RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC16A7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020102

Ensembl transcript IDs: ENSMUST00000063318.10, ENSMUST00000105257.4, ENSMUST00000210780.2, ENSMUST00000211781.2

Found 196 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAGAAAGGCAGGCGCTGGAGTCTACTGACAGCATCTCCTCACACTaGTGGTGGTCCACAGGGACTTCGACTACAGTTCCCAAGCTTACT +
Preference number: 1 (lower is better)
Translates to: GERQALESTDSISSH*WWSTGTSTTVPKLT
Trigger: AGTAAGCTTGGGAACTGTAGTCGAAGTCCCTGTGGACCACCACCAGTGTGAGGAGATGCTGTCAGTAGACTCCAGCGCCTGCCTTTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp AAATTGAACTGTTTTACTTATTTCCTGCTGTCTGGGTGGAGCATGTaGCCCTGTGAGGGAAGATGGTTGGAACAGAACAGAAAGGGGAAG +
Preference number: 1 (lower is better)
Translates to: KLNCFTYFLLSGWSM*PCEGRWLEQNRKGK
Trigger: CTTCCCCTTTCTGTTCTGTTCCAACCATCTTCCCTCACAGGGTCACATGCTCCACCCAGACAGCAGGAAATAAGTAAAACAGTTCAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 90 bp TCCACTGTCAAAATGACAGTGTCAGTTGGTTACATGGCATCAGTCTaGTTGAATATAACCAGCATGCATCTGCCTGGAGAAGGTCTTCTG +
Preference number: 1 (lower is better)
Translates to: STVKMTVSVGYMASV*LNITSMHLPGEGLL
Trigger: CAGAAGACCTTCTCCAGGCAGATGCATGCTGGTTATATTCAACCAGACTGATGCCATGTAACCAACTGACACTGTCATTTTGACAGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp GGAATGACCCCTGGTCTTGTCAGTTCCACACCTATGAATTACTCATaGGATCAAGCTTATGTCACTACTTTGTGCTGGAGGGAAAAACAG +
Preference number: 1 (lower is better)
Translates to: GMTPGLVSSTPMNYS*DQAYVTTLCWREKQ
Trigger: CTGTTTTTCCCTCCAGCACAAAGTAGTGACATAAGCTTGATCTCATGAGTAATTCATAGGTGTGGAACTGACAAGACCAGGGGTCATTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp CAAAAGAGCATGCAGACAATGAAGATGTTATTAAGGTGGCATCACTaGGGATGTGTTCTATGTGCAGAAGGACCAGAAAGAGGGGACAAA +
Preference number: 1 (lower is better)
Translates to: QKSMQTMKMLLRWHH*GCVLCAEGPERGDK
Trigger: TTTGTCCCCTCTTTCTGGTCCTTCTGCACATAGAACACATCCTCAGTGATGCCACCTTAATAACATCTTCATTGTCTGCATGCTCTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 90 bp TGCATCTGCCTGGAGAAGGTCTTCTGTGTGCACACAAGATTCTCTTaGGCCATGTCAGTTTATGAACATTCTCATTACAATGGATCCTAT +
Preference number: 1 (lower is better)
Translates to: CICLEKVFCVHTRFS*AMSVYEHSHYNGSY
Trigger: ATAGGATCCATTGTAATGAGAATGTTCATAAACTGACATGGCCCAAGAGAATCTTGTGTGCACACAGAAGACCTTCTCCAGGCAGATGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp TACTGTTACTATCTAGCCCATTGCCTCTTCAAAAAGAAGCTGAAATaGCTAGGCCAAGACAAGTTCATACCCATTTATCTGTCTATGGGT +
Preference number: 1 (lower is better)
Translates to: YCYYLAHCLFKKKLK*LGQDKFIPIYLSMG
Trigger: ACCCATAGACAGATAAATGGGTATGAACTTGTCTTGGCCTAGTCATTTCAGCTTCTTTTTGAAGAGGCAATGGGCTAGATAGTAACAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp ACCTTTGCATACGCTGCCCATCAGTGTGTCAAAGAAAGCAAGATGTaGACTCCTAGTCTGATAATACTGTGTGAAGATGCAAGTTTTATT +
Preference number: 1 (lower is better)
Translates to: TFAYAAHQCVKESKM*TPSLIILCEDASFI
Trigger: AATAAAACTTGCATCTTCACACAGTATTATCAGACTAGGAGTTCACATCTTGCTTTCTTTGACACACTGATGGGCAGCGTATGCAAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 90 bp TGTAGAGACATTAGAAAATGCCATTCACAATACTATCACAACCTTTaGATACGCTGCCCATCAGTGTGTCAAAGAAAGCAAGATGTGAAC +
Preference number: 1 (lower is better)
Translates to: CRDIRKCHSQYYHNL*IRCPSVCQRKQDVN
Trigger: GTTCACATCTTGCTTTCTTTGACACACTGATGGGCAGCGTATGCAAAGGTTGTGATAGTATTGTGAATGGCATTTTCTAATGTCTCTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 90 bp CCTTATTTCAGGGAATACCCATATTTATGTGACCGTGTGGTGGTTTaGTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATGT +
Preference number: 1 (lower is better)
Translates to: PYFREYPYLCDRVVV*SVVIKIHREQNTVC
Trigger: ACATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACACGGTCACATAAATATGGGTATTCCCTGAAATAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 90 bp CTTAACCTTATTTCAGGGAATACCCATATTTATGTGACCGTGTGGTaGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAG +
Preference number: 1 (lower is better)
Translates to: LNLISGNTHIYVTVW*FAQWSSKYIESKTQ
Trigger: CTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACACGGTCACATAAATATGGGTATTCCCTGAAATAAGGTTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp TCTAATTTTTCGTATTGTCAGGTTGTAGGGATAGAGGCAGCGAGTTaGGAGGCTACGTCTTTACAGCATACTTTTGAATTTACCAAATTG +
Preference number: 1 (lower is better)
Translates to: SNFSYCQVVGIEAAS*EATSLQHTFEFTKL
Trigger: CAATTTGGTAAATTCAAAAGTATGCTGTAAAGACGTAGCCTCTCAACTCGCTGCCTCTATCCCTACAACCTGACAATACGAAAAATTAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 90 bp GCATTTCTGATGTGTCTCTTAGCTTTTTACATGTGCTCTCAAGTATaGAGAAGCATACGGACTCACAGGAGTCAAATCTGTAAAAATGAT +
Preference number: 1 (lower is better)
Translates to: AFLMCLLAFYMCSQV*RSIRTHRSQICKND
Trigger: ATCATTTTTACAGATTTGACTCCTGTGAGTCCGTATGCTTCTGCATACTTGAGAGCACATGTAAAAAGCTAAGAGACACATCAGAAATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 90 bp CTCAATGCCGATGTTAATTTTGCTCAATGTAGAGACATTAGAAAATaGCATTCACAATACTATCACAACCTTTGCATACGCTGCCCATCA +
Preference number: 1 (lower is better)
Translates to: LNADVNFAQCRDIRK*HSQYYHNLCIRCPS
Trigger: TGATGGGCAGCGTATGCAAAGGTTGTGATAGTATTGTGAATGGCATTTTCTAATGTCTCTACATTGAGCAAAATTAACATCGGCATTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 90 bp GCACTCTATCATCTTACATTTCTAAATGTCTGCAGGCATTCACACTaGATATTTTATACTTTACTTTTCACAAGAAGAGGCCGGTACAGC +
Preference number: 1 (lower is better)
Translates to: ALYHLTFLNVCRHSH*IFYTLLFTRRGRYS
Trigger: GCTGTACCGGCCTCTTCTTGTGAAAAGTAAAGTATAAAATATCCAGTGTGAATGCCTGCAGACATTTAGAAATGTAAGATGATAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 90 bp AATCTAGTCTACTTGAATATGTCAGCTCTTCTCATTTATTTGGCTTaGATAGTTCAGCACCCCATTAAATCTGCATTAAGCCCCCATTTT +
Preference number: 1 (lower is better)
Translates to: NLVYLNMSALLIYLA*IVQHPIKSALSPHF
Trigger: AAAATGGGGGCTTAATGCAGATTTAATGGGGTGCTGAACTATCCAAGCCAAATAAATGAGAAGAGCTGACATATTCAAGTAGACTAGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 90 bp TATCTTAACCTTATTTCAGGGAATACCCATATTTATGTGACCGTGTaGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACA +
Preference number: 1 (lower is better)
Translates to: YLNLISGNTHIYVTV*WFAQWSSKYIESKT
Trigger: TGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACACGGTCACATAAATATGGGTATTCCCTGAAATAAGGTTAAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 90 bp AGGAATTGCTATATATACAAAACATTCCAGAAATGTACATCAAGATaGACTTACAGTCACTTGTGGGAAGACAAAGAGCACTCTATCATC +
Preference number: 1 (lower is better)
