RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC22A13B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092212

Ensembl transcript IDs: ENSMUST00000173185.2

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTaGCAAAACAGAAACCTGTCCTCTGCTCTTGATAGGCTGGCCCTC +
Preference number: 1 (lower is better)
Translates to: MPTKTPKAGLGMQLV*QNRNLSSALDRLAL
Trigger: GAGGGCCAGCCTATCAAGAGCAGAGGACAGGTTTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
3UTR TCA 90 bp TTCAGGGACAGTCTCCCCTCCTCAGTTAAACTTCTGACAACACCTTaGCAGACACCACCCAGAGATGCTCCTCCTTTAGCGATTCCCATC +
Preference number: 1 (lower is better)
Translates to: FRDSLPSSVKLLTTP*QTPPRDAPPLAIPI
Trigger: GATGGGAATCGCTAAAGGAGGAGCATCTCTGGGTGGTGTCTGTCAAGGTGTTGTCAGAAGTTTAACTGAGGAGGGGAGACTGTCCCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
3UTR-3UTR CCA 90 bp CCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGGAACTATCTCTCCTAATAACCCCTAAGAAATaGAAGAGAAAATGCCTACAA +
Preference number: 2 (lower is better)
Translates to: PVRVTMKIKHYRMELSLLITPKK*KRKCLQ
Trigger: TTGTAGGCATTTTCTCTTCCATTTCTTAGGGGTTAT...TAGGAGAGATAGTTCCATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
3UTR-3UTR CAA 90 bp AGAAAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACACCTGTCCTCTGCTCTaGATAGGCTGGCCCTCAGCA +
Preference number: 3 (lower is better)
Translates to: RKCLQRPQRQVWECSLCDTCPLL*IGWPSA
Trigger: TGCTGAGGGCCAGCCTATCAAGAGCAGAGGACAGGT...GTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
3UTR TCA 72 bp AGTCTCCCCTCCTCAGTTAAACTTCTGACAACACCTTaGCAGACACCACCCAGAGATGCTCCTCCTTTAGCG +
Preference number: 3 (lower is better)
Translates to: SLPSSVKLLTTP*QTPPRDAPPLA
Trigger: CGCTAAAGGAGGAGCATCTCTGGGTGGTGTCTGTCAAGGTGTTGTCAGAAGTTTAACTGAGGAGGGGAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
3UTR GCA 72 bp AAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATaGAGCTTGTGTGACAAAACAGAAACCTGTCCTCTG +
Preference number: 3 (lower is better)
Translates to: KCLQRPQRQVWE*SLCDKTETCPL
Trigger: CAGAGGACAGGTTTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR TCA 90 bp AGAAAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACGAGGTGGCCGGAACATaGGGCAGGACTCGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: RKCLQRPQRQVWECSLCDEVAGT*GRTRVC
Trigger: GCAGACCCGAGTCCTGCCTCATGTTCCGGCCACCTC...GTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR TCA 90 bp CAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACAAAACAGAAACCCCCCCACTTGGAAGCTaGGGCTGTAGTACACCAGAC +
Preference number: 4 (lower is better)
Translates to: QRPQRQVWECSLCDKTETPPLGS*GCSTPD
Trigger: GTCTGGTGTACTACAGCCTCAGCTTCCAAGTGGGGG...GGTTTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTG
53% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR GCA 90 bp AGAGAAAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGCGACCCTGGAGAACATaGTCACCAACCCCATGCCTG +
Preference number: 4 (lower is better)
