RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC23A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026205

Ensembl transcript IDs: ENSMUST00000027405.6

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp CAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTaGGACAAAGTATACAGACTCCAGCAAGGTGGCAGT +
Preference number: 3 (lower is better)
Translates to: QPILQVGHIHLH*DKVYRLQQGGS
Trigger: ACTGCCACCTTGCTGGAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
3UTR GCA 72 bp TGCTCAAGTCTTAAGAGGAGGAAAGGCAGCCCATTTTaGAAGTGGGCCACATCCACCTCCACTGGGACAAAG +
Preference number: 3 (lower is better)
Translates to: CSSLKRRKGSPF*KWATSTSTGTK
Trigger: CTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAAGACTTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp AGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGCTGCCACAACCAGGCTaGGAGCCAGCACCAGTGGCC +
Preference number: 4 (lower is better)
Translates to: RKGSPFCKWATSTSTGTKLPQPG*EPAPVA
Trigger: GGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAG...CTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp AGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACGCCCTGCCAGCACACTaGCCAGCCCCTCCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: SPFCKWATSTSTGTKYTDALPAH*PAPPGS
Trigger: TGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCAGGGC...GTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp CCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTCCTGAGCGGGTGGGTATaGGAGCCCTCCTGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: PILQVGHIHLHWDKVYRLLSGWV*EPSWGK
Trigger: CTTCCCCCAGGAGGGCTCTCATACCCACCCGCTCAG...GAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACCTGGAAGCCAGGAGCTaGGCGGGTGGGTATGAGAGC +
Preference number: 4 (lower is better)
Translates to: RQPILQVGHIHLHWDKVYLEARS*AGGYES
Trigger: GCTCTCATACCCACCCGCTCAGCTCCTGGCTTCCAG...GTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp CCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTCGGCTCCAGCCTGTGTTaGGCAGGACTGGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: PILQVGHIHLHWDKVYRLGSSLC*AGLGLP
Trigger: GGGAAGCCCCAGTCCTGCTCAACACAGGCTGGAGCC...GAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp GCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTGGCTCAGCCCTCGACTaGAGGCATGAGGTGGCGGAG +
Preference number: 4 (lower is better)
Translates to: AHFASGPHPPPLGQSIQTGSALD*RHEVAE
Trigger: CTCCGCCACCTCATGCCTGCAGTCGAGGGCTGAGCC...AGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp GGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGGGAGCCAGCACCAGTaGCCCACAGTAGGGGAACAC +
Preference number: 4 (lower is better)
Translates to: GSPFCKWATSTSTGTKYTGSQHQ*PTVGEH
Trigger: GTGTTCCCCTACTGTGGGCCACTGGTGCTGGCTCCC...TGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp GGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACACTACGTTGGGGAAGCTaGATGCAGTGCCCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: GSPFCKWATSTSTGTKYTLRWGS*MQCPGG
Trigger: GCCCCCTGGGCACTGCATCCAGCTTCCCCAACGTAG...TGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp CCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTCAAGGCCAGGCCCCAGTaGGCAGAACAGAACTGGGCC +
Preference number: 4 (lower is better)
Translates to: PILQVGHIHLHWDKVYRLKARPQ*AEQNWA
Trigger: GGCCCAGTTCTGTTCTGCTCACTGGGGCCTGGCCTT...GAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp TTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGCCTCGACTGCAGGCATaGGGTGGCGGAGGAGACAAA +
Preference number: 4 (lower is better)
Translates to: LRGGKAAHFASGPHPPPLPRLQA*GGGGDK
Trigger: TTTGTCTCCTCCGCCACCTCATGCCTGCAGTCGAGG...CAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp GGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTGAAGTTGGCAGCCTCTaGCCTAAGCCTCTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GKAAHFASGPHPPPLGQSEVGSL*PKPLSA
Trigger: GGCTGAGAGAGGCTTAGGTCAGAGGCTGCCAACTTC...ACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp GGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTCTGCCCATCCAAGTCTaGAGGACCGTAGACAGGCCA +
