Pregenerated sensors for SLC22A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040966Ensembl transcript IDs: ENSMUST00000046959.9, ENSMUST00000233066.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGTGGAGTGAGGTCCTGGTTGAGAGGAAGAGCTGGACACATCAGTaGAACAAACTGGGCGGGCGACAGCTCACTGCTGATGGAGTTCAG | + |
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Preference number: 1 (lower is better) Translates to: RWSEVLVERKSWTHQ*NKLGGRQLTADGVQ Trigger: CTGAACTCCATCAGCAGTGAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCTCAACCAGGACCTCACTCCACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR CCA 90 bp | AGGTCCTGGTTGAGAGGAAGAGCTGGACACATCAGTGCAACAAACTaGGCGGGCGACAGCTCACTGCTGATGGAGTTCAGGAATTCAGGG | + |
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Preference number: 1 (lower is better) Translates to: RSWLRGRAGHISATN*AGDSSLLMEFRNSG Trigger: CCCTGAATTCCTGAACTCCATCAGCAGTGAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCTCAACCAGGACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR TCA 90 bp | ATCCAGCAAAGCAATGGGCATTCCCCAGGACTGTTGAGAGTGGAGTaGGGTGGAGTGAGGTCCTGGTTGAGAGGAAGAGCTGGACACATC | + |
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Preference number: 1 (lower is better) Translates to: IQQSNGHSPGLLRVE*GGVRSWLRGRAGHI Trigger: GATGTGTCCAGCTCTTCCTCTCAACCAGGACCTCACTCCACCTCACTCCACTCTCAACAGTCCTGGGGAATGCCCATTGCTTTGCTGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR CCA 90 bp | AGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAACTCCAAATCTTaGAGAACTGGTTTGGCCTCAAGGCAGGTGGCAGGCAGTGTTACA | + |
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Preference number: 1 (lower is better) Translates to: SRKLPNSQVAVNSKS*RTGLASRQVAGSVT Trigger: TGTAACACTGCCTGCCACCTGCCTTGAGGCCAAACCAGTTCTCCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR CCA 90 bp | TTTTTAATAGTTAGTTGTCCTGACCCACAGCTCCCTTGTATATTTTaGTTTGATGTCATGCTTGGAGAAAGAAACCAAGTAAAGAAATGT | + |
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Preference number: 1 (lower is better) Translates to: FLIVSCPDPQLPCIF*FDVMLGERNQVKKC Trigger: ACATTTCTTTACTTGGTTTCTTTCTCCAAGCATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACTAACTATTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR-3UTR GCA 90 bp | AGAGGAAGAGCTGGACACATCAGTGCAACAAACTGGGCGGGCGACAGCTCACTGGGGGAAGAGAAGCTCTaGCTCTGGTCTCAGAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: RGRAGHISATNWAGDSSLGEEKL*LWSQRE Trigger: CTCTCTCTGAGACCAGAGGCAGAGCTTCTCTTCCCC...CAGTGAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR-3UTR TCA 90 bp | AGTGGAGTGAGGTGGAGTGAGGTCCTGGTTGAGAGGAAGAGCTGGACACATCAGGAATTCAGGGGTAAGTaGGGTTGGGTTGTGTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: SGVRWSEVLVERKSWTHQEFRGK*GWVVWL Trigger: AAGCCACACAACCCAACCTCACTTACCCCTGAATTC...CTGATGTGTCCAGCTCTTCCTCTCAACCAGGACCTCACTCCACCTCACTCCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR-3UTR GCA 90 bp | AGTTGTCCTGACCCACAGCTCCCTTGTATATTTTGGTTTGATGTCATGCTTGGAAGCTGGACACATCAGTaGAACAAACTGGGCGGGCGA | + |
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Preference number: 2 (lower is better) Translates to: SCPDPQLPCIFWFDVMLGSWTHQ*NKLGGR Trigger: TCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCT...TCCAAGCATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR-3UTR CCA 90 bp | TTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCACACCAAGTTTCTTGATGTGGCCTCAAGGCAGGTaGCAGGCAGTGTTACATCAA | + |
