGAAGG +
Preference number: 4 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGREGTQ*EKRLGR
Trigger: CCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCT...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR TCA 90 bp ATAGAATGCTTTTTCTGGAACAGACCTGCTGTCTGTAACTTGCTACTTGTTGGAGATCTTGTGGAGAATTaGAGCTTTTTCTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: IECFFWNRPAVCNLLLVGDLVEN*SFFSEP
Trigger: AGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATC...TCCAACAAGTAGCAAGTTACAGACAGCAGGTCTGTTCCAGAAAAAGCATTCTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
3UTR CAA 72 bp TCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATaGATGGGGTTGTTCTATTTAATACTGGGGCTTACA +
Preference number: 4 (lower is better)
Translates to: SLGQVVCSSLRL*MGLFYLILGLT
Trigger: TGTAAGCCCCAGTATTAAATAGAACAACCCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGAGGAAGGTGGCTTGCTaGCGGGTGTTGGTCGGCCAG +
Preference number: 5 (lower is better)
Translates to: PPRAVHKLPLLKTARSLERKVAC*RVLVGQ
Trigger: CTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCT...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp GTGGCTTGCTTGCGGGTGTTGGTCGGCCAGGACAAGCTGAGGGGCTaGTCATCTTCTTCCTCGGCAGTCGGGGCATCTGCAGCTTCAATG +
Preference number: 5 (lower is better)
Translates to: VACLRVLVGQDKLRG*SSSSSAVGASAASM
Trigger: CATTGAAGCTGCAGATGCCCCGACTGCCGAGGAAGAAGATGACCAGCCCCTCAGCTTGTCCTGGCCGACCAACACCCGCAAGCAAGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
CDS-3UTR CAA 90 bp CCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAGGAAGGTGGCTTGCTaGCGGGTGTTGGTCGGCCAG +
Preference number: 5 (lower is better)
Translates to: PSFLQPSKEGYLPPRAVHRKVAC*RVLVGQ
Trigger: CTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCT...GTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp TTCCTCATGAGACTGTTGTGGAGGGAGGCAGAGCTTCCGCCTCGTTaGAGGCGTGGCTTCGACGGTAAAGTTGGCCCATCCTTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: FLMRLLWREAELPPR*RRGFDGKVGPSLSP
Trigger: TGGGGACAAGGATGGGCCAACTTTACCGTCGAAGCCACGCCTCCAACGAGGCGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS-3UTR CAA 90 bp GCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGAGCCGGGAGTTGTTCATCCGCCATTaGCAGAGGGCGATGGAGAGA +
Preference number: 5 (lower is better)
Translates to: AQAASSQDCKEPGAQSRELFIRH*QRAMER
Trigger: TCTCTCCATCGCCCTCTGCAAATGGCGGATGAACAA...CTCCCGGCTCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGGGGAAAAGATGTCCTTaGGGTAGTCTCCCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: PPRAVHKLPLLKTARSLEGKRCP*GSLPGC
Trigger: ACACCCAGGGAGACTACCCAAAGGACATCTTTTCCC...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGGGAAAAGATGTCCTTaGGGTAGTCTCCCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGGKRCP*GSLPGC
Trigger: ACACCCAGGGAGACTACCCAAAGGACATCTTTTCCC...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGTTCCTCATGAGACTGTaGTGGAGGGAGGCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: PPRAVHKLPLLKTARSLEFLMRL*WREAEL
Trigger: AAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAA...CTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp TCGGCAGTCTCTGTGGCCTTCGGGGCATCTGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGGACGGGTTCCGAAGCTTCGCTCGAT +
Preference number: 5 (lower is better)
Translates to: SAVSVAFGASAASML*ERFPFWTGSEASLD
Trigger: ATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGATGCCCCGAAGGCCACAGAGACTGCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGATTCCTCATGAGACTGTaGTGGAGGGAGGCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: RAVHKLPLLKTARSLEPRFLMRL*WREAEL
