Pregenerated sensors for SLC22A30 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052562Ensembl transcript IDs: ENSMUST00000064507.12, ENSMUST00000096269.11, ENSMUST00000120540.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGGAATTTGAGGTGTCAAAAGCCCATCCCAGGCCAGTCTCTCCCTTaGTCTATGAATCATGTTTATATTAGCTGCTTTACCAGGTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: WNLRCQKPIPGQSLP*SMNHVYISCFTRSL Trigger: CAGGGACCTGGTAAAGCAGCTAATATAAACATGATTCATAGACCAAGGGAGAGACTGGCCTGGGATGGGCTTTTGACACCTCAAATTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGGGCCAGTGACACTATTGGAAAACAATAGAATGATAAGTAGGTGTATTGGAGGCCAGTCTCTCCCTTaGTCTATGAATCATGTTTAT | + |
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Preference number: 2 (lower is better) Translates to: LGPVTLLENNRMISRCIGGQSLP*SMNHVY Trigger: ATAAACATGATTCATAGACCAAGGGAGAGACTGGCC...TCCAATACACCTACTTATCATTCTATTGTTTTCCAATAGTGTCACTGGCCCCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGGGCCAGTGACACTATTGGAAAACAATAGAATGATAAGTAGGTGTATTGGAAGTGAACTAAATCACTaGCACATTAAGCAAACCTCC | + |
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Preference number: 2 (lower is better) Translates to: LGPVTLLENNRMISRCIGSELNH*HIKQTS Trigger: GGAGGTTTGCTTAATGTGTCAGTGATTTAGTTCACT...TCCAATACACCTACTTATCATTCTATTGTTTTCCAATAGTGTCACTGGCCCCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR-3UTR CCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGTATAATGTTAATAAATaGCACCAGCTCCAGACACTT | + |
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Preference number: 2 (lower is better) Translates to: EIESDSSNKNDPSRLIVLYNVNK*HQLQTL Trigger: AAGTGTCTGGAGCTGGTGCCATTTATTAACATTATA...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR GCA 72 bp | TCTCTCCCTTGGTCTATGAATCATGTTTATATTAGCTaGTTTACCAGGTCCCTGCTTTTCTATGACCATGAG | + |
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Preference number: 3 (lower is better) Translates to: SLPWSMNHVYIS*FTRSLLFYDHE Trigger: CTCATGGTCATAGAAAAGCAGGGACCTGGTAAAGCAGCTAATATAAACATGATTCATAGACCAAGGGAGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR-3UTR CAA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGGGGCCAGTGACACTATaGGAAAACAATAGAATGATA | + |
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Preference number: 3 (lower is better) Translates to: EIESDSSNKNDPSRLIVLGPVTL*ENNRMI Trigger: TATCATTCTATTGTTTTCCAATAGTGTCACTGGCCC...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR-3UTR CAA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGGGTGTATTGGAGGAATaGTATCATAGGTTGGAATTT | + |
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Preference number: 3 (lower is better) Translates to: EIESDSSNKNDPSRLIVLGVLEE*YHRLEF Trigger: AAATTCCAACCTATGATACAATTCCTCCAATACACC...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCTGTCATTGTCAAGGATaGGGGCCCAGCAGCGATGAT | + |
|
Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFCHCQG*GPSSDD Trigger: ATCATCGCTGCTGGGCCCCCATCCTTGACAATGACA...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR TCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCTTCCCCTCAGGGACATaGGAACCAGCTGAGTTATTC | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFFPSGT*EPAELF Trigger: GAATAACTCAGCTGGTTCTCATGTCCCTGAGGGGAA...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR TCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCTACCAAACATTGCAATaGCTCCCATACCTGTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFYQTLQ*LPYLLP Trigger: GGGCAACAGGTATGGGAGTCATTGCAATGTTTGGTA...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGTGTCATTGTCAAGGATaGGGGCCCAGCAGCGATGAT | + |
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Preference number: 4 (lower is better) Translates to: EIESDSSNKNDPSRLIVLCHCQG*GPSSDD Trigger: ATCATCGCTGCTGGGCCCCCATCCTTGACAATGACA...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| 3UTR CAA 72 bp | TTTGAAGTTGGACTGAATGTCTACCGGGCCCAGAGATaGAAAGTGATAGTTCGAATAAGAATGACCCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: FEVGLNVYRAQR*KVIVRIRMTPQ Trigger: TTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTCTGGGCCCGGTAGACATTCAGTCCAACTTCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR TCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGTTCCCCTCAGGGACATaGGAACCAGCTGAGTTATTC | + |