Preference number: 4 (lower is better)
Translates to: GKAAHFASGPHPPPLGQSLPIQV*RTVDRP
Trigger: TGGCCTGTCTACGGTCCTGCAGACTTGGATGGGCAG...ACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp GAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAACATGAACCCAGGTGCTaGGAGCATACCACCATGAGC +
Preference number: 4 (lower is better)
Translates to: EERQPILQVGHIHLHWDKHEPRC*EHTTMS
Trigger: GCTCATGGTGGTATGCTCTCAGCACCTGGGTTCATG...TTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp CCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTCCGGGAGGAGGGATTCTaGAGAGGGGGTAGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: PILQVGHIHLHWDKVYRLREEGF*RGGSSG
Trigger: ACCACTGCTACCCCCTCTCCAGAATCCCTCCTCCCG...GAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp GAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAACCATTCCCACTCACCTaGGTGTGGCAGCCAAAACCA +
Preference number: 4 (lower is better)
Translates to: EERQPILQVGHIHLHWDKPFPLT*VWQPKP
Trigger: TGGTTTTGGCTGCCACACCCAGGTGAGTGGGAATGG...TTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp AGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACAGGCTGCCAAAGCCATaGAGATGCCTGCAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SPFCKWATSTSTGTKYTDRLPKP*RCLQPG
Trigger: CCCTGGCTGCAGGCATCTCCATGGCTTTGGCAGCCT...GTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp TTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGAACCCAAGGAGCTGGTaGAGGCTGCCAAAGCCATGG +
Preference number: 4 (lower is better)
Translates to: LRGGKAAHFASGPHPPPLNPRSW*RLPKPW
Trigger: CCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTT...CAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp AGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGCAACCCAAGGAGCTaGTGGAGGCTGCCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: RQPILQVGHIHLHWDKVYSNPRS*WRLPKP
Trigger: TGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCT...GTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp GGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTGACAGAACTACAGCCTaGGTCACTCCCAGTACCCCA +
Preference number: 4 (lower is better)
Translates to: GKAAHFASGPHPPPLGQSDRTTA*VTPSTP
Trigger: TGGGGTACTGGGAGTGACCCAGGCTGTAGTTCTGTC...ACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp CTTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTTGTGTTGAGCAGGACTaGGGCTTCCCTGAGCCACCT +
Preference number: 4 (lower is better)
Translates to: LKRRKGSPFCKWATSTSTCVEQD*GFPEPP
Trigger: AGGTGGCTCAGGGAAGCCCCAGTCCTGCTCAACACA...AGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp CCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTCACTACACAGGGGCAGTaGGAGGGAGGCATTTCCAGG +
Preference number: 4 (lower is better)
Translates to: PILQVGHIHLHWDKVYRLTTQGQ*EGGISR
Trigger: CCTGGAAATGCCTCCCTCTCACTGCCCCTGTGTAGT...GAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAAGGGGTATCTGGCATaGACCCAGGTGCTGAGAGCA +
Preference number: 4 (lower is better)
Translates to: RQPILQVGHIHLHWDKVYKGYLA*TQVLRA
Trigger: TGCTCTCAGCACCTGGGTTCATGCCAGATACCCCTT...GTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACATGCTGGTAAATAGCTaGGCCAGCCTTGGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: RQPILQVGHIHLHWDKVYMLVNS*ASLGES
Trigger: GCTCTCCCCAAGGCTGGCTCAGCTATTTACCAGCAT...GTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTGGAGAAGCCCACGATaGAGACATTTCGCCCAGAGT +
Preference number: 4 (lower is better)
Translates to: RKGSPFCKWATSTSTGTKWRSPR*RHFAQS
Trigger: ACTCTGGGCGAAATGTCTTCATCGTGGGCTTCTCCA...CTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp TTACAGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGCCCGGACACCACCACTaGCCCCGACACCTCTCGGAG +
Preference number: 4 (lower is better)
Translates to: LQAEISFIQFQPAKPWPLPGHHH*PRHLSE
Trigger: CTCCGAGAGGTGTCGGGGGCAGTGGTGGTGTCCGGG...CAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp CAGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGCTCGTGGGCAGAAAGCCCTaGCACAACCAGGCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: QAEISFIQFQPAKPWPLLVGRKP*HNQAGS