Trigger: AAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAA...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGATTTCCACCTCTGTGCTaGTGCTGTTGGGGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGFPPLC*CCWGVQ
Trigger: TTGAACTCCCCAACAGCACAAGCACAGAGGTGGAAA...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCAGGAAGGTGGCTTGCTaGCGGGTGTTGGTCGGCCAG +
Preference number: 5 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCRKVAC*RVLVGQ
Trigger: CTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCT...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGATTGTTCATCCGCCATTaGCAGAGGGCGATGGAGAGA +
Preference number: 5 (lower is better)
Translates to: RAVHKLPLLKTARSLEPRLFIRH*QRAMER
Trigger: TCTCTCCATCGCCCTCTGCAAATGGCGGATGAACAA...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS GCA 90 bp ATCCAGAGAGGGAACACAATGGGAAAAACGATTAGGAAGGTGGCTTaGTTGCGGGTGTTGGTCGGCCAGGACAAGCTGAGGGGCTGGTCA +
Preference number: 5 (lower is better)
Translates to: IQRGNTMGKTIRKVA*LRVLVGQDKLRGWS
Trigger: TGACCAGCCCCTCAGCTTGTCCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCTGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp GTGTGTATCATGAGCTGGAAGATGCTATTCCTCATGAGACTGTTGTaGAGGGAGGCAGAGCTTCCGCCTCGTTGGAGGCGTGGCTTCGAC +
Preference number: 5 (lower is better)
Translates to: VCIMSWKMLFLMRLL*REAELPPRWRRGFD
Trigger: GTCGAAGCCACGCCTCCAACGAGGCGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTCATGATACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CCA 90 bp GTCGGGGCATCTGCAGCTTCAATGTTGTGGGAGAGGTTTCCATTCTaGACGGGTTCCGAAGCTTCGCTCGATGGCGTCATTTCCACCTCT +
Preference number: 5 (lower is better)
Translates to: VGASAASMLWERFPF*TGSEASLDGVISTS
Trigger: AGAGGTGGAAATGACGCCATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGATGCCCCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
CDS-3UTR CAA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAAAAGTTGGCCCATCCTaGTCCCCAGCTGTAGGTGAC +
Preference number: 5 (lower is better)
Translates to: ILPPTFQGGILASQGCAQKVGPS*SPAVGD
Trigger: GTCACCTACAGCTGGGGACAAGGATGGGCCAACTTT...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACATTGTTCATCCGCCATTaGCAGAGGGCGATGGAGAGA +
Preference number: 5 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTLFIRH*QRAMER
Trigger: TCTCTCCATCGCCCTCTGCAAATGGCGGATGAACAA...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp TCATCTTCTTCCTCGGCAGTCGGGGCATCTGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGGACGGGTTCCGAAGCTTCGCTCGAT +
Preference number: 5 (lower is better)
Translates to: SSSSSAVGASAASML*ERFPFWTGSEASLD
Trigger: ATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGATGCCCCGACTGCCGAGGAAGAAGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
CDS CCA 90 bp TTCGGGGCATCTGCAGCTTCAATGTTGTGGGAGAGGTTTCCATTCTaGACGGGTTCCGAAGCTTCGCTCGATGGCGTCATTTCCACCTCT +
Preference number: 5 (lower is better)
Translates to: FGASAASMLWERFPF*TGSEASLDGVISTS
Trigger: AGAGGTGGAAATGACGCCATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGATGCCCCGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp CTTTCAGCGGCTCTCCATTCACATTCGTTATGCAGGACCCATGCCTaGCTGTCTCAGGGTAGACCTCGAAACACAGACTCTGGCAGTCAG +
Preference number: 5 (lower is better)
Translates to: LSAALHSHSLCRTHA*LSQGRPRNTDSGSQ
Trigger: CTGACTGCCAGAGTCTGTGTTTCGAGGTCTACCCTGAGACAGCCAGGCATGGGTCCTGCATAACGAATGTGAATGGAGAGCCGCTGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS-3UTR CAA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAGGGAAAAGATGTCCTTaGGGTAGTCTCCCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: ILPPTFQGGILASQGCAQGKRCP*GSLPGC
Trigger: ACACCCAGGGAGACTACCCAAAGGACATCTTTTCCC...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGACACCCATCTCTCTACTaGGACGTTGAACTTCATGAA +
