RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC22A15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033147

Ensembl transcript IDs: ENSMUST00000106928.10, ENSMUST00000183255.2, ENSMUST00000190824.7

Found 290 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGCTGGCACAGGGTGGACCAGCCCAGGGCACAGGAAGCAGGGCTaGGGCTGCAGCCCTCTCCTGAATCTGGGTTTGCTCTTGTCCTCA +
Preference number: 1 (lower is better)
Translates to: RAGTGWTSPGHRKQG*GCSPLLNLGLLLSS
Trigger: TGAGGACAAGAGCAAACCCAGATTCAGGAGAGGGCTGCAGCCTCAGCCCTGCTTCCTGTGCCCTGGGCTGGTCCACCCTGTGCCAGCCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CCA 90 bp AGAAGGGGTTCTTTCGAGTGCTCTTTAGGGAGACTGACAAAGGGCTaGCACAGGGTGGACCAGCCCAGGGCACAGGAAGCAGGGCTGAGG +
Preference number: 1 (lower is better)
Translates to: RRGSFECSLGRLTKG*HRVDQPRAQEAGLR
Trigger: CCTCAGCCCTGCTTCCTGTGCCCTGGGCTGGTCCACCCTGTGCCAGCCCTTTGTCAGTCTCCCTAAAGAGCACTCGAAAGAACCCCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR GCA 90 bp GAACAGAGAATGGCGCTGTTTCCAGATAGGCTAGGCCTCCACTTCTaGCTCAGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATG +
Preference number: 1 (lower is better)
Translates to: EQRMALFPDRLGLHF*LSPTVSMESLLVWM
Trigger: CATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCTGAGGCAGAAGTGGAGGCCTAGCCTATCTGGAAACAGCGCCATTCTCTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR GCA 90 bp AGGGTATGGGATCTCACTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATTGAACTCAGGACCACTGAGCCATCTCTCCAGCTCC +
Preference number: 1 (lower is better)
Translates to: RVWDLTTDGCEPPCG*WELNSGPLSHLSSS
Trigger: GGAGCTGGAGAGATGGCTCAGTGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAGTGAGATCCCATACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 90 bp GAACAAGTCAGCAATGACTCCCTCAACGCAGCAAGTTCTCCCTTTTaGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAAGCGTCAGTG +
Preference number: 1 (lower is better)
Translates to: EQVSNDSLNAASSPF*NLSSTASPIWKASV
Trigger: CACTGACGCTTTCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGTTGAGGGAGTCATTGCTGACTTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 90 bp CGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGATCAACAGGTaGAGAGCATCCATAGGCTGCTTGCTTGAGGAAACAGAAGGGGTT +
Preference number: 1 (lower is better)
Translates to: RQQSKLLLGRLQINR*RASIGCLLEETEGV
Trigger: AACCCCTTCTGTTTCCTCAAGCAAGCAGCCTATGGATGCTCTCCACCTGTTGATCTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR TCA 90 bp GCAGAGTCCAGCCCTGGTGTGCTGTGCATGTCCCTTGTTGCACACTaGCGACACTGTGAGAGACTCTCCCCTCTTAAGTCATTTACAAAG +
Preference number: 1 (lower is better)
Translates to: AESSPGVLCMSLVAH*RHCERLSPLKSFTK
Trigger: CTTTGTAAATGACTTAAGAGGGGAGAGTCTCTCACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR TCA 90 bp GGATGGGGTGGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAAGATaGGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGA +
Preference number: 1 (lower is better)
Translates to: GWGGSQVTEKVAETR*EDASRASCFWEDFR
Trigger: TCTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR GCA 90 bp CACAGAGGAGTCCAGGAACATAGCTGGAGGCAAAGAATGCAGGCTTaGACAGTTTCCAGGGGCATCTACAGAGCACCTTTCTACTCTGTG +
Preference number: 1 (lower is better)
Translates to: HRGVQEHSWRQRMQA*TVSRGIYRAPFYSV
Trigger: CACAGAGTAGAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR GCA 90 bp CCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAAAGAATaGAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCT +
Preference number: 1 (lower is better)
Translates to: PDNTEESRNIAGGKE*RLAQFPGASTEHLS
Trigger: AGAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 90 bp CTGACCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTaGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCG +
Preference number: 1 (lower is better)
Translates to: LTSISQRGEQQDFVL*SVGHPLLEFADMMS
Trigger: CGACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 90 bp TTAAAGGCAGCACTGATGGTCAGCTTCCCCAGCAGGGACAAGGAATaGCTGTTGACCACTGCAAACACGCCTGTGTCTTTCTTTTCCGGA +
Preference number: 1 (lower is better)
Translates to: LKAALMVSFPSRDKE*LLTTANTPVSFFSG
Trigger: TCCGGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCATCAGTGCTGCCTTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR GCA 90 bp GCACTAAACTGGACGGTGCCTATCCTGGCCACAGTCACCCGCCAGTaGCCCAGATACTATACTCTTCTTGTATTTTGTGTTCATGCTGAG +
Preference number: 1 (lower is better)
Translates to: ALNWTVPILATVTRQ*PRYYTLLVFCVHAE
Trigger: CTCAGCATGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTGGCCAGGATAGGCACCGTCCAGTTTAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 90 bp TCTCTGTCCACGAAAGCACAGTTAACAAAGCCCAGATGGCATGAATaGGGCACAGAGATAAGAGACCCTTACCTGATGACAGTGGGGTAC +
Preference number: 1 (lower is better)
Translates to: SLSTKAQLTKPRWHE*GTEIRDPYLMTVGY
Trigger: GTACCCCACTGTCATCAGGTAAGGGTCTCTTATCTCTGTGCCCCATTCATGCCATCTGGGCTTTGTTAACTGTGCTTTCGTGGACAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CCA 90 bp TGGTCGGGGCGTGATCGATTGATCGATTGCCCACATGTGGACTCCTaGCTTATATGCCATTTGAGAGTGTTCAAGTTTTGTGAGAGACAG +
Preference number: 1 (lower is better)
Translates to: WSGRDRLIDCPHVDS*LICHLRVFKFCERQ
Trigger: CTGTCTCTCACAAAACTTGAACACTCTCAAATGGCATATAAGCCAGGAGTCCACATGTGGGCAATCGATCAATCGATCACGCCCCGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 90 bp ATGTTAGTACACTGTAGCTGTCTTCAGACACATCAGAAGAGGGTATaGGATCTCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG +
Preference number: 1 (lower is better)
Translates to: MLVHCSCLQTHQKRV*DLTTDGCEPPCGCW
Trigger: CCAGCAACCACATGGTGGCTCACAACCATCTGTAGTGAGATCCCATACCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTACTAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 90 bp CCAGTGCCCCAGATACTATACTCTTCTTGTATTTTGTGTTCATGCTaGGAATTGAAGAACATCTCCCTTGCTCTGGAGCCGCTGAAGACC +
Preference number: 1 (lower is better)
Translates to: PVPQILYSSCILCSC*ELKNISLALEPLKT
Trigger: GGTCTTCAGCGGCTCCAGAGCAAGGGAGATGTTCTTCAATTCTCAGCATGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 90 bp CTCTGCCTCCCGAGTGCTGGGATAAAAAGCGTGCGCCACCACGCCTaGCTGTTTGTTTATAAGATTTATTTATTTGATGTTAGTACACTG +
Preference number: 1 (lower is better)
Translates to: LCLPSAGIKSVRHHA*LFVYKIYLFDVSTL
Trigger: CAGTGTACTAACATCAAATAAATAAATCTTATAAACAAACAGCCAGGCGTGGTGGCGCACGCTTTTTATCCCAGCACTCGGGAGGCAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 90 bp ACCCAGGGAGAAGAAAAATGTAATAATTTATCCAACAAGAGCAGCTaGCAGCCAACCGGGCCTTATTACTTGCCACGTAATTCACCCTGT +
Preference number: 1 (lower is better)
Translates to: TQGEEKCNNLSNKSS*QPTGPYYLPRNSPC
Trigger: ACAGGGTGAATTACGTGGCAAGTAATAAGGCCCGGTTGGCTGTCAGCTGCTCTTGTTGGATAAATTATTACATTTTTCTTCTCCCTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 90 bp ATAACAATATTAACTGTGGATCAGGATCAAGTAGTCCGCAGACTATaGTTCCAGGAGATGCAGATGCTGTGTGCCACTCACCATATCTAC +
Preference number: 1 (lower is better)
Translates to: ITILTVDQDQVVRRL*FQEMQMLCATHHIY
Trigger: GTAGATATGGTGAGTGGCACACAGCATCTGCATCTCCTGGAACCATAGTCTGCGGACTACTTGATCCTGATCCACAGTTAATATTGTTAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR GCA 90 bp CGTGATCGATTGATCGATTGCCCACATGTGGACTCCTGGCTTATATaGCATTTGAGAGTGTTCAAGTTTTGTGAGAGACAGGTTATGATT +
Preference number: 1 (lower is better)
Translates to: RDRLIDCPHVDSWLI*HLRVFKFCERQVMI
Trigger: AATCATAACCTGTCTCTCACAAAACTTGAACACTCTCAAATGGCATATAAGCCAGGAGTCCACATGTGGGCAATCGATCAATCGATCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 90 bp TTTTCCAGAATTGCACCATCTTTGTATTCTGCAACACTGTTCTCCTaGGTTCTTTTTAAGTCCCTGACTTGTTACTTGTTACAATCCATC +
Preference number: 1 (lower is better)
Translates to: FSRIAPSLYSATLFS*VLFKSLTCYLLQSI
Trigger: GATGGATTGTAACAAGTAACAAGTCAGGGACTTAAAAAGAACCCAGGAGAACAGTGTTGCAGAATACAAAGATGGTGCAATTCTGGAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 90 bp CTCCAGCTCCCTAATTCCTGGTTTTATTTAGTTAATAAAATACCCTaGTCTTTGTTACCTTTGCAAACTAAGGACCAACGATCAACTACC +
Preference number: 1 (lower is better)
Translates to: LQLPNSWFYLVNKIP*SLLPLQTKDQRSTT
Trigger: GGTAGTTGATCGTTGGTCCTTAGTTTGCAAAGGTAACAAAGATCAGGGTATTTTATTAACTAAATAAAACCAGGAATTAGGGAGCTGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 90 bp AAGGTTGTGTGTGTGTCTTTCATTTGGGAACAAAAACCATTGAGGTaGGAAACAACCTTGTGTAGGGATATATTAAAAATAATACTCCTA +
Preference number: 1 (lower is better)
Translates to: KVVCVSFIWEQKPLR*ETTLCRDILKIILL
Trigger: TAGGAGTATTATTTTTAATATATCCCTACACAAGGTTGTTTCCCACCTCAATGGTTTTTGTTCCCAAATGAAAGACACACACACAACCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CCA 90 bp CCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAAAGGGCTGGCACAGGGTaGACCAGCCCAGGGCACAGG +
Preference number: 2 (lower is better)
Translates to: PPCVDGVAPKLQKRLQRQRAGTG*TSPGHR
Trigger: CCTGTGCCCTGGGCTGGTCCACCCTGTGCCAGCCCT...TTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR GCA 90 bp AGTCCAGCCCTGGTGTGCTGTGCATGTCCCTTGTTGCACACTGACGACACTGTGCAAAGGGAGCTTCCCTaGCACAGCCAGCCCTCTGAT +
Preference number: 2 (lower is better)
Translates to: SPALVCCACPLLHTDDTVQRELP*HSQPSD
Trigger: ATCAGAGGGCTGGCTGTGGCAGGGAAGCTCCCTTTG...CACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR TCA 90 bp CCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTGGAGTGTGGGACTGGGGGAGAAGCAAGTaGCAGGGATGCTTGCTAGGA +
Preference number: 2 (lower is better)
Translates to: PPFPREESSRTSCFGVWDWGRSK*QGCLLG
Trigger: TCCTAGCAAGCATCCCTGTCACTTGCTTCTCCCCCA...GTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR GCA 90 bp AGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTCCAGGTTGGCATAAATaGTGCCCCCTAGGTCACCTG +
Preference number: 2 (lower is better)
Translates to: SPTVSMESLLVWMGWLPSPGWHK*CPLGHL
Trigger: CAGGTGACCTAGGGGGCAGCATTTATGCCAACCTGG...ACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp CTGGGGACCAAACTAAGGCACCAGGCTCGCATTGGCACTGCAAGTGTCTTTACCTCCAACAAGAGCAGCTaGCAGCCAACCGGGCCTTAT +
Preference number: 2 (lower is better)
Translates to: LGTKLRHQARIGTASVFTSNKSS*QPTGPY
Trigger: ATAAGGCCCGGTTGGCTGTCAGCTGCTCTTGTTGGA...GGTAAAGACACTTGCAGTGCCAATGCGAGCCTGGTGCCTTAGTTTGGTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CCA 90 bp CTGAAGACCAGAAGCCATGCTGTGGCTGTGGTTTCAACACAGCATCTGAAACTGGGCAGAGTCCAGCCCTaGTGTGCTGTGCATGTCCCT +
Preference number: 2 (lower is better)
Translates to: LKTRSHAVAVVSTQHLKLGRVQP*CAVHVP
Trigger: AGGGACATGCACAGCACACCAGGGCTGGACTCTGCC...CAGTTTCAGATGCTGTGTTGAAACCACAGCCACAGCATGGCTTCTGGTCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CCA 90 bp GCATTGAGGGAACAGAGAATGGCGCTGTTTCCAGATAGGCTAGGCCTCCACTTCCCCTGTAGCTCCTGTTaGCCGGGTGTGTTAGTGAGA +
Preference number: 2 (lower is better)
Translates to: ALREQRMALFPDRLGLHFPCSSC*PGVLVR
Trigger: TCTCACTAACACACCCGGCCAACAGGAGCTACAGGG...GAAGTGGAGGCCTAGCCTATCTGGAAACAGCGCCATTCTCTGTTCCCTCAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 90 bp GTCCTAGGAGGATCCGGTAACGGAAAAGATCCAGGAAGCTTCCAGTaGCCCTGTAGCTCCTGTTGGCCGGGTGTGTTAGTGAGAATGTAC +
Preference number: 2 (lower is better)
Translates to: VLGGSGNGKDPGSFQ*PCSSCWPGVLVRMY
Trigger: GTACATTCTCACTAACACACCCGGCCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTGGATCTTTTCCGTTACCGGATCCTCCTAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 90 bp GCAGCACTGATGGTCAGCTTCCCCAGCAGGGACAAGGAATGGCTGTaGACCACTGCAAACACGCCTGTGTCTTTCTTTTCCGGAAGAAAC +
Preference number: 2 (lower is better)
Translates to: AALMVSFPSRDKEWL*TTANTPVSFFSGRN
Trigger: GTTTCTTCCGGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCATCAGTGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CCA 90 bp AGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTTAACAAAGCCCAGATaGCATGAATGGGGCACAGAG +
Preference number: 2 (lower is better)
Translates to: SPTVSMESLLVWMGWLPSLTKPR*HEWGTE