Translates to: RNCYIYKTFQKCTSR*TYSHLWEDKEHSII
Trigger: GATGATAGAGTGCTCTTTGTCTTCCCACAAGTGACTGTAAGTTCATCTTGATGTACATTTCTGGAATGTTTTGTATATATAGCAATTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TGTCTCTTAGCTTTTTACATGTGCTCTCAAGTATGCAGAAGCATACGGACTCACGGCGCTGGAGTCTACTaGCAGCATCTCCTCACACTG +
Preference number: 2 (lower is better)
Translates to: CLLAFYMCSQVCRSIRTHGAGVY*QHLLTL
Trigger: CAGTGTGAGGAGATGCTGTCAGTAGACTCCAGCGCC...GTGAGTCCGTATGCTTCTGCATACTTGAGAGCACATGTAAAAAGCTAAGAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGACTCAGGTGCGCAGATaGGCAAGTGCGTGGGTTTTC +
Preference number: 2 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWTQVRR*ASAWVF
Trigger: GAAAACCCACGCACTTGCTCATCTGCGCACCTGAGT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp CTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTACAACTCAGGTGCGCAGATaGGCAAGTGCGTGGGTTTTC +
Preference number: 2 (lower is better)
Translates to: LLNVAHLIDKYHLIDQTTTQVRR*ASAWVF
Trigger: GAAAACCCACGCACTTGCTCATCTGCGCACCTGAGT...TGTAGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCATAGAGGCAGCGAGTTaGGAGGCTACGTCTTTACAG +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQAIEAAS*EATSLQ
Trigger: CTGTAAAGACGTAGCCTCTCAACTCGCTGCCTCTAT...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCTCATCACAACTCAGGTaGGCAGATGAGCAAGTGCGT +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQASSQLR*ADEQVR
Trigger: ACGCACTTGCTCATCTGCGCACCTGAGTTGTGATGA...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CAA 90 bp GTAGTCCAATCAGTAGAGGGCGGAATTTTCAAGTGTTTCCCCTCCTaGTATAACAAGAGATGTCTTCTGGGATGGAATTCAAGGTCTGGG +
Preference number: 2 (lower is better)
Translates to: VVQSVEGGIFKCFPS*YNKRCLLGWNSRSG
Trigger: CCCAGACCTTGAATTCCATCCCAGAAGACATCTCTTGTTATACAAGGAGGGGAAACACTTGAAAATTCCGCCCTCTACTGATTGGACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CAA 90 bp AGTAAGGGAAAGACTCCAAGGCCTTTCCATTTTACTCTTTGGAACTaGTTAGAGAATTCCCCTCCTATGCCTCAGGCCACATCAGAGGAA +
Preference number: 2 (lower is better)
Translates to: SKGKTPRPFHFTLWN*LENSPPMPQATSEE
Trigger: TTCCTCTGATGTGGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAAAGGCCTTGGAGTCTTTCCCTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCGAGGATGTGAAGTTCTaGCCTGAGGCAATATGTGCT +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQAEDVKF*PEAICA
Trigger: AGCACATATTGCCTCAGGTCAGAACTTCACATCCTC...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTCATCACAACTCAGGTaGGCAGATGAGCAAGTGCGT +
Preference number: 2 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWSSQLR*ADEQVR
Trigger: ACGCACTTGCTCATCTGCGCACCTGAGTTGTGATGA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CAA 90 bp ACTGTCAAAATGACAGTGTCAGTTGGTTACATGGCATCAGTCTGGTaGAATATAACCAGCATGCATCTGCCTGGAGAAGGTCTTCTGTGT +
Preference number: 2 (lower is better)
Translates to: TVKMTVSVGYMASVW*NITSMHLPGEGLLC
Trigger: ACACAGAAGACCTTCTCCAGGCAGATGCATGCTGGTTATATTCAACCAGACTGATGCCATGTAACCAACTGACACTGTCATTTTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTACTCAGGTGCGCAGATaGGCAAGTGCGTGGGTTTTC +
Preference number: 2 (lower is better)
Translates to: VWNADLILQLKVKIGGRFTQVRR*ASAWVF
Trigger: GAAAACCCACGCACTTGCTCATCTGCGCACCTGAGT...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCCTATATGTGAGGATGTaGAGTTCTGACCTGAGGCAA +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQALYVRM*SSDLRQ
Trigger: TTGCCTCAGGTCAGAACTTCACATCCTCACATATAG...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCATACCCATATTTATGTaGCCGTGTGGTGGTTTGCTC +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQAIPIFM*PCGGLL
Trigger: GAGCAAACCACCACACGGTCACATAAATATGGGTAT...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAAATGAGCAGGGCTCAGGAATaGCCCCTGGTCTTGTCAGTT +
Preference number: 2 (lower is better)
Translates to: LKQQIFQQVQWTNTSKQMSRAQE*PLVLSV
Trigger: AACTGACAAGACCAGGGGTCATTCCTGAGCCCTGCT...CATTTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCTGTGAAGTTCTGACCTaGGGCAATATGTGCTATTCT +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQACEVLT*GNMCYS
Trigger: AGAATAGCACATATTGCCTCAGGTCAGAACTTCACA...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTCATCACAACTCAGGTaGGCAGATGAGCAAGTGCGT +
Preference number: 2 (lower is better)
Translates to: GLECRSNSAAKSKNRWKISSQLR*ADEQVR
Trigger: ACGCACTTGCTCATCTGCGCACCTGAGTTGTGATGA...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAAAGCATCTCCTCACACTaGTGGTGGTCCACAGGGACT +
Preference number: 2 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQSISSH*WWSTGT
Trigger: AGTCCCTGTGGACCACCACCAGTGTGAGGAGATGCT...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp TTCCTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTGTGAGGGAAGATGGTTaGAACAGAACAGAAAGGGGA +
Preference number: 2 (lower is better)
Translates to: FLLNVAHLIDKYHLIDQTVREDG*NRTERG
Trigger: TCCCCTTTCTGTTCTGTTCCAACCATCTTCCCTCAC...AGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CAA 90 bp ATGAGCAAACTCCTAAAGTACCCTGAACAACAATTCTCTGCCATGTaGCTACTGTGTTATAAACTACATGTCTGTCAGTCCCCACAGCTT +
Preference number: 2 (lower is better)
Translates to: MSKLLKYPEQQFSAM*LLCYKLHVCQSPQL
Trigger: AAGCTGTGGGGACTGACAGACATGTAGTTTATAACACAGTAGCAACATGGCAGAGAATTGTTGTTCAGGGTACTTTAGGAGTTTGCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATATGTGCTCTCAAGTATaGAGAAGCATACGGACTCAC +
Preference number: 2 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYMCSQV*RSIRTH
Trigger: GTGAGTCCGTATGCTTCTGCATACTTGAGAGCACAT...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAATTGCCAGAAGTGTCCTaGGGACACACTCCAGCTTTT +
Preference number: 2 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQLPEVS*GHTPAF
Trigger: AAAAGCTGGAGTGTGTCCCCAGGACACTTCTGGCAA...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCAATTCTCTGCCATGTTaGTACTGTGTTATAAACTAC +
Preference number: 2 (lower is better)
Translates to: FHFTLWNLLENSPPMPQANSLPC*YCVINY
Trigger: GTAGTTTATAACACAGTAGCAACATGGCAGAGAATT...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATTACTATCTAGCCCATTaGCTCTTCAAAAAGAAGCTG +
Preference number: 2 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYYYLAH*LFKKKL
Trigger: CAGCTTCTTTTTGAAGAGGCAATGGGCTAGATAGTA...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTGTGTGCAGATTAAACTaGCACAAGTATGGCAGATTG +
Preference number: 2 (lower is better)
Translates to: NIQFHSATHSPQELFHYSVCRLN*HKYGRL
Trigger: CAATCTGCCATACTTGTGCCAGTTTAATCTGCACAC...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTTTTTTCCCCTCTACTTaGGTAATTAGGGACACACAC +