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Preference number: 2 (lower is better) Translates to: FCAYKEGNPSPVTPSFLMWPQGR*QAVLHQ Trigger: TTGATGTAACACTGCCTGCCACCTGCCTTGAGGCCA...CATCAAGAAACTTGGTGTGACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTCTTGGAGAACTGGTTTaGCCTCAAGGCAGGTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: KLSAQPFSRKLPNSQVAVLGELV*PQGRWQ Trigger: CTGCCACCTGCCTTGAGGCCAAACCAGTTCTCCAAG...AACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTGTCCTGACCCACAGCTCCCTTGTATATTTTGGTTTGATGTCATGCTTGGAGAGAAGCTCTGCCTCTaGTCTCAGAGAGAGCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SCPDPQLPCIFWFDVMLGEKLCL*SQREQS Trigger: ACTTTGCTCTCTCTGAGACCAGAGGCAGAGCTTCTC...TCCAAGCATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR CAA 90 bp | AGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTaGCAGTTAACTCCAAATCTTGGAGAACTGGTTTGGCCTCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: SCQHSLLAESCQIHR*QLTPNLGELVWPQG Trigger: GCCTTGAGGCCAAACCAGTTCTCCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR-3UTR CCA 90 bp | ACCAAGTTTCTTGATGTTGAGATGCTAAGTTGTCAGCACAGCCTTTTAGCAGAACAAATCTTGGAGAACTaGTTTGGCCTCAAGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: TKFLDVEMLSCQHSLLAEQILEN*FGLKAG Trigger: ACCTGCCTTGAGGCCAAACCAGTTCTCCAAGATTTG...TTCTGCTAAAAGGCTGTGCTGACAACTTAGCATCTCAACATCAAGAAACTTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR-3UTR GCA 90 bp | AAATTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCACACCAAGTTTCTTGCTTTTAGCAGAAAGTTaGCAAATTCACAGGTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: KFCAYKEGNPSPVTPSFLLLAES*QIHRLQ Trigger: CTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAG...CAAGAAACTTGGTGTGACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR TCA 72 bp | CTCACTGCTGATGGAGTTCAGGAATTCAGGGGTAAGTaGGGTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LTADGVQEFRGK*GWVVWLSREGK Trigger: CTTCCCCTCCCGCGAAAGCCACACAACCCAACCTCACTTACCCCTGAATTCCTGAACTCCATCAGCAGTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR TCA 72 bp | AGCAATGGGCATTCCCCAGGACTGTTGAGAGTGGAGTaGGGTGGAGTGAGGTCCTGGTTGAGAGGAAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: SNGHSPGLLRVE*GGVRSWLRGRA Trigger: AGCTCTTCCTCTCAACCAGGACCTCACTCCACCTCACTCCACTCTCAACAGTCCTGGGGAATGCCCATTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR CCA 72 bp | TTGAGAGGAAGAGCTGGACACATCAGTGCAACAAACTaGGCGGGCGACAGCTCACTGCTGATGGAGTTCAGG | + |
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Preference number: 3 (lower is better) Translates to: LRGRAGHISATN*AGDSSLLMEFR Trigger: CCTGAACTCCATCAGCAGTGAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| 3UTR-3UTR CAA 90 bp | CTCCAATATTTAATAAAATTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCTGCCAAATTCACAGGTaGCAGTTAACTCCAAATCTT | + |
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Preference number: 3 (lower is better) Translates to: LQYLIKFCAYKEGNPSPVCQIHR*QLTPNL Trigger: AAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCA...GACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAATTTTATTAAATATTGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AGTGAGGTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGCCAGGACTCCGGCAGTaGTGGTTGGGGGTGAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: SEVGLCGFRGRGREALPLPGLRQ*WLGVKP Trigger: GGGCTTCACCCCCAACCACCACTGCCGGAGTCCTGG...CAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAACCTCACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR GCA 90 bp | GTGAGGTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGGTAGTTCAGCTCCTCTaGTGGGCTCCAGCCACATCG | + |