Preference number: 5 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGHPSLY*DVELHE
Trigger: TTCATGAAGTTCAACGTCCAAGTAGAGAGATGGGTG...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGTTCCTCATGAGACTGTaGTGGAGGGAGGCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVFLMRL*WREAEL
Trigger: AAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAA...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAATTCCTCATGAGACTGTaGTGGAGGGAGGCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: ILPPTFQGGILASQGCAQFLMRL*WREAEL
Trigger: AAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAA...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTTTCCACCTCTGTGCTaGTGCTGTTGGGGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: GIHPSSNLPRRDTCLPGLFPPLC*CCWGVQ
Trigger: TTGAACTCCCCAACAGCACAAGCACAGAGGTGGAAA...CAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp CTGAACCTCCCTTCAGCGAGTGGGTCAAGGGTGTGTATCATGAGCTaGAAGATGCTATTCCTCATGAGACTGTTGTGGAGGGAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: LNLPSASGSRVCIMS*KMLFLMRLLWREAE
Trigger: CTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTCATGATACACACCCTTGACCCACTCGCTGAAGGGAGGTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107155.8
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACAAAGTTGGCCCATCCTaGTCCCCAGCTGTAGGTGAC +
Preference number: 5 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYKVGPS*SPAVGD
Trigger: GTCACCTACAGCTGGGGACAAGGATGGGCCAACTTT...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GCCTCCCAGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAACTTGGCATTTCTTCTaGGCGATCTTGTGGAGAATT +
Preference number: 5 (lower is better)
Translates to: ASQGCAQAASSQDCKEPGTWHFF*AILWRI
Trigger: AATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGT...TCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCTGGGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGTTTCCACCTCTGTGCTaGTGCTGTTGGGGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: NPSFLQPSKEGYLPPRAVFPPLC*CCWGVQ
Trigger: TTGAACTCCCCAACAGCACAAGCACAGAGGTGGAAA...CACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGTTTCCACCTCTGTGCTaGTGCTGTTGGGGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: PWESILPPTFQGGILASQFPPLC*CCWGVQ
Trigger: TTGAACTCCCCAACAGCACAAGCACAGAGGTGGAAA...CTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCTCTGCAGCTTCAATGTaGTGGGAGAGGTTTCCATTC +
Preference number: 5 (lower is better)
Translates to: IHPSSNLPRRDTCLPGLCSAASM*WERFPF
Trigger: GAATGGAAACCTCTCCCACAACATTGAAGCTGCAGA...GCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGGGGAAAAGATGTCCTTaGGGTAGTCTCCCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: ECPHGNPSFLQPSKEGYLGKRCP*GSLPGC
Trigger: ACACCCAGGGAGACTACCCAAAGGACATCTTTTCCC...CAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS TCA 90 bp TTCTCCTCTGTTGCTCTGAGAGTCTGTCTCAGTAAAGGCACTGATTaGAAATGGGACAGTGCTCACAGCTACCAGGCCCATGACAAGGCC +
Preference number: 5 (lower is better)
Translates to: FSSVALRVCLSKGTD*KWDSAHSYQAHDKA
Trigger: GGCCTTGTCATGGGCCTGGTAGCTGTGAGCACTGTCCCATTTTCAATCAGTGCCTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS GCA 90 bp TGTTCTGGGTCTTTTCTTTCAGCGGCTCTCCATTCACATTCGTTATaGAGGACCCATGCCTGGCTGTCTCAGGGTAGACCTCGAAACACA +
Preference number: 5 (lower is better)
Translates to: CSGSFLSAALHSHSL*RTHAWLSQGRPRNT
Trigger: TGTGTTTCGAGGTCTACCCTGAGACAGCCAGGCATGGGTCCTGCATAACGAATGTGAATGGAGAGCCGCTGAAAGAAAAGACCCAGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CCA 90 bp GATCCAAGTTCTTCAGCGAGTGGGTCAAGGGTGTGTATCATGAGCTaGAAGATGCTATTCCTCATGAGACTGTTGTGGAGGGAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: DPSSSASGSRVCIMS*KMLFLMRLLWREAE