Trigger: CTCTGTGCCCCATTCATGCCATCTGGGCTTTGTTAA...ACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 90 bp GCTGACCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTaGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTC +
Preference number: 2 (lower is better)
Translates to: ADLHFPERRAAGLRA*ECGTPFTGICGYDV
Trigger: GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGGTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 90 bp AAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTACAGAAAAGGTaGCAGAGACAAGATGAGAAGACGCCAGCAGAGCAAGCTGCTTCT +
Preference number: 2 (lower is better)
Translates to: KPPCVDGVAPKLQKR*QRQDEKTPAEQAAS
Trigger: AGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp CAGTACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCTGCTTGCTAGGAAGATaGCATCTCGGGGAAGGTCTG +
Preference number: 2 (lower is better)
Translates to: QYSKSPDNTEESRNIAGGCLLGR*HLGEGL
Trigger: CAGACCTTCCCCGAGATGTCATCTTCCTAGCAAGCA...GCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR TCA 90 bp GCATTGAGGGAACAGAGAATGGCGCTGTTTCCAGATAGGCTAGGCCTCCACTTCCATAGGCTGCTTGCTTaGGGAAACAGAAGGGGTTCT +
Preference number: 2 (lower is better)
Translates to: ALREQRMALFPDRLGLHFHRLLA*GNRRGS
Trigger: AGAACCCCTTCTGTTTCCTCAAGCAAGCAGCCTATG...GAAGTGGAGGCCTAGCCTATCTGGAAACAGCGCCATTCTCTGTTCCCTCAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR GCA 90 bp TCGCTACTCCTCTTACACAACCGACTCTCTGAAACTGTAAGCAAGCCCCCAAGTGGTTGGCATAAATGCTaGCCCCTAGGTCACCTGCAC +
Preference number: 2 (lower is better)
Translates to: SLLLLHNRLSETVSKPPSGWHKC*PLGHLH
Trigger: GTGCAGGTGACCTAGGGGGCAGCATTTATGCCAACC...ACTTGGGGGCTTGCTTACAGTTTCAGAGAGTCGGTTGTGTAAGAGGAGTAGCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR GCA 90 bp AGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTACAGCCACAGAACAGTaGCTAAGACAATGGGTGATT +
Preference number: 2 (lower is better)
Translates to: SPTVSMESLLVWMGWLPSTATEQ*LRQWVI
Trigger: AATCACCCATTGTCTTAGGCACTGTTCTGTGGCTGT...ACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CCA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCGCAAGTTCTCCCTTTTaGAATCTCTCCTCCACCGCC +
Preference number: 2 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFASSPF*NLSSTA
Trigger: GGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGC...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CCA 90 bp GCATTGAGGGAACAGAGAATGGCGCTGTTTCCAGATAGGCTAGGCCTCCACTTCAGCAGGGACAAGGAATaGCTGTTGACCACTGCAAAC +
Preference number: 2 (lower is better)
Translates to: ALREQRMALFPDRLGLHFSRDKE*LLTTAN
Trigger: GTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCT...GAAGTGGAGGCCTAGCCTATCTGGAAACAGCGCCATTCTCTGTTCCCTCAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCAACCAGCCAATGAGCTaGTGGGAAGCTGGGAGCTCT +
Preference number: 2 (lower is better)
Translates to: LRALECGTPFTGICGYDVNQPMS*WEAGSS
Trigger: AGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTT...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR TCA 90 bp AGAGACAAGATGAGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGGTGAGAATGTACACTTaGGCTTGCGGTTCCTCTTGG +
Preference number: 2 (lower is better)
Translates to: RDKMRRRQQSKLLLGRLQVRMYT*ACGSSW
Trigger: CCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCAC...CTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp AGTGGGGTACAGCTCAGAGGTGTAGATGTAAACAATGTTAAAGGCAGCACTGATCACCTGCACTCAGGGTaGGGCCGTAGTACACCAAGC +
Preference number: 2 (lower is better)
Translates to: SGVQLRGVDVNNVKGSTDHLHSG*GRSTPS
Trigger: GCTTGGTGTACTACGGCCTCACCCTGAGTGCAGGTG...ATCAGTGCTGCCTTTAACATTGTTTACATCTACACCTCTGAGCTGTACCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp AGAGACAAGATGAGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGAGGATGGAATCTCTATaGGGCCAGATAGAGCCAGGT +
Preference number: 2 (lower is better)
Translates to: RDKMRRRQQSKLLLGRLQRMESL*GQIEPG
Trigger: ACCTGGCTCTATCTGGCCTCATAGAGATTCCATCCT...CTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR GCA 90 bp CTTCCGACCAAACCATCTTTGGTTAATCAGGTAGATGCAGAGAGGGTAGGATGGCAGGAAGCTTCCAGTTaGCCTGTAGCTCCTGTTGGC +
Preference number: 2 (lower is better)
Translates to: LPTKPSLVNQVDAERVGWQEASS*PVAPVG
Trigger: GCCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTG...CCATCCTACCCTCTCTGCATCTACCTGATTAACCAAAGATGGTTTGGTCGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CCA 90 bp CCGCTGAAGACCAGAAGCCATGCTGTGGCTGTGGTTTCAACACAGCATCTGAAAGAGCTGATGGGAAGCTaGGAGCTCTGTACACATCAA +
Preference number: 2 (lower is better)
Translates to: PLKTRSHAVAVVSTQHLKELMGS*ELCTHQ
Trigger: TTGATGTGTACAGAGCTCCCAGCTTCCCATCAGCTC...TTTCAGATGCTGTGTTGAAACCACAGCCACAGCATGGCTTCTGGTCTTCAGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CCA 90 bp CTCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAGACAAGAAAGAGGATTaGGGTTTCCAGGGCTTGGGA +
Preference number: 2 (lower is better)
Translates to: LTTDGCEPPCGCWELNSGDKKED*GFQGLG
Trigger: TCCCAAGCCCTGGAAACCCCAATCCTCTTTCTTGTC...TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR TCA 90 bp TTTTCCGGAAGAAACATCACAATAAGACAGGCCAGTCCTCCAAGGCACAGAAACGGTTCCTCTTGGCAATaGAGTACAGAGCCTCTTCCG +
Preference number: 2 (lower is better)
Translates to: FSGRNITIRQASPPRHRNGSSWQ*STEPLP
Trigger: CGGAAGAGGCTCTGTACTTCATTGCCAAGAGGAACC...GTTTCTGTGCCTTGGAGGACTGGCCTGTCTTATTGTGATGTTTCTTCCGGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR GCA 90 bp CCAAATTTTTCTCAGACTGGTGTTGGACTTGTTAGTTACGACTCTTGTCAGCTCCAAAGGGAGCTTCCCTaGCACAGCCAGCCCTCTGAT +
Preference number: 2 (lower is better)
Translates to: PNFSQTGVGLVSYDSCQLQRELP*HSQPSD
Trigger: ATCAGAGGGCTGGCTGTGGCAGGGAAGCTCCCTTTG...GAGCTGACAAGAGTCGTAACTAACAAGTCCAACACCAGTCTGAGAAAAATTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CCA 90 bp CCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAAAGAGCAAGCTGCTTCTaGGAAGACTTCAGATCAACA +
Preference number: 2 (lower is better)
Translates to: PPCVDGVAPKLQKRLQRQRASCF*EDFRST
Trigger: TGTTGATCTGAAGTCTTCCCAGAAGCAGCTTGCTCT...TTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 90 bp TCCTGGCCACAGTCACCCGCCAGTGCCCCAGATACTATACTCTTCTaGTATTTTGTGTTCATGCTGAGAATTGAAGAACATCTCCCTTGC +
Preference number: 2 (lower is better)
Translates to: SWPQSPASAPDTILF*YFVFMLRIEEHLPC
Trigger: GCAAGGGAGATGTTCTTCAATTCTCAGCATGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTGGCCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR TCA 90 bp GAGACAGGTTATGATTCATTTGGAAATCCACGGAAGCACTCAATGAAAACCCACTGGGGGAGAAGCAAGTaGCAGGGATGCTTGCTAGGA +
Preference number: 2 (lower is better)
Translates to: ETGYDSFGNPRKHSMKTHWGRSK*QGCLLG
Trigger: TCCTAGCAAGCATCCCTGTCACTTGCTTCTCCCCCA...GTGGGTTTTCATTGAGTGCTTCCGTGGATTTCCAAATGAATCATAACCTGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR TCA 90 bp AGCTGGAGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCAGGCTTATATGCCATTTaGGAGTGTTCAAGTTTTGTG +
Preference number: 2 (lower is better)
Translates to: SWRQRMQACTVSRGIYRAGLYAI*ECSSFV
Trigger: CACAAAACTTGAACACTCTCAAATGGCATATAAGCC...TGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR GCA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCCTGTACACATCAACCTaGACCAGAAGATTCCTGGTG +
Preference number: 2 (lower is better)
Translates to: LRALECGTPFTGICGYDVLYTST*TRRFLV
Trigger: CACCAGGAATCTTCTGGTGCAGGTTGATGTGTACAG...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR GCA 90 bp AGCTGGAGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCAAAGTCATTTACAAAGTaGTTAGCGTGTCACTTGCTC +
Preference number: 2 (lower is better)
Translates to: SWRQRMQACTVSRGIYRAKSFTK*LACHLL
Trigger: GAGCAAGTGACACGCTAAGCACTTTGTAAATGACTT...TGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CCA 90 bp GGGCATCTACAGAGCACCTTTCTACTCTGTGTGCTTTCTACTCCCAAGAGATTATCGATTGCCCACATGTaGACTCCTGGCTTATATGCC +
Preference number: 2 (lower is better)
Translates to: GHLQSTFLLCVLSTPKRLSIAHM*TPGLYA
Trigger: GGCATATAAGCCAGGAGTCCACATGTGGGCAATCGA...TAATCTCTTGGGAGTAGAAAGCACACAGAGTAGAAAGGTGCTCTGTAGATGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR TCA 90 bp GACCAGTACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGACCCTTTATTAGTGAATaGGCACAGACTAAAGGCACA +
Preference number: 2 (lower is better)
Translates to: DQYSKSPDNTEESRNIAGPFISE*AQTKGT
Trigger: TGTGCCTTTAGTCTGTGCTCATTCACTAATAAAGGG...TCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTACTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CCA 90 bp GAGACAGGTTATGATTCATTTGGAAATCCACGGAAGCACTCAATGAAAACCCACGCAAGTTCTCCCTTTTaGAATCTCTCCTCCACCGCC +
Preference number: 2 (lower is better)
Translates to: ETGYDSFGNPRKHSMKTHASSPF*NLSSTA
Trigger: GGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGC...GTGGGTTTTCATTGAGTGCTTCCGTGGATTTCCAAATGAATCATAACCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CCA 90 bp GAGACAGGTTATGATTCATTTGGAAATCCACGGAAGCACTCAATGAAAACCCACCAGCAACCAATGAGCTaGGAACCAGCCAATGAGCTG +
Preference number: 2 (lower is better)
Translates to: ETGYDSFGNPRKHSMKTHQQPMS*EPANEL
Trigger: CAGCTCATTGGCTGGTTCCCAGCTCATTGGTTGCTG...GTGGGTTTTCATTGAGTGCTTCCGTGGATTTCCAAATGAATCATAACCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CCA 90 bp CTGAAGACCAGAAGCCATGCTGTGGCTGTGGTTTCAACACAGCATCTGAAACTGCAAAAACCATTGAGGTaGGAAACAACCTTGTGTAGG +
Preference number: 2 (lower is better)
Translates to: LKTRSHAVAVVSTQHLKLQKPLR*ETTLCR
Trigger: CCTACACAAGGTTGTTTCCCACCTCAATGGTTTTTG...CAGTTTCAGATGCTGTGTTGAAACCACAGCCACAGCATGGCTTCTGGTCTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR TCA 90 bp CAAATTTTTCTCAGACTGGTGTTGGACTTGTTAGTTACGACTCTTGTCAGCTCATGCTTGCTAGGAAGATaGCATCTCGGGGAAGGTCTG +
Preference number: 2 (lower is better)
Translates to: QIFLRLVLDLLVTTLVSSCLLGR*HLGEGL
Trigger: CAGACCTTCCCCGAGATGTCATCTTCCTAGCAAGCA...TGAGCTGACAAGAGTCGTAACTAACAAGTCCAACACCAGTCTGAGAAAAATTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR GCA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCCCTTTCTACTCTGTGTaGTTTCTACTCCCAAGAGAT +
Preference number: 2 (lower is better)
Translates to: LRALECGTPFTGICGYDVPFYSV*FLLPRD
Trigger: ATCTCTTGGGAGTAGAAAGCACACAGAGTAGAAAGG...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR GCA 90 bp ACTCACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGAGCAGCAGGACTTCGTaGTTTGGAGTGTGGGACACC +
Preference number: 2 (lower is better)
Translates to: THHIYITPLISLRKLLWKSSRTS*FGVWDT
Trigger: GGTGTCCCACACTCCAAAGCACGAAGTCCTGCTGCT...CTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR GCA 90 bp ACTCTGTGTGCTTTCTACTCCCAAGAGATTAGCAGACACAGAAATCCTAAACACCCCTCTGATGAGAAATaGTCCGCTAATTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: TLCAFYSQEISRHRNPKHPSDEK*SANSAL
Trigger: AAGGGCAGAATTAGCGGAGCATTTCTCATCAGAGGG...GTGTTTAGGATTTCTGTGTCTGCTAATCTCTTGGGAGTAGAAAGCACACAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR GCA 90 bp CAAATTTTTCTCAGACTGGTGTTGGACTTGTTAGTTACGACTCTTGTCAGCTCAGCTGGAGGCAAAGAATaGAGGCTTGCACAGTTTCCA +
Preference number: 2 (lower is better)
Translates to: QIFLRLVLDLLVTTLVSSAGGKE*RLAQFP
Trigger: TGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGC...TGAGCTGACAAGAGTCGTAACTAACAAGTCCAACACCAGTCTGAGAAAAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR GCA 90 bp CACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGTCCCCCTTTACTGGAATTTaGGGATATGATGTCGCAGGG +
Preference number: 2 (lower is better)
Translates to: HHIYITPLISLRKLLWKSPFTGI*GYDVAG
Trigger: CCCTGCGACATCATATCCGCAAATTCCAGTAAAGGG...GGACTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR GCA 90 bp GTAAAAGCTCTCTTTTATAAGTGTTGTCACAGCCACAGAACAGTGCCTAAGACAATGGCTGTTGACCACTaGAAACACGCCTGTGTCTTT +
Preference number: 2 (lower is better)
Translates to: VKALFYKCCHSHRTVPKTMAVDH*KHACVF