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Preference number: 4 (lower is better) Translates to: VRLGCVAFAGGEEKLCLWVVQLL*WAPATS Trigger: CGATGTGGCTGGAGCCCAGCAGAGGAGCTGAACTAC...CCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAACCTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | GGCGACAGCTCACTGCTGATGGAGTTCAGGAATTCAGGGGTAAGTGAGGTTGGGGGACTCCGGCAGTGGTaGTTGGGGGTGAAGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GDSSLLMEFRNSGVSEVGGLRQW*LGVKPR Trigger: CCTGGGCTTCACCCCCAACCACCACTGCCGGAGTCC...CCCAACCTCACTTACCCCTGAATTCCTGAACTCCATCAGCAGTGAGCTGTCGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | TGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGTCTCAGAGAGAGCAGCAAGTGGCTCCTGTTaGCAGCCAGGCTGGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: CGFRGRGREALPLVSERAASGSC*QPGWTV Trigger: CACTGTCCAGCCTGGCTGCCAACAGGAGCCACTTGC...TGCTCTCTCTGAGACCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | GTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGTCTCATCTGCCGTCAGGCTCTaGAGAGAGACTGGCACCGAT | + |
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Preference number: 4 (lower is better) Translates to: VGLCGFRGRGREALPLVSSAVRL*RETGTD Trigger: ATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGA...TGAGACCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | GTGAGGTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGCCAGCCAGATGTCAGTaGGACGGTAGACCAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: VRLGCVAFAGGEEKLCLWPARCQ*DGRPGK Trigger: CTTTCCTGGTCTACCGTCTCACTGACATCTGGCTGG...CCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAACCTCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | AGAGGAAGAGCTGGACACATCAGTGCAACAAACTGGGCGGGCGACAGCTCACTGGTTCAGCTCCTCTGCTaGGCTCCAGCCACATCGCTG | + |
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Preference number: 4 (lower is better) Translates to: RGRAGHISATNWAGDSSLVQLLC*APATSL Trigger: CAGCGATGTGGCTGGAGCCCAGCAGAGGAGCTGAAC...CAGTGAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | AGTGGAGTGAGGTGGAGTGAGGTCCTGGTTGAGAGGAAGAGCTGGACACATCAGGGGCTCAGTGGCAAGTaGCTCCTGTTGGCAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SGVRWSEVLVERKSWTHQGLSGK*LLLAAR Trigger: CCTGGCTGCCAACAGGAGCCACTTGCCACTGAGCCC...CTGATGTGTCCAGCTCTTCCTCTCAACCAGGACCTCACTCCACCTCACTCCACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | GCAACAAACTGGGCGGGCGACAGCTCACTGCTGATGGAGTTCAGGAATTCAGGGAGTGGTGGTTGGGGGTaGAGCCCAGGAAAACGATGC | + |
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Preference number: 4 (lower is better) Translates to: ATNWAGDSSLLMEFRNSGSGGWG*SPGKRC Trigger: GCATCGTTTTCCTGGGCTTCACCCCCAACCACCACT...CCCTGAATTCCTGAACTCCATCAGCAGTGAGCTGTCGCCCGCCCAGTTTGTTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | AGTGAGGTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGACCAGCCCGCTTTGCTaGCCAGTCCCTGTAGAAATC | + |
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Preference number: 4 (lower is better) Translates to: SEVGLCGFRGRGREALPLTSPLC*PVPVEI Trigger: GATTTCTACAGGGACTGGTCAGCAAAGCGGGCTGGT...CAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAACCTCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | GTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGTCTCAGATGATGAAGGCAGCTaGGAATTCCACCAGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: VGLCGFRGRGREALPLVSDDEGS*EFHQGR Trigger: TCTGCCCTGGTGGAATTCCCAGCTGCCTTCATCATC...TGAGACCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | TGGCAGGCAGTGTTACATCAAAGGAAACTAGTTGAGTCGGAGAAGCAGCACCGCGTTCAGCTCCTCTGCTaGGCTCCAGCCACATCGCTG | + |
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Preference number: 4 (lower is better) Translates to: WQAVLHQRKLVESEKQHRVQLLC*APATSL Trigger: CAGCGATGTGGCTGGAGCCCAGCAGAGGAGCTGAAC...GCGGTGCTGCTTCTCCGACTCAACTAGTTTCCTTTGATGTAACACTGCCTGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | GACAGCTCACTGCTGATGGAGTTCAGGAATTCAGGGGTAAGTGAGGTTGGGTTGTGTTGGCAGCCAGGCTaGACAGTGGGTCCACACAGT | + |