Trigger: CTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTCATGATACACACCCTTGACCCACTCGCTGAAGAACTTGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107157.9
ENSMUST00000146815.2
CDS-3UTR CAA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACACTCTCTACTTGGACGTaGAACTTCATGAAAACCACA +
Preference number: 5 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTLSTWT*NFMKTT
Trigger: TGTGGTTTTCATGAAGTTCAACGTCCAAGTAGAGAG...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGCACCCATCTCTCTACTaGGACGTTGAACTTCATGAA +
Preference number: 5 (lower is better)
Translates to: PWESILPPTFQGGILASQHPSLY*DVELHE
Trigger: TTCATGAAGTTCAACGTCCAAGTAGAGAGATGGGTG...CTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCACCCATCTCTCTACTaGGACGTTGAACTTCATGAA +
Preference number: 5 (lower is better)
Translates to: VPMGIHPSSNLPRRDTCLHPSLY*DVELHE
Trigger: TTCATGAAGTTCAACGTCCAAGTAGAGAGATGGGTG...GAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAATTGCGAGATATCATTaGCTTCACCCATCTCTCTAC +
Preference number: 5 (lower is better)
Translates to: HPSSNLPRRDTCLPGLCTIARYH*LHPSLY
Trigger: GTAGAGAGATGGGTGAAGCAAATGATATCTCGCAAT...TGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCATTGCGAGATATCATTaGCTTCACCCATCTCTCTAC +
Preference number: 5 (lower is better)
Translates to: IHPSSNLPRRDTCLPGLCIARYH*LHPSLY
Trigger: GTAGAGAGATGGGTGAAGCAAATGATATCTCGCAAT...GCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AGGGCTGTGCACAAGCTGCCTCTTCTCAAGACTGCAAGGAGCCTGGAGCCCAGATTCTTCTTGGCGATCTaGTGGAGAATTGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: RAVHKLPLLKTARSLEPRFFLAI*WRIEAF
Trigger: AAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAA...TCTGGGCTCCAGGCTCCTTGCAGTCTTGAGAAGAGGCAGCTTGTGCACAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS TCA 90 bp GCTACTCTGGGGCCACTCATATCACTGGCTTCTCCTCTGTTGCTCTaGGAGTCTGTCTCAGTAAAGGCACTGATTGAAAATGGGACAGTG +
Preference number: 5 (lower is better)
Translates to: ATLGPLISLASPLLL*ESVSVKALIENGTV
Trigger: CACTGTCCCATTTTCAATCAGTGCCTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGAAGCCAGTGATATGAGTGGCCCCAGAGTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAATTGCGAGATATCATTaGCTTCACCCATCTCTCTAC +
Preference number: 5 (lower is better)
Translates to: ILPPTFQGGILASQGCAQIARYH*LHPSLY
Trigger: GTAGAGAGATGGGTGAAGCAAATGATATCTCGCAAT...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp TCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCATTGCGAGATATCATTaGCTTCACCCATCTCTCTAC +
Preference number: 5 (lower is better)
Translates to: SPWESILPPTFQGGILASIARYH*LHPSLY
Trigger: GTAGAGAGATGGGTGAAGCAAATGATATCTCGCAAT...GGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAATCTGGCACTGTCACCTaGATAACATTATTGCGAGAT +
Preference number: 5 (lower is better)
Translates to: ILPPTFQGGILASQGCAQSGTVT*ITLLRD
Trigger: ATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGA...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCCTCCCAGGGCTGTGCACAAACTTGGCATTTCTTCTaGGCGATCTTGTGGAGAATT +
Preference number: 5 (lower is better)
Translates to: ILPPTFQGGILASQGCAQTWHFF*AILWRI
Trigger: AATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGT...TTGTGCACAGCCCTGGGAGGCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AGTGAATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTCTGCAGCTTCAATGTaGTGGGAGAGGTTTCCATTC +
Preference number: 5 (lower is better)
Translates to: SECPHGNPSFLQPSKEGYSAASM*WERFPF
Trigger: GAATGGAAACCTCTCCCACAACATTGAAGCTGCAGA...GTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATAGGAATTCTGAGAGCTTaGCTTGGGCTTCTGGCACTG +