Trigger: GCTCCCAGCCTGGTTGTGGCAGGGCTTTCTGCCCAC...GAGCAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp GGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAAGAGCCCAAGCCCCATaGAGAACAACCCCACTAGGT +
Preference number: 4 (lower is better)
Translates to: GSPFCKWATSTSTGTKYTRAQAP*RTTPLG
Trigger: ACCTAGTGGGGTTGTTCTGCATGGGGCTTGGGCTCT...TGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp TTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGTCACTGTGCCTACGTTaGGGAAGCTGGATGCAGTGC +
Preference number: 4 (lower is better)
Translates to: LRGGKAAHFASGPHPPPLSLCLR*GSWMQC
Trigger: GCACTGCATCCAGCTTCCCCAACGTAGGCACAGTGA...CAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp TTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGATTGGACAGAGGCAGTaGAGAGGCTGTGGGATGCAG +
Preference number: 4 (lower is better)
Translates to: LRGGKAAHFASGPHPPPLIGQRQ*RGCGMQ
Trigger: CTGCATCCCACAGCCTCTCCACTGCCTCTGTCCAAT...CAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACGCAAAAGCAAGGCCATaGAGATGGAGAAGCCCACGA +
Preference number: 4 (lower is better)
Translates to: RQPILQVGHIHLHWDKVYAKARP*RWRSPR
Trigger: TCGTGGGCTTCTCCATCTTCATGGCCTTGCTTTTGC...GTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp CAGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGCTCGGACTGGGGCTTCCCTaGGCCACCTTGGCAAAAGCA +
Preference number: 4 (lower is better)
Translates to: QAEISFIQFQPAKPWPLLGLGLP*ATLAKA
Trigger: TGCTTTTGCCAAGGTGGCTCAGGGAAGCCCCAGTCC...GAGCAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp CTTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGCCCAGAGCAAAGATaGCAAGACCAGGAAATGCTG +
Preference number: 4 (lower is better)
Translates to: LKRRKGSPFCKWATSTSTGPEQR*QDQEML
Trigger: CAGCATTTCCTGGTCTTGGCATCTTTGCTCTGGGCC...AGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp AAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGCCAAAACCAAGGTaGATCCGAGGGCTCAGACAG +
Preference number: 4 (lower is better)
Translates to: KAAHFASGPHPPPLGQSIQPKPR*IRGLRQ
Trigger: CTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCTG...TATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp AGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACGTCAGAGGTAGCTTCTaGTTTGTCAGCACCAGTGCG +
Preference number: 4 (lower is better)
Translates to: RQPILQVGHIHLHWDKVYVRGSF*FVSTSA
Trigger: CGCACTGGTGCTGACAAACCAGAAGCTACCTCTGAC...GTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACCTCCGAGAGCCAGTCTaGAAAAGACTCACTGTGCCT +
Preference number: 4 (lower is better)
Translates to: SPFCKWATSTSTGTKYTDLREPV*KRLTVP
Trigger: AGGCACAGTGAGTCTTTTTCAGACTGGCTCTCGGAG...GTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp GAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGAATTTCTTGGGCAGTaGAAGAAGTTGGCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: EERQPILQVGHIHLHWDKEFLGQ*KKLAAS
Trigger: AGAGGCTGCCAACTTCTTTCACTGCCCAAGAAATTC...TTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp GGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGAAAAAGACTCACTGTaGCTACGTTGGGGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: GSPFCKWATSTSTGTKYTEKDSL*LRWGSW
Trigger: CCAGCTTCCCCAACGTAGGCACAGTGAGTCTTTTTC...TGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp TTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGCAGCCAGGTGAAAGCTaGAGAATCCAGCAGACAGAA +
Preference number: 4 (lower is better)
Translates to: LRGGKAAHFASGPHPPPLQPGES*RIQQTE
Trigger: TTCTGTCTGCTGGATTCTCCAGCTTTCACCTGGCTG...CAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp AGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACCAGATAGAAGTGGAATaGGATGGAGAGGTGATCGGC +
Preference number: 4 (lower is better)
Translates to: SPFCKWATSTSTGTKYTDQIEVE*DGEVIG
Trigger: GCCGATCACCTCTCCATCCCATTCCACTTCTATCTG...GTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp CCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTCCAGAGCTCCAGGCCATaGCAGCTTCTTGTCAAACTA +
Preference number: 4 (lower is better)
Translates to: PILQVGHIHLHWDKVYRLQSSRP*QLLVKL
Trigger: TAGTTTGACAAGAAGCTGCCATGGCCTGGAGCTCTG...GAGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp GAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGACCAGCTAAGAAAATaGGTTCTGCCAGCAAAGAAC +
