Pregenerated sensors for SLC1A5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001918Ensembl transcript IDs: ENSMUST00000108496.9
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGTGTTTTCTGTCATGGAGGGACTACTGGGAAGGTCACAGCAAGTaGACACACACCACAGATAGGGACATTAAGATAGTATTGCATCCC | + |
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Preference number: 1 (lower is better) Translates to: ECFLSWRDYWEGHSK*THTTDRDIKIVLHP Trigger: GGGATGCAATACTATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| 3UTR-3UTR TCA 90 bp | GACTCATGGGAGTGTTTTCTGTCATGGAGGGACTACTGGGAAGGTCACAGCAAGGAGAATGTCATTCCTTaGATGGGGGACAGAACGGAG | + |
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Preference number: 2 (lower is better) Translates to: DSWECFLSWRDYWEGHSKENVIP*MGDRTE Trigger: CTCCGTTCTGTCCCCCATTCAAGGAATGACATTCTC...CTTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACACTCCCATGAGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| 3UTR-3UTR TCA 90 bp | ATGTGTTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGGGACAACCCATTTCCTaGGAGGGTAGGCCAGATGGC | + |
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Preference number: 2 (lower is better) Translates to: MCSGVTFILGFPSRLMGVGQPIS*EGRPDG Trigger: GCCATCTGGCCTACCCTCTCAGGAAATGGGTTGTCC...CACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAACACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| 3UTR-3UTR CCA 90 bp | GACTCATGGGAGTGTTTTCTGTCATGGAGGGACTACTGGGAAGGTCACAGCAAGAGAACGGAGAGGGGGTaGGATTTGTGGACACATTCA | + |
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Preference number: 2 (lower is better) Translates to: DSWECFLSWRDYWEGHSKRTERG*DLWTHS Trigger: TGAATGTGTCCACAAATCCCACCCCCTCTCCGTTCT...CTTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACACTCCCATGAGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| 3UTR-3UTR TCA 90 bp | ATGTGTTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGATGGCTCTGGGTGACTaGGAATGTCATTCCTTGAAT | + |
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Preference number: 2 (lower is better) Translates to: MCSGVTFILGFPSRLMGVMALGD*ECHSLN Trigger: ATTCAAGGAATGACATTCTCAGTCACCCAGAGCCAT...CACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAACACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| 3UTR CCA 72 bp | GACTCATGGGAGTGTTTTCTGTCATGGAGGGACTACTaGGAAGGTCACAGCAAGTGCACACACACCACAGAT | + |
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Preference number: 3 (lower is better) Translates to: DSWECFLSWRDY*EGHSKCTHTTD Trigger: ATCTGTGGTGTGTGTGCACTTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACACTCCCATGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| 3UTR-3UTR CAA 90 bp | TTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGTTTTCGAGAGGGGGTGGGATTaGTGGACACATTCACATATA | + |
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Preference number: 3 (lower is better) Translates to: FWSDIYSWLSLETHGSVFERGWD*WTHSHI Trigger: TATATGTGAATGTGTCCACAAATCCCACCCCCTCTC...GAAAACACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR GCA 90 bp | TGTTTTCTGTCATGGAGGGACTACTGGGAAGGTCACAGCAAGTGCACACACACCGCAGGTTGGCGCGAATaGAGCGGCGCACCCGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: CFLSWRDYWEGHSKCTHTAGWRE*SGAPGH Trigger: GTGACCGGGTGCGCCGCTGCATTCGCGCCAACCTGC...GGTGTGTGTGCACTTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | TGGGAGTGTTTTCTGTCATGGAGGGACTACTGGGAAGGTCACAGCAAGTGCACAAGAACCAGGAGCCCGTaGATGGCGTGGCCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: WECFLSWRDYWEGHSKCTRTRSP*MAWPSR Trigger: CCTGCTGGGCCACGCCATCCACGGGCTCCTGGTTCT...TGTGCACTTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACACTCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | TGTCATTCCTTGAATGGGGGACAGAACGGAGAGGGGGTGGGATTTGTGGACACATCCCCGGTGGGTCCCTaGTACTGTTTCAGGAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: CHSLNGGQNGEGVGFVDTSPVGP*YCFRRG Trigger: TCCCCTCCTGAAACAGTACCAGGGACCCACCGGGGA...TGTGTCCACAAATCCCACCCCCTCTCCGTTCTGTCCCCCATTCAAGGAATGACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | GAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATAGTATTGCCAGGAGCCCGTGGATaGCGTGGCCCAGCAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EGHSKCTHTTDRDIKIVLPGARG*RGPAGS Trigger: GCTGCCTGCTGGGCCACGCCATCCACGGGCTCCTGG...CAATACTATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | GGCTTTCCCTCGAGACTCATGGGAGTGTTTTCTGTCATGGAGGGACTACTGGGAGATTCCCCTCCTCTGTaGCGAGGGGCAGTGGATTCA | + |
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Preference number: 4 (lower is better) Translates to: GFPSRLMGVFSVMEGLLGDSPPL*RGAVDS Trigger: TGAATCCACTGCCCCTCGCCACAGAGGAGGGGAATC...TCCCAGTAGTCCCTCCATGACAGAAAACACTCCCATGAGTCTCGAGGGAAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR GCA 90 bp | AGACTCATGGGAGTGTTTTCTGTCATGGAGGGACTACTGGGAAGGTCACAGCAAAGGGTCCAAGCTGGCTaGACCTCCGATCAGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: RLMGVFSVMEGLLGRSQQRVQAG*TSDQAA Trigger: TGCAGCCTGATCGGAGGTGCAGCCAGCTTGGACCCT...TTGCTGTGACCTTCCCAGTAGTCCCTCCATGACAGAAAACACTCCCATGAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR GCA 90 bp | TGTCATTCCTTGAATGGGGGACAGAACGGAGAGGGGGTGGGATTTGTGGACACACTTTGGTTGGTGCACTaGGGGCACAGGGGTCTACAA | + |
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Preference number: 4 (lower is better) Translates to: CHSLNGGQNGEGVGFVDTLWLVH*GHRGLQ Trigger: TTGTAGACCCCTGTGCCCGCAGTGCACCAACCAAAG...TGTGTCCACAAATCCCACCCCCTCTCCGTTCTGTCCCCCATTCAAGGAATGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR GCA 90 bp | AAGCATATGCACCCCAGCAACAAGGCTCCTAATAGCCTCTCCAGGAAGGAGACACACAGGCAGGCTGACTaGTTCCAGGATGATGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: KHMHPSNKAPNSLSRKETHRQAD*FQDDGE Trigger: CTCGCCATCATCCTGGAAGCAGTCAGCCTGCCTGTG...TGTCTCCTTCCTGGAGAGGCTATTAGGAGCCTTGTTGCTGGGGTGCATATGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | TACTGGGAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATAGCAGCACCAGCAGGTTaGCGCGAATGCAGCGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: YWEGHSKCTHTTDRDIKIAAPAG*RECSGA Trigger: TGCGCCGCTGCATTCGCGCCAACCTGCTGGTGCTGC...TATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTCCCAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | GAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATAGTATTGAGCCCGTGGATGGCGTaGCCCAGCAGGCAGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: EGHSKCTHTTDRDIKIVLSPWMA*PSRQHR Trigger: TCTGTGCTGCCTGCTGGGCCACGCCATCCACGGGCT...CAATACTATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR GCA 90 bp | ACATATAAGCATATGCACCCCAGCAACAAGGCTCCTAATAGCCTCTCCAGGAAGCGCACCGACACTGGATaGTGTGGCTGTGACCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: TYKHMHPSNKAPNSLSRKRTDTG*CGCDQD