Preference number: 5 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYIGILRA*LGLLAL
Trigger: CAGTGCCAGAAGCCCAAGCAAAGCTCTCAGAATTCC...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
CDS CCA 90 bp CATTTAAGTCTAAGAGAGTTCTTTGACGGTGACCCTGTGCTACTCTaGGGCCACTCATATCACTGGCTTCTCCTCTGTTGCTCTGAGAGT +
Preference number: 5 (lower is better)
Translates to: HLSLREFFDGDPVLL*GHSYHWLLLCCSES
Trigger: ACTCTCAGAGCAACAGAGGAGAAGCCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTCACCGTCAAAGAACTCTCTTAGACTTAAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 90 bp GGTAAAGTTGGCCCATCCTTGTCCCCAGCTGTAGGTGACTTTGCTTaGGCTTCTGGCACTGTCACCTTGATAACATTATTGCGAGATATC +
Preference number: 5 (lower is better)
Translates to: GKVGPSLSPAVGDFA*ASGTVTLITLLRDI
Trigger: GATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAGTCACCTACAGCTGGGGACAAGGATGGGCCAACTTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS-3UTR CAA 90 bp TCCTCTTCCTTGACTGTCAAATCTGATGCTCTTTGCTTTGGGATTCCAAGTGTGAAAGTTGGCCCATCCTaGTCCCCAGCTGTAGGTGAC +
Preference number: 5 (lower is better)
Translates to: SSSLTVKSDALCFGIPSVKVGPS*SPAVGD
Trigger: GTCACCTACAGCTGGGGACAAGGATGGGCCAACTTT...CACACTTGGAATCCCAAAGCAAAGAGCATCAGATTTGACAGTCAAGGAAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCTCTGGCACTGTCACCTaGATAACATTATTGCGAGAT +
Preference number: 5 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCSGTVT*ITLLRD
Trigger: ATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGA...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCACTTGGCATTTCTTCTaGGCGATCTTGTGGAGAATT +
Preference number: 5 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCTWHFF*AILWRI
Trigger: AATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGT...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATTGGCGGTGTAGGGGAGTTGGCCAACTCTCTCTGGTCAGGAGTAGATATATATCTGCAGCTTCAATGTaGTGGGAGAGGTTTCCATTC +
Preference number: 5 (lower is better)
Translates to: NWRCRGVGQLSLVRSRYISAASM*WERFPF
Trigger: GAATGGAAACCTCTCCCACAACATTGAAGCTGCAGA...TATATATCTACTCCTGACCAGAGAGAGTTGGCCAACTCCCCTACACCGCCAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATGTAATTTGCTGCCAGCCAGTCCCATTTTCTACTGAAATAAACCTTGTAGAAAGGAAGGTGGCTTGCTaGCGGGTGTTGGTCGGCCAG +
Preference number: 5 (lower is better)
Translates to: NVICCQPVPFSTEINLVERKVAC*RVLVGQ
Trigger: CTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCT...TTCTACAAGGTTTATTTCAGTAGAAAATGGGACTGGCTGGCAGCAAATTACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GGGGGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAGTTGGCCCATCCTaGTCCCCAGCTGTAGGTGAC +
Preference number: 5 (lower is better)
Translates to: GGKGLELLNIYTVTIAGRKVGPS*SPAVGD
Trigger: GTCACCTACAGCTGGGGACAAGGATGGGCCAACTTT...TCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATGTCCCCATGGGAATCCATCCTTCCTCCAACCTTCCAAGGAGGGATACTTGCTTCTTCTTGGCGATCTaGTGGAGAATTGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: NVPMGIHPSSNLPRRDTCFFLAI*WRIEAF
Trigger: AAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAA...GCAAGTATCCCTCCTTGGAAGGTTGGAGGAAGGATGGATTCCCATGGGGACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp ATATTGTCTGTCAGCAGACCCAGTAGACTTGCACACACTGCCATGCAAGAAAGACACCCATCTCTCTACTaGGACGTTGAACTTCATGAA +
Preference number: 5 (lower is better)
Translates to: ILSVSRPSRLAHTAMQERHPSLY*DVELHE
Trigger: TTCATGAAGTTCAACGTCCAAGTAGAGAGATGGGTG...TCTTTCTTGCATGGCAGTGTGTGCAAGTCTACTGGGTCTGCTGACAGACAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS GCA 90 bp GCTTCTGGCACTGTCACCTTGATAACATTATTGCGAGATATCATTTaGTTCACCCATCTCTCTACTTGGACGTTGAACTTCATGAAAACC +