Translates to: RENAYKDPKGRSGNAACVRPWRT*SPTPCL
Trigger: CAGGCATGGGGTTGGTGAGCATGTTCTCCAGGGTCG...CACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CCA 90 bp ATACTGCCCATGTTCAGGGACAGTCTCCCCTCCTCAGTTAAACTTCTGACAACAGTGTCCTTCAGGGTCTaGCCCCGGGACTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: ILPMFRDSLPSSVKLLTTVSFRV*PRDSGR
Trigger: TCTTCCTGAGTCCCGGGGCCAGACCCTGAAGGACAC...TGTTGTCAGAAGTTTAACTGAGGAGGGGAGACTGTCCCTGAACATGGGCAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CCA 90 bp GGCAGGTCTGGGAATGCAGCTTGTGTGACAAAACAGAAACCTGTCCTCTGCTCTCAGCCACCCTCACACTaGAAGTTCTTCCCGAAGCCT +
Preference number: 4 (lower is better)
Translates to: GRSGNAACVTKQKPVLCSQPPSH*KFFPKP
Trigger: AGGCTTCGGGAAGAACTTCCAGTGTGAGGGTGGCTG...AGAGCAGAGGACAGGTTTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR TCA 90 bp AATAGGATACTGCCCATGTTCAGGGACAGTCTCCCCTCCTCAGTTAAACTTCTGAGGATAGTCCCAGCCTaGGTCACAGGCCTGTGTCTC +
Preference number: 4 (lower is better)
Translates to: NRILPMFRDSLPSSVKLLRIVPA*VTGLCL
Trigger: GAGACACAGGCCTGTGACTCAGGCTGGGACTATCCT...CAGAAGTTTAACTGAGGAGGGGAGACTGTCCCTGAACATGGGCAGTATCCTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR TCA 90 bp AAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACAAAACACATAGGAGATGGTaGAGGCCGCAGCCGAGGCAA +
Preference number: 4 (lower is better)
Translates to: KCLQRPQRQVWECSLCDKTHRRW*RPQPRQ
Trigger: TTGCCTCGGCTGCGGCCTTCACCATCTCCTATGTGT...TTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR GCA 90 bp CCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACAAAACAGAAACCTGTCCTTCAGGAAATTGGGAATaGCCATCAGGATGGTCAACC +
Preference number: 4 (lower is better)
Translates to: PQRQVWECSLCDKTETCPSGNWE*PSGWST
Trigger: GGTTGACCATCCTGATGGGCATTCCCAATTTCCTGA...AGGACAGGTTTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
3UTR CAA 72 bp CTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTaGTGTGACAAAACAGAAACCTGTCCTCTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: LQRPQRQVWECS*CDKTETCPLLL
Trigger: CAAGAGCAGAGGACAGGTTTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR TCA 90 bp TTTAGCGATTCCCATCCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGGGAGGCTGCCAAAGATaGCCATGGGAATCGCCTGGT +
Preference number: 4 (lower is better)
Translates to: FSDSHPVRVTMKIKHYRMGGCQR*PWESPG
Trigger: ACCAGGCGATTCCCATGGTCATCTTTGGCAGCCTCC...CATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGGATGGGAATCGCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CCA 90 bp AGAAAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACAGGACCATGAAGACCTaGCCAAATATGAAGAATGCA +
Preference number: 4 (lower is better)
Translates to: RKCLQRPQRQVWECSLCDRTMKT*PNMKNA
Trigger: TGCATTCTTCATATTTGGCCAGGTCTTCATGGTCCT...GTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR GCA 90 bp AAATGCCTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACAAAGCCAAATATGAAGAATaGAGTCAGGAAATTGGGAAT +
Preference number: 4 (lower is better)
