Pregenerated sensors for SLC22A29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075044Ensembl transcript IDs: ENSMUST00000113298.9
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATCATGGCTAGGAATTTAGGGCTTGTCCATTCTAACATGAGCAAGTaGCTATTTACTGATATGGGTTCCACAGACATTCCTGCCAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: IMARNLGLVHSNMSK*LFTDMGSTDIPARN Trigger: ATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCATGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS TCA 90 bp | AGTATAAGGAAGAAGAATATTGGCGCAGACATTGTCAGCTGGAGGTaGTGCCAGATTCTAAATAGAAAAGCCAGTCCTGCCAATATCATG | + |
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Preference number: 5 (lower is better) Translates to: SIRKKNIGADIVSWR*CQILNRKASPANIM Trigger: CATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS TCA 90 bp | AATAGGCCAATCATGAATGAAAATTTAGTGACAGAATTCAGTGCCTaGGATTCACATACCAAGTCCCACTCAGTCACAATGGTAGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: NRPIMNENLVTEFSA*DSHTKSHSVTMVER Trigger: CCTTTCTACCATTGTGACTGAGTGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS TCA 90 bp | AATATTAGAACTCAGGTGCTGGAGGTGAACTGCCAGGCCAATAATTaGTACTGTAAAGAAAAGTCTTATAAAGGACAGGACACATATCCG | + |
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Preference number: 5 (lower is better) Translates to: NIRTQVLEVNCQANN*YCKEKSYKGQDTYP Trigger: CGGATATGTGTCCTGTCCTTTATAAGACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS GCA 72 bp | AGATCCTCAGGAGGTCATCTTGGCTCAGTATCCTACTaGCATTATCAGAGGCAGTGTCATTGTCAAGGATGG | + |
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Preference number: 6 (lower is better) Translates to: RSSGGHLGSVSY*HYQRQCHCQGW Trigger: CCATCCTTGACAATGACACTGCCTCTGATAATGGCAGTAGGATACTGAGCCAAGATGACCTCCTGAGGATCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS CAA 90 bp | CACATTGGAGAAAGTGCCATTCAAATGAAGAAGATGCCACTGTGGTaGGGCAAAACGACGACATTTATCCAGTCTCAGGTTGGAATCCAG | + |
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Preference number: 6 (lower is better) Translates to: HIGESAIQMKKMPLW*GKTTTFIQSQVGIQ Trigger: CTGGATTCCAACCTGAGACTGGATAAATGTCGTCGTTTTGCCCAACCACAGTGGCATCTTCTTCATTTGAATGGCACTTTCTCCAATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS TCA 72 bp | AAGAAGAATATTGGCGCAGACATTGTCAGCTGGAGGTaGTGCCAGATTCTAAATAGAAAAGCCAGTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: KKNIGADIVSWR*CQILNRKASPA Trigger: GGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS CAA 72 bp | GAAAGTGCCATTCAAATGAAGAAGATGCCACTGTGGTaGGGCAAAACGACGACATTTATCCAGTCTCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: ESAIQMKKMPLW*GKTTTFIQSQV Trigger: AACCTGAGACTGGATAAATGTCGTCGTTTTGCCCAACCACAGTGGCATCTTCTTCATTTGAATGGCACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS CCA 72 bp | GGGAATGGCTGCAGTAAAGTTCTCCATTCCAATATGTaGTACTACAATGGCATTGAGGAGGAAAAGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: GNGCSKVLHSNM*YYNGIEEEKKN Trigger: GTTTTTCTTTTCCTCCTCAATGCCATTGTAGTACCACATATTGGAATGGAGAACTTTACTGCAGCCATTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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| CDS TCA 72 bp | TGCAACAGGATAATATTAGAACTCAGGTGCTGGAGGTaGACTGCCAGGCCAATAATTGATACTGTAAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: CNRIILELRCWR*TARPIIDTVKK Trigger: TTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113298.9 |
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