Preference number: 5 (lower is better)
Translates to: ASGTVTLITLLRDII*FTHLSTWTLNFMKT
Trigger: GGTTTTCATGAAGTTCAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp CAGATATTTTTCTTTAGGACAAGTTGTCTGTTCAAGCCTAAGATTATTGATGGGTCTGCAGCTTCAATGTaGTGGGAGAGGTTTCCATTC +
Preference number: 5 (lower is better)
Translates to: QIFFFRTSCLFKPKIIDGSAASM*WERFPF
Trigger: GAATGGAAACCTCTCCCACAACATTGAAGCTGCAGA...CCCATCAATAATCTTAGGCTTGAACAGACAACTTGTCCTAAAGAAAAATATCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp AATGTAATTTGCTGCCAGCCAGTCCCATTTTCTACTGAAATAAACCTTGTAGAATCTGGCACTGTCACCTaGATAACATTATTGCGAGAT +
Preference number: 5 (lower is better)
Translates to: NVICCQPVPFSTEINLVESGTVT*ITLLRD
Trigger: ATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGA...TTCTACAAGGTTTATTTCAGTAGAAAATGGGACTGGCTGGCAGCAAATTACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAATCTGGCACTGTCACCTaGATAACATTATTGCGAGAT +
Preference number: 5 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKSGTVT*ITLLRD
Trigger: ATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGA...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAAACTTGGCATTTCTTCTaGGCGATCTTGTGGAGAATT +
Preference number: 5 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKTWHFF*AILWRI
Trigger: AATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGT...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS-3UTR CAA 90 bp GGTAAAGGCCTAGAACTTTTGAATATTTACACTGTGACAATAGCAGGAAGAAAATTCTTCTTGGCGATCTaGTGGAGAATTGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: GKGLELLNIYTVTIAGRKFFLAI*WRIEAF
Trigger: AAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAA...TTTTCTTCCTGCTATTGTCACAGTGTAAATATTCAAAAGTTCTAGGCCTTTACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 72 bp AGACTGTTGTGGAGGGAGGCAGAGCTTCCGCCTCGTTaGAGGCGTGGCTTCGACGGTAAAGTTGGCCCATCC +
Preference number: 6 (lower is better)
Translates to: RLLWREAELPPR*RRGFDGKVGPS
Trigger: GGATGGGCCAACTTTACCGTCGAAGCCACGCCTCCAACGAGGCGGAAGCTCTGCCTCCCTCCACAACAGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CCA 72 bp TTGCGGGTGTTGGTCGGCCAGGACAAGCTGAGGGGCTaGTCATCTTCTTCCTCGGCAGTCTCTGTGGCCTTC +
Preference number: 6 (lower is better)
Translates to: LRVLVGQDKLRG*SSSSSAVSVAF
Trigger: GAAGGCCACAGAGACTGCCGAGGAAGAAGATGACCAGCCCCTCAGCTTGTCCTGGCCGACCAACACCCGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 72 bp TCCTCGGCAGTCGGGGCATCTGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGGACGGGTTCCGAAGCT +
Preference number: 6 (lower is better)
Translates to: SSAVGASAASML*ERFPFWTGSEA
Trigger: AGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGATGCCCCGACTGCCGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
CDS CAA 72 bp TGGAGGCGTGGCTTCGACGGTAAAGTTGGCCCATCCTaGTCCCCAGCTGTAGGTGACTTTGCTTGGGCTTCT +
Preference number: 6 (lower is better)
Translates to: WRRGFDGKVGPS*SPAVGDFAWAS
Trigger: AGAAGCCCAAGCAAAGTCACCTACAGCTGGGGACAAGGATGGGCCAACTTTACCGTCGAAGCCACGCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS CAA 72 bp GGAAAAACGATTAGGAAGGTGGCTTGCTTGCGGGTGTaGGTCGGCCAGGACAAGCTGAGGGGCTGGTCATCT +
Preference number: 6 (lower is better)
Translates to: GKTIRKVACLRV*VGQDKLRGWSS
Trigger: AGATGACCAGCCCCTCAGCTTGTCCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTTTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CAA 72 bp TGGAGGCGTGGCTTCGACGGTAAAGTTGGCCCATCCTaGTCCCCAGCTGTAGGTGACTCTTCCATACAGCTG +
Preference number: 6 (lower is better)
Translates to: WRRGFDGKVGPS*SPAVGDSSIQL
Trigger: CAGCTGTATGGAAGAGTCACCTACAGCTGGGGACAAGGATGGGCCAACTTTACCGTCGAAGCCACGCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CAA 90 bp AGGGTGTGTATCATGAGCTGGAAGATGCTATTCCTCATGAGACTGTaGTGGAGGGAGGCAGAGCTTCCGCCTCGTTGGAGGCGTGGCTTC +