Translates to: KCLQRPQRQVWECSLCDKAKYEE*SQEIGN
Trigger: ATTCCCAATTTCCTGACTGCATTCTTCATATTTGGC...TTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAGGCATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CCA 90 bp TTTAGCGATTCCCATCCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGATGCAGTCAGGAAATTaGGAATGCCCATCAGGATGG +
Preference number: 4 (lower is better)
Translates to: FSDSHPVRVTMKIKHYRMMQSGN*ECPSGW
Trigger: CCATCCTGATGGGCATTCCCAATTTCCTGACTGCAT...CATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGGATGGGAATCGCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR TCA 90 bp TTTAGCGATTCCCATCCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGAGACCTGGCCAAATATaGAGAATGCAGTCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: FSDSHPVRVTMKIKHYRMRPGQI*RMQSGN
Trigger: ATTTCCTGACTGCATTCTTCATATTTGGCCAGGTCT...CATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGGATGGGAATCGCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CCA 90 bp GCAGGGAGCCCCTGCTCCAGGTCCTGGAGGGTGTCCTTCAGGGTCTaGCCCCGGGACTCAGGAAGAAGAGCGCACAGTAGGCCTGCTCCA +
Preference number: 5 (lower is better)
Translates to: AGSPCSRSWRVSFRV*PRDSGRRAHSRPAP
Trigger: TGGAGCAGGCCTACTGTGCGCTCTTCTTCCTGAGTCCCGGGGCCAGACCCTGAAGGACACCCTCCAGGACCTGGAGCAGGGGCTCCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CCA 90 bp GAAGCGGTGGCTCAGGATGTCTTCCAGGCTGGCACTGTCAGGAGGTaGCCGGAACATGAGGCAGGACTCGGGTCTGCCCGCTGTGTCGTT +
Preference number: 5 (lower is better)
Translates to: EAVAQDVFQAGTVRR*PEHEAGLGSARCVV
Trigger: AACGACACAGCGGGCAGACCCGAGTCCTGCCTCATGTTCCGGCCACCTCCTGACAGTGCCAGCCTGGAAGACATCCTGAGCCACCGCTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CCA 90 bp GCTCCAATGGGGAGGCTGCCAAAGATGACCATGGGAATCGCCTGGTaGTACTGTTCCAGCAGCATCACAAGGGGTGTGATGATGCCACCG +
Preference number: 5 (lower is better)
Translates to: APMGRLPKMTMGIAW*YCSSSITRGVMMPP
Trigger: CGGTGGCATCATCACACCCCTTGTGATGCTGCTGGAACAGTACCACCAGGCGATTCCCATGGTCATCTTTGGCAGCCTCCCCATTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS GCA 90 bp GACTCGGGTCTGCCCGCTGTGTCGTTGGGGATGCTTATAGCCAGCTaGTCAGCGGCACTTAGGTTGAAAGTGTGGTTCTTAACCCAGGAC +
Preference number: 5 (lower is better)
Translates to: DSGLPAVSLGMLIAS*SAALRLKVWFLTQD
Trigger: GTCCTGGGTTAAGAACCACACTTTCAACCTAAGTGCCGCTGAGCAGCTGGCTATAAGCATCCCCAACGACACAGCGGGCAGACCCGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS TCA 90 bp GCAGTCAGGAAATTGGGAATGCCCATCAGGATGGTCAACCGCACCTaGAAGCGACCAAAGTCGCCCACTTCAGCCATGACCTGTGCAAAT +
Preference number: 5 (lower is better)
Translates to: AVRKLGMPIRMVNRT*KRPKSPTSAMTCAN
Trigger: ATTTGCACAGGTCATGGCTGAAGTGGGCGACTTTGGTCGCTTTCAGGTGCGGTTGACCATCCTGATGGGCATTCCCAATTTCCTGACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS TCA 90 bp CACAGACAGGCCCAAAGACCAGGGCTCCAACAAGAAGTCCAGCCATaGACACCGACTGAGAGGTCCTCTTCAGGTTCTTTCAATCACACA +
Preference number: 5 (lower is better)
Translates to: HRQAQRPGLQQEVQP*TPTERSSSGSFNHT