Trigger: AAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCAT...TGTCTTAGGCACTGTTCTGTGGCTGTGACAACACTTATAAAAGAGAGCTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp CACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGTCCGGGAACAAAAACCATTaGGGTGGGAAACAACCTTGT +
Preference number: 2 (lower is better)
Translates to: HHIYITPLISLRKLLWKSGNKNH*GGKQPC
Trigger: ACAAGGTTGTTTCCCACCTCAATGGTTTTTGTTCCC...GGACTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR TCA 90 bp GTAAAAGCTCTCTTTTATAAGTGTTGTCACAGCCACAGAACAGTGCCTAAGACATGCACACAAACCAGATaGACATCAGGATCAGGGTAT +
Preference number: 2 (lower is better)
Translates to: VKALFYKCCHSHRTVPKTCTQTR*TSGSGY
Trigger: ATACCCTGATCCTGATGTTCATCTGGTTTGTGTGCA...TGTCTTAGGCACTGTTCTGTGGCTGTGACAACACTTATAAAAGAGAGCTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR TCA 90 bp ACTCTGTGTGCTTTCTACTCCCAAGAGATTAGCAGACACAGAAATCCTAAACACGGCTTATATGCCATTTaGGAGTGTTCAAGTTTTGTG +
Preference number: 2 (lower is better)
Translates to: TLCAFYSQEISRHRNPKHGLYAI*ECSSFV
Trigger: CACAAAACTTGAACACTCTCAAATGGCATATAAGCC...GTGTTTAGGATTTCTGTGTCTGCTAATCTCTTGGGAGTAGAAAGCACACAGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR GCA 90 bp GCCTCCTATGCAAATATGAGGACCTCAATTAGGATCCATGTAAAAGCTGGATGCATAATTATTAAACTGTaGTTAGAGGACTACCCAGGG +
Preference number: 2 (lower is better)
Translates to: ASYANMRTSIRIHVKAGCIIIKL*LEDYPG
Trigger: CCCTGGGTAGTCCTCTAAGCACAGTTTAATAATTAT...GCATCCAGCTTTTACATGGATCCTAATTGAGGTCCTCATATTTGCATAGGAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR TCA 90 bp ACTCACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGCCCTTTATTAGTGAATaGGCACAGACTAAAGGCACA +
Preference number: 2 (lower is better)
Translates to: THHIYITPLISLRKLLWKPFISE*AQTKGT
Trigger: TGTGCCTTTAGTCTGTGCTCATTCACTAATAAAGGG...CTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR TCA 90 bp CTACCAAGTAAGACTTCTGTGGCTTTGTACCATCAATACTCATTAGCAGCCATCGTACCAAATTTTCTCTaGTGGGTTATTGTAGCTCTT +
Preference number: 2 (lower is better)
Translates to: LPSKTSVALYHQYSLAAIVPNFL*WVIVAL
Trigger: AAGAGCTACAATAACCCATCAGAGAAAATTTGGTAC...GATGGCTGCTAATGAGTATTGATGGTACAAAGCCACAGAAGTCTTACTTGGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CAA 90 bp TGTACAAGCAAAATAGGCTACCTACCAAGTAAGACTTCTGTGGCTTaGTACCATCAATACTCATTAGCAGCCATCATAGGGAATAAAATT +
Preference number: 2 (lower is better)
Translates to: CTSKIGYLPSKTSVA*YHQYSLAAIIGNKI
Trigger: AATTTTATTCCCTATGATGGCTGCTAATGAGTATTGATGGTACAAAGCCACAGAAGTCTTACTTGGTAGGTAGCCTATTTTGCTTGTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 72 bp CTCAGGAGTGGAAGCCGGTGGGTCTTGGAGCCTCCCTaGCCAGCCAGTCTAGCCAGAACGGAGCGCTCTAGA +
Preference number: 3 (lower is better)
Translates to: LRSGSRWVLEPP*PASLARTERSR
Trigger: TCTAGAGCGCTCCGTTCTGGCTAGACTGGCTGGCCAGGGAGGCTCCAAGACCCACCGGCTTCCACTCCTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 72 bp TCATCTTTAGCATCAGTGCTCAGGAGTGGAAGCCGGTaGGTCTTGGAGCCTCCCTGGCCAGCCAGTCTAGCC +
Preference number: 3 (lower is better)
Translates to: SSLASVLRSGSR*VLEPPWPASLA
Trigger: GGCTAGACTGGCTGGCCAGGGAGGCTCCAAGACCCACCGGCTTCCACTCCTGAGCACTGATGCTAAAGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR GCA 72 bp GTAGAGGCTGATGCAGGGCAGAGTCCAGCCCTGGTGTaGTGTGCATGTCCCTTGTTGCACACTGACGACACT +
Preference number: 3 (lower is better)
Translates to: VEADAGQSPALV*CACPLLHTDDT
Trigger: AGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACTCTGCCCTGCATCAGCCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp TCTTTCGAGTGCTCTTTAGGGAGACTGACAAAGGGCTaGCACAGGGTGGACCAGCCCAGGGCACAGGAAGCA +
Preference number: 3 (lower is better)
Translates to: SFECSLGRLTKG*HRVDQPRAQEA
Trigger: TGCTTCCTGTGCCCTGGGCTGGTCCACCCTGTGCCAGCCCTTTGTCAGTCTCCCTAAAGAGCACTCGAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CCA 72 bp AGCAGTAACATCATCTTTAGCATCAGTGCTCAGGAGTaGAAGCCGGTGGGTCTTGGAGCCTCCCTGGCCAGC +
Preference number: 3 (lower is better)
Translates to: SSNIIFSISAQE*KPVGLGASLAS
Trigger: GCTGGCCAGGGAGGCTCCAAGACCCACCGGCTTCCACTCCTGAGCACTGATGCTAAAGATGATGTTACTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 72 bp GCTGCACCAGCAACCAATGAGCTGGGAACCAGCCAATaGGCTGATGGGAAGCTGGGAGCTCTGTACACATCA +
Preference number: 3 (lower is better)
Translates to: AAPATNELGTSQ*ADGKLGALYTS
Trigger: TGATGTGTACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCATTGGTTGCTGGTGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp GCACTGATGGTCAGCTTCCCCAGCAGGGACAAGGAATaGCTGTTGACCACTGCAAACACGCCTGTGTCTTTC +
Preference number: 3 (lower is better)
Translates to: ALMVSFPSRDKE*LLTTANTPVSF
Trigger: GAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCATCAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR TCA 72 bp AGCCCTGGTGTGCTGTGCATGTCCCTTGTTGCACACTaGCGACACTGTGAGAGACTCTCCCCTCTTAAGTCA +
Preference number: 3 (lower is better)
Translates to: SPGVLCMSLVAH*RHCERLSPLKS
Trigger: TGACTTAAGAGGGGAGAGTCTCTCACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR TCA 72 bp TGGTCAGCTTCCCCAGCAGGGACAAGGAATGGCTGTTaGCCACTGCAAACACGCCTGTGTCTTTCTTTTCCG +
Preference number: 3 (lower is better)
Translates to: WSASPAGTRNGC*PLQTRLCLSFP
Trigger: CGGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CCA 72 bp GCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATaGGGTGGCTCCCAAGTTACAGAAAAGGTTGCAGAG +
Preference number: 3 (lower is better)
Translates to: APLLAWKASLCG*GGSQVTEKVAE
Trigger: CTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CAA 90 bp CTGGGGACCAAACTAAGGCACCAGGCTCGCATTGGCACTGCAAGTGTCTTTACCTCCCCTCAAAACTGTTaGCACAAGAGGGTCTGCATG +
Preference number: 3 (lower is better)
Translates to: LGTKLRHQARIGTASVFTSPQNC*HKRVCM
Trigger: CATGCAGACCCTCTTGTGCAAACAGTTTTGAGGGGA...GGTAAAGACACTTGCAGTGCCAATGCGAGCCTGGTGCCTTAGTTTGGTCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR GCA 72 bp ACAGAGGAGTCCAGGAACATAGCTGGAGGCAAAGAATaGAGGCTTGCACAGTTTCCAGGGGCATCTACAGAG +
Preference number: 3 (lower is better)
Translates to: TEESRNIAGGKE*RLAQFPGASTE
Trigger: CTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCTATGTTCCTGGACTCCTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR GCA 72 bp CCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTaGTTTGGAGTGTGGGACACCCTTTACTGGAATTTG +
Preference number: 3 (lower is better)
Translates to: PPFPREESSRTS*FGVWDTLYWNL
Trigger: CAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR GCA 72 bp ACAAGAGCAGCTGACAGCCAACCGGGCCTTATTACTTaGCACGTAATTCACCCTGTGGTCTGTCCTTCTACC +
Preference number: 3 (lower is better)
Translates to: TRAADSQPGLIT*HVIHPVVCPST
Trigger: GGTAGAAGGACAGACCACAGGGTGAATTACGTGGCAAGTAATAAGGCCCGGTTGGCTGTCAGCTGCTCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 72 bp AGCAATGACTCCCTCAACGCAGCAAGTTCTCCCTTTTaGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAA +
Preference number: 3 (lower is better)
Translates to: SNDSLNAASSPF*NLSSTASPIWK
Trigger: TTTCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGTTGAGGGAGTCATTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp ATGAGCTGGGAACCAGCCAATGAGCTGATGGGAAGCTaGGAGCTCTGTACACATCAACCTGCACCAGAAGAT +
Preference number: 3 (lower is better)
Translates to: MSWEPANELMGS*ELCTHQPAPED
Trigger: ATCTTCTGGTGCAGGTTGATGTGTACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp GCAGACACAGAAATCCTAAACACACAGCCGTTTCCCTaGTCGGGGCGTGATCGATTGATCGATTGCCCACAT +
Preference number: 3 (lower is better)
Translates to: ADTEILNTQPFP*SGRDRLIDCPH
Trigger: ATGTGGGCAATCGATCAATCGATCACGCCCCGACCAGGGAAACGGCTGTGTGTTTAGGATTTCTGTGTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp AAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTaGAGGCAAAGAATGCAGGCTTGCACAGTTTCCAGG +
Preference number: 3 (lower is better)
Translates to: KPRQHRGVQEHS*RQRMQACTVSR
Trigger: CCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CAA 90 bp AGAGACAAGATGAGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGGACAAGGAATGGCTGTaGACCACTGCAAACACGCCT +
Preference number: 3 (lower is better)
Translates to: RDKMRRRQQSKLLLGRLQDKEWL*TTANTP
Trigger: AGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTC...CTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CAA 90 bp CCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAAGCATCCATAGGCTGCTaGCTTGAGGAAACAGAAGGG +
Preference number: 3 (lower is better)
Translates to: PPCVDGVAPKLQKRLQRQASIGC*LEETEG
Trigger: CCCTTCTGTTTCCTCAAGCAAGCAGCCTATGGATGC...TTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CAA 90 bp CAGGACTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGTGCTGTGCATGTCCCTaGTTGCACACTGACGACACT +
Preference number: 3 (lower is better)
Translates to: QDFVLWSVGHPLLEFADMCCACP*LHTDDT
Trigger: AGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCA...CATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CAA 90 bp TCGCTACTCCTCTTACACAACCGACTCTCTGAAACTGTAAGCAAGCCCCCAAGTAGCTTGCGGTTCCTCTaGGCAATGAAGTACAGAGCC +
Preference number: 3 (lower is better)
Translates to: SLLLLHNRLSETVSKPPSSLRFL*AMKYRA
Trigger: GGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCT...ACTTGGGGGCTTGCTTACAGTTTCAGAGAGTCGGTTGTGTAAGAGGAGTAGCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR TCA 72 bp TTCTGGAAGTCCTTTTCTTCCTCTCCTAAGGAGAGCTaGCCTCCATTTCCCAGAGAGGAGAGCAGCAGGACT +
Preference number: 3 (lower is better)
Translates to: FWKSFSSSPKES*PPFPREESSRT
Trigger: AGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGGTCAGCTCTCCTTAGGAGAGGAAGAAAAGGACTTCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR TCA 72 bp GGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAAGATaGGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAA +
Preference number: 3 (lower is better)
Translates to: GSQVTEKVAETR*EDASRASCFWE
Trigger: TTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR GCA 72 bp TGGACGGTGCCTATCCTGGCCACAGTCACCCGCCAGTaGCCCAGATACTATACTCTTCTTGTATTTTGTGTT +
Preference number: 3 (lower is better)
Translates to: WTVPILATVTRQ*PRYYTLLVFCV
Trigger: AACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTGGCCAGGATAGGCACCGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 72 bp ATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTaGAGTGTGGGACACCCTTTACTGGAATTTGCGGAT +
Preference number: 3 (lower is better)
Translates to: ISQRGEQQDFVL*SVGHPLLEFAD
Trigger: ATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CAA 90 bp CACTCGCTACTCCTCTTACACAACCGACTCTCTGAAACTGTAAGCAAGCCCCCAAATGTACACTTGAGCTaGCGGTTCCTCTTGGCAATG +
Preference number: 3 (lower is better)
Translates to: HSLLLLHNRLSETVSKPPNVHLS*RFLLAM
Trigger: CATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATT...TGGGGGCTTGCTTACAGTTTCAGAGAGTCGGTTGTGTAAGAGGAGTAGCGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR TCA 72 bp AGCCCACAACGTGAGCAGTTTAAGCAGAAAAGGCATTaGGGGAACAGAGAATGGCGCTGTTTCCAGATAGGC +
Preference number: 3 (lower is better)
Translates to: SPQREQFKQKRH*GNREWRCFQIG
Trigger: GCCTATCTGGAAACAGCGCCATTCTCTGTTCCCTCAATGCCTTTTCTGCTTAAACTGCTCACGTTGTGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR GCA 72 bp TGTGAGAGACTCTCCCCTCTTAAGTCATTTACAAAGTaGTTAGCGTGTCACTTGCTCGCCACCCTCAGTCTG +
Preference number: 3 (lower is better)
Translates to: CERLSPLKSFTK*LACHLLATLSL
Trigger: CAGACTGAGGGTGGCGAGCAAGTGACACGCTAAGCACTTTGTAAATGACTTAAGAGGGGAGAGTCTCTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp ACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTaGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAAG +
Preference number: 3 (lower is better)
Translates to: TVSMESLLVWMG*LPSYRKGCRDK
Trigger: CTTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CAA 90 bp CACAGTCACCCGCCAGTGCCCCAGATACTATACTCTTCTTGTATTTTGTGTTCAAGCAAGTTCTCCCTTTaGGAATCTCTCCTCCACCGC +
