RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC22A8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063796

Ensembl transcript IDs: ENSMUST00000010251.11, ENSMUST00000170817.2

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGAAATGGCCAATACAAAGAGGGTAGAGAAAAATGGCAGGGCCTaGGTTGCAGGGAGGATGAGTGCAGGAGTGAGTATGGCTAGGGCT +
Preference number: 1 (lower is better)
Translates to: EEMANTKRVEKNGRA*VAGRMSAGVSMARA
Trigger: AGCCCTAGCCATACTCACTCCTGCACTCATCCTCCCTGCAACCCAGGCCCTGCCATTTTTCTCTACCCTCTTTGTATTGGCCATTTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 90 bp GGGTTGTGGGCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTaGACTCTCAGAAGTCTTTGTTCTGAGAGCATGGAGCCAGCTGGG +
Preference number: 1 (lower is better)
Translates to: GLWATVEVVKVKHFC*TLRSLCSESMEPAG
Trigger: CCCAGCTGGCTCCATGCTCTCAGAACAAAGACTTCTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGCCCACAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 90 bp CCCTCCATAAGACTGGCATGTAGACAAACCTGTGGGGTATTGGCATaGTTAATGATTGACGTGGCAGGACCTGGCCCACTATGGCTGATG +
Preference number: 1 (lower is better)
Translates to: PSIRLACRQTCGVLA*LMIDVAGPGPLWLM
Trigger: CATCAGCCATAGTGGGCCAGGTCCTGCCACGTCAATCATTAATCATGCCAATACCCCACAGGTTTGTCTACATGCCAGTCTTATGGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 90 bp ATGTGTATGTGTGTGGTATGTGTGTGTGCTCACATGTCCACATCATaGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTTCATTG +
Preference number: 1 (lower is better)
Translates to: MCMCVVCVCAHMSTS*PALFPTKHGLSSSL
Trigger: CAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTGAGCACACACACATACCACACACATACACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTaGTATGTGTGTGTGCTCACATGTCCACATCATGGCCAGCCCTCT +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCVCVCVCV*YVCVLTCPHHGQPS
Trigger: AGAGGGCTGGCCATGATGTGGACATGTGAGCACACACACATACCACACACATACACATACACACACACACACACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 90 bp TGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTTCATTGTaGTTTATTGAAATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTA +
Preference number: 1 (lower is better)
Translates to: WPALFPTKHGLSSSL*FIEISHQGESLGKV
Trigger: TACCTTCCCCAAACTCTCTCCTTGGTGGGAAATTTCAATAAACCACAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 90 bp GGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAAGGGAAATaGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGTAGA +
Preference number: 1 (lower is better)
Translates to: GKRKPLELPGNLKGK*RWDNGGNGQYKEGR
Trigger: TCTACCCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 90 bp AGTTCCTGCCCTGATTTGAGGAGGTGGAACCTGAGCATTGTAAGATaGAATAAACCCTTTTCTCCCGGAGAGGCTTTTAATCATGGTGTT +
Preference number: 1 (lower is better)
Translates to: SSCPDLRRWNLSIVR*NKPFSPGEAFNHGV
Trigger: AACACCATGATTAAAAGCCTCTCCGGGAGAAAAGGGTTTATTTCATCTTACAATGCTCAGGTTCCACCTCCTCAAATCAGGGCAGGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 90 bp AGGAAACCATTAGAACTGCCAGGGAATCTCAAAGGGAAATGGAGGTaGGACAATGGAGGAAATGGCCAATACAAAGAGGGTAGAGAAAAA +
Preference number: 1 (lower is better)
Translates to: RKPLELPGNLKGKWR*DNGGNGQYKEGREK
Trigger: TTTTTCTCTACCCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGGCAGTTCTAATGGTTTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 90 bp TGCATGCAGCTTAGTTCCCATATCTTTATGTTCATATGGTACAGATaGACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: CMQLSSHIFMFIWYR*TSVCVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAGATATGGGAACTAAGCTGCATGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR GCA 90 bp CACAAACAGACTAGGACACATGTATGCATTCATAGCAGGCTAGCTTaGATGCAGCTTAGTTCCCATATCTTTATGTTCATATGGTACAGA +
Preference number: 1 (lower is better)
Translates to: HKQTRTHVCIHSRLA*MQLSSHIFMFIWYR
Trigger: TCTGTACCATATGAACATAAAGATATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCTAGTCTGTTTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp ACTATGGCTGATGCCACCCCTGGGCTGGTGGTGCCAAGAGGAGCAGTCAGTAAGTGGAAGGGCCCTGCTTaGGATCAGTCTCTGGAAGGC +
Preference number: 2 (lower is better)
Translates to: TMADATPGLVVPRGAVSKWKGPA*DQSLEG
Trigger: GCCTTCCAGAGACTGATCCCAAGCAGGGCCCTTCCA...CTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGTTTGTTCTGAGAGCATaGAGCCAGCTGGGGCTCCAC +
Preference number: 2 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEFVLRA*SQLGLH
Trigger: GTGGAGCCCCAGCTGGCTCCATGCTCTCAGAACAAA...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCCACATGTCCACATCATaGCCAGCCCTCTTTCCCACG +
Preference number: 2 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSHMSTS*PALFPT
Trigger: CGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTCAGAAGTCTTTGTTCTaGGAGCATGGAGCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSQKSLF*EHGASW
Trigger: CCAGCTGGCTCCATGCTCTCAGAACAAAGACTTCTG...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp ACTATGGCTGATGCCACCCCTGGGCTGGTGGTGCCAAGAGGAGCAGTCAGTAAGAAAGGGAAATGGAGGTaGGACAATGGAGGAAATGGC +
Preference number: 2 (lower is better)
Translates to: TMADATPGLVVPRGAVSKKGKWR*DNGGNG
Trigger: GCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTT...CTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCCACATGTCCACATCATaGCCAGCCCTCTTTCCCACG +
Preference number: 2 (lower is better)
Translates to: GSEATMPSEHGTKPPTESHMSTS*PALFPT
Trigger: CGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTAAAGGGAAATGGAGGTaGGACAATGGAGGAAATGGC +
Preference number: 2 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSKGKWR*DNGGNG
Trigger: GCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTT...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGTGGAAGGGCCCTGCTTaGGATCAGTCTCTGGAAGGC +
Preference number: 2 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRWKGPA*DQSLEG
Trigger: GCCTTCCAGAGACTGATCCCAAGCAGGGCCCTTCCA...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTAATCTCAAAGGGAAATaGAGGTGGGACAATGGAGGA +
Preference number: 2 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSNLKGK*RWDNGG
Trigger: TCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATT...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGTTTGTTCTGAGAGCATaGAGCCAGCTGGGGCTCCAC +
Preference number: 2 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRFVLRA*SQLGLH
Trigger: GTGGAGCCCCAGCTGGCTCCATGCTCTCAGAACAAA...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CAA 90 bp TCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTTCATaGTGGTTTATTGAAATTTCCCACCAAGGAGAGAGTTTGGGGAAG +
Preference number: 2 (lower is better)
Translates to: SWPALFPTKHGLSSS*WFIEISHQGESLGK
Trigger: CTTCCCCAAACTCTCTCCTTGGTGGGAAATTTCAATAAACCACAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATCAGAAGTCTTTGTTCTaGGAGCATGGAGCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHQKSLF*EHGASW
Trigger: CCAGCTGGCTCCATGCTCTCAGAACAAAGACTTCTG...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCATGGAGGTGGGACAATaGAGGAAATGGCCAATACAA +
Preference number: 2 (lower is better)
Translates to: GSEATMPSEHGTKPPTESMEVGQ*RKWPIQ