Preference number: 4 (lower is better)
Translates to: EERQPILQVGHIHLHWDKDQLRK*VLPAKN
Trigger: GTTCTTTGCTGGCAGAACCCATTTTCTTAGCTGGTC...TTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR TCA 90 bp AGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGCTCATCAATGTCAGCCAGGTaGAAGCTGGAGAATCCAGCA +
Preference number: 4 (lower is better)
Translates to: RQKSHLFSSNPLNHGLCSSMSAR*KLENPA
Trigger: TGCTGGATTCTCCAGCTTTCACCTGGCTGACATTGA...TGAGCAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp TTACAGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGTTAGAGGTAGCCTGCTaGCCATCCAAGTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LQAEISFIQFQPAKPWPLLEVAC*PSKSAG
Trigger: TCCTGCAGACTTGGATGGGCAGCAGGCTACCTCTAA...CAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR GCA 90 bp TTACAGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGGCCAAGACCAGGAAATaGTGTAGAGCCAGAAGACAG +
Preference number: 4 (lower is better)
Translates to: LQAEISFIQFQPAKPWPLAKTRK*CRARRQ
Trigger: CTGTCTTCTGGCTCTACAGCATTTCCTGGTCTTGGC...CAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CCA 90 bp AGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGCTCAGAGCAGCTTTCCTCCTaGATTGCTGAAGCATTTGAA +
Preference number: 4 (lower is better)
Translates to: RQKSHLFSSNPLNHGLCSEQLSS*IAEAFE
Trigger: TTCAAATGCTTCAGCAATCCAGGAGGAAAGCTGCTC...TGAGCAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp ACTGGGCCACCTCCTTGTGGGCAGAAAGCCCTGCCACAACCAGGCTaGGAGCCAGCACCAGTGGCCCACAGTAGGGGAACACACGGCCAG +
Preference number: 5 (lower is better)
Translates to: TGPPPCGQKALPQPG*EPAPVAHSRGTHGQ
Trigger: CTGGCCGTGTGTTCCCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTTTCTGCCCACAAGGAGGTGGCCCAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp TGGTGGAGGCTGCCAAAGCCATGGAGATGCCTGCAGCCAGGGCCCTaGGTGTCAGCAAGGGCCATTCCCACTCACCTGGGTGTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: WWRLPKPWRCLQPGP*VSARAIPTHLGVAA
Trigger: GGCTGCCACACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTGGCTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp GCAACCCAAGGAGCTGGTGGAGGCTGCCAAAGCCATGGAGATGCCTaGAGCCAGGGCCCTGGGTGTCAGCAAGGGCCATTCCCACTCACC +
Preference number: 5 (lower is better)
Translates to: ATQGAGGGCQSHGDA*SQGPGCQQGPFPLT
Trigger: GGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTGGCTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp GTGAGCAGAACAGAACTGGGCCACCTCCTTGTGGGCAGAAAGCCCTaGCACAACCAGGCTGGGAGCCAGCACCAGTGGCCCACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: VSRTELGHLLVGRKP*HNQAGSQHQWPTVG
Trigger: CCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTTTCTGCCCACAAGGAGGTGGCCCAGTTCTGTTCTGCTCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp CAGCTGGCCACACAGAGCATAGCAACCCAAGGAGCTGGTGGAGGCTaGCAAAGCCATGGAGATGCCTGCAGCCAGGGCCCTGGGTGTCAG +
Preference number: 5 (lower is better)
Translates to: QLATQSIATQGAGGG*QSHGDACSQGPGCQ
Trigger: CTGACACCCAGGGCCCTGGCTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATGCTCTGTGTGGCCAGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp CAGGGCCCTGGGTGTCAGCAAGGGCCATTCCCACTCACCTGGGTGTaGCAGCCAAAACCAAGGTGCATCCGAGGGCTCAGACAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: QGPGCQQGPFPLTWV*QPKPRCIRGLRQLQ
Trigger: CTGCAGCTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCTGCCACACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp TGCAGCCAGGGCCCTGGGTGTCAGCAAGGGCCATTCCCACTCACCTaGGTGTGGCAGCCAAAACCAAGGTGCATCCGAGGGCTCAGACAG +
Preference number: 5 (lower is better)
Translates to: CSQGPGCQQGPFPLT*VWQPKPRCIRGLRQ
Trigger: CTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCTGCCACACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTGGCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp CATAGCAACCCAAGGAGCTGGTGGAGGCTGCCAAAGCCATGGAGATaGCTGCAGCCAGGGCCCTGGGTGTCAGCAAGGGCCATTCCCACT +
Preference number: 5 (lower is better)
Translates to: HSNPRSWWRLPKPWR*LQPGPWVSARAIPT