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Preference number: 4 (lower is better) Translates to: EIESDSSNKNDPSRLIVLFPSGT*EPAELF Trigger: GAATAACTCAGCTGGTTCTCATGTCCCTGAGGGGAA...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR GCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCAGCAACAGAATTCAGTaGCTGAGATTCACACACCAG | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFSNRIQ*LRFTHQ Trigger: CTGGTGTGTGAATCTCAGGCACTGAATTCTGTTGCT...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR GCA 90 bp | CTGGGGCCAGTGACACTATTGGAAAACAATAGAATGATAAGTAGGTGTATTGGAAGCAACAGAATTCAGTaGCTGAGATTCACACACCAG | + |
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Preference number: 4 (lower is better) Translates to: LGPVTLLENNRMISRCIGSNRIQ*LRFTHQ Trigger: CTGGTGTGTGAATCTCAGGCACTGAATTCTGTTGCT...TCCAATACACCTACTTATCATTCTATTGTTTTCCAATAGTGTCACTGGCCCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCAACCTGTCTGACAAATaGCCACATATGATAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFNLSDK*PHMIAP Trigger: AGGGGCTATCATATGTGGCCATTTGTCAGACAGGTT...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCCGTAAGATGGGTGTGTaGAACAAGTCTCTTGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFRKMGV*NKSLGE Trigger: TTCTCCAAGAGACTTGTTCCACACACCCATCTTACG...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCAGATCCAGGGCAAGTTaGCAGAGTATGTTGCTAACA | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFRSRAS*QSMLLT Trigger: TGTTAGCAACATACTCTGCCAACTTGCCCTGGATCT...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCCTGGCTCTGTCTCATTaGAGAAAGTGCCATTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFLALSH*RKCHSN Trigger: ATTTGAATGGCACTTTCTCCAATGAGACAGAGCCAG...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCTCATTTCCTACATCATaGATGGAGTCAGGAAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFSFPTS*MESGRG Trigger: ACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR GCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCATGATTGGGAATGGCTaGAGTAAAGTTCTCCATTGT | + |
|
Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFMIGNG*SKVLHC Trigger: ACAATGGAGAACTTTACTGCAGCCATTCCCAATCAT...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCGACTATTTACTGATATaGGTTCCACAGACATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFDYLLI*VPQTFL Trigger: CAGGAATGTCTGTGGAACCCATATCAGTAAATAGTC...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGCGTAAGATGGGTGTGTaGAACAAGTCTCTTGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: EIESDSSNKNDPSRLIVLRKMGV*NKSLGE Trigger: TTCTCCAAGAGACTTGTTCCACACACCCATCTTACG...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR GCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCAATAAGTATGCCCAATaGACTACTGAGAAACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFNKYAQ*TTEKLQ Trigger: TTGCAGTTTCTCAGTAGTGCATTGGGCATACTTATT...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGCTGGCTCTGTCTCATTaGAGAAAGTGCCATTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: EIESDSSNKNDPSRLIVLLALSH*RKCHSN Trigger: ATTTGAATGGCACTTTCTCCAATGAGACAGAGCCAG...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR CCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCGTGGAACAAGTCTCTTaGAGAAGATTTTCTTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFVEQVS*RRFSFC Trigger: GCAAAAAGAAAATCTTCTCCAAGAGACTTGTTCCAC...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | CTGGGGCCAGTGACACTATTGGAAAACAATAGAATGATAAGTAGGTGTATTGGAGTGGAACAAGTCTCTTaGAGAAGATTTTCTTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: LGPVTLLENNRMISRCIGVEQVS*RRFSFC Trigger: GCAAAAAGAAAATCTTCTCCAAGAGACTTGTTCCAC...TCCAATACACCTACTTATCATTCTATTGTTTTCCAATAGTGTCACTGGCCCCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR GCA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCGCACTACTGAGAAACTaGAACAGGATAATATTAGTA | + |
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Preference number: 4 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFALLRN*NRIILV Trigger: TACTAATATTATCCTGTTGCAGTTTCTCAGTAGTGC...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGGACTATTTACTGATATaGGTTCCACAGACATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: EIESDSSNKNDPSRLIVLDYLLI*VPQTFL Trigger: CAGGAATGTCTGTGGAACCCATATCAGTAAATAGTC...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR GCA 90 bp | AAACATATTACAATCCTGCATTTTAGCAAAGGAATGGACCACATAAGTACCACTATGATTGGGAATGGCTaGAGTAAAGTTCTCCATTGT | + |