Trigger: TTGTATTGGCCATTTCCTCCATTGTCCCACCTCCAT...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGAAAAATGGCAGGGCCTaGGTTGCAGGGAGGATGAGT +
Preference number: 2 (lower is better)
Translates to: NFPPRREFGEGKRKPLELKNGRA*VAGRMS
Trigger: ACTCATCCTCCCTGCAACCCAGGCCCTGCCATTTTT...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp ATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTTCATTGTGGTTTATAATCTCAAAGGGAAATaGAGGTGGGACAATGGAGGA +
Preference number: 2 (lower is better)
Translates to: MASPLSHEAWPEFFIVVYNLKGK*RWDNGG
Trigger: TCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATT...ATAAACCACAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCCACGAAGCATGGCCTaGGTTCTTCATTGTGGTTTA +
Preference number: 2 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQPRSMA*VLHCGL
Trigger: TAAACCACAATGAAGAACTCAGGCCATGCTTCGTGG...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTCCACGAAGCATGGCCTaGGTTCTTCATTGTGGTTTA +
Preference number: 2 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCPRSMA*VLHCGL
Trigger: TAAACCACAATGAAGAACTCAGGCCATGCTTCGTGG...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGGTGCTTGGATGGAACTaGTCCAAGCTGAGTGTCCTG +
Preference number: 2 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVVLGWN*SKLSVL
Trigger: CAGGACACTCAGCTTGGATCAGTTCCATCCAAGCAC...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR GCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTACTAGGACACATGTATaGATTCATAGCAGGCTAGCT +
Preference number: 2 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCTRTHV*IHSRLA
Trigger: AGCTAGCCTGCTATGAATGCATACATGTGTCCTAGT...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR GCA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGGTAGTTTGTTATACCTaGACAAACAGACTAGGACAC +
Preference number: 2 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQVVCYT*TNRLGH
Trigger: GTGTCCTAGTCTGTTTGTGCAGGTATAACAAACTAC...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATTTCATTGTGGTTTATTaGAATTTCCCACCAAGGAGA +
Preference number: 2 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHFIVVY*NFPPRR
Trigger: TCTCCTTGGTGGGAAATTTCAATAAACCACAATGAA...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR GCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGATAGCCTCTGTTGAGTaGTTGGATGGAACTGATCCA +
Preference number: 2 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVIASVE*LDGTDP
Trigger: TGGATCAGTTCCATCCAAGCACTCAACAGAGGCTAT...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGGTAAAACACTTTTGCTaGACTCTCAGAAGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: NFPPRREFGEGKRKPLELVKHFC*TLRSLC
Trigger: ACAAAGACTTCTGAGAGTTCAGCAAAAGTGTTTTAC...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR TCA 90 bp CTTTATGTTCATATGGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGGTAAAACACTTTTGCTaGACTCTCAGAAGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: LYVHMVQMDKCVCVCVCVVKHFC*TLRSLC
Trigger: ACAAAGACTTCTGAGAGTTCAGCAAAAGTGTTTTAC...CACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CCA 90 bp CTTTATGTTCATATGGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGCTGAGTTCTTCATTGTaGTTTATTGAAATTTCCCAC +
Preference number: 2 (lower is better)
Translates to: LYVHMVQMDKCVCVCVCVLSSSL*FIEISH
Trigger: GTGGGAAATTTCAATAAACCACAATGAAGAACTCAG...CACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR GCA 72 bp CATGGAGCCAGCTGGGGCTCCACCCAACCCCTAAGGTaGTCGAATAGCCTTGGAAGGGCCCTGCTTGGGATC +
Preference number: 3 (lower is better)
Translates to: HGASWGSTQPLR*SNSLGRALLGI
Trigger: GATCCCAAGCAGGGCCCTTCCAAGGCTATTCGAGCACCTTAGGGGTTGGGTGGAGCCCCAGCTGGCTCCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 72 bp CCTGGCCCACTATGGCTGATGCCACCCCTGGGCTGGTaGTGCCAAGAGGAGCAGTCAGTAAGCCGTGTTCCT +
Preference number: 3 (lower is better)
Translates to: PGPLWLMPPLGW*CQEEQSVSRVP
Trigger: AGGAACACGGCTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGTGGGCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 72 bp GGACCTGGCCCACTATGGCTGATGCCACCCCTGGGCTaGTGGTGCCAAGAGGAGCAGTCAGTAAGCCGTGTT +
Preference number: 3 (lower is better)
Translates to: GPGPLWLMPPLG*WCQEEQSVSRV
Trigger: AACACGGCTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGTGGGCCAGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR GCA 72 bp GGCCCACTATGGCTGATGCCACCCCTGGGCTGGTGGTaGCAAGAGGAGCAGTCAGTAAGCCGTGTTCCTTCA +
Preference number: 3 (lower is better)
Translates to: GPLWLMPPLGWW*QEEQSVSRVPS
Trigger: TGAAGGAACACGGCTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 72 bp CATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTaGGTTCTTCATTGTGGTTTATTGAAATTTCCCACC +
Preference number: 3 (lower is better)
Translates to: HHGQPSFPRSMA*VLHCGLLKFPT
Trigger: GGTGGGAAATTTCAATAAACCACAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 72 bp ATAGCTGGACAGAACCAGCTTTGTAGAGACACAGTATaGAGGTTCTCACCAGTCACTGAATGCCCGATCCCT +
Preference number: 3 (lower is better)
Translates to: IAGQNQLCRDTV*RFSPVTECPIP
Trigger: AGGGATCGGGCATTCAGTGACTGGTGAGAACCTTCATACTGTGTCTCTACAAAGCTGGTTCTGTCCAGCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 72 bp GCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTaGACTCTCAGAAGTCTTTGTTCTGAGAGCATGGAG +
Preference number: 3 (lower is better)
Translates to: ATVEVVKVKHFC*TLRSLCSESME
Trigger: CTCCATGCTCTCAGAACAAAGACTTCTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CAA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACGAAGGTAAAACACTTTaGCTGAACTCTCAGAAGTCT +
Preference number: 3 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYEGKTL*LNSQKS
Trigger: AGACTTCTGAGAGTTCAGCAAAAGTGTTTTACCTTC...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 72 bp CACGAAGCATGGCCTGAGTTCTTCATTGTGGTTTATTaGAATTTCCCACCAAGGAGAGAGTTTGGGGAAGGT +
Preference number: 3 (lower is better)
Translates to: HEAWPEFFIVVY*NFPPRREFGEG
Trigger: ACCTTCCCCAAACTCTCTCCTTGGTGGGAAATTTCAATAAACCACAATGAAGAACTCAGGCCATGCTTCGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 72 bp AAACCATTAGAACTGCCAGGGAATCTCAAAGGGAAATaGAGGTGGGACAATGGAGGAAATGGCCAATACAAA +
Preference number: 3 (lower is better)
Translates to: KPLELPGNLKGK*RWDNGGNGQYK
Trigger: TTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGGCAGTTCTAATGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CAA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGAAGGTAAAACACTTTaGCTGAACTCTCAGAAGTCT +
Preference number: 3 (lower is better)
Translates to: ISKGNGGGTMEEMANTKREGKTL*LNSQKS
Trigger: AGACTTCTGAGAGTTCAGCAAAAGTGTTTTACCTTC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR TCA 72 bp CCTGATTTGAGGAGGTGGAACCTGAGCATTGTAAGATaGAATAAACCCTTTTCTCCCGGAGAGGCTTTTAAT +
Preference number: 3 (lower is better)
Translates to: PDLRRWNLSIVR*NKPFSPGEAFN
Trigger: ATTAAAAGCCTCTCCGGGAGAAAAGGGTTTATTTCATCTTACAATGCTCAGGTTCCACCTCCTCAAATCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CAA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTCTTCATTGTGGTTTATaGAAATTTCCCACCAAGGAG +