Preference number: 2 (lower is better)
Translates to: NIQFHSATHSPQELFHYSFFPST*VIRDTH
Trigger: GTGTGTGTCCCTAATTACCCAAGTAGAGGGGAAAAA...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp CCAACTGTGATAACCAAGGCTATCTTAACCTTATTTCAGGGAATACCCATATTTGGTCTTTTCTATATGTaGGGATGTGAAGTTCTGACC +
Preference number: 2 (lower is better)
Translates to: PTVITKAILTLFQGIPIFGLFYM*GCEVLT
Trigger: GGTCAGAACTTCACATCCTCACATATAGAAAAGACC...AAATATGGGTATTCCCTGAAATAAGGTTAAGATAGCCTTGGTTATCACAGTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp TTCCTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTTATGTCACTACTTTGTaGTGGAGGGAAAAACAGAAT +
Preference number: 2 (lower is better)
Translates to: FLLNVAHLIDKYHLIDQTYVTTL*WREKQN
Trigger: ATTCTGTTTTTCCCTCCAGCACAAAGTAGTGACATA...AGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp TGTCTCTTAGCTTTTTACATGTGCTCTCAAGTATGCAGAAGCATACGGACTCACAGCCACATATTGCCCTaGTTAATTTCTCTACAATAT +
Preference number: 2 (lower is better)
Translates to: CLLAFYMCSQVCRSIRTHSHILP*LISLQY
Trigger: ATATTGTAGAGAAATTAAGCAGGGCAATATGTGGCT...GTGAGTCCGTATGCTTCTGCATACTTGAGAGCACATGTAAAAAGCTAAGAGACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp TTCCTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTAGAAGTCTTCAAGACTaGAAATACGTTTCTGTTCTC +
Preference number: 2 (lower is better)
Translates to: FLLNVAHLIDKYHLIDQTRSLQD*KYVSVL
Trigger: GAGAACAGAAACGTATTTGCAGTCTTGAAGACTTCT...AGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATATAGAAACCTGTGGTTaGTATAGTGAGTGTGTTGTA +
Preference number: 2 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYIETCG*YSECVV
Trigger: TACAACACACTCACTATAGCAACCACAGGTTTCTAT...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATGTTAGATATGAATTCTaGAAATTAATGGAGGGGTTC +
Preference number: 2 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYVRYEF*KLMEGF
Trigger: GAACCCCTCCATTAATTTCCAGAATTCATATCTAAC...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAAACAAGAGATGTCTTCTaGGATGGAATTCAAGGTCTG +
Preference number: 2 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQTRDVF*DGIQGL
Trigger: CAGACCTTGAATTCCATCCCAGAAGACATCTCTTGT...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR TCA 90 bp CCAACTGTGATAACCAAGGCTATCTTAACCTTATTTCAGGGAATACCCATATTTCCATTTATTTCTTTATaGTCTCCCGATACTCAGTGT +
Preference number: 2 (lower is better)
Translates to: PTVITKAILTLFQGIPIFPFISL*SPDTQC
Trigger: ACACTGAGTATCGGGAGATCATAAAGAAATAAATGG...AAATATGGGTATTCCCTGAAATAAGGTTAAGATAGCCTTGGTTATCACAGTTGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTAGTTTTGTTACTGTTTaGGATGTTTTTGTTGCAGCT +
Preference number: 2 (lower is better)
Translates to: GLECRSNSAAKSKNRWKISFVTV*DVFVAA
Trigger: AGCTGCAACAAAAACATCGCAAACAGTAACAAAACT...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTAAATATTTCAACAGGTaGAGTGGACAAATACAAGCA +
Preference number: 2 (lower is better)
Translates to: NIQFHSATHSPQELFHYSKYFNR*SGQIQA
Trigger: TGCTTGTATTTGTCCACTGCACCTGTTGAAATATTT...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTAATTTGATAATATACTaGGTTTCTGTGTTCCTGCTG +
Preference number: 2 (lower is better)
Translates to: NIQFHSATHSPQELFHYSNLIIY*VSVFLL
Trigger: CAGCAGGAACACAGAAACCCAGTATATTATCAAATT...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR GCA 90 bp GCTTCTAAAGCATGGATTCATCCGATTTTTCAGTGTCTCTGCATTTTAAATCAAAGTTTTGTTACTGTTTaGGATGTTTTTGTTGCAGCT +
Preference number: 2 (lower is better)
Translates to: ASKAWIHPIFQCLCILNQSFVTV*DVFVAA
Trigger: AGCTGCAACAAAAACATCGCAAACAGTAACAAAACT...TTGATTTAAAATGCAGAGACACTGAAAAATCGGATGAATCCATGCTTTAGAAGC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAATATCAGAAGCATTTATaGTTGACTAGGATGACTTCT +
Preference number: 2 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQYQKHL*LTRMTS
Trigger: AGAAGTCATCCTAGTCAACCATAAATGCTTCTGATA...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp CACTTCCCAGGGAGAAAGGCAGGCGCTGGAGTCTACTaGCAGCATCTCCTCACACTGGTGGTGGTCCACAGG +
Preference number: 3 (lower is better)
Translates to: HFPGRKAGAGVY*QHLLTLVVVHR
Trigger: CCTGTGGACCACCACCAGTGTGAGGAGATGCTGTCAGTAGACTCCAGCGCCTGCCTTTCTCCCTGGGAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp CATGTGACATCACTTCCCAGGGAGAAAGGCAGGCGCTaGAGTCTACTGACAGCATCTCCTCACACTGGTGGT +
Preference number: 3 (lower is better)
Translates to: HVTSLPREKGRR*SLLTASPHTGG
Trigger: ACCACCAGTGTGAGGAGATGCTGTCAGTAGACTCCAGCGCCTGCCTTTCTCCCTGGGAAGTGATGTCACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp TTATTTCCTGCTGTCTGGGTGGAGCATGTGACCCTGTaGGGGAAGATGGTTGGAACAGAACAGAAAGGGGAA +
Preference number: 3 (lower is better)
Translates to: LFPAVWVEHVTL*GKMVGTEQKGE
Trigger: TTCCCCTTTCTGTTCTGTTCCAACCATCTTCCCTCACAGGGTCACATGCTCCACCCAGACAGCAGGAAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp TGTCAGTCCCCACAGCTTATGTTGCCAGAAGTGTCCTaGGGACACACTCCAGCTTTTCTGTTCTATTCTCAG +
Preference number: 3 (lower is better)
Translates to: CQSPQLMLPEVS*GHTPAFLFYSQ
Trigger: CTGAGAATAGAACAGAAAAGCTGGAGTGTGTCCCCAGGACACTTCTGGCAACATAAGCTGTGGGGACTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp CCAGGCAAAGAAGCGTCCTTACATGTGGGCTGGAGTTaGACATCGTGTTTTGATCAGCACAGAATAGCACAG +
Preference number: 3 (lower is better)
Translates to: PGKEASLHVGWS*TSCFDQHRIAQ
Trigger: CTGTGCTATTCTGTGCTGATCAAAACACGATGTCCAACTCCAGCCCACATGTAAGGACGCTTCTTTGCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 72 bp TGTTTTCATCACAACTCAGGTGCGCAGATGAGCAAGTaGGTGGGTTTTCTACGTGCACCATCTCAAGAGTTG +
Preference number: 3 (lower is better)
Translates to: CFHHNSGAQMSK*VGFLRAPSQEL
Trigger: CAACTCTTGAGATGGTGCACGTAGAAAACCCACGCACTTGCTCATCTGCGCACCTGAGTTGTGATGAAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR TCA 72 bp TGTTTTACTTATTTCCTGCTGTCTGGGTGGAGCATGTaGCCCTGTGAGGGAAGATGGTTGGAACAGAACAGA +
Preference number: 3 (lower is better)
Translates to: CFTYFLLSGWSM*PCEGRWLEQNR
Trigger: TCTGTTCTGTTCCAACCATCTTCCCTCACAGGGTCACATGCTCCACCCAGACAGCAGGAAATAAGTAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 72 bp TGGCCGGTAGAAGGACGGCCCATAGAAACCTGTGGTTaGTATAGTGAGTGTGTTGTATACAAAGTAGGTCTA +
Preference number: 3 (lower is better)
Translates to: WPVEGRPIETCG*YSECVVYKVGL
Trigger: TAGACCTACTTTGTATACAACACACTCACTATAGCAACCACAGGTTTCTATGGGCCGTCCTTCTACCGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp GGACACACTCCAGCTTTTCTGTTCTATTCTCAGTCGTaGGTAGTCCAATCAGTAGAGGGCGGAATTTTCAAG +