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Preference number: 4 (lower is better) Translates to: DSSLLMEFRNSGVSEVGLCWQPG*TVGPHS Trigger: ACTGTGTGGACCCACTGTCCAGCCTGGCTGCCAACA...CAACCCAACCTCACTTACCCCTGAATTCCTGAACTCCATCAGCAGTGAGCTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | GTTGAGAGGAAGAGCTGGACACATCAGTGCAACAAACTGGGCGGGCGACAGCTCGTATGTTTCCTTATCTaGGGGGTTCTGACCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: VERKSWTHQCNKLGGRQLVCFLI*GVLTKS Trigger: GGACTTGGTCAGAACCCCTCAGATAAGGAAACATAC...GAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCTCAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | GCTAAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGGACTCCGGCAGTGGTaGTTGGGGGTGAAGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: AKLSAQPFSRKLPNSQVAGLRQW*LGVKPR Trigger: CCTGGGCTTCACCCCCAACCACCACTGCCGGAGTCC...TGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTTAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR GCA 90 bp | TGGAGTGAGGTCCTGGTTGAGAGGAAGAGCTGGACACATCAGTGCAACAAACTGGTAGATGTTGTCCCCTaGGAGGCCCATGTGCATGAT | + |
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Preference number: 4 (lower is better) Translates to: WSEVLVERKSWTHQCNKLVDVVP*EAHVHD Trigger: ATCATGCACATGGGCCTCGCAGGGGACAACATCTAC...CAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCTCAACCAGGACCTCACTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | TTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCACACCAAGTTTCTTGATGAGTGGTGGTTGGGGGTaGAGCCCAGGAAAACGATGC | + |
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Preference number: 4 (lower is better) Translates to: FCAYKEGNPSPVTPSFLMSGGWG*SPGKRC Trigger: GCATCGTTTTCCTGGGCTTCACCCCCAACCACCACT...CATCAAGAAACTTGGTGTGACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR GCA 90 bp | TTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCACACCAAGTTTCTTGATGGTAGTTCAGCTCCTCTaGTGGGCTCCAGCCACATCG | + |
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Preference number: 4 (lower is better) Translates to: FCAYKEGNPSPVTPSFLMVVQLL*WAPATS Trigger: CGATGTGGCTGGAGCCCAGCAGAGGAGCTGAACTAC...CATCAAGAAACTTGGTGTGACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | TTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCACACCAAGTTTCTTGATGTGTTGGCAGCCAGGCTaGACAGTGGGTCCACACAGT | + |
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Preference number: 4 (lower is better) Translates to: FCAYKEGNPSPVTPSFLMCWQPG*TVGPHS Trigger: ACTGTGTGGACCCACTGTCCAGCCTGGCTGCCAACA...CATCAAGAAACTTGGTGTGACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTGGGCTCAGTGGCAAGTaGCTCCTGTTGGCAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: KLSAQPFSRKLPNSQVAVGLSGK*LLLAAR Trigger: CCTGGCTGCCAACAGGAGCCACTTGCCACTGAGCCC...AACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AGTTGTCCTGACCCACAGCTCCCTTGTATATTTTGGTTTGATGTCATGCTTGGAGCAGCCACCTCCAGTTaGGAAGGGCATAGGCCACTC | + |
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Preference number: 4 (lower is better) Translates to: SCPDPQLPCIFWFDVMLGAATSS*EGHRPL Trigger: GAGTGGCCTATGCCCTTCCCAACTGGAGGTGGCTGC...TCCAAGCATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | GCTAAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCATCTGCCGTCAGGCTCTaGAGAGAGACTGGCACCGAT | + |
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Preference number: 4 (lower is better) Translates to: AKLSAQPFSRKLPNSQVASAVRL*RETGTD Trigger: ATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGA...TGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR GCA 90 bp | TTCTGCGCTTATAAAGAGGGAAACCCATCCCCTGTCACACCAAGTTTCTTGATGAGCCTGCCTAGGCTCTaGATCTTCTCAGCATCCTCG | + |