Trigger: AGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTGGCTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp ACAAACGCAGCAGCTGGCCACACAGAGCATAGCAACCCAAGGAGCTaGTGGAGGCTGCCAAAGCCATGGAGATGCCTGCAGCCAGGGCCC +
Preference number: 5 (lower is better)
Translates to: TNAAAGHTEHSNPRS*WRLPKPWRCLQPGP
Trigger: GGGCCCTGGCTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATGCTCTGTGTGGCCAGCTGCTGCGTTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 90 bp GATGGCCTCCAGGAGCAAAGGGGTATCTGGCATGAACCCAGGTGCTaGGAGCATACCACCATGAGCAGGATGAGCAGCAAGGCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: DGLQEQRGIWHEPRC*EHTTMSRMSSKARP
Trigger: GGGCCTGGCCTTGCTGCTCATCCTGCTCATGGTGGTATGCTCTCAGCACCTGGGTTCATGCCAGATACCCCTTTGCTCCTGGAGGCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp GCCCCCGACACCTCTCGGAGAGAAGTGTTCCAGAGCTCCAGGCCATaGCAGCTTCTTGTCAAACTACACAGGGGCAGTGAGAGGGAGGCA +
Preference number: 5 (lower is better)
Translates to: APDTSRREVFQSSRP*QLLVKLHRGSEREA
Trigger: TGCCTCCCTCTCACTGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGCCTGGAGCTCTGGAACACTTCTCTCCGAGAGGTGTCGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 90 bp GCAAAGATGCCAAGACCAGGAAATGCTGTAGAGCCAGAAGACAGCTaGGCCCCCAGGTGGAAGGCCCACACACCCGAGAGGCCCAAGAAC +
Preference number: 5 (lower is better)
Translates to: AKMPRPGNAVEPEDS*APRWKAHTPERPKN
Trigger: GTTCTTGGGCCTCTCGGGTGTGTGGGCCTTCCACCTGGGGGCTCAGCTGTCTTCTGGCTCTACAGCATTTCCTGGTCTTGGCATCTTTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp CAAGGGCCATTCCCACTCACCTGGGTGTGGCAGCCAAAACCAAGGTaGATCCGAGGGCTCAGACAGCTGCAGAGGGATAACACTCGTACC +
Preference number: 5 (lower is better)
Translates to: QGPFPLTWVWQPKPR*IRGLRQLQRDNTRT
Trigger: GGTACGAGTGTTATCCCTCTGCAGCTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCTGCCACACCCAGGTGAGTGGGAATGGCCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp GTCTTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCAGGGCTCCAGCCTGTGTaGAGCAGGACTGGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: VLRGGKAAHFASGPHPPPGLQPV*SRTGAS
Trigger: GGAAGCCCCAGTCCTGCTCAACACAGGCTGGAGCCC...TGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp CTTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTATAGCTGAGCCAGCCTaGGGGAGAGCCCAAGCCCCA +
Preference number: 5 (lower is better)
Translates to: LKRRKGSPFCKWATSTSTIAEPA*GRAQAP
Trigger: TGGGGCTTGGGCTCTCCCCAAGGCTGGCTCAGCTAT...AGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp AGGGACGGAGCCTGGATTAGAGGTAGCCTGCTGCCCATCCAAGTCTaGAGGACCGTAGACAGGCCACATGAAAAGAAACTGGAAGCCAGG +
Preference number: 5 (lower is better)
Translates to: RDGAWIRGSLLPIQV*RTVDRPHEKKLEAR
Trigger: CCTGGCTTCCAGTTTCTTTTCATGTGGCCTGTCTACGGTCCTGCAGACTTGGATGGGCAGCAGGCTACCTCTAATCCAGGCTCCGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 90 bp GGGTGTGGCAGCCAAAACCAAGGTGCATCCGAGGGCTCAGACAGCTaGAGAGGGATAACACTCGTACCCACAAAGGCAGAGATGAACCAC +
Preference number: 5 (lower is better)
Translates to: GCGSQNQGASEGSDS*RGITLVPTKAEMNH
Trigger: GTGGTTCATCTCTGCCTTTGTGGGTACGAGTGTTATCCCTCTGCAGCTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCTGCCACACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp TCAAACTACACAGGGGCAGTGAGAGGGAGGCATTTCCAGGTGTCTTaGTCGTCAGAGGTAGCTTCTGGTTTGTCAGCACCAGTGCGGGGA +
Preference number: 5 (lower is better)
Translates to: SNYTGAVRGRHFQVS*SSEVASGLSAPVRG
Trigger: TCCCCGCACTGGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCTGGAAATGCCTCCCTCTCACTGCCCCTGTGTAGTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp ACGAAGAAACATATCCAGGGGGCTCCAGCCTGTGTTGAGCAGGACTaGGGCTTCCCTGAGCCACCTTGGCAAAAGCAAGGCCATGAAGAT +
Preference number: 5 (lower is better)
Translates to: TKKHIQGAPACVEQD*GFPEPPWQKQGHED
Trigger: ATCTTCATGGCCTTGCTTTTGCCAAGGTGGCTCAGGGAAGCCCCAGTCCTGCTCAACACAGGCTGGAGCCCCCTGGATATGTTTCTTCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp CTTAAGAGGAGGAAAGGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGAGGTAGCTTCTGGTTaGTCAGCACCAGTGCGGGGA +
Preference number: 5 (lower is better)
Translates to: LKRRKGSPFCKWATSTSTEVASG*SAPVRG