Preference number: 3 (lower is better)
Translates to: GHTPAFLFYSQS*VVQSVEGGIFK
Trigger: CTTGAAAATTCCGCCCTCTACTGATTGGACTACCCACGACTGAGAATAGAACAGAAAAGCTGGAGTGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp CCCCTCCTATGCCTCAGGCCACATCAGAGGAAACTGTaGGACTCTCAACTATCTGTTTCATTCATTCATTTC +
Preference number: 3 (lower is better)
Translates to: PLLCLRPHQRKL*DSQLSVSFIHF
Trigger: GAAATGAATGAATGAAACAGATAGTTGAGAGTCCCACAGTTTCCTCTGATGTGGCCTGAGGCATAGGAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp ATACATCCAGGCAAAGAAGCGTCCTTACATGTGGGCTaGAGTTGGACATCGTGTTTTGATCAGCACAGAATA +
Preference number: 3 (lower is better)
Translates to: IHPGKEASLHVG*SWTSCFDQHRI
Trigger: TATTCTGTGCTGATCAAAACACGATGTCCAACTCCAGCCCACATGTAAGGACGCTTCTTTGCCTGGATGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp GTTATATACATCCAGGCAAAGAAGCGTCCTTACATGTaGGCTGGAGTTGGACATCGTGTTTTGATCAGCACA +
Preference number: 3 (lower is better)
Translates to: VIYIQAKKRPYM*AGVGHRVLIST
Trigger: TGTGCTGATCAAAACACGATGTCCAACTCCAGCCCACATGTAAGGACGCTTCTTTGCCTGGATGTATATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCGCTTATGTCACTACTTaGTGCTGGAGGGAAAAACAG +
Preference number: 3 (lower is better)
Translates to: FHFTLWNLLENSPPMPQAAYVTT*CWREKQ
Trigger: CTGTTTTTCCCTCCAGCACAAAGTAGTGACATAAGC...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCGCTCTTCTCATTTATTaGGCTTGGATAGTTCAGCAC +
Preference number: 3 (lower is better)
Translates to: FHFTLWNLLENSPPMPQAALLIY*AWIVQH
Trigger: GTGCTGAACTATCCAAGCCAAATAAATGAGAAGAGC...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTTGTGAGGGAAGATGGTaGGAACAGAACAGAAAGGGG +
Preference number: 3 (lower is better)
Translates to: NIQFHSATHSPQELFHYSCEGRW*EQNRKG
Trigger: CCCCTTTCTGTTCTGTTCCAACCATCTTCCCTCACA...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTGATAGAGGCAGCGAGTaGAGAGGCTACGTCTTTACA +
Preference number: 3 (lower is better)
Translates to: NIQFHSATHSPQELFHYSDRGSE*RGYVFT
Trigger: TGTAAAGACGTAGCCTCTCAACTCGCTGCCTCTATC...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp TACGCTGCCCATCAGTGTGTCAAAGAAAGCAAGATGTaGACTCCTAGTCTGATAATACTGTGTGAAGATGCA +
Preference number: 3 (lower is better)
Translates to: YAAHQCVKESKM*TPSLIILCEDA
Trigger: TGCATCTTCACACAGTATTATCAGACTAGGAGTTCACATCTTGCTTTCTTTGACACACTGATGGGCAGCGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 72 bp TGCCATTCACAATACTATCACAACCTTTGCATACGCTaGCCATCAGTGTGTCAAAGAAAGCAAGATGTGAAC +
Preference number: 3 (lower is better)
Translates to: CHSQYYHNLCIR*PSVCQRKQDVN
Trigger: GTTCACATCTTGCTTTCTTTGACACACTGATGGGCAGCGTATGCAAAGGTTGTGATAGTATTGTGAATGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp AGTGTTTCCCCTCCTTGTATAACAAGAGATGTCTTCTaGGATGGAATTCAAGGTCTGGGTTTGGTTTTTGCT +
Preference number: 3 (lower is better)
Translates to: SVSPPCITRDVF*DGIQGLGLVFA
Trigger: AGCAAAAACCAAACCCAGACCTTGAATTCCATCCCAGAAGACATCTCTTGTTATACAAGGAGGGGAAACACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp ATGCAGACAATGAAGATGTTATTAAGGTGGCATCACTaGGGATGTGTTCTATGTGCAGAAGGACCAGAAAGA +
Preference number: 3 (lower is better)
Translates to: MQTMKMLLRWHH*GCVLCAEGPER
Trigger: TCTTTCTGGTCCTTCTGCACATAGAACACATCCTCAGTGATGCCACCTTAATAACATCTTCATTGTCTGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 72 bp AGGGAATACCCATATTTATGTGACCGTGTGGTGGTTTaGTCAGTGGTCATCAAAATACATAGAGAGCAAAAC +
Preference number: 3 (lower is better)
Translates to: REYPYLCDRVVV*SVVIKIHREQN
Trigger: GTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACACGGTCACATAAATATGGGTATTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp CTGGAGAAGGTCTTCTGTGTGCACACAAGATTCTCTTaGGCCATGTCAGTTTATGAACATTCTCATTACAAT +
Preference number: 3 (lower is better)
Translates to: LEKVFCVHTRFS*AMSVYEHSHYN
Trigger: ATTGTAATGAGAATGTTCATAAACTGACATGGCCCAAGAGAATCTTGTGTGCACACAGAAGACCTTCTCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp TGTCTCTTAGCTTTTTACATGTGCTCTCAAGTATGCAGAAGCATACGGACTCACCAGAAGCATTTATGGTaGACTAGGATGACTTCTTTG +
Preference number: 3 (lower is better)
Translates to: CLLAFYMCSQVCRSIRTHQKHLW*TRMTSL
Trigger: CAAAGAAGTCATCCTAGTCAACCATAAATGCTTCTG...GTGAGTCCGTATGCTTCTGCATACTTGAGAGCACATGTAAAAAGCTAAGAGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp CTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTACAAGCCCCTACTCTAATTaGCATTCTCCCAGTAAATTG +
Preference number: 3 (lower is better)
Translates to: LLNVAHLIDKYHLIDQTTSPYSN*HSPSKL
Trigger: CAATTTACTGGGAGAATGCAAATTAGAGTAGGGGCT...TGTAGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTTTGCGATGTTTTTGTaGCAGCTAAAATCCTTTGCA +
Preference number: 3 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWFAMFL*QLKSFA
Trigger: TGCAAAGGATTTTAGCTGCAACAAAAACATCGCAAA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp CTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTACATCTATTATGGTTTTGTaGCTGATTCGAGTGAGACAC +
Preference number: 3 (lower is better)
Translates to: LLNVAHLIDKYHLIDQTTSIMVL*LIRVRH
Trigger: GTGTCTCACTCGAATCAGCAACAAAACCATAATAGA...TGTAGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp CTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTACATTACTATCTAGCCCATaGCCTCTTCAAAAAGAAGCT +
Preference number: 3 (lower is better)
Translates to: LLNVAHLIDKYHLIDQTTLLSSP*PLQKEA
Trigger: AGCTTCTTTTTGAAGAGGCAATGGGCTAGATAGTAA...TGTAGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp CCAACTGTGATAACCAAGGCTATCTTAACCTTATTTCAGGGAATACCCATATTTTACTGTCATTTCTATTaGGTAGCTGAGGGAACACCC +
Preference number: 3 (lower is better)
Translates to: PTVITKAILTLFQGIPIFYCHFY*VAEGTP
Trigger: GGGTGTTCCCTCAGCTACCAAATAGAAATGACAGTA...AAATATGGGTATTCCCTGAAATAAGGTTAAGATAGCCTTGGTTATCACAGTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp CCAACTGTGATAACCAAGGCTATCTTAACCTTATTTCAGGGAATACCCATATTTGGCACTTTCAGGAACTaGGAGAAATTCCAGATGGTA +
Preference number: 3 (lower is better)
Translates to: PTVITKAILTLFQGIPIFGTFRN*EKFQMV
Trigger: TACCATCTGGAATTTCTCCAAGTTCCTGAAAGTGCC...AAATATGGGTATTCCCTGAAATAAGGTTAAGATAGCCTTGGTTATCACAGTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp TATCTAGCCCATTGCCTCTTCAAAAAGAAGCTGAAATaGCTAGGCCAAGACAAGTTCATACCCATTTATCTG +
Preference number: 3 (lower is better)
Translates to: YLAHCLFKKKLK*LGQDKFIPIYL
Trigger: CAGATAAATGGGTATGAACTTGTCTTGGCCTAGTCATTTCAGCTTCTTTTTGAAGAGGCAATGGGCTAGATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp CAACTATCTGTTTCATTCATTCATTTCCACGACGAATaGCTCTATGCCCTAGGGTGCATAAATGTCGCTAAT +