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Preference number: 4 (lower is better) Translates to: KHITILHFSKGMDHISTTMIGNG*SKVLHC Trigger: ACAATGGAGAACTTTACTGCAGCCATTCCCAATCAT...AGTGGTACTTATGTGGTCCATTCCTTTGCTAAAATGCAGGATTGTAATATGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS-3UTR GCA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGAATAAGTATGCCCAATaGACTACTGAGAAACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: EIESDSSNKNDPSRLIVLNKYAQ*TTEKLQ Trigger: TTGCAGTTTCTCAGTAGTGCATTGGGCATACTTATT...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS CCA 90 bp | TGTCTCATTGGAGAAAGTGCCATTCAAATGAAGAAGATGCCACTGTaGTTGGGCAAAACGACGACATTTATCCAGTCTCAGGTTGGAATC | + |
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Preference number: 5 (lower is better) Translates to: CLIGESAIQMKKMPL*LGKTTTFIQSQVGI Trigger: GATTCCAACCTGAGACTGGATAAATGTCGTCGTTTTGCCCAACCACAGTGGCATCTTCTTCATTTGAATGGCACTTTCTCCAATGAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS TCA 90 bp | ACCATGCCTAGGAATTTAGGGCTTGTCCATTCTAACATGAGCAAGTaGCTATTTACTGATATGGGTTCCACAGACATTCCTGCCAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: TMPRNLGLVHSNMSK*LFTDMGSTDIPARN Trigger: ATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCATGTTAGAATGGACAAGCCCTAAATTCCTAGGCATGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS GCA 90 bp | GATGGGTGTGTGGAACAAGTCTCTTGGAGAAGATTTTCTTTTTGCTaGCTCAAGTTCATTCTTCATACTTGCTTCCACAACCTCCATGGT | + |
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Preference number: 5 (lower is better) Translates to: DGCVEQVSWRRFSFC*LKFILHTCFHNLHG Trigger: ACCATGGAGGTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAAAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS TCA 90 bp | AAACCTTGTGACTTTAATGATGGAATCCTCCTCCTTTGCTTGTCTTaGCTCTTTCCAATCATTTCCTACATCATGGATGGAGTCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: KPCDFNDGILLLCLS*LFPIISYIMDGVRK Trigger: CTTCCTGACTCCATCCATGATGTAGGAAATGATTGGAAAGAGTCAAGACAAGCAAAGGAGGAGGATTCCATCATTAAAGTCACAAGGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CAA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCCCTCCTTTGCTTGTCTaGACTCTTTCCAATCATTTC | + |
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Preference number: 5 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFPPLLV*TLSNHF Trigger: GAAATGATTGGAAAGAGTCAAGACAAGCAAAGGAGG...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CAA 90 bp | CATGTCCTGAACAAAATTTTCTTCTCTTGGATCAGATGGCAATTCCAGGAGTTCGAGAAGATTTTCTTTTaGCTGCCTCAAGTTCATTCT | + |
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Preference number: 5 (lower is better) Translates to: HVLNKIFFSWIRWQFQEFEKIFF*LPQVHS Trigger: AGAATGAACTTGAGGCAGCAAAAAGAAAATCTTCTC...GAACTCCTGGAATTGCCATCTGATCCAAGAGAAGAAAATTTTGTTCAGGACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS-3UTR CAA 90 bp | GAGATTGAAAGTGATAGTTCGAATAAGAATGACCCCTCAAGACTCATAGTTTTGGAGAAGATTTTCTTTTaGCTGCCTCAAGTTCATTCT | + |
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Preference number: 5 (lower is better) Translates to: EIESDSSNKNDPSRLIVLEKIFF*LPQVHS Trigger: AGAATGAACTTGAGGCAGCAAAAAGAAAATCTTCTC...CAAAACTATGAGTCTTGAGGGGTCATTCTTATTCGAACTATCACTTTCAATCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000120540.2 |
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| CDS TCA 72 bp | TCTGGCTCTGTCTCATTGGAGAAAGTGCCATTCAAATaGAGAAGATGCCACTGTGGTTGGGCAAAACGACGA | + |
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Preference number: 6 (lower is better) Translates to: SGSVSLEKVPFK*RRCHCGWAKRR Trigger: TCGTCGTTTTGCCCAACCACAGTGGCATCTTCTTCATTTGAATGGCACTTTCTCCAATGAGACAGAGCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS CAA 90 bp | CTCATTGGAGAAAGTGCCATTCAAATGAAGAAGATGCCACTGTGGTaGGGCAAAACGACGACATTTATCCAGTCTCAGGTTGGAATCCAG | + |