Trigger: TCCCCGCACTGGTGCTGACAAACCAGAAGCTACCTC...AGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCCTTTCCTCCTCTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 90 bp GACAGAGGCAGTGGAGAGGCTGTGGGATGCAGGAACACAGGTTTCTaGTGGGTAAAGGAAGCCCATACTCTTGAGCAGCTTTCCTCCTGG +
Preference number: 5 (lower is better)
Translates to: DRGSGEAVGCRNTGF*WVKEAHTLEQLSSW
Trigger: CCAGGAGGAAAGCTGCTCAAGAGTATGGGCTTCCTTTACCCATCAGAAACCTGTGTTCCTGCATCCCACAGCCTCTCCACTGCCTCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp GAGAGGGAGGCATTTCCAGGTGTCTTGGTCGTCAGAGGTAGCTTCTaGTTTGTCAGCACCAGTGCGGGGATAAGAAACTCTAGGGACGGA +
Preference number: 5 (lower is better)
Translates to: EREAFPGVLVVRGSF*FVSTSAGIRNSRDG
Trigger: TCCGTCCCTAGAGTTTCTTATCCCCGCACTGGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCTGGAAATGCCTCCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp GGCAGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGGCCATGGCAGCTTCTaGTCAAACTACACAGGGGCA +
Preference number: 5 (lower is better)
Translates to: GSPFCKWATSTSTGTKYTGHGSF*SNYTGA
Trigger: TGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGCC...TGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 90 bp GATCCTCCTTCATCCCCAGAGTCTTCAGGCATTGGACAGAGGCAGTaGAGAGGCTGTGGGATGCAGGAACACAGGTTTCTGATGGGTAAA +
Preference number: 5 (lower is better)
Translates to: DPPSSPESSGIGQRQ*RGCGMQEHRFLMGK
Trigger: TTTACCCATCAGAAACCTGTGTTCCTGCATCCCACAGCCTCTCCACTGCCTCTGTCCAATGCCTGAAGACTCTGGGGATGAAGGAGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 90 bp ACAGGGGCAAGCACCGAAAGGAGTCGGAAGACGGGAATACAAATGTaGGTTGAAGTTGAAGATGGCCTCCAGGAGCAAAGGGGTATCTGG +
Preference number: 5 (lower is better)
Translates to: TGASTERSRKTGIQM*VEVEDGLQEQRGIW
Trigger: CCAGATACCCCTTTGCTCCTGGAGGCCATCTTCAACTTCAACTCACATTTGTATTCCCGTCTTCCGACTCCTTTCGGTGCTTGCCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 90 bp AAGCCCACGATGAAGACATTTCGCCCAGAGTCAATGTCAGCCAGGTaGAAGCTGGAGAATCCAGCAGACAGAACTACAGCCTGGGTCACT +
Preference number: 5 (lower is better)
Translates to: KPTMKTFRPESMSAR*KLENPADRTTAWVT
Trigger: AGTGACCCAGGCTGTAGTTCTGTCTGCTGGATTCTCCAGCTTTCACCTGGCTGACATTGACTCTGGGCGAAATGTCTTCATCGTGGGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp GCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACTAAATGTGAGTTGAAGTaGAAGATGGCCTCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: AHFASGPHPPPLGQSIQTKCELK*KMASRS
Trigger: GCTCCTGGAGGCCATCTTCAACTTCAACTCACATTT...AGTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp CAGGCAGAAATCTCATTTATTCAGTTCCAACCCGCTAAACCATGGCCTCTGCTCAGGAAGCCCATACTCTaGAGCAGCTTTCCTCCTGGA +
Preference number: 5 (lower is better)
Translates to: QAEISFIQFQPAKPWPLLRKPIL*SSFPPG
Trigger: TCCAGGAGGAAAGCTGCTCAAGAGTATGGGCTTCCT...GAGCAGAGGCCATGGTTTAGCGGGTTGGAACTGAATAAATGAGATTTCTGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS-3UTR CAA 90 bp AGCCCATTTTGCAAGTGGGCCACATCCACCTCCACTGGGACAAAGTATACAGACAGCTTTCCTCCTGGATaGCTGAAGCATTTGAATTTC +
Preference number: 5 (lower is better)
Translates to: SPFCKWATSTSTGTKYTDSFPPG*LKHLNF
Trigger: GAAATTCAAATGCTTCAGCAATCCAGGAGGAAAGCT...GTCTGTATACTTTGTCCCAGTGGAGGTGGATGTGGCCCACTTGCAAAATGGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp CCCAGCCCCTCCAGGCTCAGCCCTCGACTGCAGGCATaGGGTGGCGGAGGAGACAAACGCAGCAGCTGGCCA +
Preference number: 6 (lower is better)
Translates to: PSPSRLSPRLQA*GGGGDKRSSWP
Trigger: TGGCCAGCTGCTGCGTTTGTCTCCTCCGCCACCTCATGCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp AAGCCCTGCCACAACCAGGCTGGGAGCCAGCACCAGTaGCCCACAGTAGGGGAACACACGGCCAGGCACCCC +
Preference number: 6 (lower is better)
Translates to: KPCHNQAGSQHQ*PTVGEHTARHP
Trigger: GGGGTGCCTGGCCGTGTGTTCCCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 72 bp ACACGGCCAGGCACCCCTAGAAGTCCTATAGTGCCCTaGAGCAGCCCGGACACCACCACTGCCCCCGACACC +
Preference number: 6 (lower is better)
Translates to: TRPGTPRSPIVP*SSPDTTTAPDT
Trigger: GGTGTCGGGGGCAGTGGTGGTGTCCGGGCTGCTGCAGGGCACTATAGGACTTCTAGGGGTGCCTGGCCGTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 72 bp ACAGAACTGGGCCACCTCCTTGTGGGCAGAAAGCCCTaGCACAACCAGGCTGGGAGCCAGCACCAGTGGCCC +
Preference number: 6 (lower is better)