Preference number: 3 (lower is better)
Translates to: QLSVSFIHFHDE*LYALGCINVAN
Trigger: ATTAGCGACATTTATGCACCCTAGGGCATAGAGTCATTCGTCGTGGAAATGAATGAATGAAACAGATAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp TCAGCAGACAGGAGCCCTCGTGATCAAGGTCAATGTTaGAAAATAAGTAGCACCTTTAGTAATTACAATGAT +
Preference number: 3 (lower is better)
Translates to: SADRSPRDQGQC*KISSTFSNYND
Trigger: ATCATTGTAATTACTAAAGGTGCTACTTATTTTCCAACATTGACCTTGATCACGAGGGCTCCTGTCTGCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTCAGTTTTGTTACTGTTaGCGATGTTTTTGTTGCAGC +
Preference number: 3 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIQFCYC*RCFCCS
Trigger: GCTGCAACAAAAACATCGCAAACAGTAACAAAACTG...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTGAAATTAATGTTGAATaGTGCTTAGGTGAGCCAAGG +
Preference number: 3 (lower is better)
Translates to: NIQFHSATHSPQELFHYSEINVE*CLGEPR
Trigger: CCTTGGCTCACCTAAGCACAATTCAACATTAATTTC...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp CCAACTGTGATAACCAAGGCTATCTTAACCTTATTTCAGGGAATACCCATATTTTCTCATTTATTTGGCTaGGATAGTTCAGCACCCCAT +
Preference number: 3 (lower is better)
Translates to: PTVITKAILTLFQGIPIFSHLFG*DSSAPH
Trigger: ATGGGGTGCTGAACTATCCAAGCCAAATAAATGAGA...AAATATGGGTATTCCCTGAAATAAGGTTAAGATAGCCTTGGTTATCACAGTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATCATTTTGGTTTTGATTaGATGCATCAGCATGTGACA +
Preference number: 3 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYHFGFD*MHQHVT
Trigger: TGTCACATGCTGATGCATCAAATCAAAACCAAAATG...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp TTAGGTTTGGAAAATGAGCAAACTCCTAAAGTACCCTaGACAACAATTCTCTGCCATGTTGCTACTGTGTTA +
Preference number: 3 (lower is better)
Translates to: LGLENEQTPKVP*TTILCHVATVL
Trigger: TAACACAGTAGCAACATGGCAGAGAATTGTTGTTCAGGGTACTTTAGGAGTTTGCTCATTTTCCAAACCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp AGAAGGGTCTTTTCTATATGTGAGGATGTGAAGTTCTaGCCTGAGGCAATATGTGCTATTCTTGAAAATCAC +
Preference number: 3 (lower is better)
Translates to: RRVFSICEDVKF*PEAICAILENH
Trigger: GTGATTTTCAAGAATAGCACATATTGCCTCAGGTCAGAACTTCACATCCTCACATATAGAAAAGACCCTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp ATCTTAACCTTATTTCAGGGAATACCCATATTTATGTaGCCGTGTGGTGGTTTGCTCAGTGGTCATCAAAAT +
Preference number: 3 (lower is better)
Translates to: ILTLFQGIPIFM*PCGGLLSGHQN
Trigger: ATTTTGATGACCACTGAGCAAACCACCACACGGTCACATAAATATGGGTATTCCCTGAAATAAGGTTAAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR GCA 72 bp ATTAGAAAATGCCATTCACAATACTATCACAACCTTTaGATACGCTGCCCATCAGTGTGTCAAAGAAAGCAA +
Preference number: 3 (lower is better)
Translates to: IRKCHSQYYHNL*IRCPSVCQRKQ
Trigger: TTGCTTTCTTTGACACACTGATGGGCAGCGTATGCAAAGGTTGTGATAGTATTGTGAATGGCATTTTCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp TCAAAGAGTGCAAGAAATTCTTATCAGAAGCATTTATaGTTGACTAGGATGACTTCTTTGGACACACAGGAG +
Preference number: 3 (lower is better)
Translates to: SKSARNSYQKHL*LTRMTSLDTQE
Trigger: CTCCTGTGTGTCCAAAGAAGTCATCCTAGTCAACCATAAATGCTTCTGATAAGAATTTCTTGCACTCTTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTTTGCGATGTTTTTGTaGCAGCTAAAATCCTTTGCA +
Preference number: 3 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIFAMFL*QLKSFA
Trigger: TGCAAAGGATTTTAGCTGCAACAAAAACATCGCAAA...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTCAGTTTTGTTACTGTTaGCGATGTTTTTGTTGCAGC +
Preference number: 3 (lower is better)
Translates to: VWNADLILQLKVKIGGRFQFCYC*RCFCCS
Trigger: GCTGCAACAAAAACATCGCAAACAGTAACAAAACTG...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTATTTATACTATGGCATaGAGGAAGATGCCAGTTTTG +
Preference number: 3 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIIYTMA*RKMPVL
Trigger: CAAAACTGGCATCTTCCTCAATGCCATAGTATAAAT...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTATTTATACTATGGCATaGAGGAAGATGCCAGTTTTG +
Preference number: 3 (lower is better)
Translates to: NIQFHSATHSPQELFHYSIYTMA*RKMPVL
Trigger: CAAAACTGGCATCTTCCTCAATGCCATAGTATAAAT...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR TCA 72 bp TCTCAAGAGTTGACCATCCCAACAAATGTTAAAGCATaGATTTATACTATGGCATTGAGGAAGATGCCAGTT +
Preference number: 3 (lower is better)
Translates to: SQELTIPTNVKA*IYTMALRKMPV
Trigger: AACTGGCATCTTCCTCAATGCCATAGTATAAATTCATGCTTTAACATTTGTTGGGATGGTCAACTCTTGAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CCA 72 bp TACTTGAATATGTCAGCTCTTCTCATTTATTTGGCTTaGATAGTTCAGCACCCCATTAAATCTGCATTAAGC +
Preference number: 3 (lower is better)
Translates to: YLNMSALLIYLA*IVQHPIKSALS
Trigger: GCTTAATGCAGATTTAATGGGGTGCTGAACTATCCAAGCCAAATAAATGAGAAGAGCTGACATATTCAAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp TTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAAATGTTTGCGATGTTTTTGTaGCAGCTAAAATCCTTTGCA +
Preference number: 3 (lower is better)
Translates to: LKQQIFQQVQWTNTSKQMFAMFL*QLKSFA
Trigger: TGCAAAGGATTTTAGCTGCAACAAAAACATCGCAAA...CATTTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR-3UTR CAA 90 bp TTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAAATGCAATTCTCTGCCATGTaGCTACTGTGTTATAAACTA +
Preference number: 3 (lower is better)
Translates to: LKQQIFQQVQWTNTSKQMQFSAM*LLCYKL
Trigger: TAGTTTATAACACAGTAGCAACATGGCAGAGAATTG...CATTTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp ATTAGTCACTGTGATGTTAATAATTTGATAATATACTaGGTTTCTGTGTTCCTGCTGAATGTTGCTCACCTT +
Preference number: 3 (lower is better)
Translates to: ISHCDVNNLIIY*VSVFLLNVAHL
Trigger: AAGGTGAGCAACATTCAGCAGGAACACAGAAACCCAGTATATTATCAAATTATTAACATCACAGTGACTAAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CCA 72 bp ATATGCATCTCTATGAAAACACCATTTATCTTCATTTaGGGGGTTGGTATAGTCACTTCTATACAAGTCTTA +
Preference number: 3 (lower is better)
Translates to: ICISMKTPFIFI*GVGIVTSIQVL
Trigger: TAAGACTTGTATAGAAGTGACTATACCAACCCCCCAAATGAAGATAAATGGTGTTTTCATAGAGATGCATAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTCCGTCGGGAGGAAGTaGTTGTGGAAGCGGCGCGGA +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWSVGRK*LWKRRG
Trigger: TCCGCGCCGCTTCCACAACCACTTCCTCCCGACGGA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGTCCGTCGGGAGGAAGTaGTTGTGGAAGCGGCGCGGA +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKSVGRK*LWKRRG
Trigger: TCCGCGCCGCTTCCACAACCACTTCCTCCCGACGGA...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTCACCAACACACTACTaGTGGGACCTCCCGCATACA +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWSPTHY*WDLPHT