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Preference number: 4 (lower is better) Translates to: FCAYKEGNPSPVTPSFLMSLPRL*IFSASS Trigger: CGAGGATGCTGAGAAGATGCAGAGCCTAGGCAGGCT...CATCAAGAAACTTGGTGTGACAGGGGATGGGTTTCCCTCTTTATAAGCGCAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAGCAGCCACCTCCAGTTaGGAAGGGCATAGGCCACTC | + |
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Preference number: 4 (lower is better) Translates to: SCQHSLLAESCQIHRLQLAATSS*EGHRPL Trigger: GAGTGGCCTATGCCCTTCCCAACTGGAGGTGGCTGC...TAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AGAGGAAGAGCTGGACACATCAGTGCAACAAACTGGGCGGGCGACAGCTCACTGTGTTTCTGGAAAAGGTaGAATTCCCCTATATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: RGRAGHISATNWAGDSSLCFWKR*NSPICS Trigger: AGAACATATAGGGGAATTCCACCTTTTCCAGAAACA...CAGTGAGCTGTCGCCCGCCCAGTTTGTTGCACTGATGTGTCCAGCTCTTCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | AGTTGTCCTGACCCACAGCTCCCTTGTATATTTTGGTTTGATGTCATGCTTGGAAGACCAGGAAAGGTGTaGCGATGCCACCAATGTCAC | + |
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Preference number: 4 (lower is better) Translates to: SCPDPQLPCIFWFDVMLGRPGKV*RCHQCH Trigger: GTGACATTGGTGGCATCGTCACACCTTTCCTGGTCT...TCCAAGCATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | AAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTCCAGCCAGATGTCAGTaGGACGGTAGACCAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: KLSAQPFSRKLPNSQVAVPARCQ*DGRPGK Trigger: CTTTCCTGGTCTACCGTCTCACTGACATCTGGCTGG...AACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | CTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAACTCCAAATCTTGGAGCAAGTGGCTCCTGTTaGCAGCCAGGCTGGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: LLAESCQIHRLQLTPNLGASGSC*QPGWTV Trigger: CACTGTCCAGCCTGGCTGCCAACAGGAGCCACTTGC...TCCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AGTGGAGTGAGGTGGAGTGAGGTCCTGGTTGAGAGGAAGAGCTGGACACATCAGTTTGCATTTTTGTTCTaGGAGATCAACCATCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: SGVRWSEVLVERKSWTHQFAFLF*EINHLG Trigger: TCCAAGATGGTTGATCTCCCAGAACAAAAATGCAAA...CTGATGTGTCCAGCTCTTCCTCTCAACCAGGACCTCACTCCACCTCACTCCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | AGTTGTCCTGACCCACAGCTCCCTTGTATATTTTGGTTTGATGTCATGCTTGGATCCAGCATCCAGGAGTaGGCACACACTAGGTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: SCPDPQLPCIFWFDVMLGSSIQE*AHTRLN Trigger: GTTTAACCTAGTGTGTGCTCACTCCTGGATGCTGGA...TCCAAGCATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR TCA 90 bp | AGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTATCCAGCATCCAGGAGTaGGCACACACTAGGTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: SCQHSLLAESCQIHRLQLSSIQE*AHTRLN Trigger: GTTTAACCTAGTGTGTGCTCACTCCTGGATGCTGGA...TAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR TCA 90 bp | TTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAACTCCAAATCTTGGAGAAAGACCAGGAAAGGTGTaGCGATGCCACCAATGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LAESCQIHRLQLTPNLGERPGKV*RCHQCH Trigger: GTGACATTGGTGGCATCGTCACACCTTTCCTGGTCT...TTCTCCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | AAGTTTCTTGATGTTGAGATGCTAAGTTGTCAGCACAGCCTTTTAGCAGAAAGTGATGATGAAGGCAGCTaGGAATTCCACCAGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: KFLDVEMLSCQHSLLAESDDEGS*EFHQGR Trigger: TCTGCCCTGGTGGAATTCCCAGCTGCCTTCATCATC...ACTTTCTGCTAAAAGGCTGTGCTGACAACTTAGCATCTCAACATCAAGAAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR TCA 90 bp | CCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAACTCCAAATCTTGGGTATGTTTCCTTATCTaGGGGGTTCTGACCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PFSRKLPNSQVAVNSKSWVCFLI*GVLTKS Trigger: GGACTTGGTCAGAACCCCTCAGATAAGGAAACATAC...CCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR GCA 90 bp | TGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAACTAAGGGTTCAATTTCATaGCAGTATCCTCATCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: CQHSLLAESCQIHRLQLTKGSIS*QYPHLP Trigger: CGGCAGATGAGGATACTGGCATGAAATTGAACCCTT...AGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| 3UTR CAA 72 bp | CACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTaGCAGTTAACTCCAAATCTTGGAGAACTGGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HSLLAESCQIHR*QLTPNLGELVW Trigger: CCAAACCAGTTCTCCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR GCA 90 bp | ATAGTTAGTTGTCCTGACCCACAGCTCCCTTGTATATTTTGGTTTGATGTCATGAAGGGTTCAATTTCATaGCAGTATCCTCATCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: IVSCPDPQLPCIFWFDVMKGSIS*QYPHLP Trigger: CGGCAGATGAGGATACTGGCATGAAATTGAACCCTT...CATGACATCAAACCAAAATATACAAGGGAGCTGTGGGTCAGGACAACTAACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CCA 90 bp | ACCAAGTTTCTTGATGTTGAGATGCTAAGTTGTCAGCACAGCCTTTTAGCAGAATGTTTCTGGAAAAGGTaGAATTCCCCTATATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TKFLDVEMLSCQHSLLAECFWKR*NSPICS Trigger: AGAACATATAGGGGAATTCCACCTTTTCCAGAAACA...TTCTGCTAAAAGGCTGTGCTGACAACTTAGCATCTCAACATCAAGAAACTTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CCA 90 bp | CTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTAACTCCAAATCTTGGATTTGCATTTTTGTTCTaGGAGATCAACCATCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: LLAESCQIHRLQLTPNLGFAFLF*EINHLG Trigger: TCCAAGATGGTTGATCTCCCAGAACAAAAATGCAAA...TCCAAGATTTGGAGTTAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CAA 90 bp | GTGAGGTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGCAGAGTCACGGCAAATaGCAGCCACCTCCAGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: VRLGCVAFAGGEEKLCLWQSHGK*QPPPVG Trigger: CCCAACTGGAGGTGGCTGCAATTTGCCGTGACTCTG...CCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAACCTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS CCA 90 bp | AGCAGAAGTTGGGCAGAGTCACGGCAAATTGCAGCCACCTCCAGTTaGGAAGGGCATAGGCCACTCCAGCCAGGATCAGGAGCCCAACAG | + |
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Preference number: 5 (lower is better) Translates to: SRSWAESRQIAATSS*EGHRPLQPGSGAQQ Trigger: CTGTTGGGCTCCTGATCCTGGCTGGAGTGGCCTATGCCCTTCCCAACTGGAGGTGGCTGCAATTTGCCGTGACTCTGCCCAACTTCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS-3UTR CAA 90 bp | GTTGGGTTGTGTGGCTTTCGCGGGAGGGGAAGAGAAGCTCTGCCTCTGGTCTCAAGCAGGAAGCAGAAGTaGGGCAGAGTCACGGCAAAT | + |
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Preference number: 5 (lower is better) Translates to: VGLCGFRGRGREALPLVSSRKQK*GRVTAN Trigger: ATTTGCCGTGACTCTGCCCAACTTCTGCTTCCTGCT...TGAGACCAGAGGCAGAGCTTCTCTTCCCCTCCCGCGAAAGCCACACAACCCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CAA 90 bp | GCAACAAACTGGGCGGGCGACAGCTCACTGCTGATGGAGTTCAGGAATTCAGGGCTCCTGCCACCATATTaGACACAGCCCAGGGATAGC | + |
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Preference number: 5 (lower is better) Translates to: ATNWAGDSSLLMEFRNSGLLPPY*TQPRDS Trigger: GCTATCCCTGGGCTGTGTCAAATATGGTGGCAGGAG...CCCTGAATTCCTGAACTCCATCAGCAGTGAGCTGTCGCCCGCCCAGTTTGTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS-3UTR CAA 90 bp | GCAACAAACTGGGCGGGCGACAGCTCACTGCTGATGGAGTTCAGGAATTCAGGGATTAACCAGCCCGCTTaGCTGACCAGTCCCTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: ATNWAGDSSLLMEFRNSGINQPA*LTSPCR Trigger: TCTACAGGGACTGGTCAGCAAAGCGGGCTGGTTAAT...CCCTGAATTCCTGAACTCCATCAGCAGTGAGCTGTCGCCCGCCCAGTTTGTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046959.9 |