Preference number: 6 (lower is better)
Translates to: RVCIMSWKMLFLMRL*WREAELPPRWRRGF
Trigger: GAAGCCACGCCTCCAACGAGGCGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTCATGATACACACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CCA 72 bp ATGAGCTGGAAGATGCTATTCCTCATGAGACTGTTGTaGAGGGAGGCAGAGCTTCCGCCTCGTTGGAGGCGT +
Preference number: 6 (lower is better)
Translates to: MSWKMLFLMRLL*REAELPPRWRR
Trigger: ACGCCTCCAACGAGGCGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CCA 72 bp TCTGTGGCCTTCGGGGCATCTGCAGCTTCAATGTTGTaGGAGAGGTTTCCATTCTGGACGGGTTCCGAAGCT +
Preference number: 6 (lower is better)
Translates to: SVAFGASAASML*ERFPFWTGSEA
Trigger: AGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGATGCCCCGAAGGCCACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CAA 90 bp AACACAATGGGAAAAACGATTAGGAAGGTGGCTTGCTTGCGGGTGTaGGTCGGCCAGGACAAGCTGAGGGGCTGGTCATCTTCTTCCTCG +
Preference number: 6 (lower is better)
Translates to: NTMGKTIRKVACLRV*VGQDKLRGWSSSSS
Trigger: CGAGGAAGAAGATGACCAGCCCCTCAGCTTGTCCTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTTTTCCCATTGTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CAA 90 bp GTCCTTTGGGTAGTCTCCCTGGGTGTGCTCAGTACTGTTCTCAGCTaGGTCTTCCTGAGAAGCAGGTGGCTGTGGGGTGTAATCTCGAAT +
Preference number: 6 (lower is better)
Translates to: VLWVVSLGVLSTVLS*VFLRSRWLWGVISN
Trigger: ATTCGAGATTACACCCCACAGCCACCTGCTTCTCAGGAAGACCAAGCTGAGAACAGTACTGAGCACACCCAGGGAGACTACCCAAAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 72 bp CTAAGAGAGTTCTTTGACGGTGACCCTGTGCTACTCTaGGGCCACTCATATCACTGGCTTCTCCTCTGTTGC +
Preference number: 6 (lower is better)
Translates to: LREFFDGDPVLL*GHSYHWLLLCC
Trigger: GCAACAGAGGAGAAGCCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTCACCGTCAAAGAACTCTCTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 72 bp TCTGCAGCTTCAATGTTGTGGGAGAGGTTTCCATTCTaGACGGGTTCCGAAGCTTCGCTCGATGGCGTCATT +
Preference number: 6 (lower is better)
Translates to: SAASMLWERFPF*TGSEASLDGVI
Trigger: AATGACGCCATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAAGCTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CCA 72 bp GCTCTCCATTCACATTCGTTATGCAGGACCCATGCCTaGCTGTCTCAGGGTAGACCTCGAAACACAGACTCT +
Preference number: 6 (lower is better)
Translates to: ALHSHSLCRTHA*LSQGRPRNTDS
Trigger: AGAGTCTGTGTTTCGAGGTCTACCCTGAGACAGCCAGGCATGGGTCCTGCATAACGAATGTGAATGGAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS TCA 72 bp GCGGAACCCACGATGGTGCCAATGCCGACATTGCTGTaGGCAATGAAGACCCCTATAAGAGACGTGAAAAGT +
Preference number: 6 (lower is better)
Translates to: AEPTMVPMPTLL*AMKTPIRDVKS
Trigger: ACTTTTCACGTCTCTTATAGGGGTCTTCATTGCTCACAGCAATGTCGGCATTGGCACCATCGTGGGTTCCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS GCA 72 bp TCTTTTCTTTCAGCGGCTCTCCATTCACATTCGTTATaGAGGACCCATGCCTGGCTGTCTCAGGGTAGACCT +
Preference number: 6 (lower is better)
Translates to: SFLSAALHSHSL*RTHAWLSQGRP
Trigger: AGGTCTACCCTGAGACAGCCAGGCATGGGTCCTGCATAACGAATGTGAATGGAGAGCCGCTGAAAGAAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS TCA 72 bp TTTCCTGCTATTATAATGTCTCCTGCAGCCAAATGGTaGCTCATGGGAACACCATTTCTGCAGGAGCCTGGC +
Preference number: 6 (lower is better)
Translates to: FPAIIMSPAAKW*LMGTPFLQEPG
Trigger: GCCAGGCTCCTGCAGAAATGGTGTTCCCATGAGTCACCATTTGGCTGCAGGAGACATTATAATAGCAGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CAA 90 bp GCAGCCCCATTCTGCCTCTCATTCTCATCCACTTGGCATTTCTTCTaGGCGATCTTGTGGAGAATTGAAGCTTTTTCTCTGAACCTCCCT +
Preference number: 6 (lower is better)