Trigger: TGTATGCGGGAGGTCCCATCAGTAGTGTGTTGGTGA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGCTCTTTGTCCCTGTCTaGGGGAGGATTGTGTGCGTT +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWLFVPV*GRIVCV
Trigger: AACGCACACAATCCTCCCTCAGACAGGGACAAAGAG...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp TGTCTCTTAGCTTTTTACATGTGCTCTCAAGTATGCAGAAGCATACGGACTCACCTCTTTGTCCCTGTCTaGGGGAGGATTGTGTGCGTT +
Preference number: 4 (lower is better)
Translates to: CLLAFYMCSQVCRSIRTHLFVPV*GRIVCV
Trigger: AACGCACACAATCCTCCCTCAGACAGGGACAAAGAG...GTGAGTCCGTATGCTTCTGCATACTTGAGAGCACATGTAAAAAGCTAAGAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGGGGCCTCCATTTCTCTaGACGCGTGTGAAGCTGACT +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKGPPFL*TRVKLT
Trigger: AGTCAGCTTCACACGCGTCCAGAGAAATGGAGGCCC...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CAA 72 bp TATAAACTACATGTCTGTCAGTCCCCACAGCTTATGTaGCCAGAAGTGTCCTGGGGACACACTCCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: YKLHVCQSPQLM*PEVSWGHTPAF
Trigger: AAAAGCTGGAGTGTGTCCCCAGGACACTTCTGGCAACATAAGCTGTGGGGACTGACAGACATGTAGTTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTCACCAACACACTACTaGTGGGACCTCCCGCATACA +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKISPTHY*WDLPHT
Trigger: TGTATGCGGGAGGTCCCATCAGTAGTGTGTTGGTGA...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAGGCTGGTTGCAGGTTaGATGCTAATCCTAAACCTC +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWRLVAG*MLILNL
Trigger: GAGGTTTAGGATTAGCATTCAACCTGCAACCAGCCT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTGGGCCTCCATTTCTCTaGACGCGTGTGAAGCTGACT +
Preference number: 4 (lower is better)
Translates to: VWNADLILQLKVKIGGRFGPPFL*TRVKLT
Trigger: AGTCAGCTTCACACGCGTCCAGAGAAATGGAGGCCC...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CAA 72 bp AATGCATGCCACAGACCTCTTAGCCCCTACTCTAATTaGCATTCTCCCAGTAAATTGAGCCAAACTTTTGGC +
Preference number: 4 (lower is better)
Translates to: NACHRPLSPYSN*HSPSKLSQTFG
Trigger: GCCAAAAGTTTGGCTCAATTTACTGGGAGAATGCAAATTAGAGTAGGGGCTAAGAGGTCTGTGGCATGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGGATATCCAAGCGATCTaGCTGGAGGTGGTGTTGAAT +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKDIQAI*LEVVLN
Trigger: ATTCAACACCACCTCCAGTCAGATCGCTTGGATATC...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTTCACCAACACACTACTaGTGGGACCTCCCGCATACA +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLSPTHY*WDLPHT
Trigger: TGTATGCGGGAGGTCCCATCAGTAGTGTGTTGGTGA...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGAGGCTGGTTGCAGGTTaGATGCTAATCCTAAACCTC +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKRLVAG*MLILNL
Trigger: GAGGTTTAGGATTAGCATTCAACCTGCAACCAGCCT...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTCTCTTTGTCCCTGTCTaGGGGAGGATTGTGTGCGTT +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLLFVPV*GRIVCV
Trigger: AACGCACACAATCCTCCCTCAGACAGGGACAAAGAG...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTCACCACAGGCCGGCTaGCATAGTTATTCACCAACA +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKISPQAG*HSYSPT
Trigger: TGTTGGTGAATAACTATGGCAGCCGGCCTGTGGTGA...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGCATGGCGCAGCCATTTaGAAGTGGTCGTCTTCTATA +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKHGAAI*KWSSSI
Trigger: TATAGAAGACGACCACTTGCAAATGGCTGCGCCATG...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGCCAGCCACACAGGAGTaGAAAAATATACCTCCCAAA +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWPATQE*KNIPPK
Trigger: TTTGGGAGGTATATTTTTGCACTCCTGTGTGGCTGG...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAAGGGCCTCCATTTCTCTaGACGCGTGTGAAGCTGACT +
Preference number: 4 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQGPPFL*TRVKLT
Trigger: AGTCAGCTTCACACGCGTCCAGAGAAATGGAGGCCC...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
3UTR CAA 72 bp TCAGTAGAGGGCGGAATTTTCAAGTGTTTCCCCTCCTaGTATAACAAGAGATGTCTTCTGGGATGGAATTCA +
Preference number: 4 (lower is better)
Translates to: SVEGGIFKCFPS*YNKRCLLGWNS
Trigger: TGAATTCCATCCCAGAAGACATCTCTTGTTATACAAGGAGGGGAAACACTTGAAAATTCCGCCCTCTACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTACAGACTGGAGGTGGTGTTaGATATTTCCTGGATGTCTT +
Preference number: 4 (lower is better)
Translates to: LLNVAHLIDKYHLIDQTTDWRWC*IFPGCL
Trigger: AAGACATCCAGGAAATATTCAACACCACCTCCAGTC...TGTAGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTAGGCTGGTTGCAGGTTaGATGCTAATCCTAAACCTC +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIRLVAG*MLILNL
Trigger: GAGGTTTAGGATTAGCATTCAACCTGCAACCAGCCT...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp TTCCATTTTACTCTTTGGAACTTGTTAGAGAATTCCCCTCCTATGCCTCAGGCCATGTGTTTAGCGTACTaGGCCAAGAATATAATAGGG +
Preference number: 4 (lower is better)
Translates to: FHFTLWNLLENSPPMPQAMCLAY*AKNIIG
Trigger: CCCTATTATATTCTTGGCTCAGTACGCTAAACACAT...GGCCTGAGGCATAGGAGGGGAATTCTCTAACAAGTTCCAAAGAGTAAAATGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAGGATTGTGTGCGTTTaGAGCTTTGACAGTAACTTC +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWRIVCV*SFDSNF
Trigger: GAAGTTACTGTCAAAGCTTCAAACGCACACAATCCT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTTCACCACAGGCCGGCTaGCATAGTTATTCACCAACA +
Preference number: 4 (lower is better)
Translates to: VWNADLILQLKVKIGGRFSPQAG*HSYSPT
Trigger: TGTTGGTGAATAACTATGGCAGCCGGCCTGTGGTGA...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGGCTCTATCACGCTGTTaGTGTAAGAAGCCAAGATCA +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKALSRC*CKKPRS
Trigger: TGATCTTGGCTTCTTACAGCAACAGCGTGATAGAGC...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTCATGGCGCAGCCATTTaGAAGTGGTCGTCTTCTATA +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIHGAAI*KWSSSI
Trigger: TATAGAAGACGACCACTTGCAAATGGCTGCGCCATG...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp CTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTACACCAGCCACACAGGAGTaGAAAAATATACCTCCCAAA +
Preference number: 4 (lower is better)
Translates to: LLNVAHLIDKYHLIDQTTPATQE*KNIPPK
Trigger: TTTGGGAGGTATATTTTTGCACTCCTGTGTGGCTGG...TGTAGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAGACTTCTTAGTATTTaGACTTGGCCCAACAGGTCT +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWRLLSI*TWPNRS