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| CDS CCA 90 bp | GCATCTTCTCAGCATCCTCGATGGTCTCAGGCAGAGCCTTCCCTTTaGTCTCAGGTAGCAATAGCACAAGTCCCCCAGCAACAAGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: ASSQHPRWSQAEPSL*SQVAIAQVPQQQGQ Trigger: TTGGCCTTGTTGCTGGGGGACTTGTGCTATTGCTACCTGAGACCAAAGGGAAGGCTCTGCCTGAGACCATCGAGGATGCTGAGAAGATGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS TCA 90 bp | TCCGCCCAAACCTGTCTGCTAGGTAACCAATGCCCACAGCACCGATaGAAAACCCCACGTTCACTAATGACTGAAACAGGTCCAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: SAQTCLLGNQCPQHR*KTPRSLMTETGPAS Trigger: GGATGCTGGACCTGTTTCAGTCATTAGTGAACGTGGGGTTTTTCATCGGTGCTGTGGGCATTGGTTACCTAGCAGACAGGTTTGGGCGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CCA 90 bp | GCGGCGACCAATCCGGTCTATGGTGAGAATGATGATGAAGGCAGCTaGGAATTCCACCAGGGCAGAGTAGAAGAAATCCAAGTAGATGTT | + |
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Preference number: 5 (lower is better) Translates to: AATNPVYGENDDEGS*EFHQGRVEEIQVDV Trigger: AACATCTACTTGGATTTCTTCTACTCTGCCCTGGTGGAATTCCCAGCTGCCTTCATCATCATTCTCACCATAGACCGGATTGGTCGCCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS-3UTR CAA 90 bp | AGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAGTTACAGAGTCACGGCAAATaGCAGCCACCTCCAGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SCQHSLLAESCQIHRLQLQSHGK*QPPPVG Trigger: CCCAACTGGAGGTGGCTGCAATTTGCCGTGACTCTG...TAACTGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS-3UTR CAA 90 bp | GCTAAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCACTCCTGCCACCATATTaGACACAGCCCAGGGATAGC | + |
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Preference number: 5 (lower is better) Translates to: AKLSAQPFSRKLPNSQVALLPPY*TQPRDS Trigger: GCTATCCCTGGGCTGTGTCAAATATGGTGGCAGGAG...TGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS GCA 90 bp | CAAGTCCAGGAACGAAGGGTTCAATTTCATGCCAGTATCCTCATCTaGCGTCAGGCTCTGAAGAGAGACTGGCACCGATTTTCCATTTTT | + |
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Preference number: 5 (lower is better) Translates to: QVQERRVQFHASILI*RQALKRDWHRFSIF Trigger: AAAAATGGAAAATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGATGAGGATACTGGCATGAAATTGAACCCTTCGTTCCTGGACTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS-3UTR CAA 90 bp | GCTAAGTTGTCAGCACAGCCTTTTAGCAGAAAGTTGCCAAATTCACAGGTTGCAATTAACCAGCCCGCTTaGCTGACCAGTCCCTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: AKLSAQPFSRKLPNSQVAINQPA*LTSPCR Trigger: TCTACAGGGACTGGTCAGCAAAGCGGGCTGGTTAAT...TGCAACCTGTGAATTTGGCAACTTTCTGCTAAAAGGCTGTGCTGACAACTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233066.2 |
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| CDS TCA 90 bp | GAAGGGTTCAATTTCATGCCAGTATCCTCATCTGCCGTCAGGCTCTaGAGAGAGACTGGCACCGATTTTCCATTTTTCTTAGCAATATGC | + |
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Preference number: 5 (lower is better) Translates to: EGFNFMPVSSSAVRL*RETGTDFPFFLAIC Trigger: GCATATTGCTAAGAAAAATGGAAAATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGATGAGGATACTGGCATGAAATTGAACCCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS TCA 90 bp | CTCGTGAACCAATTGTACATCAAGATCAACGTATGTTTCCTTATCTaGGGGGTTCTGACCAAGTCCAGGAACGAAGGGTTCAATTTCATG | + |
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Preference number: 5 (lower is better) Translates to: LVNQLYIKINVCFLI*GVLTKSRNEGFNFM Trigger: CATGAAATTGAACCCTTCGTTCCTGGACTTGGTCAGAACCCCTCAGATAAGGAAACATACGTTGATCTTGATGTACAATTGGTTCACGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS TCA 90 bp | AATTGTACATCAAGATCAACGTATGTTTCCTTATCTGAGGGGTTCTaGCCAAGTCCAGGAACGAAGGGTTCAATTTCATGCCAGTATCCT | + |