Translates to: AAPFCLSFSSTWHFF*AILWRIEAFSLNLP
Trigger: AGGGAGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGTGGATGAGAATGAGAGGCAGAATGGGGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
ENSMUST00000146815.2
CDS CAA 90 bp TCCCCAGCTGTAGGTGACTTTGCTTGGGCTTCTGGCACTGTCACCTaGATAACATTATTGCGAGATATCATTTGCTTCACCCATCTCTCT +
Preference number: 6 (lower is better)
Translates to: SPAVGDFAWASGTVT*ITLLRDIICFTHLS
Trigger: AGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAGTCACCTACAGCTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS TCA 72 bp GGGCCACTCATATCACTGGCTTCTCCTCTGTTGCTCTaGGAGTCTGTCTCAGTAAAGGCACTGATTGAAAAT +
Preference number: 6 (lower is better)
Translates to: GPLISLASPLLL*ESVSVKALIEN
Trigger: ATTTTCAATCAGTGCCTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGAAGCCAGTGATATGAGTGGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS TCA 72 bp ACTTCCTGGAAGCAGGTTTTCGGACGTCAGGTAAGGTaGTCCAGAGAGGGAACACAATGGGAAAAACGATTA +
Preference number: 6 (lower is better)
Translates to: TSWKQVFGRQVR*SREGTQWEKRL
Trigger: TAATCGTTTTTCCCATTGTGTTCCCTCTCTGGATCACCTTACCTGACGTCCGAAAACCTGCTTCCAGGAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS TCA 72 bp CACTTGGCATTTCTTCTTGGCGATCTTGTGGAGAATTaGAGCTTTTTCTCTGAACCTCCCTTCAGCGAGTGG +
Preference number: 6 (lower is better)
Translates to: HLAFLLGDLVEN*SFFSEPPFSEW
Trigger: CCACTCGCTGAAGGGAGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107155.8
ENSMUST00000107158.9
CDS CAA 90 bp GGTGACTTTGCTTGGGCTTCTGGCACTGTCACCTTGATAACATTATaGCGAGATATCATTTGCTTCACCCATCTCTCTACTTGGACGTTG +
Preference number: 6 (lower is better)
Translates to: GDFAWASGTVTLITL*RDIICFTHLSTWTL
Trigger: CAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAGTCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS CAA 90 bp GAGAGCTTTGCTTGGGCTTCTGGCACTGTCACCTTGATAACATTATaGCGAGATATCATTTGCTTCACCCATCTCTCTACTTGGACGTTG +
Preference number: 6 (lower is better)
Translates to: ESFAWASGTVTLITL*RDIICFTHLSTWTL
Trigger: CAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAGCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
CDS CAA 90 bp GGAGGGAATTCTGAGAGCTTTGCTTGGGCTTCTGGCACTGTCACCTaGATAACATTATTGCGAGATATCATTTGCTTCACCCATCTCTCT +
Preference number: 6 (lower is better)
Translates to: GGNSESFAWASGTVT*ITLLRDIICFTHLS
Trigger: AGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAGCTCTCAGAATTCCCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107158.9
CDS CAA 72 bp GCTTGGGCTTCTGGCACTGTCACCTTGATAACATTATaGCGAGATATCATTTGCTTCACCCATCTCTCTACT +
Preference number: 6 (lower is better)
Translates to: AWASGTVTLITL*RDIICFTHLST
Trigger: AGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CAA 72 bp GTAGGTGACTTTGCTTGGGCTTCTGGCACTGTCACCTaGATAACATTATTGCGAGATATCATTTGCTTCACC +
Preference number: 6 (lower is better)
Translates to: VGDFAWASGTVT*ITLLRDIICFT
Trigger: GGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTGCCAGAAGCCCAAGCAAAGTCACCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
CDS GCA 72 bp ACTGTCACCTTGATAACATTATTGCGAGATATCATTTaGTTCACCCATCTCTCTACTTGGACGTTGAACTTC +
Preference number: 6 (lower is better)
Translates to: TVTLITLLRDII*FTHLSTWTLNF
Trigger: GAAGTTCAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9
CDS CAA 72 bp CACTGTCACCTTGATAACATTATTGCGAGATATCATTaGCTTCACCCATCTCTCTACTTGGACGTTGAACTT +
Preference number: 6 (lower is better)
Translates to: HCHLDNIIARYH*LHPSLYLDVEL
Trigger: AAGTTCAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGACAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044990.11
ENSMUST00000107155.8
ENSMUST00000107157.9
ENSMUST00000107158.9