Preference number: 3 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCLHCGL*KFPTKE
Trigger: CTCCTTGGTGGGAAATTTCAATAAACCACAATGAAG...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CCA 72 bp TGCATGCAGCTTAGTTCCCATATCTTTATGTTCATATaGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: CMQLSSHIFMFI*YRWTSVCVCVC
Trigger: ACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAGATATGGGAACTAAGCTGCATGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR-3UTR CAA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGGGCCTGAGTTCTTCATaGTGGTTTATTGAAATTTCC +
Preference number: 3 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVGLSSS*WFIEIS
Trigger: GGAAATTTCAATAAACCACAATGAAGAACTCAGGCC...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR GCA 72 bp ACTAGGACACATGTATGCATTCATAGCAGGCTAGCTTaGATGCAGCTTAGTTCCCATATCTTTATGTTCATA +
Preference number: 3 (lower is better)
Translates to: TRTHVCIHSRLA*MQLSSHIFMFI
Trigger: TATGAACATAAAGATATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR GCA 72 bp ATTCAGACAATCCAGCTTGTGGTAGTTTGTTATACCTaGACAAACAGACTAGGACACATGTATGCATTCATA +
Preference number: 3 (lower is better)
Translates to: IQTIQLVVVCYT*TNRLGHMYAFI
Trigger: TATGAATGCATACATGTGTCCTAGTCTGTTTGTGCAGGTATAACAAACTACCACAAGCTGGATTGTCTGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGCCAGCCATCCAAGCATaGCTCGGTGGCCCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEPAIQA*LGGPLG
Trigger: ACCCAGGGGGCCACCGAGCCATGCTTGGATGGCTGG...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCATCAGGAGGAAGCCCTaGGTGATGCGCCGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSIRRKP*VMRRPR
Trigger: TCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGAT...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTCCAAGCATGGCTCGGTaGCCCCCTGGGTGTCATTGG +
Preference number: 4 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSPSMAR*PPGCHW
Trigger: CCAATGACACCCAGGGGGCCACCGAGCCATGCTTGG...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCCCAAGCATGGCTCGGTaGCCCCCTGGGTGTCATTGG +
Preference number: 4 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSPSMAR*PPGCHW
Trigger: CCAATGACACCCAGGGGGCCACCGAGCCATGCTTGG...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCCTCAGGCTTCCCGTTTaGGCCCAAGGGGAGTACCCA +
Preference number: 4 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSLRLPV*AQGEYP
Trigger: TGGGTACTCCCCTTGGGCCCAAACGGGAAGCCTGAG...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGTGGCCCGCGTGGAGGTaGGTACCCATTCCACATTCA +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEWPAWR*VPIPHS
Trigger: TGAATGTGGAATGGGTACCCACCTCCACGCGGGCCA...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp ACTATGGCTGATGCCACCCCTGGGCTGGTGGTGCCAAGAGGAGCAGTCAGTAAGCGGGATTGTCTGGGATaGCTTTTCTGCTTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: TMADATPGLVVPRGAVSKRDCLG*LFCFWL
Trigger: GAGCCAGAAGCAGAAAAGGCATCCCAGACAATCCCG...CTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGCCAGGCCAGGCAGAATaGATTGACCAATGGTGTAGC +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEPGQAE*IDQWCS
Trigger: GCTACACCATTGGTCAATTCATTCTGCCTGGCCTGG...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTCTGAAGACACAAAGATaGGGGCCAGGATGGCCACTC +
Preference number: 4 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSLKTQR*GPGWPL
Trigger: GAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGGAAAGAAGGCAGCACTaGCTCCCAGTAGAGTCATGG +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEERRQH*LPVESW
Trigger: CCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTC...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GTTGTGGGCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTGAACTCTCAGGGCTCGGTGGCCCCCTaGGTGTCATTGGGAAGACTG +
Preference number: 4 (lower is better)
Translates to: VVGYGGGGEGKTLLLNSQGSVAP*VSLGRL
Trigger: CAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCC...CTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGCCCACAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ACTATGGCTGATGCCACCCCTGGGCTGGTGGTGCCAAGAGGAGCAGTCAGTAAGCCCACTCTGTCACAATaGTGTCTCTGGTGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: TMADATPGLVVPRGAVSKPTLSQ*CLWCCC
Trigger: ACAACAGCACCAGAGACACCATTGTGACAGAGTGGG...CTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGCCAGCGTATGGACTCTaGTACCCACCAGGACAACAA +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEPAYGL*YPPGQQ
Trigger: TTGTTGTCCTGGTGGGTACCAGAGTCCATACGCTGG...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGCCAGTATACCTGCCATaGAGACTGACTGTGCCATCT +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEPVYLP*RLTVPS
Trigger: AGATGGCACAGTCAGTCTTCATGGCAGGTATACTGG...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTGGCGGGCGACAGTGGTaGTCAGGGGTGGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCGGRQW*SGVVAV
Trigger: CACAGCCACCACCCCTGACCACCACTGTCGCCCGCC...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGCTCTAGAGAGGCGTTaGGGGGCGGGCGACAGTGGT +
Preference number: 4 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRALERR*GAGDSG
Trigger: ACCACTGTCGCCCGCCCCCCAACGCCTCTCTAGAGC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ACTATGGCTGATGCCACCCCTGGGCTGGTGGTGCCAAGAGGAGCAGTCAGTAAGTCACAATGGTGTCTCTaGTGCTGTTGTAGATCCAGC +
Preference number: 4 (lower is better)
Translates to: TMADATPGLVVPRGAVSKSQWCL*CCCRSS
Trigger: GCTGGATCTACAACAGCACCAGAGACACCATTGTGA...CTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGATCAGGAGGAAGCCCTaGGTGATGCGCCGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQIRRKP*VMRRPR
Trigger: TCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGAT...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCACTGGAAGGGGCCCATaGTTCCAACACGGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: GSEATMPSEHGTKPPTESTGRGP*FQHGPE
Trigger: TTCTGGACCGTGTTGGAAGCATGGGCCCCTTCCAGT...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CTTTATGTTCATATGGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGGGCGGGCGACAGTGGTaGTCAGGGGTGGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: LYVHMVQMDKCVCVCVCVGGRQW*SGVVAV
Trigger: CACAGCCACCACCCCTGACCACCACTGTCGCCCGCC...CACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GTTGTGGGCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTGAACTCTCAGCCCCCTGGGTGTCATTaGGAAGACTGGCGTTTGGCA +
Preference number: 4 (lower is better)
Translates to: VVGYGGGGEGKTLLLNSQPPGCH*EDWRLA
Trigger: TGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGG...CTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGCCCACAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGGCTCGGTGGCCCCCTaGGTGTCATTGGGAAGACTG +
Preference number: 4 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRGSVAP*VSLGRL
Trigger: CAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTCCCACTCTGTCACAATaGTGTCTCTGGTGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSPTLSQ*CLWCCC
Trigger: ACAACAGCACCAGAGACACCATTGTGACAGAGTGGG...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGATATTTGACCTTGGCTaGGGTGATGTCCTTCTGCAA +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEIFDLG*GDVLLQ