Preference number: 3 (lower is better)
Translates to: HSHPPVPQILYSSCILCSSKFSL*ESLLHR
Trigger: GCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCT...TGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CAA 90 bp CCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTGGAGTGTGGGACTGGCTTATATGCCATTaGAGAGTGTTCAAGTTTTGT +
Preference number: 3 (lower is better)
Translates to: PPFPREESSRTSCFGVWDWLICH*RVFKFC
Trigger: ACAAAACTTGAACACTCTCAAATGGCATATAAGCCA...GTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR TCA 72 bp GAAGCTTTTGTGGAAGTCCTAGGACATATACGGGAATaGGTTCTCCACTTCTGTTATACGGGGCCCAGGCAT +
Preference number: 3 (lower is better)
Translates to: EAFVEVLGHIRE*VLHFCYTGPRH
Trigger: ATGCCTGGGCCCCGTATAACAGAAGTGGAGAACTCATTCCCGTATATGTCCTAGGACTTCCACAAAAGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR GCA 72 bp TTTGTGTTCATGCTGAGAATTGAAGAACATCTCCCTTaGTCTGGAGCCGCTGAAGACCAGAAGCCATGCTGT +
Preference number: 3 (lower is better)
Translates to: FVFMLRIEEHLP*SGAAEDQKPCC
Trigger: ACAGCATGGCTTCTGGTCTTCAGCGGCTCCAGAGCAAGGGAGATGTTCTTCAATTCTCAGCATGAACACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR GCA 72 bp CCGCAGACTATGGTTCCAGGAGATGCAGATGCTGTGTaGCACTCACCATATCTACATCACACCTCTTATTTC +
Preference number: 3 (lower is better)
Translates to: PQTMVPGDADAV*HSPYLHHTSYF
Trigger: GAAATAAGAGGTGTGATGTAGATATGGTGAGTGGCACACAGCATCTGCATCTCCTGGAACCATAGTCTGCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR GCA 72 bp AGACTTCAGATCAACAGGTGGAGAGCATCCATAGGCTaGTTGCTTGAGGAAACAGAAGGGGTTCTTTCGAGT +
Preference number: 3 (lower is better)
Translates to: RLQINRWRASIG*LLEETEGVLSS
Trigger: ACTCGAAAGAACCCCTTCTGTTTCCTCAAGCAAGCAGCCTATGGATGCTCTCCACCTGTTGATCTGAAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR-3UTR CAA 90 bp GCCTCCTATGCAAATATGAGGACCTCAATTAGGATCCATGTAAAAGCTGGATGCATGGAGGGTAGGCAGTaGACCAGCTATTGTGCTCCT +
Preference number: 3 (lower is better)
Translates to: ASYANMRTSIRIHVKAGCMEGRQ*TSYCAP
Trigger: AGGAGCACAATAGCTGGTCAACTGCCTACCCTCCAT...GCATCCAGCTTTTACATGGATCCTAATTGAGGTCCTCATATTTGCATAGGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CAA 90 bp AAGGAATGGCTGTTGACCACTGCAAACACGCCTGTGTCTTTCTTTTCCGGAAGAAGTGAGAATGTACACTaGAGCTTGCGGTTCCTCTTG +
Preference number: 3 (lower is better)
Translates to: KEWLLTTANTPVSFFSGRSENVH*SLRFLL
Trigger: CAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACT...TCTTCCGGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR TCA 72 bp TCAGGCGTGTCAATAGGAAGTGATGCATGCACATTGTaGGGTAGCCCACAACGTGAGCAGTTTAAGCAGAAA +
Preference number: 3 (lower is better)
Translates to: SGVSIGSDACTL*GSPQREQFKQK
Trigger: TTTCTGCTTAAACTGCTCACGTTGTGGGCTACCTCACAATGTGCATGCATCACTTCCTATTGACACGCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CCA 72 bp CTTGCTCGCCACCCTCAGTCTGTAAAGTTTCCTCGTTaGCTGGGCATGATTTTGAAGTTATTGCTGATGCTA +
Preference number: 3 (lower is better)
Translates to: LARHPQSVKFPR*LGMILKLLLML
Trigger: TAGCATCAGCAATAACTTCAAAATCATGCCCAGCCAACGAGGAAACTTTACAGACTGAGGGTGGCGAGCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp ACGAAAGCACAGTTAACAAAGCCCAGATGGCATGAATaGGGCACAGAGATAAGAGACCCTTACCTGATGACA +
Preference number: 3 (lower is better)
Translates to: TKAQLTKPRWHE*GTEIRDPYLMT
Trigger: TGTCATCAGGTAAGGGTCTCTTATCTCTGTGCCCCATTCATGCCATCTGGGCTTTGTTAACTGTGCTTTCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR TCA 72 bp AGAAATGCTCCGCTAATTCTGCCCTTTATTAGTGAATaGGCACAGACTAAAGGCACAAGCTGCACCAGCAAC +
Preference number: 3 (lower is better)
Translates to: RNAPLILPFISE*AQTKGTSCTSN
Trigger: GTTGCTGGTGCAGCTTGTGCCTTTAGTCTGTGCTCATTCACTAATAAAGGGCAGAATTAGCGGAGCATTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR GCA 72 bp CGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTaGGGATATGATGTCGCAGGGAGTTCTATAATCTTT +
Preference number: 3 (lower is better)
Translates to: RALECGTPFTGI*GYDVAGSSIIF
Trigger: AAAGATTATAGAACTCCCTGCGACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR-3UTR CAA 90 bp CTCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATTACATGACAGTTACTaGAACATGTGTGCACTAAGA +
Preference number: 3 (lower is better)
Translates to: LTTDGCEPPCGCWELNSGLHDSY*NMCALR
Trigger: TCTTAGTGCACACATGTTCAAGTAACTGTCATGTAA...TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 72 bp CGTGATCGATTGATCGATTGCCCACATGTGGACTCCTaGCTTATATGCCATTTGAGAGTGTTCAAGTTTTGT +
Preference number: 3 (lower is better)
Translates to: RDRLIDCPHVDS*LICHLRVFKFC
Trigger: ACAAAACTTGAACACTCTCAAATGGCATATAAGCCAGGAGTCCACATGTGGGCAATCGATCAATCGATCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR GCA 72 bp ATGAGGACCTCAATTAGGATCCATGTAAAAGCTGGATaGAGCAGTAACATCATCTTTAGCATCAGTGCTCAG +
Preference number: 3 (lower is better)
Translates to: MRTSIRIHVKAG*SSNIIFSISAQ
Trigger: CTGAGCACTGATGCTAAAGATGATGTTACTGCTGCATCCAGCTTTTACATGGATCCTAATTGAGGTCCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CCA 72 bp CCGAGTGCTGGGATAAAAAGCGTGCGCCACCACGCCTaGCTGTTTGTTTATAAGATTTATTTATTTGATGTT +
Preference number: 3 (lower is better)
Translates to: PSAGIKSVRHHA*LFVYKIYLFDV
Trigger: AACATCAAATAAATAAATCTTATAAACAAACAGCCAGGCGTGGTGGCGCACGCTTTTTATCCCAGCACTCGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 72 bp CAGATACTATACTCTTCTTGTATTTTGTGTTCATGCTaGGAATTGAAGAACATCTCCCTTGCTCTGGAGCCG +
Preference number: 3 (lower is better)
Translates to: QILYSSCILCSC*ELKNISLALEP
Trigger: CGGCTCCAGAGCAAGGGAGATGTTCTTCAATTCTCAGCATGAACACAAAATACAAGAAGAGTATAGTATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CAA 90 bp CTACCAAGTAAGACTTCTGTGGCTTTGTACCATCAATACTCATTAGCAGCCATCTGGCTTATATGCCATTaGAGAGTGTTCAAGTTTTGT +
Preference number: 3 (lower is better)
Translates to: LPSKTSVALYHQYSLAAIWLICH*RVFKFC
Trigger: ACAAAACTTGAACACTCTCAAATGGCATATAAGCCA...GATGGCTGCTAATGAGTATTGATGGTACAAAGCCACAGAAGTCTTACTTGGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 72 bp CTGGCTTATATGCCATTTGAGAGTGTTCAAGTTTTGTaGGAGACAGGTTATGATTCATTTGGAAATCCACGG +
Preference number: 3 (lower is better)
Translates to: LAYMPFESVQVL*ETGYDSFGNPR
Trigger: CCGTGGATTTCCAAATGAATCATAACCTGTCTCTCACAAAACTTGAACACTCTCAAATGGCATATAAGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CCA 72 bp ATTGCACCATCTTTGTATTCTGCAACACTGTTCTCCTaGGTTCTTTTTAAGTCCCTGACTTGTTACTTGTTA +
Preference number: 3 (lower is better)
Translates to: IAPSLYSATLFS*VLFKSLTCYLL
Trigger: TAACAAGTAACAAGTCAGGGACTTAAAAAGAACCCAGGAGAACAGTGTTGCAGAATACAAAGATGGTGCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR-3UTR CAA 90 bp ACTCACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGAGGTGGGAAACAACCTaGTGTAGGGATATATTAAAA +
Preference number: 3 (lower is better)
Translates to: THHIYITPLISLRKLLWKRWETT*CRDILK
Trigger: TTTTAATATATCCCTACACAAGGTTGTTTCCCACCT...CTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTGAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR TCA 72 bp TTGTTACTTGTTACAATCCATCTCACAGATCACTGGTaGCTTCTAGTAGGTTCTTCATTTGTCAAAGTTGTT +
Preference number: 3 (lower is better)
Translates to: LLLVTIHLTDHW*LLVGSSFVKVV
Trigger: AACAACTTTGACAAATGAAGAACCTACTAGAAGTCACCAGTGATCTGTGAGATGGATTGTAACAAGTAACAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CAA 72 bp TTAGCATCAGTGCTCAGGAGTGGAAGCCGGTGGGTCTaGGAGCCTCCCTGGCCAGCCAGTCTAGCCAGAACG +
Preference number: 4 (lower is better)
Translates to: LASVLRSGSRWV*EPPWPASLART
Trigger: CGTTCTGGCTAGACTGGCTGGCCAGGGAGGCTCCAAGACCCACCGGCTTCCACTCCTGAGCACTGATGCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR CCA 90 bp CCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTGGAGTGTGGGACCAGTCCCCGAAGGCCTaGCCTTTGCCCAAAGTCTGG +
Preference number: 4 (lower is better)
Translates to: PPFPREESSRTSCFGVWDQSPKA*PLPKVW
Trigger: CCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTG...GTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTGTGCCCAGTAGGCGGTaGCCACGCACTCATTTAGCA +
Preference number: 4 (lower is better)
Translates to: SPTVSMESLLVWMGWLPSVPSRR*PRTHLA
Trigger: TGCTAAATGAGTGCGTGGGCACCGCCTACTGGGCAC...ACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp AGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTAATCGATCCTGCAAGTaGCCAGTAGGCGGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: SPTVSMESLLVWMGWLPSNRSCK*PVGGAH
Trigger: GTGGGCACCGCCTACTGGGCACTTGCAGGATCGATT...ACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp CAACCAATGAGCTGGGAACCAGCCAATGAGCTGATGGGAAGCTGGGAGCTCTGTTGGTTGCTGTGGCTCTaGTTGGGCAGGAGATCGGCC +
Preference number: 4 (lower is better)
Translates to: QPMSWEPANELMGSWELCWLLWL*LGRRSA
Trigger: GGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCA...ACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCATTGGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp TCAGCCCCAGTCCCGAACAAGTCAGCAATGACTCCCTCAACGCAGCAAGTTCTCCGACTCGGGAGAACATaGAGCACGCTCCCAGGCCAA +
Preference number: 4 (lower is better)
Translates to: SAPVPNKSAMTPSTQQVLRLGRT*STLPGQ
Trigger: TTGGCCTGGGAGCGTGCTCCATGTTCTCCCGAGTCG...GAGAACTTGCTGCGTTGAGGGAGTCATTGCTGACTTGTTCGGGACTGGGGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp CAGAGTCCAGCCCTGGTGTGCTGTGCATGTCCCTTGTaGCACACTGACGACACTGTGAGAGACTCTCCCCTC +
Preference number: 4 (lower is better)
Translates to: QSPALVCCACPL*HTDDTVRDSPL
Trigger: GAGGGGAGAGTCTCTCACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp CCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTGGAGTGTGGGACCCAGGTTGGCATAAATaGTGCCCCCTAGGTCACCTG +
Preference number: 4 (lower is better)
Translates to: PPFPREESSRTSCFGVWDPGWHK*CPLGHL
Trigger: CAGGTGACCTAGGGGGCAGCATTTATGCCAACCTGG...GTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAAGCTGGTTGCTGTGGCTCTaGTTGGGCAGGAGATCGGCC +
Preference number: 4 (lower is better)
Translates to: SKFSLLESLLHRLSHLESWLLWL*LGRRSA
Trigger: GGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCA...GCTTTCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGCTGGAGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACAGTCCCCGAAGGCCTaGCCTTTGCCCAAAGTCTGG +
Preference number: 4 (lower is better)
Translates to: SWRQRMQACTVSRGIYRAQSPKA*PLPKVW
Trigger: CCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTG...TGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp ACGCAGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAGCTTATGGATCTCACTaGCATTGGCGGTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: TQQVLPFGISPPPPLPSGAYGSH*HWRSAA
Trigger: GGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGC...TCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAAGCGTGCCCAGTAGGCGGTaGCCACGCACTCATTTAGCA +
Preference number: 4 (lower is better)
Translates to: SKFSLLESLLHRLSHLESVPSRR*PRTHLA
Trigger: TGCTAAATGAGTGCGTGGGCACCGCCTACTGGGCAC...GCTTTCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp ACGCAGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAGGTTGGCATAAATGCTaGCCCCTAGGTCACCTGCAC +
Preference number: 4 (lower is better)
Translates to: TQQVLPFGISPPPPLPSGGWHKC*PLGHLH
Trigger: GTGCAGGTGACCTAGGGGGCAGCATTTATGCCAACC...TCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp CTGGGGACCAAACTAAGGCACCAGGCTCGCATTGGCACTGCAAGTGTCTTTACCCCAGGTTGGCATAAATaGTGCCCCCTAGGTCACCTG +
Preference number: 4 (lower is better)
Translates to: LGTKLRHQARIGTASVFTPGWHK*CPLGHL
Trigger: CAGGTGACCTAGGGGGCAGCATTTATGCCAACCTGG...GGTAAAGACACTTGCAGTGCCAATGCGAGCCTGGTGCCTTAGTTTGGTCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR CCA 90 bp CACTCGCTACTCCTCTTACACAACCGACTCTCTGAAACTGTAAGCAAGCCCCCACAGTCCCCGAAGGCCTaGCCTTTGCCCAAAGTCTGG +
Preference number: 4 (lower is better)
Translates to: HSLLLLHNRLSETVSKPPQSPKA*PLPKVW