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Preference number: 5 (lower is better) Translates to: NCTSRSTYVSLSEGF*PSPGTKGSISCQYP Trigger: AGGATACTGGCATGAAATTGAACCCTTCGTTCCTGGACTTGGTCAGAACCCCTCAGATAAGGAAACATACGTTGATCTTGATGTACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CAA 72 bp | GAGCAGGAAGCAGAAGTTGGGCAGAGTCACGGCAAATaGCAGCCACCTCCAGTTGGGAAGGGCATAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: EQEAEVGQSHGK*QPPPVGKGIGH Trigger: GTGGCCTATGCCCTTCCCAACTGGAGGTGGCTGCAATTTGCCGTGACTCTGCCCAACTTCTGCTTCCTGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CAA 72 bp | TCAGCATCCTCGATGGTCTCAGGCAGAGCCTTCCCTTaGGTCTCAGGTAGCAATAGCACAAGTCCCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SASSMVSGRAFP*VSGSNSTSPPA Trigger: TGCTGGGGGACTTGTGCTATTGCTACCTGAGACCAAAGGGAAGGCTCTGCCTGAGACCATCGAGGATGCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CAA 90 bp | TGCATCTTCTCAGCATCCTCGATGGTCTCAGGCAGAGCCTTCCCTTaGGTCTCAGGTAGCAATAGCACAAGTCCCCCAGCAACAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: CIFSASSMVSGRAFP*VSGSNSTSPPATRP Trigger: TGGCCTTGTTGCTGGGGGACTTGTGCTATTGCTACCTGAGACCAAAGGGAAGGCTCTGCCTGAGACCATCGAGGATGCTGAGAAGATGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CAA 90 bp | ATAGGCCACTCCAGCCAGGATCAGGAGCCCAACAGTAAAGGCGATTaGGTAACAAATCCCTACTGTTCTGCGATAGCCCAGCCCAACAAA | + |
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Preference number: 6 (lower is better) Translates to: IGHSSQDQEPNSKGD*VTNPYCSAIAQPNK Trigger: TTTGTTGGGCTGGGCTATCGCAGAACAGTAGGGATTTGTTACCAAATCGCCTTTACTGTTGGGCTCCTGATCCTGGCTGGAGTGGCCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CAA 72 bp | TTGGGTGAAATCGCCATGAGAACCCCAGAGATAGCATaGATGAGGATGGTGACCAAGAGGCAGAACTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: LGEIAMRTPEIA*MRMVTKRQNFR Trigger: GCGGAAGTTCTGCCTCTTGGTCACCATCCTCATCAATGCTATCTCTGGGGTTCTCATGGCGATTTCACCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CAA 72 bp | TCCAGCCAGGATCAGGAGCCCAACAGTAAAGGCGATTaGGTAACAAATCCCTACTGTTCTGCGATAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: SSQDQEPNSKGD*VTNPYCSAIAQ Trigger: CTGGGCTATCGCAGAACAGTAGGGATTTGTTACCAAATCGCCTTTACTGTTGGGCTCCTGATCCTGGCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS GCA 72 bp | GAACGAAGGGTTCAATTTCATGCCAGTATCCTCATCTaGCGTCAGGCTCTGAAGAGAGACTGGCACCGATTT | + |
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Preference number: 6 (lower is better) Translates to: ERRVQFHASILI*RQALKRDWHRF Trigger: AAATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGATGAGGATACTGGCATGAAATTGAACCCTTCGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS TCA 72 bp | ACCTGTCTGCTAGGTAACCAATGCCCACAGCACCGATaGAAAACCCCACGTTCACTAATGACTGAAACAGGT | + |
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Preference number: 6 (lower is better) Translates to: TCLLGNQCPQHR*KTPRSLMTETG Trigger: ACCTGTTTCAGTCATTAGTGAACGTGGGGTTTTTCATCGGTGCTGTGGGCATTGGTTACCTAGCAGACAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS CCA 72 bp | AATCCGGTCTATGGTGAGAATGATGATGAAGGCAGCTaGGAATTCCACCAGGGCAGAGTAGAAGAAATCCAA | + |
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Preference number: 6 (lower is better) Translates to: NPVYGENDDEGS*EFHQGRVEEIQ Trigger: TTGGATTTCTTCTACTCTGCCCTGGTGGAATTCCCAGCTGCCTTCATCATCATTCTCACCATAGACCGGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS TCA 72 bp | AATTTCATGCCAGTATCCTCATCTGCCGTCAGGCTCTaGAGAGAGACTGGCACCGATTTTCCATTTTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: NFMPVSSSAVRL*RETGTDFPFFL Trigger: TAAGAAAAATGGAAAATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGATGAGGATACTGGCATGAAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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| CDS TCA 72 bp | CAATTGTACATCAAGATCAACGTATGTTTCCTTATCTaGGGGGTTCTGACCAAGTCCAGGAACGAAGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: QLYIKINVCFLI*GVLTKSRNEGF Trigger: GAACCCTTCGTTCCTGGACTTGGTCAGAACCCCTCAGATAAGGAAACATACGTTGATCTTGATGTACAATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046959.9 ENSMUST00000233066.2 |
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