Trigger: TTGCAGAAGGACATCACCTCAGCCAAGGTCAAATAT...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GTTGTGGGCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTGAACTCTCAGACTGGAAGGGGCCCATaGTTCCAACACGGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: VVGYGGGGEGKTLLLNSQTGRGP*FQHGPE
Trigger: TTCTGGACCGTGTTGGAAGCATGGGCCCCTTCCAGT...CTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGCCCACAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GTTGTGGGCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTGAACTCTCAGACTGGAGCCACTGGCTaGCAGCAAGAGATAGCTCCA +
Preference number: 4 (lower is better)
Translates to: VVGYGGGGEGKTLLLNSQTGATG*QQEIAP
Trigger: TGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGT...CTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGCCCACAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCCGTGATTTTCACCAGTaGGGCTATCATACTTCCCAC +
Preference number: 4 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSRDFHQ*GYHTSH
Trigger: GTGGGAAGTATGATAGCCCCACTGGTGAAAATCACG...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ACTATGGCTGATGCCACCCCTGGGCTGGTGGTGCCAAGAGGAGCAGTCAGTAAGGTTTTCTTGGTTTGCTaGTACCAGTCTTGTATGTCC +
Preference number: 4 (lower is better)
Translates to: TMADATPGLVVPRGAVSKVFLVC*YQSCMS
Trigger: GGACATACAAGACTGGTACCAGCAAACCAAGAAAAC...CTTACTGACTGCTCCTCTTGGCACCACCAGCCCAGGGGTGGCATCAGCCATAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACCCAGGCCAGGCAGAATaGATTGACCAATGGTGTAGC +
Preference number: 4 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYPGQAE*IDQWCS
Trigger: GCTACACCATTGGTCAATTCATTCTGCCTGGCCTGG...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGGCTGTTCTCAAGAGCTaGATTTCTGAAGACACAAAG +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEAVLKS*ISEDTK
Trigger: CTTTGTGTCTTCAGAAATGCAGCTCTTGAGAACAGC...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp ATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTTCATTGTGGTTTATGAAAGAAGGCAGCACTaGCTCCCAGTAGAGTCATGG +
Preference number: 4 (lower is better)
Translates to: MASPLSHEAWPEFFIVVYERRQH*LPVESW
Trigger: CCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTC...ATAAACCACAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAACTCAGGCTTCCCGTTTaGGCCCAAGGGGAGTACCCA +
Preference number: 4 (lower is better)
Translates to: REFGEGKRKPLELPGNLKLRLPV*AQGEYP
Trigger: TGGGTACTCCCCTTGGGCCCAAACGGGAAGCCTGAG...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGCCAGCCATCCAAGCATaGCTCGGTGGCCCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVPAIQA*LGGPLG
Trigger: ACCCAGGGGGCCACCGAGCCATGCTTGGATGGCTGG...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACCCAGCGTATGGACTCTaGTACCCACCAGGACAACAA +
Preference number: 4 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYPAYGL*YPPGQQ
Trigger: TTGTTGTCCTGGTGGGTACCAGAGTCCATACGCTGG...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGCCTGCTTTGTTTTCTTaGTTTGCTGGTACCAGTCTT +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEPALFS*FAGTSL
Trigger: AAGACTGGTACCAGCAAACCAAGAAAACAAAGCAGG...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGGCGGCCAAACCTGTCTaGCAGTTCTCCAAACACAGG +
Preference number: 4 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQAAKPV*QFSKHR
Trigger: CCTGTGTTTGGAGAACTGTCAGACAGGTTTGGCCGC...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGTCAGCTCCTCCACAGTaGGCTTTTCCCCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQSAPPQ*AFPLPP
Trigger: AGGAGGAAGGGGAAAAGCTCACTGTGGAGGAGCTGA...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGGGAGTATGTAGATGTTaGCTCCAAATTCTTCTACTC +
Preference number: 4 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEGVCRC*LQILLL
Trigger: GAGTAGAAGAATTTGGAGTCAACATCTACATACTCC...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGCTGAAGACACAAAGATaGGGGCCAGGATGGCCACTC +
Preference number: 4 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRLKTQR*GPGWPL
Trigger: GAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCCAAGAGCTGCATTTCTaGAGACACAAAGATGAGGGC +
Preference number: 4 (lower is better)
Translates to: GSEATMPSEHGTKPPTESQELHF*RHKDEG
Trigger: GCCCTCATCTTTGTGTCTTCAGAAATGCAGCTCTTG...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATAGGTCAGGATGGGCTTaGGGCCAAACCTGTCTGACA +
Preference number: 4 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHRSGWA*GQTCLT
Trigger: TGTCAGACAGGTTTGGCCGCAAGCCCATCCTGACCT...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GAGGAAACCATTAGAACTGCCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAACGGGATTGTCTGGGATaGCTTTTCTGCTTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: EETIRTARESQREMEVGQRDCLG*LFCFWL
Trigger: GAGCCAGAAGCAGAAAAGGCATCCCAGACAATCCCG...TTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGTCACATGCAGGTACTaGAAGGGGCCCATGCTTCCA +
Preference number: 4 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRVTCRY*KGPMLP
Trigger: TGGAAGCATGGGCCCCTTCCAGTACCTGCATGTGAC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCCCCTGGGTGTCATTaGGAAGACTGGCGTTTGGCA +
Preference number: 4 (lower is better)
Translates to: NFPPRREFGEGKRKPLELPPGCH*EDWRLA
Trigger: TGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGG...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGTCAGCTCCTCCACAGTaGGCTTTTCCCCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: NFPPRREFGEGKRKPLELSAPPQ*AFPLPP
Trigger: AGGAGGAAGGGGAAAAGCTCACTGTGGAGGAGCTGA...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp CACATGTCCACATCATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTGGAGTATGTAGATGTTaGCTCCAAATTCTTCTACTC +
Preference number: 4 (lower is better)
Translates to: HMSTSWPALFPTKHGLSSGVCRC*LQILLL
Trigger: GAGTAGAAGAATTTGGAGTCAACATCTACATACTCC...AGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCATGATGTGGACATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTAGGTCAGGATGGGCTTaGGGCCAAACCTGTCTGACA +
Preference number: 4 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCRSGWA*GQTCLT
Trigger: TGTCAGACAGGTTTGGCCGCAAGCCCATCCTGACCT...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGAGAAATGCCCGAGATaGTGCAGCCACACAGGAATC +
Preference number: 4 (lower is better)
Translates to: ISKGNGGGTMEEMANTKREKCPR*CSHTGI
Trigger: GATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTGTCACATGCAGGTACTaGAAGGGGCCCATGCTTCCA +
Preference number: 4 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCVTCRY*KGPMLP
Trigger: TGGAAGCATGGGCCCCTTCCAGTACCTGCATGTGAC...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACTCACAATGGTGTCTCTaGTGCTGTTGTAGATCCAGC +
Preference number: 4 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYSQWCL*CCCRSS
Trigger: GCTGGATCTACAACAGCACCAGAGACACCATTGTGA...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CTTTATGTTCATATGGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCCGCGTGGAGGTaGGTACCCATTCCACATTCA +
Preference number: 4 (lower is better)