Trigger: ATCCTGGTCACAGCCACAGCATCCAGTGTCGGTGCG...CTTCCTGGAGAGGCTATTAGGAGCCTTGTTGCTGGGGTGCATATGCTTATATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | GAGGGGGTGGGATTTGTGGACACATTCACATATAAGCATATGCACCCCAGCAACTGTGGCGAGGGGCAGTaGATTCAGAGACACCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: EGVGFVDTFTYKHMHPSNCGEGQ*IQRHLV Trigger: AACGAGGTGTCTCTGAATCCACTGCCCCTCGCCACA...GTTGCTGGGGTGCATATGCTTATATGTGAATGTGTCCACAAATCCCACCCCCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR TCA 90 bp | TACTGGGAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATATGGCCAGGGGTGTCATaGTGCCCCACAGGAATCGAT | + |
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Preference number: 4 (lower is better) Translates to: YWEGHSKCTHTTDRDIKIWPGVS*CPTGID Trigger: ATCGATTCCTGTGGGGCATCATGACACCCCTGGCCA...TATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTCCCAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR GCA 90 bp | AAGCATATGCACCCCAGCAACAAGGCTCCTAATAGCCTCTCCAGGAAGGAGACATCATCTCCACAATCTTaGTGGCCACCAGGAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: KHMHPSNKAPNSLSRKETSSPQS*WPPGTG Trigger: TCCTGTTCCTGGTGGCCAGCAAGATTGTGGAGATGA...TGTCTCCTTCCTGGAGAGGCTATTAGGAGCCTTGTTGCTGGGGTGCATATGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR TCA 90 bp | TTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGTTTTCACGCGAGCAGTGTGGTaGCCAGGAAAAAGAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: FWSDIYSWLSLETHGSVFTRAVW*PGKRAA Trigger: CGCTGCTCTTTTTCCTGGTCACCACACTGCTCGCGT...GAAAACACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR TCA 90 bp | TACTGGGAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATAAAGCTGGACCATGGTTaGATTGATCTCCCGCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: YWEGHSKCTHTTDRDIKIKLDHG*IDLPLD Trigger: ATCCAGCGGGAGATCAATTCAACCATGGTCCAGCTT...TATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTCCCAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR TCA 90 bp | TTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGTTTTCCATCACCTTCCACGTTaGGGACAGTACAGGACCTGT | + |
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Preference number: 4 (lower is better) Translates to: FWSDIYSWLSLETHGSVFHHLPR*GQYRTC Trigger: ACAGGTCCTGTACTGTCCTCAACGTGGAAGGTGATG...GAAAACACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | ATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGTTTTCTGTCATGGAGGGACCTCGTTCTTCACCTaGATCAATTCGGGCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: IYSWLSLETHGSVFCHGGTSFFT*INSGSE Trigger: CTCAGAGCCCGAATTGATCCAGGTGAAGAACGAGGT...CCCTCCATGACAGAAAACACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CCA 90 bp | GAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATAGTATTGCAGCAGACACCAGATTaGAGGGGAAAATATTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: EGHSKCTHTTDRDIKIVLQQTPD*RGKYSS Trigger: TGAGGAATATTTTCCCCTCCAATCTGGTGTCTGCTG...CAATACTATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS TCA 90 bp | GCGCCAGGGCCAAACCCACGCCGAGCGCCGACGCGAGCAGTGTGGTaGCCAGGAAAAAGAGCAGCGCCCAGGCGCCCACACGACCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: APGPNPRRAPTRAVW*PGKRAAPRRPHDRA Trigger: CGCTCGGTCGTGTGGGCGCCTGGGCGCTGCTCTTTTTCCTGGTCACCACACTGCTCGCGTCGGCGCTCGGCGTGGGTTTGGCCCTGGCGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 90 bp | GCGAATGCAGCGGCGCACCCGGTCACGGGAACCGCAGCAACCACCTaGTTTCGCACTCTGGTCCTCTCTGGATCCCAGCGCGGGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: ANAAAHPVTGTAATT*FRTLVLSGSQRGAT Trigger: GGTGGCCCCGCGCTGGGATCCAGAGAGGACCAGAGTGCGAAAGCAGGTGGTTGCTGCGGTTCCCGTGACCGGGTGCGCCGCTGCATTCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CCA 90 bp | CGCACCCGGTCACGGGAACCGCAGCAACCACCTGCTTTCGCACTCTaGTCCTCTCTGGATCCCAGCGCGGGGCCACCGTTCGCGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: RTRSREPQQPPAFAL*SSLDPSAGPPFAVE Trigger: TTCCACCGCGAACGGTGGCCCCGCGCTGGGATCCAGAGAGGACCAGAGTGCGAAAGCAGGTGGTTGCTGCGGTTCCCGTGACCGGGTGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CCA 90 bp | CACGGGAACCGCAGCAACCACCTGCTTTCGCACTCTGGTCCTCTCTaGATCCCAGCGCGGGGCCACCGTTCGCGGTGGAATCCACCGCTA | + |
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Preference number: 5 (lower is better) Translates to: HGNRSNHLLSHSGPL*IPARGHRSRWNPPL Trigger: TAGCGGTGGATTCCACCGCGAACGGTGGCCCCGCGCTGGGATCCAGAGAGGACCAGAGTGCGAAAGCAGGTGGTTGCTGCGGTTCCCGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 90 bp | TTCCAGGATGATGGCGAGGGTGAGGACGCCCCCTGCAGGGATCCCTaGCGCACCGACACTGGATGCTGTGGCTGTGACCAGGATGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: FQDDGEGEDAPCRDP*RTDTGCCGCDQDGD Trigger: ATCACCATCCTGGTCACAGCCACAGCATCCAGTGTCGGTGCGGCAGGGATCCCTGCAGGGGGCGTCCTCACCCTCGCCATCATCCTGGAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 90 bp | GGTGAGGACGCCCCCTGCAGGGATCCCTGCCGCACCGACACTGGATaGTGTGGCTGTGACCAGGATGGTGATGATCTTCACGAAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: GEDAPCRDPCRTDTG*CGCDQDGDDLHEVQ Trigger: CTGGACTTCGTGAAGATCATCACCATCCTGGTCACAGCCACAGCATCCAGTGTCGGTGCGGCAGGGATCCCTGCAGGGGGCGTCCTCACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 90 bp | GTCCACGGCCAAGATCAAGGAGATGTCCTTCACAGGCAGGCTGACTaGTTCCAGGATGATGGCGAGGGTGAGGACGCCCCCTGCAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: VHGQDQGDVLHRQAD*FQDDGEGEDAPCRD Trigger: ATCCCTGCAGGGGGCGTCCTCACCCTCGCCATCATCCTGGAAGCAGTCAGCCTGCCTGTGAAGGACATCTCCTTGATCTTGGCCGTGGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | AAGCATATGCACCCCAGCAACAAGGCTCCTAATAGCCTCTCCAGGAAGGAGACAAACCGGCTGATGTGTTaGGCCACACCATTCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: KHMHPSNKAPNSLSRKETNRLMC*ATPFFS Trigger: GGAGAAGAATGGTGTGGCCAAACACATCAGCCGGTT...TGTCTCCTTCCTGGAGAGGCTATTAGGAGCCTTGTTGCTGGGGTGCATATGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | ATAAGCATATGCACCCCAGCAACAAGGCTCCTAATAGCCTCTCCAGGAAGGAGAGCAGCAGACACCAGATaGGAGGGGAAAATATTCCTC | + |
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Preference number: 5 (lower is better) Translates to: ISICTPATRLLIASPGRRAADTR*EGKIFL Trigger: GAGGAATATTTTCCCCTCCAATCTGGTGTCTGCTGC...TCTCCTTCCTGGAGAGGCTATTAGGAGCCTTGTTGCTGGGGTGCATATGCTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | TACTGGGAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATATTCATCTCCACAATCTaGCTGGCCACCAGGAACAGG | + |
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Preference number: 5 (lower is better) Translates to: YWEGHSKCTHTTDRDIKIFISTI*LATRNR Trigger: CCTGTTCCTGGTGGCCAGCAAGATTGTGGAGATGAA...TATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTCCCAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | GAAGGTCACAGCAAGTGCACACACACCACAGATAGGGACATTAAGATAGTATTGGCATCACCTTCCACGTaGAGGACAGTACAGGACCTG | + |