Trigger: TGTGTGATTGAAAGAACCTGAAGAGGACCTCTCAGTCGGTGTTCATGGCTGGACTTCTTGTTGGAGCCCTGGTCTTTGGGCCTGTCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS TCA 90 bp CCAAAGACCAGGGCTCCAACAAGAAGTCCAGCCATGAACACCGACTaGGAGGTCCTCTTCAGGTTCTTTCAATCACACACCAGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: PKTRAPTRSPAMNTD*EVLFRFFQSHTRSN
Trigger: GTTTGACCTGGTGTGTGATTGAAAGAACCTGAAGAGGACCTCTCAGTCGGTGTTCATGGCTGGACTTCTTGTTGGAGCCCTGGTCTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS GCA 90 bp GTGAGCCTCGTCAAGGACCATGAAGACCTGGCCAAATATGAAGAATaGAGTCAGGAAATTGGGAATGCCCATCAGGATGGTCAACCGCAC +
Preference number: 5 (lower is better)
Translates to: VSLVKDHEDLAKYEE*SQEIGNAHQDGQPH
Trigger: GTGCGGTTGACCATCCTGATGGGCATTCCCAATTTCCTGACTGCATTCTTCATATTTGGCCAGGTCTTCATGGTCCTTGACGAGGCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CAA 90 bp ATACTGCCCATGTTCAGGGACAGTCTCCCCTCCTCAGTTAAACTTCTGACAACAGCCAAAGTCCCCCACTaGGAAGCTGAGGCTGTAGTA +
Preference number: 5 (lower is better)
Translates to: ILPMFRDSLPSSVKLLTTAKVPH*EAEAVV
Trigger: TACTACAGCCTCAGCTTCCAAGTGGGGGACTTTGGC...TGTTGTCAGAAGTTTAACTGAGGAGGGGAGACTGTCCCTGAACATGGGCAGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CAA 90 bp CTACAAAGACCCCAAAGGCAGGTCTGGGAATGCAGCTTGTGTGACAAAACAGAATCAGCGGCACTTAGGTaGAAAGTGTGGTTCTTAACC +
Preference number: 5 (lower is better)
Translates to: LQRPQRQVWECSLCDKTESAALR*KVWFLT
Trigger: GGTTAAGAACCACACTTTCAACCTAAGTGCCGCTGA...TTCTGTTTTGTCACACAAGCTGCATTCCCAGACCTGCCTTTGGGGTCTTTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CAA 90 bp TTTAGCGATTCCCATCCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGCAGGCCTGTGTCTCATaGAAGCGGTGGCTCAGGATG +
Preference number: 5 (lower is better)
Translates to: FSDSHPVRVTMKIKHYRMQACVS*KRWLRM
Trigger: CATCCTGAGCCACCGCTTCAATGAGACACAGGCCTG...CATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGGATGGGAATCGCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CAA 90 bp CCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGGAACTATCTCTCCTACGAAGCCTCCATGTCTaGTCTTTGGGGTGCTGTTTT +
Preference number: 5 (lower is better)
Translates to: PVRVTMKIKHYRMELSLLRSLHV*SLGCCF
Trigger: AAAACAGCACCCCAAAGACAAGACATGGAGGCTTCG...TAGGAGAGATAGTTCCATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS-3UTR CAA 90 bp TTTAGCGATTCCCATCCGGTCAGGGTGACAATGAAAATTAAGCATTACAGAATGAATGCAGTCAGGAAATaGGGAATGCCCATCAGGATG +
Preference number: 5 (lower is better)
Translates to: FSDSHPVRVTMKIKHYRMNAVRK*GMPIRM
Trigger: CATCCTGATGGGCATTCCCAATTTCCTGACTGCATT...CATTCTGTAATGCTTAATTTTCATTGTCACCCTGACCGGATGGGAATCGCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CCA 72 bp CCCTGCTCCAGGTCCTGGAGGGTGTCCTTCAGGGTCTaGCCCCGGGACTCAGGAAGAAGAGCGCACAGTAGG +
Preference number: 6 (lower is better)
Translates to: PCSRSWRVSFRV*PRDSGRRAHSR