Translates to: TELGHLLVGRKP*HNQAGSQHQWP
Trigger: GGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTTTCTGCCCACAAGGAGGTGGCCCAGTTCTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp CCTCCTTGTGGGCAGAAAGCCCTGCCACAACCAGGCTaGGAGCCAGCACCAGTGGCCCACAGTAGGGGAACA +
Preference number: 6 (lower is better)
Translates to: PPCGQKALPQPG*EPAPVAHSRGT
Trigger: TGTTCCCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTTTCTGCCCACAAGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp GGCCCTGGGTGTCAGCAAGGGCCATTCCCACTCACCTaGGTGTGGCAGCCAAAACCAAGGTGCATCCGAGGG +
Preference number: 6 (lower is better)
Translates to: GPGCQQGPFPLT*VWQPKPRCIRG
Trigger: CCCTCGGATGCACCTTGGTTTTGGCTGCCACACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp CTGCCAAAGCCATGGAGATGCCTGCAGCCAGGGCCCTaGGTGTCAGCAAGGGCCATTCCCACTCACCTGGGT +
Preference number: 6 (lower is better)
Translates to: LPKPWRCLQPGP*VSARAIPTHLG
Trigger: ACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTGGCTGCAGGCATCTCCATGGCTTTGGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 72 bp TCCTATAGTGCCCTGCAGCAGCCCGGACACCACCACTaGCCCCGACACCTCTCGGAGAGAAGTGTTCCAGAG +
Preference number: 6 (lower is better)
Translates to: SYSALQQPGHHH*PRHLSERSVPE
Trigger: CTCTGGAACACTTCTCTCCGAGAGGTGTCGGGGGCAGTGGTGGTGTCCGGGCTGCTGCAGGGCACTATAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp CCACCAAGCACAGGCAGTGGGATGCTGGTAAATAGCTaGGCCAGCCTTGGGGAGAGCCCAAGCCCCATGCAG +
Preference number: 6 (lower is better)
Translates to: PPSTGSGMLVNS*ASLGESPSPMQ
Trigger: CTGCATGGGGCTTGGGCTCTCCCCAAGGCTGGCTCAGCTATTTACCAGCATCCCACTGCCTGTGCTTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp GCTGGCCACACAGAGCATAGCAACCCAAGGAGCTGGTaGAGGCTGCCAAAGCCATGGAGATGCCTGCAGCCA +
Preference number: 6 (lower is better)
Translates to: AGHTEHSNPRSW*RLPKPWRCLQP
Trigger: TGGCTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATGCTCTGTGTGGCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp GCAGCTGGCCACACAGAGCATAGCAACCCAAGGAGCTaGTGGAGGCTGCCAAAGCCATGGAGATGCCTGCAG +
Preference number: 6 (lower is better)
Translates to: AAGHTEHSNPRS*WRLPKPWRCLQ
Trigger: CTGCAGGCATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATGCTCTGTGTGGCCAGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp AAAGAAACTGGAAGCCAGGAGCTGAGCGGGTGGGTATaGGAGCCCTCCTGGGGGAAGACCATGAAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: KETGSQELSGWV*EPSWGKTMKQQ
Trigger: CTGCTGCTTCATGGTCTTCCCCCAGGAGGGCTCTCATACCCACCCGCTCAGCTCCTGGCTTCCAGTTTCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp GCCCATCCAAGTCTGCAGGACCGTAGACAGGCCACATaGAAAGAAACTGGAAGCCAGGAGCTGAGCGGGTGG +
Preference number: 6 (lower is better)
Translates to: AHPSLQDRRQAT*KETGSQELSGW
Trigger: CCACCCGCTCAGCTCCTGGCTTCCAGTTTCTTTTCATGTGGCCTGTCTACGGTCCTGCAGACTTGGATGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 72 bp TTCCCACTCACCTGGGTGTGGCAGCCAAAACCAAGGTaGATCCGAGGGCTCAGACAGCTGCAGAGGGATAAC +
Preference number: 6 (lower is better)
Translates to: FPLTWVWQPKPR*IRGLRQLQRDN
Trigger: GTTATCCCTCTGCAGCTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCTGCCACACCCAGGTGAGTGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 72 bp CCACTCTCCGAGAGCCAGTCTGAAAAAGACTCACTGTaGCTACGTTGGGGAAGCTGGATGCAGTGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: PLSESQSEKDSL*LRWGSWMQCPG
Trigger: CCCTGGGCACTGCATCCAGCTTCCCCAACGTAGGCACAGTGAGTCTTTTTCAGACTGGCTCTCGGAGAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 90 bp GTCAAACTACACAGGGGCAGTGAGAGGGAGGCATTTCCAGGTGTCTaGGTCGTCAGAGGTAGCTTCTGGTTTGTCAGCACCAGTGCGGGG +
Preference number: 6 (lower is better)
Translates to: VKLHRGSEREAFPGV*VVRGSFWFVSTSAG
Trigger: CCCCGCACTGGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCTGGAAATGCCTCCCTCTCACTGCCCCTGTGTAGTTTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 90 bp CCTCTCGGAGAGAAGTGTTCCAGAGCTCCAGGCCATGGCAGCTTCTaGTCAAACTACACAGGGGCAGTGAGAGGGAGGCATTTCCAGGTG +
Preference number: 6 (lower is better)
Translates to: PLGEKCSRAPGHGSF*SNYTGAVRGRHFQV