Translates to: LYVHMVQMDKCVCVCVCVWPAWR*VPIPHS
Trigger: TGAATGTGGAATGGGTACCCACCTCCACGCGGGCCA...CACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp ATGGCCAGCCCTCTTTCCCACGAAGCATGGCCTGAGTTCTTCATTGTGGTTTATTTCAGCGGGATTGTCTaGGATGCCTTTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: MASPLSHEAWPEFFIVVYFSGIV*DAFSAS
Trigger: AGAAGCAGAAAAGGCATCCCAGACAATCCCGCTGAA...ATAAACCACAATGAAGAACTCAGGCCATGCTTCGTGGGAAAGAGGGCTGGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATACAACAAGGAGAAGATaGAGAAGGCAGCAGACACGG +
Preference number: 4 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHTTRRR*RRQQTR
Trigger: CCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGT...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGACAACAAGGAGAAGATaGAGAAGGCAGCAGACACGG +
Preference number: 4 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQTTRRR*RRQQTR
Trigger: CCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGT...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAAGAGAAATGCCCGAGATaGTGCAGCCACACAGGAATC +
Preference number: 4 (lower is better)
Translates to: REFGEGKRKPLELPGNLKEKCPR*CSHTGI
Trigger: GATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTC...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCGCTGTTCTCAAGAGCTaGATTTCTGAAGACACAAAG +
Preference number: 4 (lower is better)
Translates to: GSEATMPSEHGTKPPTESAVLKS*ISEDTK
Trigger: CTTTGTGTCTTCAGAAATGCAGCTCTTGAGAACAGC...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GAGGAAACCATTAGAACTGCCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATTAGGGATGAAGGGCTaGAGTTCTCCCGTGATTTTC +
Preference number: 4 (lower is better)
Translates to: EETIRTARESQREMEVGQLGMKG*SSPVIF
Trigger: GAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAA...TTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCTTTGTTTTCTTGGTTTaGTGGTACCAGTCTTGTATG +
Preference number: 4 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSFVFLV*WYQSCM
Trigger: CATACAAGACTGGTACCAGCAAACCAAGAAAACAAA...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATTCTCCTTCAGTTTGTTaGAGCCGCATACCAAGTCCC +
Preference number: 4 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHSPSVC*SRIPSP
Trigger: GGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGA...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAACCAGTATACCTGCCATaGAGACTGACTGTGCCATCT +
Preference number: 4 (lower is better)
Translates to: REFGEGKRKPLELPGNLKPVYLP*RLTVPS
Trigger: AGATGGCACAGTCAGTCTTCATGGCAGGTATACTGG...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACTGTCTTCAGAGCCTTTaGGAATTTTCCAGACAGAAC +
Preference number: 4 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYCLQSL*EFSRQN
Trigger: GTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACA...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGTGTCCTTCTGCAAGTTaGACTTCAGCTCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: NFPPRREFGEGKRKPLELCPSAS*TSAPPQ
Trigger: CTGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACA...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGAGGTGATGTCCTTCTaGAAGTTGAACTTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: ISKGNGGGTMEEMANTKREVMSF*KLNFSS
Trigger: GGAGCTGAAGTTCAACTTGCAGAAGGACATCACCTC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATAAGGTAGCCACACGTTaGAGTGTCTTCAGAGCCTTT +
Preference number: 4 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHKVATR*SVFRAF
Trigger: AAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTT...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACGTTTTCTTGGTTTGCTaGTACCAGTCTTGTATGTCC +
Preference number: 4 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYVFLVC*YQSCMS
Trigger: GGACATACAAGACTGGTACCAGCAAACCAAGAAAAC...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAAGAGGTGATGTCCTTCTaGAAGTTGAACTTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: REFGEGKRKPLELPGNLKEVMSF*KLNFSS
Trigger: GGAGCTGAAGTTCAACTTGCAGAAGGACATCACCTC...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTAAGGTAGCCACACGTTaGAGTGTCTTCAGAGCCTTT +
Preference number: 4 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCKVATR*SVFRAF
Trigger: AAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTT...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAACGTGATTTTCACCAGTaGGGCTATCATACTTCCCAC +
Preference number: 4 (lower is better)
Translates to: REFGEGKRKPLELPGNLKRDFHQ*GYHTSH
Trigger: GTGGGAAGTATGATAGCCCCACTGGTGAAAATCACG...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTTTCAGCGGGATTGTCTaGGATGCCTTTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCFSGIV*DAFSAS
Trigger: AGAAGCAGAAAAGGCATCCCAGACAATCCCGCTGAA...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGTGTCCTTCTGCAAGTTaGACTTCAGCTCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVCPSAS*TSAPPQ
Trigger: CTGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACA...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGTCTCCTTCAGTTTGTTaGAGCCGCATACCAAGTCCC +
Preference number: 4 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVSPSVC*SRIPSP
Trigger: GGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGA...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTTGTCTTCAGAGCCTTTaGGAATTTTCCAGACAGAAC +
Preference number: 4 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCCLQSL*EFSRQN
Trigger: GTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACA...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp CTTTATGTTCATATGGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGATATTTGACCTTGGCTaGGGTGATGTCCTTCTGCAA +
Preference number: 4 (lower is better)
Translates to: LYVHMVQMDKCVCVCVCVIFDLG*GDVLLQ
Trigger: TTGCAGAAGGACATCACCTCAGCCAAGGTCAAATAT...CACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR TCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGCAAGAGCTGCATTTCTaGAGACACAAAGATGAGGGC +
Preference number: 4 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVQELHF*RHKDEG
Trigger: GCCCTCATCTTTGTGTCTTCAGAAATGCAGCTCTTG...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGTTAGGGATGAAGGGCTaGAGTTCTCCCGTGATTTTC +
Preference number: 4 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVLGMKG*SSPVIF
Trigger: GAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAA...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CCA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAACCTGCTTTGTTTTCTTaGTTTGCTGGTACCAGTCTT +
Preference number: 4 (lower is better)
Translates to: REFGEGKRKPLELPGNLKPALFS*FAGTSL
Trigger: AAGACTGGTACCAGCAAACCAAGAAAACAAAGCAGG...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR GCA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGTTTGTTTTCTTGGTTTaGTGGTACCAGTCTTGTATG +
Preference number: 4 (lower is better)
Translates to: NFPPRREFGEGKRKPLELFVFLV*WYQSCM
Trigger: CATACAAGACTGGTACCAGCAAACCAAGAAAACAAA...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
3UTR CAA 72 bp CAGTTCTGTTATTCAGACAATCCAGCTTGTGGTAGTTaGTTATACCTGCACAAACAGACTAGGACACATGTA +
Preference number: 4 (lower is better)