Trigger: CCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTG...TGGGGGCTTGCTTACAGTTTCAGAGAGTCGGTTGTGTAAGAGGAGTAGCGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp CAGTACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCGGATCTCACTGCCATTaGCGGTCAGCAGCCAGTCCC +
Preference number: 4 (lower is better)
Translates to: QYSKSPDNTEESRNIAGGGSHCH*RSAASP
Trigger: GGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCC...GCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp GGATCCGGTAACGGAAAAGATCCAGGAAGCTTCCAGTaGCCCTGTAGCTCCTGTTGGCCGGGTGTGTTAGTG +
Preference number: 4 (lower is better)
Translates to: GSGNGKDPGSFQ*PCSSCWPGVLV
Trigger: CACTAACACACCCGGCCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTGGATCTTTTCCGTTACCGGATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp CAACCAATGAGCTGGGAACCAGCCAATGAGCTGATGGGAAGCTGGGAGCTCTGTCAACAAACACACCACTaGAGAAAGAGGAGCTGGCCG +
Preference number: 4 (lower is better)
Translates to: QPMSWEPANELMGSWELCQQTHH*RKRSWP
Trigger: CGGCCAGCTCCTCTTTCTTCAGTGGTGTGTTTGTTG...ACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCATTGGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp CAGGACTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGCACCTGCACTCAGGGTaGGGCCGTAGTACACCAAGC +
Preference number: 4 (lower is better)
Translates to: QDFVLWSVGHPLLEFADMHLHSG*GRSTPS
Trigger: GCTTGGTGTACTACGGCCTCACCCTGAGTGCAGGTG...CATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp TCGCTACTCCTCTTACACAACCGACTCTCTGAAACTGTAAGCAAGCCCCCAAGTTGGTTGCTGTGGCTCTaGTTGGGCAGGAGATCGGCC +
Preference number: 4 (lower is better)
Translates to: SLLLLHNRLSETVSKPPSWLLWL*LGRRSA
Trigger: GGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCA...ACTTGGGGGCTTGCTTACAGTTTCAGAGAGTCGGTTGTGTAAGAGGAGTAGCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp CAACCAATGAGCTGGGAACCAGCCAATGAGCTGATGGGAAGCTGGGAGCTCTGTAAAGTCTGGTTGCTGTaGCTCTGGTTGGGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: QPMSWEPANELMGSWELCKVWLL*LWLGRR
Trigger: TCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTT...ACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCATTGGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp CCCAGCAGGGACAAGGAATGGCTGTTGACCACTGCAAACACGCCTGTGTCTTTCAAAGTCTGGTTGCTGTaGCTCTGGTTGGGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: PSRDKEWLLTTANTPVSFKVWLL*LWLGRR
Trigger: TCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTT...GAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp AGGCACAGAAACGCTGCTAGTGTCCGCTTCCGACCAAACCATCTTTGGTTAATCGGATCTCACTGCCATTaGCGGTCAGCAGCCAGTCCC +
Preference number: 4 (lower is better)
Translates to: RHRNAASVRFRPNHLWLIGSHCH*RSAASP
Trigger: GGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCC...GATTAACCAAAGATGGTTTGGTCGGAAGCGGACACTAGCAGCGTTTCTGTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp AGTCCAGCCCTGGTGTGCTGTGCATGTCCCTTGTTGCACACTGACGACACTGTGAGCAGGGACAAGGAATaGCTGTTGACCACTGCAAAC +
Preference number: 4 (lower is better)
Translates to: SPALVCCACPLLHTDDTVSRDKE*LLTTAN
Trigger: GTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCT...CACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp GACCAGTACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGACGACTCGGGAGAACATaGAGCACGCTCCCAGGCCAA +
Preference number: 4 (lower is better)
Translates to: DQYSKSPDNTEESRNIAGRLGRT*STLPGQ
Trigger: TTGGCCTGGGAGCGTGCTCCATGTTCTCCCGAGTCG...TCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTACTGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp ACCTGCACTCAGGGTGAGGCCGTAGTACACCAAGCTGCACACAAACCAGATGAACAACAAACACACCACTaGAGAAAGAGGAGCTGGCCG +
Preference number: 4 (lower is better)
Translates to: TCTQGEAVVHQAAHKPDEQQTHH*RKRSWP
Trigger: CGGCCAGCTCCTCTTTCTTCAGTGGTGTGTTTGTTG...TTCATCTGGTTTGTGTGCAGCTTGGTGTACTACGGCCTCACCCTGAGTGCAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp ATCAACCTGCACCAGAAGATTCCTGGTGGGGGAGAAGCAAGTGACAGGGATGCTGGTTCCTCTTGGCAATaGAGTACAGAGCCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: INLHQKIPGGGEASDRDAGSSWQ*STEPLP
Trigger: CGGAAGAGGCTCTGTACTTCATTGCCAAGAGGAACC...AGCATCCCTGTCACTTGCTTCTCCCCCACCAGGAATCTTCTGGTGCAGGTTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCCACCTGCACTCAGGGTaGGGCCGTAGTACACCAAGC +
Preference number: 4 (lower is better)
Translates to: LRALECGTPFTGICGYDVHLHSG*GRSTPS
Trigger: GCTTGGTGTACTACGGCCTCACCCTGAGTGCAGGTG...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp ACGCAGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAGGATGGAATCTCTATaGGGCCAGATAGAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: TQQVLPFGISPPPPLPSGRMESL*GQIEPG
Trigger: ACCTGGCTCTATCTGGCCTCATAGAGATTCCATCCT...TCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCCGAAGGCCTGGCCTTTaGCCAAAGTCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFRRPGL*PKSGCC
Trigger: ACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCG...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGCTGGAGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTGCCCAAAGTCTaGTTGCTGTGGCTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: SWRQRMQACTVSRGIYRAPLPKV*LLWLWL
Trigger: CAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGG...TGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp CCTCCATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTTGGAGTGTGGGACAAATGCACGTGCTTATaGATCTCACTGCCATTGGCG +
Preference number: 4 (lower is better)
Translates to: PPFPREESSRTSCFGVWDKCTCL*ISLPLA
Trigger: CGCCAATGGCAGTGAGATCCATAAGCACGTGCATTT...GTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCCCCTGTAGCTCCTGTTaGCCGGGTGTGTTAGTGAGA +
Preference number: 4 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFPCSSC*PGVLVR
Trigger: TCTCACTAACACACCCGGCCAACAGGAGCTACAGGG...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp ACGCAGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAGCAGGGACAAGGAATaGCTGTTGACCACTGCAAAC +
Preference number: 4 (lower is better)
Translates to: TQQVLPFGISPPPPLPSGSRDKE*LLTTAN
Trigger: GTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCT...TCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp CATTTCCCAGAGAGGAGAGCAGCAGGACTTCGTGCTTaGGAGTGTGGGACACCCTTTACTGGAATTTGCGGA +
Preference number: 4 (lower is better)
Translates to: HFPERRAAGLRA*ECGTPFTGICG
Trigger: TCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTGCTGCTCTCCTCTCTGGGAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp ATGGTCAGCTTCCCCAGCAGGGACAAGGAATGGCTGTaGACCACTGCAAACACGCCTGTGTCTTTCTTTTCC +
Preference number: 4 (lower is better)
Translates to: MVSFPSRDKEWL*TTANTPVSFFS
Trigger: GGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp AGAGACAAGATGAGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGATGTTCCCTGAAGGTTaGCCAGAACAGCTAGGGTCC +
Preference number: 4 (lower is better)
Translates to: RDKMRRRQQSKLLLGRLQMFPEG*PEQLGS
Trigger: GGACCCTAGCTGTTCTGGTCAACCTTCAGGGAACAT...CTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp CTGAAGACCAGAAGCCATGCTGTGGCTGTGGTTTCAACACAGCATCTGAAACTGTGCCCAAAGTCTGGTTaGTGTGGCTCTGGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: LKTRSHAVAVVSTQHLKLCPKSG*CGSGWA
Trigger: TGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCA...CAGTTTCAGATGCTGTGTTGAAACCACAGCCACAGCATGGCTTCTGGTCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp AGGGACAAGGAATGGCTGTTGACCACTGCAAACACGCCTGTGTCTTTCTTTTCCGCTTATGGATCTCACTaGCATTGGCGGTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: RDKEWLLTTANTPVSFFSAYGSH*HWRSAA
Trigger: GGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGC...GGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp AGTCCAGCCCTGGTGTGCTGTGCATGTCCCTTGTTGCACACTGACGACACTGTGTTGCTGAAATGCACGTaGTTATGGATCTCACTGCCA +
Preference number: 4 (lower is better)
Translates to: SPALVCCACPLLHTDDTVLLKCT*LWISLP
Trigger: TGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAA...CACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp CAGGACTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGGGTTGGCATAAATGCTaGCCCCTAGGTCACCTGCAC +
Preference number: 4 (lower is better)
Translates to: QDFVLWSVGHPLLEFADMGWHKC*PLGHLH
Trigger: GTGCAGGTGACCTAGGGGGCAGCATTTATGCCAACC...CATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCCCTTTGCCCAAAGTCTaGTTGCTGTGGCTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFPLPKV*LLWLWL
Trigger: CAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGG...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp CAACCAATGAGCTGGGAACCAGCCAATGAGCTGATGGGAAGCTGGGAGCTCTGTAAATGCACGTGCTTATaGATCTCACTGCCATTGGCG +
Preference number: 4 (lower is better)
Translates to: QPMSWEPANELMGSWELCKCTCL*ISLPLA
Trigger: CGCCAATGGCAGTGAGATCCATAAGCACGTGCATTT...ACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCATTGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp CAGGACTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGTCCTCCAGGAGCGGATaGAGTACCCTAATAGGGCAT +
Preference number: 4 (lower is better)
Translates to: QDFVLWSVGHPLLEFADMSSRSG*STLIGH
Trigger: ATGCCCTATTAGGGTACTTCATCCGCTCCTGGAGGA...CATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp CAGGACTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGGGTTCCTCTTGGCAATaGAGTACAGAGCCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: QDFVLWSVGHPLLEFADMGSSWQ*STEPLP
Trigger: CGGAAGAGGCTCTGTACTTCATTGCCAAGAGGAACC...CATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp CAACCAATGAGCTGGGAACCAGCCAATGAGCTGATGGGAAGCTGGGAGCTCTGTTGCACACAAACCAGATaGACATCAGGATCAGGGTAT +
Preference number: 4 (lower is better)
Translates to: QPMSWEPANELMGSWELCCTQTR*TSGSGY
Trigger: ATACCCTGATCCTGATGTTCATCTGGTTTGTGTGCA...ACAGAGCTCCCAGCTTCCCATCAGCTCATTGGCTGGTTCCCAGCTCATTGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp GAATACATCTCTGGTGCTGAAGCTGAGGCACTAAGGATGATGGGGCTCTGCTTCAGGATGGAATCTCTATaGGGCCAGATAGAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: EYISGAEAEALRMMGLCFRMESL*GQIEPG
Trigger: ACCTGGCTCTATCTGGCCTCATAGAGATTCCATCCT...GAAGCAGAGCCCCATCATCCTTAGTGCCTCAGCTTCAGCACCAGAGATGTATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AAGGAATGGCTGTTGACCACTGCAAACACGCCTGTGTCTTTCTTTTCCGGAAGACGAAGGCCTGGCCTTTaGCCAAAGTCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: KEWLLTTANTPVSFFSGRRRPGL*PKSGCC
Trigger: ACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCG...TCTTCCGGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp ATCAACCTGCACCAGAAGATTCCTGGTGGGGGAGAAGCAAGTGACAGGGATGCTTCCCTCCATTCATCATaGCCACCAAGAAGCGAGTTA +
Preference number: 4 (lower is better)
Translates to: INLHQKIPGGGEASDRDASLHSS*PPRSEL
Trigger: TAACTCGCTTCTTGGTGGGCATGATGAATGGAGGGA...AGCATCCCTGTCACTTGCTTCTCCCCCACCAGGAATCTTCTGGTGCAGGTTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp TACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAAACAGGAAGCTTCCAGTTaGCCTGTAGCTCCTGTTGGC +
Preference number: 4 (lower is better)
Translates to: YSKSPDNTEESRNIAGGKQEASS*PVAPVG
Trigger: GCCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTG...TTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAAGCATGGCTGTTGACCACTaGAAACACGCCTGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: SKFSLLESLLHRLSHLESMAVDH*KHACVF
Trigger: AAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCAT...GCTTTCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp GCCTCCTATGCAAATATGAGGACCTCAATTAGGATCCATGTAAAAGCTGGATGCGGATCTCACTGCCATTaGCGGTCAGCAGCCAGTCCC +
Preference number: 4 (lower is better)
Translates to: ASYANMRTSIRIHVKAGCGSHCH*RSAASP
Trigger: GGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCC...GCATCCAGCTTTTACATGGATCCTAATTGAGGTCCTCATATTTGCATAGGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CAA 72 bp TGTGTGGATGGGGTGGCTCCCAAGTTACAGAAAAGGTaGCAGAGACAAGATGAGAAGACGCCAGCAGAGCAA +