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Preference number: 6 (lower is better) Translates to: LIGESAIQMKKMPLW*GKTTTFIQSQVGIQ Trigger: CTGGATTCCAACCTGAGACTGGATAAATGTCGTCGTTTTGCCCAACCACAGTGGCATCTTCTTCATTTGAATGGCACTTTCTCCAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS TCA 72 bp | GGGCCAGGAATAATCCACTATTACCAAACATTGCAATaGCTCCCATACCTGTTGCCCTTAATGTGGTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: GPGIIHYYQTLQ*LPYLLPLMWLE Trigger: TTCCAACCACATTAAGGGCAACAGGTATGGGAGTCATTGCAATGTTTGGTAATAGTGGATTATTCCTGGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS TCA 72 bp | TTGGGAATGGCTGCAGTAAAGTTCTCCATTGTAATATaGGGTACCACAAGGCCTACGAGGAAGAGAACAAAA | + |
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Preference number: 6 (lower is better) Translates to: LGMAAVKFSIVI*GTTRPTRKRTK Trigger: TTTTGTTCTCTTCCTCGTAGGCCTTGTGGTACCTCATATTACAATGGAGAACTTTACTGCAGCCATTCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS CAA 90 bp | GTAAGATGGGTGTGTGGAACAAGTCTCTTGGAGAAGATTTTCTTTTaGCTGCCTCAAGTTCATTCTTCATACTTGCTTCCACAACCTCCA | + |
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Preference number: 6 (lower is better) Translates to: VRWVCGTSLLEKIFF*LPQVHSSYLLPQPP Trigger: TGGAGGTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAAAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS CAA 90 bp | GGACACATATCCGCTTTCGTAAGATGGGTGTGTGGAACAAGTCTCTaGGAGAAGATTTTCTTTTTGCTGCCTCAAGTTCATTCTTCATAC | + |
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Preference number: 6 (lower is better) Translates to: GHISAFVRWVCGTSL*EKIFFLLPQVHSSY Trigger: GTATGAAGAATGAACTTGAGGCAGCAAAAAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAAGCGGATATGTGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS TCA 72 bp | AGGAATTTAGGGCTTGTCCATTCTAACATGAGCAAGTaGCTATTTACTGATATGGGTTCCACAGACATTCCT | + |
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Preference number: 6 (lower is better) Translates to: RNLGLVHSNMSK*LFTDMGSTDIP Trigger: AGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCATGTTAGAATGGACAAGCCCTAAATTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS TCA 72 bp | AATGTGGCCATAATAATACGCAGGGTCTGCATTTCTTaGGGTACAAATACAGCAGTCAACATGAATATTCCC | + |
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Preference number: 6 (lower is better) Translates to: NVAIIIRRVCIS*GTNTAVNMNIP Trigger: GGGAATATTCATGTTGACTGCTGTATTTGTACCTCAAGAAATGCAGACCCTGCGTATTATTATGGCCACATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS TCA 72 bp | GACTTTAATGATGGAATCCTCCTCCTTTGCTTGTCTTaGCTCTTTCCAATCATTTCCTACATCATGGATGGA | + |
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Preference number: 6 (lower is better) Translates to: DFNDGILLLCLS*LFPIISYIMDG Trigger: TCCATCCATGATGTAGGAAATGATTGGAAAGAGTCAAGACAAGCAAAGGAGGAGGATTCCATCATTAAAGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096269.11 |
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| CDS GCA 72 bp | GTGGAACAAGTCTCTTGGAGAAGATTTTCTTTTTGCTaGCTCAAGTTCATTCTTCATACTTGCTTCCACAAC | + |
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Preference number: 6 (lower is better) Translates to: VEQVSWRRFSFC*LKFILHTCFHN Trigger: GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAAAGAAAATCTTCTCCAAGAGACTTGTTCCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS GCA 72 bp | ACACTAATAAGTATGCCCAATGCACTACTGAGAAACTaGAACAGGATAATATTAGTACTCAGGTGTTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: TLISMPNALLRN*NRIILVLRCWR Trigger: CCTCCAACACCTGAGTACTAATATTATCCTGTTGCAGTTTCTCAGTAGTGCATTGGGCATACTTATTAGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS CAA 72 bp | ATTTTCTTTTTGCTGCCTCAAGTTCATTCTTCATACTaGCTTCCACAACCTCCATGGTTAGGGTATTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: IFFLLPQVHSSY*LPQPPWLGYFQ Trigger: CTGGAAATACCCTAACCATGGAGGTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAAAGAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000064507.12 ENSMUST00000096269.11 ENSMUST00000120540.2 |
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| CDS CAA 72 bp | AATCCTCCTCCTTTGCTTGTCTTGACTCTTTCCAACTaGAGGTACAAATACAGCAGTCAACATGAATATTCC | + |
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Preference number: 6 (lower is better) Translates to: NPPPLLVLTLSN*RYKYSSQHEYS Trigger: GGAATATTCATGTTGACTGCTGTATTTGTACCTCAAGTTGGAAAGAGTCAAGACAAGCAAAGGAGGAGGATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064507.12 |
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