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Preference number: 5 (lower is better) Translates to: EGHSKCTHTTDRDIKIVLASPST*RTVQDL Trigger: CAGGTCCTGTACTGTCCTCAACGTGGAAGGTGATGC...CAATACTATCTTAATGTCCCTATCTGTGGTGTGTGTGCACTTGCTGTGACCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | AAGCATATGCACCCCAGCAACAAGGCTCCTAATAGCCTCTCCAGGAAGGAGACAGGTATTTTACATGAGTaGTCTTTGGGTTCATATGAG | + |
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Preference number: 5 (lower is better) Translates to: KHMHPSNKAPNSLSRKETGILHE*SLGSYE Trigger: CTCATATGAACCCAAAGACAACTCATGTAAAATACC...TGTCTCCTTCCTGGAGAGGCTATTAGGAGCCTTGTTGCTGGGGTGCATATGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | TTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGTTTTCGCATCATTGAAGGAGTaGAAGAAACGAATGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: FWSDIYSWLSLETHGSVFASLKE*KKRMSS Trigger: GCTGCTCATTCGTTTCTTCAACTCCTTCAATGATGC...GAAAACACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS-3UTR CAA 90 bp | TTCTGGAGTGACATTTATTCTTGGCTTTCCCTCGAGACTCATGGGAGTGTTTTCACCATGGTGGCATCATaGAAGGAGTTGAAGAAACGA | + |
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Preference number: 5 (lower is better) Translates to: FWSDIYSWLSLETHGSVFTMVAS*KELKKR Trigger: TCGTTTCTTCAACTCCTTCAATGATGCCACCATGGT...GAAAACACTCCCATGAGTCTCGAGGGAAAGCCAAGAATAAATGTCACTCCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CAA 90 bp | CCCACGCCAGCCACCACCGCAGCCACCGTGAGCAGCACCAGCAGGTaGGCGCGAATGCAGCGGCGCACCCGGTCACGGGAACCGCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: PTPATTAATVSSTSR*ARMQRRTRSREPQQ Trigger: TTGCTGCGGTTCCCGTGACCGGGTGCGCCGCTGCATTCGCGCCAACCTGCTGGTGCTGCTCACGGTGGCTGCGGTGGTGGCTGGCGTGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS TCA 72 bp | CCAAACCCACGCCGAGCGCCGACGCGAGCAGTGTGGTaGCCAGGAAAAAGAGCAGCGCCCAGGCGCCCACAC | + |
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Preference number: 6 (lower is better) Translates to: PNPRRAPTRAVW*PGKRAAPRRPH Trigger: GTGTGGGCGCCTGGGCGCTGCTCTTTTTCCTGGTCACCACACTGCTCGCGTCGGCGCTCGGCGTGGGTTTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 72 bp | GCGGCGCACCCGGTCACGGGAACCGCAGCAACCACCTaGTTTCGCACTCTGGTCCTCTCTGGATCCCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: AAHPVTGTAATT*FRTLVLSGSQR Trigger: GCGCTGGGATCCAGAGAGGACCAGAGTGCGAAAGCAGGTGGTTGCTGCGGTTCCCGTGACCGGGTGCGCCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 72 bp | GATGGCGAGGGTGAGGACGCCCCCTGCAGGGATCCCTaGCGCACCGACACTGGATGCTGTGGCTGTGACCAG | + |
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Preference number: 6 (lower is better) Translates to: DGEGEDAPCRDP*RTDTGCCGCDQ Trigger: CTGGTCACAGCCACAGCATCCAGTGTCGGTGCGGCAGGGATCCCTGCAGGGGGCGTCCTCACCCTCGCCATC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 72 bp | TGCTTCCAGGATGATGGCGAGGGTGAGGACGCCCCCTaGAGGGATCCCTGCCGCACCGACACTGGATGCTGT | + |
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Preference number: 6 (lower is better) Translates to: CFQDDGEGEDAP*RDPCRTDTGCC Trigger: ACAGCATCCAGTGTCGGTGCGGCAGGGATCCCTGCAGGGGGCGTCCTCACCCTCGCCATCATCCTGGAAGCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CCA 72 bp | TCACGGGAACCGCAGCAACCACCTGCTTTCGCACTCTaGTCCTCTCTGGATCCCAGCGCGGGGCCACCGTTC | + |