Translates to: QFCYSDNPACGS*LYLHKQTRTHV
Trigger: TACATGTGTCCTAGTCTGTTTGTGCAGGTATAACAAACTACCACAAGCTGGATTGTCTGAATAACAGAACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp TCGGTGGCCCCCTGGGTGTCATTGGGAAGACTGGCGTTTGGCAGATaGACGAAGCGGAGACACTTCTCAGGCTTCCCGTTTGGGCCCAAG +
Preference number: 5 (lower is better)
Translates to: SVAPWVSLGRLAFGR*TKRRHFSGFPFGPK
Trigger: CTTGGGCCCAAACGGGAAGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 90 bp GCATGGCTCGGTGGCCCCCTGGGTGTCATTGGGAAGACTGGCGTTTaGCAGATGCACGAAGCGGAGACACTTCTCAGGCTTCCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: AWLGGPLGVIGKTGV*QMHEAETLLRLPVW
Trigger: CCAAACGGGAAGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCCATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp ATAGACAGTGAGGCTGGGGCTGAAGGCAGCACTGGAGCCACTGGCTaGCAGCAAGAGATAGCTCCAGGTCAGGATGGGCTTGCGGCCAAA +
Preference number: 5 (lower is better)
Translates to: IDSEAGAEGSTGATG*QQEIAPGQDGLAAK
Trigger: TTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 90 bp CATCCAAGCATGGCTCGGTGGCCCCCTGGGTGTCATTGGGAAGACTaGCGTTTGGCAGATGCACGAAGCGGAGACACTTCTCAGGCTTCC +
Preference number: 5 (lower is better)
Translates to: HPSMARWPPGCHWED*RLADARSGDTSQAS
Trigger: GGAAGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCCATGCTTGGATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 90 bp CACTGGAGCCACTGGCTGCCAGCAAGAGATAGCTCCAGGTCAGGATaGGCTTGCGGCCAAACCTGTCTGACAGTTCTCCAAACACAGGTC +
Preference number: 5 (lower is better)
Translates to: HWSHWLPARDSSRSG*ACGQTCLTVLQTQV
Trigger: GACCTGTGTTTGGAGAACTGTCAGACAGGTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 90 bp GCCAGCGTATGGACTCTGGTACCCACCAGGACAACAAGGAGAAGATaGAGAAGGCAGCAGACACGGACAACTGTAGCCAGCGCCACTGAG +
Preference number: 5 (lower is better)
Translates to: ASVWTLVPTRTTRRR*RRQQTRTTVASATE
Trigger: CTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTGGTGGGTACCAGAGTCCATACGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp TTGTGGTTGGCTATTCCGAGGATTGGGAGGGCCAGCAAGGTCACATaGAGGTACTGGAAGGGGCCCATGCTTCCAACACGGTCCAGAATC +
Preference number: 5 (lower is better)
Translates to: LWLAIPRIGRASKVT*RYWKGPMLPTRSRI
Trigger: GATTCTGGACCGTGTTGGAAGCATGGGCCCCTTCCAGTACCTGCATGTGACCTTGCTGGCCCTCCCAATCCTCGGAATAGCCAACCACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCGCCCCCTGGGTGTCATaGGGAAGACTGGCGTTTGGC +
Preference number: 5 (lower is better)
Translates to: GSEATMPSEHGTKPPTESAPWVS*GRLAFG
Trigger: GCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGC...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GTTGTGGGCTACGGTGGAGGTGGTGAAGGTAAAACACTTTTGCTGAACTCTCAGTCTCAGGCTTCCCGTTaGGGCCCAAGGGGAGTACCC +
Preference number: 5 (lower is better)
Translates to: VVGYGGGGEGKTLLLNSQSQASR*GPRGVP
Trigger: GGGTACTCCCCTTGGGCCCAAACGGGAAGCCTGAGA...CTGAGAGTTCAGCAAAAGTGTTTTACCTTCACCACCTCCACCGTAGCCCACAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGGCCATCTCCTTCAGTTaGTTGGAGCCGCATACCAAG +
Preference number: 5 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEAISFS*LEPHTK
Trigger: CTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGC...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGAGATGTCCTTCTGCAAGTaGAACTTCAGCTCCTCCACA +
Preference number: 5 (lower is better)
Translates to: GSHQSLNARSLDPGWTSEMSFCK*NFSSST
Trigger: TGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACAT...CTCGGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp GACAGGCATCCCTTCCCAAATACAGCCAGTGCTGTTCTCAAGAGCTaGATTTCTGAAGACACAAAGATGAGGGCCAGGATGGCCACTCCT +
Preference number: 5 (lower is better)
Translates to: DRHPFPNTASAVLKS*ISEDTKMRARMATP
Trigger: AGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAGAAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCAAGATCTGTAGCAAGTaGTGGTTGGCTATTCCGAGG +
Preference number: 5 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSKICSK*WLAIPR
Trigger: CCTCGGAATAGCCAACCACAACTTGCTACAGATCTT...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGGCCCCCTGGGTGTCATaGGGAAGACTGGCGTTTGGC +
Preference number: 5 (lower is better)
Translates to: NFPPRREFGEGKRKPLELAPWVS*GRLAFG
Trigger: GCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGC...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGCAGGTCAGGATGGGCTaGCGGCCAAACCTGTCTGAC +
Preference number: 5 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRQVRMG*RPNLSD
Trigger: GTCAGACAGGTTTGGCCGCAAGCCCATCCTGACCTG...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 90 bp CTTGCCGTTGAAGGTAGCCACACGTTGGAGTGTCTTCAGAGCCTTTaGGAATTTTCCAGACAGAACCAGCCAGCGTATGGACTCTGGTAC +
Preference number: 5 (lower is better)
Translates to: LAVEGSHTLECLQSL*EFSRQNQPAYGLWY
Trigger: GTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp CCCAGTAGAGTCATGGTCCCAAAGATGACATTAGGGATGAAGGGCTaGAGTTCTCCCGTGATTTTCACCAGTGGGGCTATCATACTTCCC +
Preference number: 5 (lower is better)
Translates to: PSRVMVPKMTLGMKG*SSPVIFTSGAIILP
Trigger: GGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGTGGGAAGACTGGCGTTaGGCAGATGCACGAAGCGGA +
Preference number: 5 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQWEDWR*ADARSG
Trigger: TCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCA...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp CTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGCTTTGTCAGGTCAGGATGGGCTaGCGGCCAAACCTGTCTGAC +
Preference number: 5 (lower is better)
Translates to: LSGNGLVPDEIAGQNQLCQVRMG*RPNLSD
Trigger: GTCAGACAGGTTTGGCCGCAAGCCCATCCTGACCTG...ACAAAGCTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCGATACCCATACCTGTTaGCCTGAGGACTGTAGGGTA +
Preference number: 5 (lower is better)
Translates to: GSEATMPSEHGTKPPTESDTHTC*PEDCRV
Trigger: TACCCTACAGTCCTCAGGCAAACAGGTATGGGTATC...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 90 bp CTGACAGTTCTCCAAACACAGGTCCTCCAACCAGTATACCTGCCATaGAGACTGACTGTGCCATCTCCTTCAGTTTGTTGGAGCCGCATA +
Preference number: 5 (lower is better)
Translates to: LTVLQTQVLQPVYLP*RLTVPSPSVCWSRI
Trigger: TATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp GTCTTCAGCGGGATTGTCTGGGATGCCTTTTCTGCTTCTGGCTCCTaGTTTGTTTTCTTGGTTTGCTGGTACCAGTCTTGTATGTCCTCG +
Preference number: 5 (lower is better)
Translates to: VFSGIVWDAFSASGS*FVFLVCWYQSCMSS
Trigger: CGAGGACATACAAGACTGGTACCAGCAAACCAAGAAAACAAAGCAGGAGCCAGAAGCAGAAAAGGCATCCCAGACAATCCCGCTGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 90 bp GACATTAGGGATGAAGGGCTGCAGTTCTCCCGTGATTTTCACCAGTaGGGCTATCATACTTCCCACTCGAGCCCATATGTTACTGATACC +
Preference number: 5 (lower is better)
Translates to: DIRDEGLQFSRDFHQ*GYHTSHSSPYVTDT
Trigger: GGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp AGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGCCAGGGAATCTCAAATGGCTATTCCGAGGATaGGGAGGGCCAGCAAGGTCA +
Preference number: 5 (lower is better)
Translates to: REFGEGKRKPLELPGNLKWLFRG*GGPARS
Trigger: TGACCTTGCTGGCCCTCCCAATCCTCGGAATAGCCA...TTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GGCTCTGAGGCAACAATGCCTAGTGAGCATGGAACAAAACCTCCAACTGAGAGCAAGATCTGTAGCAAGTaGTGGTTGGCTATTCCGAGG +