Trigger: CACCTGGAAATGCCTCCCTCTCACTGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGCCTGGAGCTCTGGAACACTTCTCTCCGAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 72 bp CACAGGGGCAGTGAGAGGGAGGCATTTCCAGGTGTCTaGGTCGTCAGAGGTAGCTTCTGGTTTGTCAGCACC +
Preference number: 6 (lower is better)
Translates to: HRGSEREAFPGV*VVRGSFWFVST
Trigger: GGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCTGGAAATGCCTCCCTCTCACTGCCCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp GCCATGGCAGCTTCTTGTCAAACTACACAGGGGCAGTaGGAGGGAGGCATTTCCAGGTGTCTTGGTCGTCAG +
Preference number: 6 (lower is better)
Translates to: AMAASCQTTQGQ*EGGISRCLGRQ
Trigger: CTGACGACCAAGACACCTGGAAATGCCTCCCTCTCACTGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS GCA 72 bp AGCCAAAACCAAGGTGCATCCGAGGGCTCAGACAGCTaGAGAGGGATAACACTCGTACCCACAAAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: SQNQGASEGSDS*RGITLVPTKAE
Trigger: CTCTGCCTTTGTGGGTACGAGTGTTATCCCTCTGCAGCTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp ACAGGGGCAGTGAGAGGGAGGCATTTCCAGGTGTCTTaGTCGTCAGAGGTAGCTTCTGGTTTGTCAGCACCA +
Preference number: 6 (lower is better)
Translates to: TGAVRGRHFQVS*SSEVASGLSAP
Trigger: TGGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCTGGAAATGCCTCCCTCTCACTGCCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp ACCTCTCGGAGAGAAGTGTTCCAGAGCTCCAGGCCATaGCAGCTTCTTGTCAAACTACACAGGGGCAGTGAG +
Preference number: 6 (lower is better)
Translates to: TSRREVFQSSRP*QLLVKLHRGSE
Trigger: CTCACTGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGCCTGGAGCTCTGGAACACTTCTCTCCGAGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 72 bp GAGAAGTGTTCCAGAGCTCCAGGCCATGGCAGCTTCTaGTCAAACTACACAGGGGCAGTGAGAGGGAGGCAT +
Preference number: 6 (lower is better)
Translates to: EKCSRAPGHGSF*SNYTGAVRGRH
Trigger: ATGCCTCCCTCTCACTGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGCCTGGAGCTCTGGAACACTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 90 bp GCACCGAAAGGAGTCGGAAGACGGGAATACAAATGTGAGTTGAAGTaGAAGATGGCCTCCAGGAGCAAAGGGGTATCTGGCATGAACCCA +
Preference number: 6 (lower is better)
Translates to: APKGVGRREYKCELK*KMASRSKGVSGMNP
Trigger: TGGGTTCATGCCAGATACCCCTTTGCTCCTGGAGGCCATCTTCAACTTCAACTCACATTTGTATTCCCGTCTTCCGACTCCTTTCGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp AGTGGAGAGGCTGTGGGATGCAGGAACACAGGTTTCTaGTGGGTAAAGGAAGCCCATACTCTTGAGCAGCTT +
Preference number: 6 (lower is better)
Translates to: SGEAVGCRNTGF*WVKEAHTLEQL
Trigger: AAGCTGCTCAAGAGTATGGGCTTCCTTTACCCATCAGAAACCTGTGTTCCTGCATCCCACAGCCTCTCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CCA 72 bp GCATTTCCAGGTGTCTTGGTCGTCAGAGGTAGCTTCTaGTTTGTCAGCACCAGTGCGGGGATAAGAAACTCT +
Preference number: 6 (lower is better)
Translates to: AFPGVLVVRGSF*FVSTSAGIRNS
Trigger: AGAGTTTCTTATCCCCGCACTGGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCTGGAAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 72 bp GGAGTCGGAAGACGGGAATACAAATGTGAGTTGAAGTaGAAGATGGCCTCCAGGAGCAAAGGGGTATCTGGC +
Preference number: 6 (lower is better)
Translates to: GVGRREYKCELK*KMASRSKGVSG
Trigger: GCCAGATACCCCTTTGCTCCTGGAGGCCATCTTCAACTTCAACTCACATTTGTATTCCCGTCTTCCGACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp AGCACCGAAAGGAGTCGGAAGACGGGAATACAAATGTaGGTTGAAGTTGAAGATGGCCTCCAGGAGCAAAGG +
Preference number: 6 (lower is better)
Translates to: STERSRKTGIQM*VEVEDGLQEQR
Trigger: CCTTTGCTCCTGGAGGCCATCTTCAACTTCAACTCACATTTGTATTCCCGTCTTCCGACTCCTTTCGGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS TCA 72 bp ATGAAGACATTTCGCCCAGAGTCAATGTCAGCCAGGTaGAAGCTGGAGAATCCAGCAGACAGAACTACAGCC +
Preference number: 6 (lower is better)
Translates to: MKTFRPESMSAR*KLENPADRTTA
Trigger: GGCTGTAGTTCTGTCTGCTGGATTCTCCAGCTTTCACCTGGCTGACATTGACTCTGGGCGAAATGTCTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6
CDS CAA 72 bp CTCTTGAGCAGCTTTCCTCCTGGATTGCTGAAGCATTaGAATTTCTTGGGCAGTGAAAGAAGTTGGCAGCCT +
Preference number: 6 (lower is better)
Translates to: LLSSFPPGLLKH*NFLGSERSWQP
Trigger: AGGCTGCCAACTTCTTTCACTGCCCAAGAAATTCAAATGCTTCAGCAATCCAGGAGGAAAGCTGCTCAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027405.6