Trigger: AGACCTGTTGGGCCAAGTCCAAATACTAAGAAGTCT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CAA 72 bp CTCCTAAAGTACCCTGAACAACAATTCTCTGCCATGTaGCTACTGTGTTATAAACTACATGTCTGTCAGTCC +
Preference number: 4 (lower is better)
Translates to: LLKYPEQQFSAM*LLCYKLHVCQS
Trigger: GGACTGACAGACATGTAGTTTATAACACAGTAGCAACATGGCAGAGAATTGTTGTTCAGGGTACTTTAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTGACTGGAGGTGGTGTTaGATATTTCCTGGATGTCTT +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIDWRWC*IFPGCL
Trigger: AAGACATCCAGGAAATATTCAACACCACCTCCAGTC...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTGATATCCAAGCGATCTaGCTGGAGGTGGTGTTGAAT +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLDIQAI*LEVVLN
Trigger: ATTCAACACCACCTCCAGTCAGATCGCTTGGATATC...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTTGTTAAATAGGTACTaGTTGAAAGGAGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWLLNRY*LKGASV
Trigger: CACACTGGCTCCTTTCAATCAGTACCTATTTAACAA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGATGTGTTTAGCGTACTaGGCCAAGAATATAATAGGG +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWMCLAY*AKNIIG
Trigger: CCCTATTATATTCTTGGCTCAGTACGCTAAACACAT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGAGGATTGTGTGCGTTTaGAGCTTTGACAGTAACTTC +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKRIVCV*SFDSNF
Trigger: GAAGTTACTGTCAAAGCTTCAAACGCACACAATCCT...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp TTCCTGCTGAATGTTGCTCACCTTATTGACAAGTATCACCTTATTGACCAGACTAGGATTGTGTGCGTTTaGAGCTTTGACAGTAACTTC +
Preference number: 4 (lower is better)
Translates to: FLLNVAHLIDKYHLIDQTRIVCV*SFDSNF
Trigger: GAAGTTACTGTCAAAGCTTCAAACGCACACAATCCT...AGTCTGGTCAATAAGGTGATACTTGTCAATAAGGTGAGCAACATTCAGCAGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAATCACCACAGGCCGGCTaGCATAGTTATTCACCAACA +
Preference number: 4 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQSPQAG*HSYSPT
Trigger: TGTTGGTGAATAACTATGGCAGCCGGCCTGTGGTGA...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGATTGTTAAGGCTGGTTaGAGGTTGAATGCTAATCCT +
Preference number: 4 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWIVKAG*RLNANP
Trigger: AGGATTAGCATTCAACCTGCAACCAGCCTTAACAAT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTCATGGCGCAGCCATTTaGAAGTGGTCGTCTTCTATA +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLHGAAI*KWSSSI
Trigger: TATAGAAGACGACCACTTGCAAATGGCTGCGCCATG...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGAGACTTCTTAGTATTTaGACTTGGCCCAACAGGTCT +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKRLLSI*TWPNRS
Trigger: AGACCTGTTGGGCCAAGTCCAAATACTAAGAAGTCT...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTAGGGGGCATAAGAGATaGCATATGCCAGTAAAGATG +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIRGHKR*HMPVKM
Trigger: CATCTTTACTGGCATATGCCATCTCTTATGCCCCCT...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp AATATACAGTTTCACTCTGCAACCCATTCCCCTCAGGAACTCTTTCATTATAGTAGGGGGCATAAGAGATaGCATATGCCAGTAAAGATG +
Preference number: 4 (lower is better)
Translates to: NIQFHSATHSPQELFHYSRGHKR*HMPVKM
Trigger: CATCTTTACTGGCATATGCCATCTCTTATGCCCCCT...ACTATAATGAAAGAGTTCCTGAGGGGAATGGGTTGCAGAGTGAAACTGTATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTGACTGGAGGTGGTGTTaGATATTTCCTGGATGTCTT +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLDWRWC*IFPGCL
Trigger: AAGACATCCAGGAAATATTCAACACCACCTCCAGTC...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATTTGTTAAATAGGTACTaGTTGAAAGGAGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYLLNRY*LKGASV
Trigger: CACACTGGCTCCTTTCAATCAGTACCTATTTAACAA...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTGCTCTATCACGCTGTTaGTGTAAGAAGCCAAGATCA +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLALSRC*CKKPRS
Trigger: TGATCTTGGCTTCTTACAGCAACAGCGTGATAGAGC...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTGTTAAGGCTGGTTaGAGGTTGAATGCTAATCCT +
Preference number: 4 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKIVKAG*RLNANP
Trigger: AGGATTAGCATTCAACCTGCAACCAGCCTTAACAAT...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp TCATTAAAGCAGCAAATATTTCAACAGGTGCAGTGGACAAATACAAGCAAACAACATGGCGCAGCCATTTaGAAGTGGTCGTCTTCTATA +
Preference number: 4 (lower is better)
Translates to: SLKQQIFQQVQWTNTSKQHGAAI*KWSSSI
Trigger: TATAGAAGACGACCACTTGCAAATGGCTGCGCCATG...TTGTTTGCTTGTATTTGTCCACTGCACCTGTTGAAATATTTGCTGCTTTAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTCCAGCCACACAGGAGTaGAAAAATATACCTCCCAAA +
Preference number: 4 (lower is better)
Translates to: VWNADLILQLKVKIGGRFPATQE*KNIPPK
Trigger: TTTGGGAGGTATATTTTTGCACTCCTGTGTGGCTGG...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTAGGGGGCATAAGAGATaGCATATGCCAGTAAAGATG +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLRGHKR*HMPVKM
Trigger: CATCTTTACTGGCATATGCCATCTCTTATGCCCCCT...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CAA 72 bp GACACACACGTTAGGTCAGTAGTCTTTCCTCGGTCTTaGAAAGGCTTCATTAAAGCAGCAAATATTTCAACA +
Preference number: 4 (lower is better)
Translates to: DTHVRSVVFPRS*KGFIKAANIST
Trigger: TGTTGAAATATTTGCTGCTTTAATGAAGCCTTTCAAAGACCGAGGAAAGACTACTGACCTAACGTGTGTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTTGTTAAATAGGTACTaGTTGAAAGGAGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: GLECRSNSAAKSKNRWKILLNRY*LKGASV
Trigger: CACACTGGCTCCTTTCAATCAGTACCTATTTAACAA...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTAGACTTCTTAGTATTTaGACTTGGCCCAACAGGTCT +
Preference number: 4 (lower is better)
Translates to: VWNADLILQLKVKIGGRFRLLSI*TWPNRS
Trigger: AGACCTGTTGGGCCAAGTCCAAATACTAAGAAGTCT...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
3UTR CAA 72 bp CCTATAGTAAATGGCCCTAGTGACTATAGCAAACACTaGTTTAGGCAGAATACCATTTCTTGCAATTTGCCA +
Preference number: 4 (lower is better)
Translates to: PIVNGPSDYSKH*FRQNTISCNLP
Trigger: TGGCAAATTGCAAGAAATGGTATTCTGCCTAAACAAGTGTTTGCTATAGTCACTAGGGCCATTTACTATAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTTTGTTAAATAGGTACTaGTTGAAAGGAGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLLLNRY*LKGASV
Trigger: CACACTGGCTCCTTTCAATCAGTACCTATTTAACAA...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTATGTGTTTAGCGTACTaGGCCAAGAATATAATAGGG +
Preference number: 4 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLMCLAY*AKNIIG
Trigger: CCCTATTATATTCTTGGCTCAGTACGCTAAACACAT...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR TCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTATGTGTTTAGCGTACTaGGCCAAGAATATAATAGGG +