Preference number: 5 (lower is better)
Translates to: GSEATMPSEHGTKPPTESKICSK*WLAIPR
Trigger: CCTCGGAATAGCCAACCACAACTTGCTACAGATCTT...GCTCTCAGTTGGAGGTTTTGTTCCATGCTCACTAGGCATTGTTGCCTCAGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GAAGGTTCTCACCAGTCACTGAATGCCCGATCCCTTGACCCAGGTTGGACTTCCGTGTCTTCAGAGCCTTaGAGAATTTTCCAGACAGAA +
Preference number: 5 (lower is better)
Translates to: EGSHQSLNARSLDPGWTSVSSEP*RIFQTE
Trigger: TTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACAC...GGAAGTCCAACCTGGGTCAAGGGATCGGGCATTCAGTGACTGGTGAGAACCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp CTTTATGTTCATATGGTACAGATGGACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGGGAAGACTGGCGTTaGGCAGATGCACGAAGCGGA +
Preference number: 5 (lower is better)
Translates to: LYVHMVQMDKCVCVCVCVWEDWR*ADARSG
Trigger: TCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCA...CACACACACACACACACACACACACTTGTCCATCTGTACCATATGAACATAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 90 bp AAGTCAGATAAGCCATATTTGACCTTGGCTGAGGTGATGTCCTTCTaGAAGTTGAACTTCAGCTCCTCCACAGTGAGCTTTTCCCCTTCC +
Preference number: 5 (lower is better)
Translates to: KSDKPYLTLAEVMSF*KLNFSSSTVSFSPS
Trigger: GGAAGGGGAAAAGCTCACTGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp AAGCACCCTCTCAAATCTCTAAATACATACTTGAGAGCAGTCATTAGCTCTGTGTGGCTATTCCGAGGATaGGGAGGGCCAGCAAGGTCA +
Preference number: 5 (lower is better)
Translates to: KHPLKSLNTYLRAVISSVWLFRG*GGPARS
Trigger: TGACCTTGCTGGCCCTCCCAATCCTCGGAATAGCCA...CACAGAGCTAATGACTGCTCTCAAGTATGTATTTAGAGATTTGAGAGGGTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp AATTTCCCACCAAGGAGAGAGTTTGGGGAAGGTAAGAGGAAACCATTAGAACTGGCCATCTCCTTCAGTTaGTTGGAGCCGCATACCAAG +
Preference number: 5 (lower is better)
Translates to: NFPPRREFGEGKRKPLELAISFS*LEPHTK
Trigger: CTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGC...CAGTTCTAATGGTTTCCTCTTACCTTCCCCAAACTCTCTCCTTGGTGGGAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GAGGAAACCATTAGAACTGCCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAAATGTCCTTCTGCAAGTaGAACTTCAGCTCCTCCACA +
Preference number: 5 (lower is better)
Translates to: EETIRTARESQREMEVGQMSFCK*NFSSST
Trigger: TGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACAT...TTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGGCAGTTCTAATGGTTTCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGATACCCATACCTGTTaGCCTGAGGACTGTAGGGTA +
Preference number: 5 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRDTHTC*PEDCRV
Trigger: TACCCTACAGTCCTCAGGCAAACAGGTATGGGTATC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp CCAGGGAATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACTCCTGCTTTGTTTTCTaGGTTTGCTGGTACCAGTCT +
Preference number: 5 (lower is better)
Translates to: PGNLKGKWRWDNGGNGQYSCFVF*VCWYQS
Trigger: AGACTGGTACCAGCAAACCAAGAAAACAAAGCAGGA...GTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGATTCCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp GCTTTGCTCTCAGGAAATGGATTAGTGCCTGATGAAATAGCTGGACAGAACCAGGCCAGGCAGAATGAATaGACCAATGGTGTAGCAGTA +
Preference number: 5 (lower is better)
Translates to: ALLSGNGLVPDEIAGQNQARQNE*TNGVAV
Trigger: TACTGCTACACCATTGGTCAATTCATTCTGCCTGGC...CTGGTTCTGTCCAGCTATTTCATCAGGCACTAATCCATTTCCTGAGAGCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp AGGACACATGTATGCATTCATAGCAGGCTAGCTTGCATGCAGCTTAGTTCCCATGCCAGGCAGAATGAATaGACCAATGGTGTAGCAGTA +
Preference number: 5 (lower is better)
Translates to: RTHVCIHSRLACMQLSSHARQNE*TNGVAV
Trigger: TACTGCTACACCATTGGTCAATTCATTCTGCCTGGC...ATGGGAACTAAGCTGCATGCAAGCTAGCCTGCTATGAATGCATACATGTGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGTCCTGCTTTGTTTTCTaGGTTTGCTGGTACCAGTCT +
Preference number: 5 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRSCFVF*VCWYQS
Trigger: AGACTGGTACCAGCAAACCAAGAAAACAAAGCAGGA...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS-3UTR CAA 90 bp ATCTCAAAGGGAAATGGAGGTGGGACAATGGAGGAAATGGCCAATACAAAGAGGGTGTCTTCAGAGCCTTaGAGAATTTTCCAGACAGAA +
Preference number: 5 (lower is better)
Translates to: ISKGNGGGTMEEMANTKRVSSEP*RIFQTE
Trigger: TTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACAC...CCTCTTTGTATTGGCCATTTCCTCCATTGTCCCACCTCCATTTCCCTTTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 90 bp CGTTTGGCAGATGCACGAAGCGGAGACACTTCTCAGGCTTCCCGTTaGGGCCCAAGGGGAGTACCCAGGGCTCTAGAGAGGCGTTGGGGG +
Preference number: 6 (lower is better)
Translates to: RLADARSGDTSQASR*GPRGVPRALERRWG
Trigger: CCCCCAACGCCTCTCTAGAGCCCTGGGTACTCCCCTTGGGCCCAAACGGGAAGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp GAGGCTGGGGCTGAAGGCAGCACTGGAGCCACTGGCTaGCAGCAAGAGATAGCTCCAGGTCAGGATGGGCTT +
Preference number: 6 (lower is better)
Translates to: EAGAEGSTGATG*QQEIAPGQDGL
Trigger: AAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp CCATCCAAGCATGGCTCGGTGGCCCCCTGGGTGTCATaGGGAAGACTGGCGTTTGGCAGATGCACGAAGCGG +
Preference number: 6 (lower is better)
Translates to: PSKHGSVAPWVS*GRLAFGRCTKR
Trigger: CCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCCATGCTTGGATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp CATCCAAGCATGGCTCGGTGGCCCCCTGGGTGTCATTaGGAAGACTGGCGTTTGGCAGATGCACGAAGCGGA +
Preference number: 6 (lower is better)
Translates to: HPSMARWPPGCH*EDWRLADARSG
Trigger: TCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCCATGCTTGGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp GATGCACGAAGCGGAGACACTTCTCAGGCTTCCCGTTaGGGCCCAAGGGGAGTACCCAGGGCTCTAGAGAGG +
Preference number: 6 (lower is better)
Translates to: DARSGDTSQASR*GPRGVPRALER
Trigger: CCTCTCTAGAGCCCTGGGTACTCCCCTTGGGCCCAAACGGGAAGCCTGAGAAGTGTCTCCGCTTCGTGCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp CGGTGGCCCCCTGGGTGTCATTGGGAAGACTGGCGTTaGGCAGATGCACGAAGCGGAGACACTTCTCAGGCT +
Preference number: 6 (lower is better)
Translates to: RWPPGCHWEDWR*ADARSGDTSQA
Trigger: AGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 90 bp AGCATGGCTCGGTGGCCCCCTGGGTGTCATTGGGAAGACTGGCGTTaGGCAGATGCACGAAGCGGAGACACTTCTCAGGCTTCCCGTTTG +
Preference number: 6 (lower is better)
Translates to: SMARWPPGCHWEDWR*ADARSGDTSQASRL
Trigger: CAAACGGGAAGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCCATGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp GCTATTCCGAGGATTGGGAGGGCCAGCAAGGTCACATaGAGGTACTGGAAGGGGCCCATGCTTCCAACACGG +
Preference number: 6 (lower is better)
Translates to: AIPRIGRASKVT*RYWKGPMLPTR
Trigger: CCGTGTTGGAAGCATGGGCCCCTTCCAGTACCTGCATGTGACCTTGCTGGCCCTCCCAATCCTCGGAATAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp GGTGGCCCCCTGGGTGTCATTGGGAAGACTGGCGTTTaGCAGATGCACGAAGCGGAGACACTTCTCAGGCTT +
Preference number: 6 (lower is better)
Translates to: GGPLGVIGKTGV*QMHEAETLLRL
Trigger: AAGCCTGAGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp ATGGCTCGGTGGCCCCCTGGGTGTCATTGGGAAGACTaGCGTTTGGCAGATGCACGAAGCGGAGACACTTCT +
Preference number: 6 (lower is better)
Translates to: MARWPPGCHWED*RLADARSGDTS