Preference number: 4 (lower is better)
Translates to: CVDGVAPKLQKR*QRQDEKTPAEQ
Trigger: TTGCTCTGCTGGCGTCTTCTCATCTTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp AGTGAGAATGTACACTTGAGCTTGCGGTTCCTCTTGGCAATGAAGTACAGAGCCTCCTCCAGGAGCGGATaGAGTACCCTAATAGGGCAT +
Preference number: 4 (lower is better)
Translates to: SENVHLSLRFLLAMKYRASSRSG*STLIGH
Trigger: ATGCCCTATTAGGGTACTTCATCCGCTCCTGGAGGA...GGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp CACAGTCACCCGCCAGTGCCCCAGATACTATACTCTTCTTGTATTTTGTGTTCAGCTTATGGATCTCACTaGCATTGGCGGTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: HSHPPVPQILYSSCILCSAYGSH*HWRSAA
Trigger: GGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGC...TGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp CACAGTCACCCGCCAGTGCCCCAGATACTATACTCTTCTTGTATTTTGTGTTCACAGGAAGCTTCCAGTTaGCCTGTAGCTCCTGTTGGC +
Preference number: 4 (lower is better)
Translates to: HSHPPVPQILYSSCILCSQEASS*PVAPVG
Trigger: GCCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTG...TGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp GAATACATCTCTGGTGCTGAAGCTGAGGCACTAAGGATGATGGGGCTCTGCTTCATGGCTGTTGACCACTaGAAACACGCCTGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: EYISGAEAEALRMMGLCFMAVDH*KHACVF
Trigger: AAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCAT...GAAGCAGAGCCCCATCATCCTTAGTGCCTCAGCTTCAGCACCAGAGATGTATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCCTGGGTCTCCTCATCTaGATCATAGAACTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFLGLLI*IIELFL
Trigger: GAGGAAGAGTTCTATGATGCAGATGAGGAGACCCAG...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp TTGGCCGGGTGTGTTAGTGAGAATGTACACTTGAGCTaGCGGTTCCTCTTGGCAATGAAGTACAGAGCCTCT +
Preference number: 4 (lower is better)
Translates to: LAGCVSENVHLS*RFLLAMKYRAS
Trigger: AGAGGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACTAACACACCCGGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 72 bp CTCCTGTTGGCCGGGTGTGTTAGTGAGAATGTACACTaGAGCTTGCGGTTCCTCTTGGCAATGAAGTACAGA +
Preference number: 4 (lower is better)
Translates to: LLLAGCVSENVH*SLRFLLAMKYR
Trigger: TCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACTAACACACCCGGCCAACAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 72 bp CTTCAGATCAACAGGTGGAGAGCATCCATAGGCTGCTaGCTTGAGGAAACAGAAGGGGTTCTTTCGAGTGCT +
Preference number: 4 (lower is better)
Translates to: LQINRWRASIGC*LEETEGVLSSA
Trigger: AGCACTCGAAAGAACCCCTTCTGTTTCCTCAAGCAAGCAGCCTATGGATGCTCTCCACCTGTTGATCTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp GCATTGAGGGAACAGAGAATGGCGCTGTTTCCAGATAGGCTAGGCCTCCACTTCAATCGATCTGAAAGCTaGCCAAAGGAGATAACACCA +
Preference number: 4 (lower is better)
Translates to: ALREQRMALFPDRLGLHFNRSES*PKEITP
Trigger: TGGTGTTATCTCCTTTGGTCAGCTTTCAGATCGATT...GAAGTGGAGGCCTAGCCTATCTGGAAACAGCGCCATTCTCTGTTCCCTCAATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp TACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAAAGTGAGAATGTACACTTaGGCTTGCGGTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: YSKSPDNTEESRNIAGGKVRMYT*ACGSSW
Trigger: CCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCAC...TTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCGTGAGAATGTACACTTaGGCTTGCGGTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: LRALECGTPFTGICGYDVVRMYT*ACGSSW
Trigger: CCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCAC...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp CCGCTGAAGACCAGAAGCCATGCTGTGGCTGTGGTTTCAACACAGCATCTGAAATGCACACAAACCAGATaGACATCAGGATCAGGGTAT +
Preference number: 4 (lower is better)
Translates to: PLKTRSHAVAVVSTQHLKCTQTR*TSGSGY
Trigger: ATACCCTGATCCTGATGTTCATCTGGTTTGTGTGCA...TTTCAGATGCTGTGTTGAAACCACAGCCACAGCATGGCTTCTGGTCTTCAGCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp AGGCACAGAAACGCTGCTAGTGTCCGCTTCCGACCAAACCATCTTTGGTTAATCTCCCTCCATTCATCATaGCCACCAAGAAGCGAGTTA +
Preference number: 4 (lower is better)
Translates to: RHRNAASVRFRPNHLWLISLHSS*PPRSEL
Trigger: TAACTCGCTTCTTGGTGGGCATGATGAATGGAGGGA...GATTAACCAAAGATGGTTTGGTCGGAAGCGGACACTAGCAGCGTTTCTGTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp CTACCAAGTAAGACTTCTGTGGCTTTGTACCATCAATACTCATTAGCAGCCATCAATCGATCCTGCAAGTaGCCAGTAGGCGGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: LPSKTSVALYHQYSLAAINRSCK*PVGGAH
Trigger: GTGGGCACCGCCTACTGGGCACTTGCAGGATCGATT...GATGGCTGCTAATGAGTATTGATGGTACAAAGCCACAGAAGTCTTACTTGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR CCA 90 bp CACAGTCACCCGCCAGTGCCCCAGATACTATACTCTTCTTGTATTTTGTGTTCATCACTCAGCCGACCCTaGGAGTATAACCAACGAGGT +
Preference number: 4 (lower is better)
Translates to: HSHPPVPQILYSSCILCSSLSRP*EYNQRG
Trigger: ACCTCGTTGGTTATACTCCCAGGGTCGGCTGAGTGA...TGAACACAAAATACAAGAAGAGTATAGTATCTGGGGCACTGGCGGGTGACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp CCGCTGAAGACCAGAAGCCATGCTGTGGCTGTGGTTTCAACACAGCATCTGAAAAATCGATCTGAAAGCTaGCCAAAGGAGATAACACCA +
Preference number: 4 (lower is better)
Translates to: PLKTRSHAVAVVSTQHLKNRSES*PKEITP
Trigger: TGGTGTTATCTCCTTTGGTCAGCTTTCAGATCGATT...TTTCAGATGCTGTGTTGAAACCACAGCCACAGCATGGCTTCTGGTCTTCAGCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCCTGGGTCTCCTCATCTaGATCATAGAACTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: LRALECGTPFTGICGYDVLGLLI*IIELFL
Trigger: GAGGAAGAGTTCTATGATGCAGATGAGGAGACCCAG...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGTGGGGTACAGCTCAGAGGTGTAGATGTAAACAATGTTAAAGGCAGCACTGATCCTTTGCCCAAAGTCTaGTTGCTGTGGCTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: SGVQLRGVDVNNVKGSTDPLPKV*LLWLWL
Trigger: CAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGG...ATCAGTGCTGCCTTTAACATTGTTTACATCTACACCTCTGAGCTGTACCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp ACTCTGTGTGCTTTCTACTCCCAAGAGATTAGCAGACACAGAAATCCTAAACACCCCTGTAGCTCCTGTTaGCCGGGTGTGTTAGTGAGA +
Preference number: 4 (lower is better)
Translates to: TLCAFYSQEISRHRNPKHPCSSC*PGVLVR
Trigger: TCTCACTAACACACCCGGCCAACAGGAGCTACAGGG...GTGTTTAGGATTTCTGTGTCTGCTAATCTCTTGGGAGTAGAAAGCACACAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR TCA 90 bp TCGCTACTCCTCTTACACAACCGACTCTCTGAAACTGTAAGCAAGCCCCCAAGTCAAGAGCAAAACCTGTaGGATAGACTTTTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: SLLLLHNRLSETVSKPPSQEQNL*DRLFSF
Trigger: GAAGGAGAAAAGTCTATCTCACAGGTTTTGCTCTTG...ACTTGGGGGCTTGCTTACAGTTTCAGAGAGTCGGTTGTGTAAGAGGAGTAGCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR TCA 90 bp ACTCTGTGTGCTTTCTACTCCCAAGAGATTAGCAGACACAGAAATCCTAAACACATGTTCCCTGAAGGTTaGCCAGAACAGCTAGGGTCC +
Preference number: 4 (lower is better)
Translates to: TLCAFYSQEISRHRNPKHMFPEG*PEQLGS
Trigger: GGACCCTAGCTGTTCTGGTCAACCTTCAGGGAACAT...GTGTTTAGGATTTCTGTGTCTGCTAATCTCTTGGGAGTAGAAAGCACACAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp CTACCAAGTAAGACTTCTGTGGCTTTGTACCATCAATACTCATTAGCAGCCATCACAAGGAATGGCTGTTaGCCACTGCAAACACGCCTG +
Preference number: 4 (lower is better)
Translates to: LPSKTSVALYHQYSLAAITRNGC*PLQTRL
Trigger: CAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGT...GATGGCTGCTAATGAGTATTGATGGTACAAAGCCACAGAAGTCTTACTTGGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp GAGACAGGTTATGATTCATTTGGAAATCCACGGAAGCACTCAATGAAAACCCACACAAGGAATGGCTGTTaGCCACTGCAAACACGCCTG +
Preference number: 4 (lower is better)
Translates to: ETGYDSFGNPRKHSMKTHTRNGC*PLQTRL
Trigger: CAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGT...GTGGGTTTTCATTGAGTGCTTCCGTGGATTTCCAAATGAATCATAACCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp AAGGAATGGCTGTTGACCACTGCAAACACGCCTGTGTCTTTCTTTTCCGGAAGATGTAGCTCCAATCAGTaGAATGAGGATGGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: KEWLLTTANTPVSFFSGRCSSNQ*NEDGFC
Trigger: ACAGAAGCCATCCTCATTGCACTGATTGGAGCTACA...TCTTCCGGAAAAGAAAGACACAGGCGTGTTTGCAGTGGTCAACAGCCATTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp GTAAAAGCTCTCTTTTATAAGTGTTGTCACAGCCACAGAACAGTGCCTAAGACATGCCCAAAGTCTGGTTaGTGTGGCTCTGGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: VKALFYKCCHSHRTVPKTCPKSG*CGSGWA
Trigger: TGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCA...TGTCTTAGGCACTGTTCTGTGGCTGTGACAACACTTATAAAAGAGAGCTTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp CACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGTCCCGAAGGCCTGGCCTTTaGCCAAAGTCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: HHIYITPLISLRKLLWKSRRPGL*PKSGCC
Trigger: ACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCG...GGACTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp TACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAAATTGCTGAAATGCACGTaGTTATGGATCTCACTGCCA +
Preference number: 4 (lower is better)
Translates to: YSKSPDNTEESRNIAGGKLLKCT*LWISLP
Trigger: TGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAA...TTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp CAGTACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAAACTGTTGCTGAAATaGACGTGCTTATGGATCTCA +
Preference number: 4 (lower is better)
Translates to: QYSKSPDNTEESRNIAGGKLLLK*TCLWIS
Trigger: TGAGATCCATAAGCACGTGCATTTCAGCAACAGTTT...GCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGCTGGAGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACTTTGTAAGATCGGTTaGCAATTAAAAACCACTCAG +
Preference number: 4 (lower is better)
Translates to: SWRQRMQACTVSRGIYRALCKIG*QLKTTQ
Trigger: CTGAGTGGTTTTTAATTGCCAACCGATCTTACAAAG...TGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCTCCAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR GCA 90 bp GGGCATCTACAGAGCACCTTTCTACTCTGTGTGCTTTCTACTCCCAAGAGATTATGTAGCTCCAATCAGTaGAATGAGGATGGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: GHLQSTFLLCVLSTPKRLCSSNQ*NEDGFC
Trigger: ACAGAAGCCATCCTCATTGCACTGATTGGAGCTACA...TAATCTCTTGGGAGTAGAAAGCACACAGAGTAGAAAGGTGCTCTGTAGATGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CCA 90 bp AGTGGGGTACAGCTCAGAGGTGTAGATGTAAACAATGTTAAAGGCAGCACTGATAAATGCACGTGCTTATaGATCTCACTGCCATTGGCG +
Preference number: 4 (lower is better)
Translates to: SGVQLRGVDVNNVKGSTDKCTCL*ISLPLA
Trigger: CGCCAATGGCAGTGAGATCCATAAGCACGTGCATTT...ATCAGTGCTGCCTTTAACATTGTTTACATCTACACCTCTGAGCTGTACCCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CCA 90 bp CCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTACAGAAAAGGTTGCAGAGACAACTTTGTAAGATCGGTTaGCAATTAAAAACCACTCAG +
Preference number: 4 (lower is better)
Translates to: PPCVDGVAPKLQKRLQRQLCKIG*QLKTTQ
Trigger: CTGAGTGGTTTTTAATTGCCAACCGATCTTACAAAG...TTGTCTCTGCAACCTTTTCTGTAACTTGGGAGCCACCCCATCCACACAAGGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp AGTGGGGTACAGCTCAGAGGTGTAGATGTAAACAATGTTAAAGGCAGCACTGATTTGCTGAAATGCACGTaGTTATGGATCTCACTGCCA +
Preference number: 4 (lower is better)
Translates to: SGVQLRGVDVNNVKGSTDLLKCT*LWISLP
Trigger: TGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAA...ATCAGTGCTGCCTTTAACATTGTTTACATCTACACCTCTGAGCTGTACCCCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR GCA 90 bp AGTGAGAATGTACACTTGAGCTTGCGGTTCCTCTTGGCAATGAAGTACAGAGCCAAACTGTTGCTGAAATaGACGTGCTTATGGATCTCA +
Preference number: 4 (lower is better)
Translates to: SENVHLSLRFLLAMKYRAKLLLK*TCLWIS
Trigger: TGAGATCCATAAGCACGTGCATTTCAGCAACAGTTT...GGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
3UTR CAA 72 bp GATTGCCCACATGTGGACTCCTGGCTTATATGCCATTaGAGAGTGTTCAAGTTTTGTGAGAGACAGGTTATG +
Preference number: 4 (lower is better)
Translates to: DCPHVDSWLICH*RVFKFCERQVM