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Preference number: 6 (lower is better) Translates to: SREPQQPPAFAL*SSLDPSAGPPF Trigger: GAACGGTGGCCCCGCGCTGGGATCCAGAGAGGACCAGAGTGCGAAAGCAGGTGGTTGCTGCGGTTCCCGTGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 72 bp | GCCCCCTGCAGGGATCCCTGCCGCACCGACACTGGATaGTGTGGCTGTGACCAGGATGGTGATGATCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: APCRDPCRTDTG*CGCDQDGDDLH Trigger: GTGAAGATCATCACCATCCTGGTCACAGCCACAGCATCCAGTGTCGGTGCGGCAGGGATCCCTGCAGGGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS TCA 72 bp | TCACGAAGTCCAGGGACACCCCGTTTAGTTGTGCGATaGACACTGCCGCCACACACTGGAACAGCGCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: SRSPGTPRLVVR*TLPPHTGTAPP Trigger: GGGCGGCGCTGTTCCAGTGTGTGGCGGCAGTGTTCATCGCACAACTAAACGGGGTGTCCCTGGACTTCGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CAA 72 bp | GTGGCGCCGATGGGTAGGATGAACCGGCTGATGTGTTaGGCCACACCATTCTTCTCCTCTACACACTTCATC | + |
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Preference number: 6 (lower is better) Translates to: VAPMGRMNRLMC*ATPFFSSTHFI Trigger: GATGAAGTGTGTAGAGGAGAAGAATGGTGTGGCCAAACACATCAGCCGGTTCATCCTACCCATCGGCGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CCA 72 bp | CAGCACAGAATGTATTTGCCGAGGCTGATGAAGAGCTaGCGGACGTCTTTCATCTCCACAATCTTGCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: QHRMYLPRLMKS*RTSFISTILLA Trigger: GGCCAGCAAGATTGTGGAGATGAAAGACGTCCGCCAGCTCTTCATCAGCCTCGGCAAATACATTCTGTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CAA 72 bp | TCACGAGATCTAGAAAGGAATCCAGCACCTCTTTGGTaGGTGCACTGCGGGCACAGGGGTCTACAACAGAGT | + |
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Preference number: 6 (lower is better) Translates to: SRDLERNPAPLW*VHCGHRGLQQS Trigger: ACTCTGTTGTAGACCCCTGTGCCCGCAGTGCACCAACCAAAGAGGTGCTGGATTCCTTTCTAGATCTCGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS TCA 72 bp | CATTCCCTCCACCTCACAGAGAAGCTGGACCATGGTTaGATTGATCTCCCGCTGGATACAGGATTGCGGTAT | + |
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Preference number: 6 (lower is better) Translates to: HSLHLTEKLDHG*IDLPLDTGLRY Trigger: ATACCGCAATCCTGTATCCAGCGGGAGATCAATTCAACCATGGTCCAGCTTCTCTGTGAGGTGGAGGGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS TCA 72 bp | CCTCCACCTCACAGAGAAGCTGGACCATGGTTGAATTaGTCTCCCGCTGGATACAGGATTGCGGTATTTTAC | + |
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Preference number: 6 (lower is better) Translates to: PPPHREAGPWLN*SPAGYRIAVFY Trigger: GTAAAATACCGCAATCCTGTATCCAGCGGGAGATCAATTCAACCATGGTCCAGCTTCTCTGTGAGGTGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS CAA 72 bp | CCCTCCACCTCACAGAGAAGCTGGACCATGGTTGAATaGATCTCCCGCTGGATACAGGATTGCGGTATTTTA | + |
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Preference number: 6 (lower is better) Translates to: PSTSQRSWTMVE*ISRWIQDCGIL Trigger: TAAAATACCGCAATCCTGTATCCAGCGGGAGATCAATTCAACCATGGTCCAGCTTCTCTGTGAGGTGGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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| CDS GCA 72 bp | ACCATGGTTGAATTGATCTCCCGCTGGATACAGGATTaGGGTATTTTACATGAGTTGTCTTTGGGTTCATAT | + |
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Preference number: 6 (lower is better) Translates to: TMVELISRWIQD*GILHELSLGSY Trigger: ATATGAACCCAAAGACAACTCATGTAAAATACCGCAATCCTGTATCCAGCGGGAGATCAATTCAACCATGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108496.9 |
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