Trigger: AGAAGTGTCTCCGCTTCGTGCATCTGCCAAACGCCAGTCTTCCCAATGACACCCAGGGGGCCACCGAGCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp CACTGGCTGCCAGCAAGAGATAGCTCCAGGTCAGGATaGGCTTGCGGCCAAACCTGTCTGACAGTTCTCCAA +
Preference number: 6 (lower is better)
Translates to: HWLPARDSSRSG*ACGQTCLTVLQ
Trigger: TTGGAGAACTGTCAGACAGGTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 72 bp TGGACTCTGGTACCCACCAGGACAACAAGGAGAAGATaGAGAAGGCAGCAGACACGGACAACTGTAGCCAGC +
Preference number: 6 (lower is better)
Translates to: WTLVPTRTTRRR*RRQQTRTTVAS
Trigger: GCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTGGTGGGTACCAGAGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp TCCACAGTGAGCTTTTCCCCTTCCTCCTTCTTGCCGTaGAAGGTAGCCACACGTTGGAGTGTCTTCAGAGCC +
Preference number: 6 (lower is better)
Translates to: STVSFSPSSFLP*KVATRWSVFRA
Trigger: GGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp AGCTCCTCCACAGTGAGCTTTTCCCCTTCCTCCTTCTaGCCGTTGAAGGTAGCCACACGTTGGAGTGTCTTC +
Preference number: 6 (lower is better)
Translates to: SSSTVSFSPSSF*PLKVATRWSVF
Trigger: GAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 72 bp CTGTTCTCAAGAGCTGCATTTCTGAAGACACAAAGATaGGGGCCAGGATGGCCACTCCTGCCAGGATCAGGA +
Preference number: 6 (lower is better)
Translates to: LFSRAAFLKTQR*GPGWPLLPGSG
Trigger: TCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAGAAATGCAGCTCTTGAGAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp ATACCAAGTCCCACTCTGTCACAATGGTGTCTCTGGTaGTGTTGTAGATCCAGCCATCCAAGCATGGCTCGG +
Preference number: 6 (lower is better)
Translates to: IPSPTLSQWCLW*CCRSSHPSMAR
Trigger: CCGAGCCATGCTTGGATGGCTGGATCTACAACAGCACCAGAGACACCATTGTGACAGAGTGGGACTTGGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp TGTTGGAGCCGCATACCAAGTCCCACTCTGTCACAATaGTGTCTCTGGTGCTGTTGTAGATCCAGCCATCCA +
Preference number: 6 (lower is better)
Translates to: CWSRIPSPTLSQ*CLWCCCRSSHP
Trigger: TGGATGGCTGGATCTACAACAGCACCAGAGACACCATTGTGACAGAGTGGGACTTGGTATGCGGCTCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp AGATCTGTAGCAAGTTGTGGTTGGCTATTCCGAGGATaGGGAGGGCCAGCAAGGTCACATGCAGGTACTGGA +
Preference number: 6 (lower is better)
Translates to: RSVASCGWLFRG*GGPARSHAGTG
Trigger: TCCAGTACCTGCATGTGACCTTGCTGGCCCTCCCAATCCTCGGAATAGCCAACCACAACTTGCTACAGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 90 bp TTCAGCTCCTCCACAGTGAGCTTTTCCCCTTCCTCCTTCTTGCCGTaGAAGGTAGCCACACGTTGGAGTGTCTTCAGAGCCTTTGAGAAT +
Preference number: 6 (lower is better)
Translates to: FSSSTVSFSPSSFLP*KVATRWSVFRAFEN
Trigger: ATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAGGAGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 90 bp TTGAACTTCAGCTCCTCCACAGTGAGCTTTTCCCCTTCCTCCTTCTaGCCGTTGAAGGTAGCCACACGTTGGAGTGTCTTCAGAGCCTTT +
Preference number: 6 (lower is better)
Translates to: LNFSSSTVSFSPSSF*PLKVATRWSVFRAF
Trigger: AAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAGGAGCTGAAGTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 90 bp TGGTACCAGTCTTGTATGTCCTCGATAGTTTCTGGTAAGGGCCGATaGAGGGTCTCAAGCAGAAAGAAGGCAGCACTGCCTCCCAGTAGA +
Preference number: 6 (lower is better)
Translates to: WYQSCMSSIVSGKGR*RVSSRKKAALPPSR
Trigger: TCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTGGTACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp GATGAAGGGCTGCAGTTCTCCCGTGATTTTCACCAGTaGGGCTATCATACTTCCCACTCGAGCCCATATGTT +
Preference number: 6 (lower is better)
Translates to: DEGLQFSRDFHQ*GYHTSHSSPYV
Trigger: AACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 72 bp CTCCAAACACAGGTCCTCCAACCAGTATACCTGCCATaGAGACTGACTGTGCCATCTCCTTCAGTTTGTTGG +
Preference number: 6 (lower is better)
Translates to: LQTQVLQPVYLP*RLTVPSPSVCW
Trigger: CCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 72 bp GAAGGTAGCCACACGTTGGAGTGTCTTCAGAGCCTTTaGGAATTTTCCAGACAGAACCAGCCAGCGTATGGA +
Preference number: 6 (lower is better)
Translates to: EGSHTLECLQSL*EFSRQNQPAYG
Trigger: TCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS TCA 72 bp AAATACAGCCAGTGCTGTTCTCAAGAGCTGCATTTCTaGAGACACAAAGATGAGGGCCAGGATGGCCACTCC +
Preference number: 6 (lower is better)
Translates to: KYSQCCSQELHF*RHKDEGQDGHS
Trigger: GGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAGAAATGCAGCTCTTGAGAACAGCACTGGCTGTATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp CCCTTCCCAAATACAGCCAGTGCTGTTCTCAAGAGCTaGATTTCTGAAGACACAAAGATGAGGGCCAGGATG +
Preference number: 6 (lower is better)
Translates to: PFPNTASAVLKS*ISEDTKMRARM
Trigger: CATCCTGGCCCTCATCTTTGTGTCTTCAGAAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp CCTTCCTCCTTCTTGCCGTTGAAGGTAGCCACACGTTaGAGTGTCTTCAGAGCCTTTGAGAATTTTCCAGAC +
Preference number: 6 (lower is better)
Translates to: PSSFLPLKVATR*SVFRAFENFPD
Trigger: GTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp TCTTGTATGTCCTCGATAGTTTCTGGTAAGGGCCGATaGAGGGTCTCAAGCAGAAAGAAGGCAGCACTGCCT +
Preference number: 6 (lower is better)
Translates to: SCMSSIVSGKGR*RVSSRKKAALP
Trigger: AGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 90 bp GATAAGCCATATTTGACCTTGGCTGAGGTGATGTCCTTCTGCAAGTaGAACTTCAGCTCCTCCACAGTGAGCTTTTCCCCTTCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: DKPYLTLAEVMSFCK*NFSSSTVSFSPSSF
Trigger: GAAGGAGGAAGGGGAAAAGCTCACTGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp GGGATTGTCTGGGATGCCTTTTCTGCTTCTGGCTCCTaGTTTGTTTTCTTGGTTTGCTGGTACCAGTCTTGT +
Preference number: 6 (lower is better)
Translates to: GIVWDAFSASGS*FVFLVCWYQSC
Trigger: ACAAGACTGGTACCAGCAAACCAAGAAAACAAAGCAGGAGCCAGAAGCAGAAAAGGCATCCCAGACAATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp GAATTTTCCAGACAGAACCAGCCAGCGTATGGACTCTaGTACCCACCAGGACAACAAGGAGAAGATGAAGAA +
Preference number: 6 (lower is better)
Translates to: EFSRQNQPAYGL*YPPGQQGEDEE
Trigger: TTCTTCATCTTCTCCTTGTTGTCCTGGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CAA 72 bp TATTTGACCTTGGCTGAGGTGATGTCCTTCTGCAAGTaGAACTTCAGCTCCTCCACAGTGAGCTTTTCCCCT +
Preference number: 6 (lower is better)
Translates to: YLTLAEVMSFCK*NFSSSTVSFSP
Trigger: AGGGGAAAAGCTCACTGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp AAGCCATATTTGACCTTGGCTGAGGTGATGTCCTTCTaGAAGTTGAACTTCAGCTCCTCCACAGTGAGCTTT +
Preference number: 6 (lower is better)
Translates to: KPYLTLAEVMSF*KLNFSSSTVSF
Trigger: AAAGCTCACTGTGGAGGAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS CCA 72 bp TCTGCTTCTGGCTCCTGCTTTGTTTTCTTGGTTTGCTaGTACCAGTCTTGTATGTCCTCGATAGTTTCTGGT +
Preference number: 6 (lower is better)
Translates to: SASGSCFVFLVC*YQSCMSSIVSG
Trigger: ACCAGAAACTATCGAGGACATACAAGACTGGTACCAGCAAACCAAGAAAACAAAGCAGGAGCCAGAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2
CDS GCA 72 bp TTTTCTGCTTCTGGCTCCTGCTTTGTTTTCTTGGTTTaGTGGTACCAGTCTTGTATGTCCTCGATAGTTTCT +
Preference number: 6 (lower is better)
Translates to: FSASGSCFVFLV*WYQSCMSSIVS
Trigger: AGAAACTATCGAGGACATACAAGACTGGTACCAGCAAACCAAGAAAACAAAGCAGGAGCCAGAAGCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010251.11
ENSMUST00000170817.2