Trigger: CATAACCTGTCTCTCACAAAACTTGAACACTCTCAAATGGCATATAAGCCAGGAGTCCACATGTGGGCAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp GAGACAGGTTATGATTCATTTGGAAATCCACGGAAGCACTCAATGAAAACCCACTGTAGCTCCAATCAGTaGAATGAGGATGGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: ETGYDSFGNPRKHSMKTHCSSNQ*NEDGFC
Trigger: ACAGAAGCCATCCTCATTGCACTGATTGGAGCTACA...GTGGGTTTTCATTGAGTGCTTCCGTGGATTTCCAAATGAATCATAACCTGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR GCA 90 bp GGGCATCTACAGAGCACCTTTCTACTCTGTGTGCTTTCTACTCCCAAGAGATTAAAACTGTTGCTGAAATaGACGTGCTTATGGATCTCA +
Preference number: 4 (lower is better)
Translates to: GHLQSTFLLCVLSTPKRLKLLLK*TCLWIS
Trigger: TGAGATCCATAAGCACGTGCATTTCAGCAACAGTTT...TAATCTCTTGGGAGTAGAAAGCACACAGAGTAGAAAGGTGCTCTGTAGATGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp GTTAATGTTCTCCCCCAAATTTTTCTCAGACTGGTGTaGGACTTGTTAGTTACGACTCTTGTCAGCTCAAAG +
Preference number: 4 (lower is better)
Translates to: VNVLPQIFLRLV*DLLVTTLVSSK
Trigger: CTTTGAGCTGACAAGAGTCGTAACTAACAAGTCCAACACCAGTCTGAGAAAAATTTGGGGGAGAACATTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp ACTCACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGCCTTCCAAATCGATCTaGAAGCTGACCAAAGGAGAT +
Preference number: 4 (lower is better)
Translates to: THHIYITPLISLRKLLWKPSKSI*KLTKGD
Trigger: ATCTCCTTTGGTCAGCTTTCAGATCGATTTGGAAGG...CTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR TCA 90 bp CACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGTCCCAAGAGCAAAACCTGTaGGATAGACTTTTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: HHIYITPLISLRKLLWKSQEQNL*DRLFSF
Trigger: GAAGGAGAAAAGTCTATCTCACAGGTTTTGCTCTTG...GGACTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CAA 72 bp AAGTTTCCTCGTTGGCTGGGCATGATTTTGAAGTTATaGCTGATGCTAGAATCTCACAAAGAAAAACAGTCC +
Preference number: 4 (lower is better)
Translates to: KFPRWLGMILKL*LMLESHKEKQS
Trigger: GGACTGTTTTTCTTTGTGAGATTCTAGCATCAGCAATAACTTCAAAATCATGCCCAGCCAACGAGGAAACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
3UTR CAA 72 bp TACCCCATGCATGAATTTTCCAGAATTGCACCATCTTaGTATTCTGCAACACTGTTCTCCTGGGTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: YPMHEFSRIAPS*YSATLFSWVLF
Trigger: AAAAAGAACCCAGGAGAACAGTGTTGCAGAATACAAAGATGGTGCAATTCTGGAAAATTCATGCATGGGGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
3UTR CAA 72 bp ATTTGGGAACAAAAACCATTGAGGTGGGAAACAACCTaGTGTAGGGATATATTAAAAATAATACTCCTACAG +
Preference number: 4 (lower is better)
Translates to: IWEQKPLRWETT*CRDILKIILLQ
Trigger: CTGTAGGAGTATTATTTTTAATATATCCCTACACAAGGTTGTTTCCCACCTCAATGGTTTTTGTTCCCAAAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS GCA 90 bp CACTGCCATTGGCGGTCAGCAGCCAGTCCCCGAAGGCCTGGCCTTTaGCCAAAGTCTGGTTGCTGTGGCTCTGGTTGGGCAGGAGATCGG +
Preference number: 5 (lower is better)
Translates to: HCHWRSAASPRRPGL*PKSGCCGSGWAGDR
Trigger: CCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 90 bp TGGATCTCACTGCCATTGGCGGTCAGCAGCCAGTCCCCGAAGGCCTaGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTGGTTGGGCAGG +
Preference number: 5 (lower is better)
Translates to: WISLPLAVSSQSPKA*PLPKVWLLWLWLGR
Trigger: CCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS TCA 90 bp GCAGAGACCACTGTACTTCCTTCAGGGAGGGGACGAAGGGGGCAATaGTCCCACCGACTCGGGAGAACATGGAGCACGCTCCCAGGCCAA +
Preference number: 5 (lower is better)
Translates to: AETTVLPSGRGRRGQ*SHRLGRTWSTLPGQ
Trigger: TTGGCCTGGGAGCGTGCTCCATGTTCTCCCGAGTCGGTGGGATCATTGCCCCCTTCGTCCCCTCCCTGAAGGAAGTACAGTGGTCTCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS CCA 90 bp AGCCAGTCCCCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTTGCTGTaGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCT +
Preference number: 5 (lower is better)
Translates to: SQSPKAWPLPKVWLL*LWLGRRSAMSQWYA
Trigger: AGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 90 bp TCCCCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTaGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCTGGTGTA +
Preference number: 5 (lower is better)
Translates to: SPKAWPLPKVWLLWL*LGRRSAMSQWYAGV
Trigger: TACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp AGTCCAGCCCTGGTGTGCTGTGCATGTCCCTTGTTGCACACTGACGACACTGTGTGGATCTCACTGCCATaGGCGGTCAGCAGCCAGTCC +
Preference number: 5 (lower is better)
Translates to: SPALVCCACPLLHTDDTVWISLP*AVSSQS
Trigger: GGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCA...CACAGTGTCGTCAGTGTGCAACAAGGGACATGCACAGCACACCAGGGCTGGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp AGCCCCACTGTTAGCATGGAAAGCCTCCTTGTGTGGATGGGGTGGCTCCCAAGTTGGATCTCACTGCCATaGGCGGTCAGCAGCCAGTCC +
Preference number: 5 (lower is better)
Translates to: SPTVSMESLLVWMGWLPSWISLP*AVSSQS
Trigger: GGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCA...ACTTGGGAGCCACCCCATCCACACAAGGAGGCTTTCCATGCTAACAGTGGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS GCA 90 bp GCTGTGGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATaGTGGTGTAGCTCCAATCAGTGCAATGAGGATGGCTTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: AVALVGQEIGHVPVV*WCSSNQCNEDGFCG
Trigger: GCCACAGAAGCCATCCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 90 bp GTGGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCTaGTGTAGCTCCAATCAGTGCAATGAGGATGGCTTCTGTGGCCAC +
Preference number: 5 (lower is better)
Translates to: VALVGQEIGHVPVVC*CSSNQCNEDGFCGH
Trigger: GTGGCCACAGAAGCCATCCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp ACGCAGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGACCGAAGGCCTGGCCTTaGCCCAAAGTCTGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: TQQVLPFGISPPPPLPSGPKAWP*PKVWLL
Trigger: CAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGG...TCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS GCA 90 bp CGAAGAAGAGACCACCAATCGATCCTGCAAGTGCCCAGTAGGCGGTaGCCACGCACTCATTTAGCAAGACAAAGGCCACCAGGGACATCC +
Preference number: 5 (lower is better)
Translates to: RRRDHQSILQVPSRR*PRTHLARQRPPGTS
Trigger: GGATGTCCCTGGTGGCCTTTGTCTTGCTAAATGAGTGCGTGGGCACCGCCTACTGGGCACTTGCAGGATCGATTGGTGGTCTCTTCTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS GCA 90 bp CGACCCTCAGAGGCAATAGAGGTGAAACTGTTGCTGAAATGCACGTaGTTATGGATCTCACTGCCATTGGCGGTCAGCAGCCAGTCCCCG +
Preference number: 5 (lower is better)
Translates to: RPSEAIEVKLLLKCT*LWISLPLAVSSQSP
Trigger: CGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTCTGAGGGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190824.7
CDS CCA 90 bp TGGTTGCTGTGGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTaGTATGCTGGTGTAGCTCCAATCAGTGCAATGAGGATGGCTTCT +
Preference number: 5 (lower is better)
Translates to: WLLWLWLGRRSAMSQ*YAGVAPISAMRMAS
Trigger: AGAAGCCATCCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp AGAGACAAGATGAGAAGACGCCAGCAGAGCAAGCTGCTTCTGGGAAGACTTCAGCCGAAGGCCTGGCCTTaGCCCAAAGTCTGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: RDKMRRRQQSKLLLGRLQPKAWP*PKVWLL
Trigger: CAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGG...CTGAAGTCTTCCCAGAAGCAGCTTGCTCTGCTGGCGTCTTCTCATCTTGTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS GCA 90 bp GAGATCGGCCATGTCCCAGTGGTATGCTGGTGTAGCTCCAATCAGTaGAATGAGGATGGCTTCTGTGGCCACATAAAGCTGCAGCAGCAC +
Preference number: 5 (lower is better)
Translates to: EIGHVPVVCWCSSNQ*NEDGFCGHIKLQQH
Trigger: GTGCTGCTGCAGCTTTATGTGGCCACAGAAGCCATCCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 90 bp TCAGAGGCAATAGAGGTGAAACTGTTGCTGAAATGCACGTGCTTATaGATCTCACTGCCATTGGCGGTCAGCAGCCAGTCCCCGAAGGCC +
Preference number: 5 (lower is better)
Translates to: SEAIEVKLLLKCTCL*ISLPLAVSSQSPKA
Trigger: GGCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCCCAGGAAGCTTCCAGTaGCCCTGTAGCTCCTGTTGG +
Preference number: 5 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFPGSFQ*PCSSCW
Trigger: CCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTGG...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp TCAGCCCCAGTCCCGAACAAGTCAGCAATGACTCCCTCAACGCAGCAAGTTCTCGACAAGGAATGGCTGTaGACCACTGCAAACACGCCT +
Preference number: 5 (lower is better)
Translates to: SAPVPNKSAMTPSTQQVLDKEWL*TTANTP
Trigger: AGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTC...GAGAACTTGCTGCGTTGAGGGAGTCATTGCTGACTTGTTCGGGACTGGGGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS GCA 90 bp AACCACTCAGAGGCAATAGAGGTGAAACTGTTGCTGAAATGCACGTaGTTATGGATCTCACTGCCATTGGCGGTCAGCAGCCAGTCCCCG +
Preference number: 5 (lower is better)
Translates to: NHSEAIEVKLLLKCT*LWISLPLAVSSQSP
Trigger: CGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTCTGAGTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS-3UTR CAA 90 bp TACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAAACCGAAGGCCTGGCCTTaGCCCAAAGTCTGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: YSKSPDNTEESRNIAGGKPKAWP*PKVWLL
Trigger: CAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGG...TTTGCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp CAGGACTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGGACAAGGAATGGCTGTaGACCACTGCAAACACGCCT +
Preference number: 5 (lower is better)
Translates to: QDFVLWSVGHPLLEFADMDKEWL*TTANTP
Trigger: AGGCGTGTTTGCAGTGGTCAACAGCCATTCCTTGTC...CATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCAGCTTGCGGTTCCTCTaGGCAATGAAGTACAGAGCC +
Preference number: 5 (lower is better)
Translates to: LRALECGTPFTGICGYDVSLRFL*AMKYRA
Trigger: GGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCT...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp CAGTACAGTAAAAGCCCAGACAACACAGAGGAGTCCAGGAACATAGCTGGAGGCAATGTACACTTGAGCTaGCGGTTCCTCTTGGCAATG +
Preference number: 5 (lower is better)
Translates to: QYSKSPDNTEESRNIAGGNVHLS*RFLLAM
Trigger: CATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATT...GCCTCCAGCTATGTTCCTGGACTCCTCTGTGTTGTCTGGGCTTTTACTGTACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp GAGACAGGTTATGATTCATTTGGAAATCCACGGAAGCACTCAATGAAAACCCACCTCTCACTGCTGACCTaGTCCAGGGGCTGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: ETGYDSFGNPRKHSMKTHLSLLT*SRGCGG
Trigger: TCCTCCACAGCCCCTGGACAAGGTCAGCAGTGAGAG...GTGGGTTTTCATTGAGTGCTTCCGTGGATTTCCAAATGAATCATAACCTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp ACTCTGTGTGCTTTCTACTCCCAAGAGATTAGCAGACACAGAAATCCTAAACACCTCTCACTGCTGACCTaGTCCAGGGGCTGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: TLCAFYSQEISRHRNPKHLSLLT*SRGCGG
Trigger: TCCTCCACAGCCCCTGGACAAGGTCAGCAGTGAGAG...GTGTTTAGGATTTCTGTGTCTGCTAATCTCTTGGGAGTAGAAAGCACACAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS GCA 90 bp CATTTAGCAAGACAAAGGCCACCAGGGACATCCCTCCATTCATCATaGCCACCAAGAAGCGAGTTACTGCAAAGAATTCATATGAGGGGG +
Preference number: 5 (lower is better)
Translates to: HLARQRPPGTSLHSS*PPRSELLQRIHMRG
Trigger: CCCCCTCATATGAATTCTTTGCAGTAACTCGCTTCTTGGTGGGCATGATGAATGGAGGGATGTCCCTGGTGGCCTTTGTCTTGCTAAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS-3UTR CAA 90 bp CTCCTGTTGGCCGGGTGTGTTAGTGAGAATGTACACTTGAGCTTGCGGTTCCTCATAGAGGTGAAACTGTaGCTGAAATGCACGTGCTTA +
Preference number: 5 (lower is better)
Translates to: LLLAGCVSENVHLSLRFLIEVKL*LKCTCL
Trigger: TAAGCACGTGCATTTCAGCAACAGTTTCACCTCTAT...GAGGAACCGCAAGCTCAAGTGTACATTCTCACTAACACACCCGGCCAACAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CAA 90 bp AGCAAGTTCTCCCTTTTGGAATCTCTCCTCCACCGCCTCTCCCATCTGGAAAGCATAGAGGTGAAACTGTaGCTGAAATGCACGTGCTTA +
Preference number: 5 (lower is better)
Translates to: SKFSLLESLLHRLSHLESIEVKL*LKCTCL
Trigger: TAAGCACGTGCATTTCAGCAACAGTTTCACCTCTAT...GCTTTCCAGATGGGAGAGGCGGTGGAGGAGAGATTCCAAAAGGGAGAACTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp GCATTGAGGGAACAGAGAATGGCGCTGTTTCCAGATAGGCTAGGCCTCCACTTCAGGGGGAAAATCCATTaGCGACAGCAAATAAGATGT +
Preference number: 5 (lower is better)
Translates to: ALREQRMALFPDRLGLHFRGKIH*RQQIRC