Trigger: CCTACTGTGCGCTCTTCTTCCTGAGTCCCGGGGCCAGACCCTGAAGGACACCCTCCAGGACCTGGAGCAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CAA 90 bp GGTGGCCGGAACATGAGGCAGGACTCGGGTCTGCCCGCTGTGTCGTaGGGGATGCTTATAGCCAGCTGCTCAGCGGCACTTAGGTTGAAA +
Preference number: 6 (lower is better)
Translates to: GGRNMRQDSGLPAVS*GMLIASCSAALRLK
Trigger: TTTCAACCTAAGTGCCGCTGAGCAGCTGGCTATAAGCATCCCCAACGACACAGCGGGCAGACCCGAGTCCTGCCTCATGTTCCGGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CAA 72 bp ACTGGAAGTTCTTCCCGAAGCCTCCATGTCTTGTCTTaGGGGTGCTGTTTTGTGGGACCCTGCAGGGAGCCC +
Preference number: 6 (lower is better)
Translates to: TGSSSRSLHVLS*GCCFVGPCREP
Trigger: GGGCTCCCTGCAGGGTCCCACAAAACAGCACCCCAAAGACAAGACATGGAGGCTTCGGGAAGAACTTCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CAA 90 bp ATGTACATGATGCCAGCCAGAGTCAGAGTACACAGCTGGCTCCACTaGCGACCCAGCTTCTCCATCATGAGGACACTGAGGAAGCGGCCA +
Preference number: 6 (lower is better)
Translates to: MYMMPARVRVHSWLH*RPSFSIMRTLRKRP
Trigger: TGGCCGCTTCCTCAGTGTCCTCATGATGGAGAAGCTGGGTCGCAAGTGGAGCCAGCTGTGTACTCTGACTCTGGCTGGCATCATGTACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS TCA 72 bp GCCCAAAGACCAGGGCTCCAACAAGAAGTCCAGCCATaGACACCGACTGAGAGGTCCTCTTCAGGTTCTTTC +
Preference number: 6 (lower is better)
Translates to: AQRPGLQQEVQP*TPTERSSSGSF
Trigger: GAAAGAACCTGAAGAGGACCTCTCAGTCGGTGTTCATGGCTGGACTTCTTGTTGGAGCCCTGGTCTTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS GCA 72 bp CTGCCCGCTGTGTCGTTGGGGATGCTTATAGCCAGCTaGTCAGCGGCACTTAGGTTGAAAGTGTGGTTCTTA +
Preference number: 6 (lower is better)
Translates to: LPAVSLGMLIAS*SAALRLKVWFL
Trigger: TAAGAACCACACTTTCAACCTAAGTGCCGCTGAGCAGCTGGCTATAAGCATCCCCAACGACACAGCGGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS TCA 72 bp AGGGCTCCAACAAGAAGTCCAGCCATGAACACCGACTaGGAGGTCCTCTTCAGGTTCTTTCAATCACACACC +
Preference number: 6 (lower is better)
Translates to: RAPTRSPAMNTD*EVLFRFFQSHT
Trigger: GGTGTGTGATTGAAAGAACCTGAAGAGGACCTCTCAGTCGGTGTTCATGGCTGGACTTCTTGTTGGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS TCA 72 bp CATAGATATCCAGGCCAAAGTCCCCCACTTGGAAGCTaGGGCTGTAGTACACCAGACTGTCCACAAACCAGT +
Preference number: 6 (lower is better)
Translates to: HRYPGQSPPLGS*GCSTPDCPQTS
Trigger: ACTGGTTTGTGGACAGTCTGGTGTACTACAGCCTCAGCTTCCAAGTGGGGGACTTTGGCCTGGATATCTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS GCA 72 bp CATGAGGACACTGAGGAAGCGGCCAGGCATTTCCACTaGTCCAAATATCAGCTGTGTCACATAGATATCCAG +
Preference number: 6 (lower is better)
Translates to: HEDTEEAARHFH*SKYQLCHIDIQ
Trigger: CTGGATATCTATGTGACACAGCTGATATTTGGAGCAGTGGAAATGCCTGGCCGCTTCCTCAGTGTCCTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2
CDS CAA 90 bp AAATATCAGCTGTGTCACATAGATATCCAGGCCAAAGTCCCCCACTaGGAAGCTGAGGCTGTAGTACACCAGACTGTCCACAAACCAGTC +
Preference number: 6 (lower is better)
Translates to: KYQLCHIDIQAKVPH*EAEAVVHQTVHKPV
Trigger: GACTGGTTTGTGGACAGTCTGGTGTACTACAGCCTCAGCTTCCAAGTGGGGGACTTTGGCCTGGATATCTATGTGACACAGCTGATATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173185.2