Trigger: ACATCTTATTTGCTGTCGCAAATGGATTTTCCCCCT...GAAGTGGAGGCCTAGCCTATCTGGAAACAGCGCCATTCTCTGTTCCCTCAATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183255.2
CDS-3UTR CAA 90 bp ACTCTGTGTGCTTTCTACTCCCAAGAGATTAGCAGACACAGAAATCCTAAACACCCAGGAAGCTTCCAGTaGCCCTGTAGCTCCTGTTGG +
Preference number: 5 (lower is better)
Translates to: TLCAFYSQEISRHRNPKHPGSFQ*PCSSCW
Trigger: CCAACAGGAGCTACAGGGCAACTGGAAGCTTCCTGG...GTGTTTAGGATTTCTGTGTCTGCTAATCTCTTGGGAGTAGAAAGCACACAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS CCA 90 bp TTGGCAATGAAGTACAGAGCCTCTTCCGCCTCACTCAGCCGACCCTaGGAGTATAACCAACGAGGTGATTCAGGAATGAATAAAGATAAG +
Preference number: 5 (lower is better)
Translates to: LAMKYRASSASLSRP*EYNQRGDSGMNKDK
Trigger: CTTATCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGGCTGAGTGAGGCGGAAGAGGCTCTGTACTTCATTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR CAA 90 bp AGGCAAAGAATGCAGGCTTGCACAGTTTCCAGGGGCATCTACAGAGCACCTTTCATAGAGGTGAAACTGTaGCTGAAATGCACGTGCTTA +
Preference number: 5 (lower is better)
Translates to: RQRMQACTVSRGIYRAPFIEVKL*LKCTCL
Trigger: TAAGCACGTGCATTTCAGCAACAGTTTCACCTCTAT...GAAAGGTGCTCTGTAGATGCCCCTGGAAACTGTGCAAGCCTGCATTCTTTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp GCCTCCTATGCAAATATGAGGACCTCAATTAGGATCCATGTAAAAGCTGGATGCAGCTTGCGGTTCCTCTaGGCAATGAAGTACAGAGCC +
Preference number: 5 (lower is better)
Translates to: ASYANMRTSIRIHVKAGCSLRFL*AMKYRA
Trigger: GGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCT...GCATCCAGCTTTTACATGGATCCTAATTGAGGTCCTCATATTTGCATAGGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS-3UTR CAA 90 bp CTTCGTGCTTTGGAGTGTGGGACACCCTTTACTGGAATTTGCGGATATGATGTCAGTGAGAATGTACACTaGAGCTTGCGGTTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: LRALECGTPFTGICGYDVSENVH*SLRFLL
Trigger: CAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACT...GACATCATATCCGCAAATTCCAGTAAAGGGTGTCCCACACTCCAAAGCACGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS-3UTR CAA 90 bp GCCTCCTATGCAAATATGAGGACCTCAATTAGGATCCATGTAAAAGCTGGATGCAGTGAGAATGTACACTaGAGCTTGCGGTTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: ASYANMRTSIRIHVKAGCSENVH*SLRFLL
Trigger: CAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACT...GCATCCAGCTTTTACATGGATCCTAATTGAGGTCCTCATATTTGCATAGGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS TCA 90 bp TGTAGAGATAGCGCTTCCTCTCCTAACCTCCTATATGAGTACATTTaGAGATCAGAAAATGTCTCCAGCAAAGGGCTGTTCAGAGTCTCT +
Preference number: 5 (lower is better)
Translates to: CRDSASSPNLLYEYI*RSENVSSKGLFRVS
Trigger: AGAGACTCTGAACAGCCCTTTGCTGGAGACATTTTCTGATCTTCAAATGTACTCATATAGGAGGTTAGGAGAGGAAGCGCTATCTCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS TCA 90 bp AAGAGCAAAACCTGTGAGATAGACTTTTCTCCTTCCAAATCGATCTaGAAGCTGACCAAAGGAGATAACACCAACAAACACACCACTGAA +
Preference number: 5 (lower is better)
Translates to: KSKTCEIDFSPSKSI*KLTKGDNTNKHTTE
Trigger: TTCAGTGGTGTGTTTGTTGGTGTTATCTCCTTTGGTCAGCTTTCAGATCGATTTGGAAGGAGAAAAGTCTATCTCACAGGTTTTGCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS-3UTR CAA 90 bp ACTCACCATATCTACATCACACCTCTTATTTCACTAAGGAAGCTTTTGTGGAAGAGGGGGAAAATCCATTaGCGACAGCAAATAAGATGT +
Preference number: 5 (lower is better)
Translates to: THHIYITPLISLRKLLWKRGKIH*RQQIRC
Trigger: ACATCTTATTTGCTGTCGCAAATGGATTTTCCCCCT...CTTCCACAAAAGCTTCCTTAGTGAAATAAGAGGTGTGATGTAGATATGGTGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS GCA 72 bp TGGCGGTCAGCAGCCAGTCCCCGAAGGCCTGGCCTTTaGCCAAAGTCTGGTTGCTGTGGCTCTGGTTGGGCA +
Preference number: 6 (lower is better)
Translates to: WRSAASPRRPGL*PKSGCCGSGWA
Trigger: TGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCTGCTGACCGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 72 bp CTGCCATTGGCGGTCAGCAGCCAGTCCCCGAAGGCCTaGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: LPLAVSSQSPKA*PLPKVWLLWLW
Trigger: CCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 90 bp GTCAGCAGCCAGTCCCCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTaGCTGTGGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTGG +
Preference number: 6 (lower is better)
Translates to: VSSQSPKAWPLPKVW*LWLWLGRRSAMSQW
Trigger: CCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCTGCTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 72 bp CCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTTGCTGTaGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAG +
Preference number: 6 (lower is better)
Translates to: PKAWPLPKVWLL*LWLGRRSAMSQ
Trigger: CTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 72 bp CAGTCCCCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTaGCTGTGGCTCTGGTTGGGCAGGAGATCGGCCATG +
Preference number: 6 (lower is better)
Translates to: QSPKAWPLPKVW*LWLWLGRRSAM
Trigger: CATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS GCA 72 bp AGTCCCCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTTaGTGTGGCTCTGGTTGGGCAGGAGATCGGCCATGT +
Preference number: 6 (lower is better)
Translates to: SPRRPGLCPKSG*CGSGWAGDRPC
Trigger: ACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 90 bp CCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTGGTaGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCTGGTGTAGCT +
Preference number: 6 (lower is better)
Translates to: PKAWPLPKVWLLWLW*GRRSAMSQWYAGVA
Trigger: AGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGCCTTCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS TCA 72 bp ACTGTACTTCCTTCAGGGAGGGGACGAAGGGGGCAATaGTCCCACCGACTCGGGAGAACATGGAGCACGCTC +
Preference number: 6 (lower is better)
Translates to: TVLPSGRGRRGQ*SHRLGRTWSTL
Trigger: GAGCGTGCTCCATGTTCTCCCGAGTCGGTGGGATCATTGCCCCCTTCGTCCCCTCCCTGAAGGAAGTACAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS CCA 72 bp GCCTGGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTaGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTAT +
Preference number: 6 (lower is better)
Translates to: AWPLPKVWLLWL*LGRRSAMSQWY
Trigger: ATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 72 bp TGGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTGGTaGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCT +
Preference number: 6 (lower is better)
Translates to: WPLPKVWLLWLW*GRRSAMSQWYA
Trigger: AGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCACAGCAACCAGACTTTGGGCAAAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 72 bp TTGCTGAAATGCACGTGCTTATGGATCTCACTGCCATaGGCGGTCAGCAGCCAGTCCCCGAAGGCCTGGCCT +
Preference number: 6 (lower is better)
Translates to: LLKCTCLWISLP*AVSSQSPKAWP
Trigger: AGGCCAGGCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS GCA 72 bp CTGGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATaGTGGTGTAGCTCCAATCAGTGCAATGAGGATGGC +
Preference number: 6 (lower is better)
Translates to: LVGQEIGHVPVV*WCSSNQCNEDG
Trigger: GCCATCCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS GCA 72 bp GACCACCAATCGATCCTGCAAGTGCCCAGTAGGCGGTaGCCACGCACTCATTTAGCAAGACAAAGGCCACCA +
Preference number: 6 (lower is better)
Translates to: DHQSILQVPSRR*PRTHLARQRPP
Trigger: TGGTGGCCTTTGTCTTGCTAAATGAGTGCGTGGGCACCGCCTACTGGGCACTTGCAGGATCGATTGGTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS CCA 72 bp TGGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTaGTATGCTGGTGTAGCTCCAATCAGTGCAATGAGG +
Preference number: 6 (lower is better)
Translates to: WLWLGRRSAMSQ*YAGVAPISAMR
Trigger: CCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAACCAGAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 90 bp GTGAAACTGTTGCTGAAATGCACGTGCTTATGGATCTCACTGCCATaGGCGGTCAGCAGCCAGTCCCCGAAGGCCTGGCCTTTGCCCAAA +
Preference number: 6 (lower is better)
Translates to: VKLLLKCTCLWISLP*AVSSQSPKAWPLPK
Trigger: TTTGGGCAAAGGCCAGGCCTTCGGGGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 90 bp GCCGGGTGTGTTAGTGAGAATGTACACTTGAGCTTGCGGTTCCTCTaGGCAATGAAGTACAGAGCCTCTTCCGCCTCACTCAGCCGACCC +
Preference number: 6 (lower is better)
Translates to: AGCVSENVHLSLRFL*AMKYRASSASLSRP
Trigger: GGGTCGGCTGAGTGAGGCGGAAGAGGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACTAACACACCCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS CCA 72 bp GTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCTaGTGTAGCTCCAATCAGTGCAATGAGGATGGCTTC +
Preference number: 6 (lower is better)
Translates to: VGQEIGHVPVVC*CSSNQCNEDGF
Trigger: GAAGCCATCCTCATTGCACTGATTGGAGCTACACCAGCATACCACTGGGACATGGCCGATCTCCTGCCCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CAA 90 bp TCCGCCTCACTCAGCCGACCCTCAGAGGCAATAGAGGTGAAACTGTaGCTGAAATGCACGTGCTTATGGATCTCACTGCCATTGGCGGTC +
Preference number: 6 (lower is better)
Translates to: SASLSRPSEAIEVKL*LKCTCLWISLPLAV
Trigger: GACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTCTGAGGGTCGGCTGAGTGAGGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190824.7
CDS GCA 72 bp CTCCAGGAGCGGATGAAGTACCCTAATAGGGCATACTaGGCGATGCCAACAGCGAAGAAGAGACCACCAATC +
Preference number: 6 (lower is better)
Translates to: LQERMKYPNRAY*AMPTAKKRPPI
Trigger: GATTGGTGGTCTCTTCTTCGCTGTTGGCATCGCGCAGTATGCCCTATTAGGGTACTTCATCCGCTCCTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS GCA 72 bp GAGGCAATAGAGGTGAAACTGTTGCTGAAATGCACGTaGTTATGGATCTCACTGCCATTGGCGGTCAGCAGC +
Preference number: 6 (lower is better)
Translates to: EAIEVKLLLKCT*LWISLPLAVSS
Trigger: GCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 72 bp ATAGAGGTGAAACTGTTGCTGAAATGCACGTGCTTATaGATCTCACTGCCATTGGCGGTCAGCAGCCAGTCC +
Preference number: 6 (lower is better)
Translates to: IEVKLLLKCTCL*ISLPLAVSSQS
Trigger: GGACTGGCTGCTGACCGCCAATGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
ENSMUST00000190824.7
CDS CCA 72 bp AAGTACAGAGCCTCTTCCGCCTCACTCAGCCGACCCTaGGAGTATAACCAACGAGGTGATTCAGGAATGAAT +
Preference number: 6 (lower is better)
Translates to: KYRASSASLSRP*EYNQRGDSGMN
Trigger: ATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGGCTGAGTGAGGCGGAAGAGGCTCTGTACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106928.10
CDS CAA 72 bp CTCAGCCGACCCTCAGAGGCAATAGAGGTGAAACTGTaGCTGAAATGCACGTGCTTATGGATCTCACTGCCA +
Preference number: 6 (lower is better)
Translates to: LSRPSEAIEVKL*LKCTCLWISLP
Trigger: TGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTCTGAGGGTCGGCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190824.7
CDS CAA 72 bp GTTAGTGAGAATGTACACTTGAGCTTGCGGTTCCTCTaGGCAATGAAGTACAGAGCCTCTTCCGCCTCACTC +
Preference number: 6 (lower is better)
Translates to: VSENVHLSLRFL*AMKYRASSASL
Trigger: GAGTGAGGCGGAAGAGGCTCTGTACTTCATTGCCAAGAGGAACCGCAAGCTCAAGTGTACATTCTCACTAAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS GCA 72 bp AGACAAAGGCCACCAGGGACATCCCTCCATTCATCATaGCCACCAAGAAGCGAGTTACTGCAAAGAATTCAT +
Preference number: 6 (lower is better)
Translates to: RQRPPGTSLHSS*PPRSELLQRIH
Trigger: ATGAATTCTTTGCAGTAACTCGCTTCTTGGTGGGCATGATGAATGGAGGGATGTCCCTGGTGGCCTTTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2
CDS TCA 72 bp AGCGCTTCCTCTCCTAACCTCCTATATGAGTACATTTaGAGATCAGAAAATGTCTCCAGCAAAGGGCTGTTC +
Preference number: 6 (lower is better)
Translates to: SASSPNLLYEYI*RSENVSSKGLF
Trigger: GAACAGCCCTTTGCTGGAGACATTTTCTGATCTTCAAATGTACTCATATAGGAGGTTAGGAGAGGAAGCGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000190824.7
CDS CAA 72 bp ATTAAAAACCACTCAGAGGCAATAGAGGTGAAACTGTaGCTGAAATGCACGTGCTTATGGATCTCACTGCCA +
Preference number: 6 (lower is better)
Translates to: IKNHSEAIEVKL*LKCTCLWISLP
Trigger: TGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAACAGTTTCACCTCTATTGCCTCTGAGTGGTTTTTAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106928.10
ENSMUST00000183255.2