Preference number: 4 (lower is better)
Translates to: VWNADLILQLKVKIGGRFMCLAY*AKNIIG
Trigger: CCCTATTATATTCTTGGCTCAGTACGCTAAACACAT...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR GCA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTATTGTTAAGGCTGGTTaGAGGTTGAATGCTAATCCT +
Preference number: 4 (lower is better)
Translates to: VWNADLILQLKVKIGGRFIVKAG*RLNANP
Trigger: AGGATTAGCATTCAACCTGCAACCAGCCTTAACAAT...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CCA 90 bp AGTTATATCAAGCAATTTACCAGCCAGAGGAGGGCCGAAAAGAACTaGACAACACTCCACGATTGTTGTGAGTCCCACAGCACTGGAGAA +
Preference number: 5 (lower is better)
Translates to: SYIKQFTSQRRAEKN*TTLHDCCESHSTGE
Trigger: TTCTCCAGTGCTGTGGGACTCACAACAATCGTGGAGTGTTGTCCAGTTCTTTTCGGCCCTCCTCTGGCTGGTAAATTGCTTGATATAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CCA 90 bp AGATGGCATATGCCAGTAAAGATGATTGCAGAGCTGAAGAGGTACTaGATTCGTGGACGGATTAAGCTAGTGTTGGCTATTAATCCTACA +
Preference number: 5 (lower is better)
Translates to: RWHMPVKMIAELKRY*IRGRIKLVLAINPT
Trigger: TGTAGGATTAATAGCCAACACTAGCTTAATCCGTCCACGAATCCAGTACCTCTTCAGCTCTGCAATCATCTTTACTGGCATATGCCATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGGCTGGTTGCAGGTaGAATGCTAATCCTAAACCT +
Preference number: 5 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWKAGCR*NANPKP
Trigger: AGGTTTAGGATTAGCATTCAACCTGCAACCAGCCTT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTGTGCGTTTGAAGCTTaGACAGTAACTTCGTCCTGT +
Preference number: 5 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWCAFEA*TVTSSC
Trigger: ACAGGACGAAGTTACTGTCAAAGCTTCAAACGCACA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATAAGGCTGGTTGCAGGTaGAATGCTAATCCTAAACCT +
Preference number: 5 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYKAGCR*NANPKP
Trigger: AGGTTTAGGATTAGCATTCAACCTGCAACCAGCCTT...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGTGGCTTTCTTCAGAGTaGAATCATGTCTTGAGCCAA +
Preference number: 5 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWWLSSE*NHVLSQ
Trigger: TTGGCTCAAGACATGATTCAACTCTGAAGAAAGCCA...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATTGTGCGTTTGAAGCTTaGACAGTAACTTCGTCCTGT +
Preference number: 5 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYCAFEA*TVTSSC
Trigger: ACAGGACGAAGTTACTGTCAAAGCTTCAAACGCACA...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGATTTCCTGGATGTCTTaGAAGAATACTGTGACAGCT +
Preference number: 5 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWISWMS*KNTVTA
Trigger: AGCTGTCACAGTATTCTTCAAAGACATCCAGGAAAT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTAAGGCTGGTTGCAGGTaGAATGCTAATCCTAAACCT +
Preference number: 5 (lower is better)
Translates to: GLECRSNSAAKSKNRWKIKAGCR*NANPKP
Trigger: AGGTTTAGGATTAGCATTCAACCTGCAACCAGCCTT...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTGTGGTGGTTTGCTCAGTGGTCATCAAAATACATAGAGAGCAAAACACAGTATTGGCTTTCTTCAGAGTaGAATCATGTCTTGAGCCAA +
Preference number: 5 (lower is better)
Translates to: VWWFAQWSSKYIESKTQYWLSSE*NHVLSQ
Trigger: TTGGCTCAAGACATGATTCAACTCTGAAGAAAGCCA...ATACTGTGTTTTGCTCTCTATGTATTTTGATGACCACTGAGCAAACCACCACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTGTGCGTTTGAAGCTTaGACAGTAACTTCGTCCTGT +
Preference number: 5 (lower is better)
Translates to: GLECRSNSAAKSKNRWKICAFEA*TVTSSC
Trigger: ACAGGACGAAGTTACTGTCAAAGCTTCAAACGCACA...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGAATACTGTGACAGCTTaGGGGAAGGCATATGAAAAT +
Preference number: 5 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKNTVTA*GKAYEN
Trigger: ATTTTCATATGCCTTCCCCAAAGCTGTCACAGTATT...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTAAGGCTGGTTGCAGGTaGAATGCTAATCCTAAACCT +
Preference number: 5 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLKAGCR*NANPKP
Trigger: AGGTTTAGGATTAGCATTCAACCTGCAACCAGCCTT...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp AGCCAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAGTATTTTCCAATTATaGTTAAGGCTGGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: SQGLECRSNSAAKSKNRWSIFQL*LRLVAG
Trigger: ACCTGCAACCAGCCTTAACAATAATTGGAAAATACT...CCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTTGTGCGTTTGAAGCTTaGACAGTAACTTCGTCCTGT +
Preference number: 5 (lower is better)
Translates to: VWNADLILQLKVKIGGRFCAFEA*TVTSSC
Trigger: ACAGGACGAAGTTACTGTCAAAGCTTCAAACGCACA...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTAATACTGTGACAGCTTaGGGGAAGGCATATGAAAAT +
Preference number: 5 (lower is better)
Translates to: GLECRSNSAAKSKNRWKINTVTA*GKAYEN
Trigger: ATTTTCATATGCCTTCCCCAAAGCTGTCACAGTATT...AATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp CAAGGTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGAGTATTTTCCAATTATaGTTAAGGCTGGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: QGLECRSNSAAKSKNRWKSIFQL*LRLVAG
Trigger: ACCTGCAACCAGCCTTAACAATAATTGGAAAATACT...CTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGACCTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTTGGCTTTCTTCAGAGTaGAATCATGTCTTGAGCCAA +
Preference number: 5 (lower is better)
Translates to: VWNADLILQLKVKIGGRFWLSSE*NHVLSQ
Trigger: TTGGCTCAAGACATGATTCAACTCTGAAGAAAGCCA...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTAATACTGTGACAGCTTaGGGGAAGGCATATGAAAAT +
Preference number: 5 (lower is better)
Translates to: VWNADLILQLKVKIGGRFNTVTA*GKAYEN
Trigger: ATTTTCATATGCCTTCCCCAAAGCTGTCACAGTATT...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GCTTCTAAAGCATGGATTCATCCGATTTTTCAGTGTCTCTGCATTTTAAATCAAAATACTGTGACAGCTTaGGGGAAGGCATATGAAAAT +
Preference number: 5 (lower is better)
Translates to: ASKAWIHPIFQCLCILNQNTVTA*GKAYEN
Trigger: ATTTTCATATGCCTTCCCCAAAGCTGTCACAGTATT...TTGATTTAAAATGCAGAGACACTGAAAAATCGGATGAATCCATGCTTTAGAAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp CACACAAAGAAACTCATGATTAAATTCATGAACACTGATTCGGCGATGAGACTTAGTATTTTCCAATTATaGTTAAGGCTGGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: HTKKLMIKFMNTDSAMRLSIFQL*LRLVAG
Trigger: ACCTGCAACCAGCCTTAACAATAATTGGAAAATACT...AAGTCTCATCGCCGAATCAGTGTTCATGAATTTAATCATGAGTTTCTTTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS-3UTR CAA 90 bp GTCTGGAATGCAGATCTAATTCTGCAGCTAAAAGTAAAAATCGGTGGAAGATTTAGTATTTTCCAATTATaGTTAAGGCTGGTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: VWNADLILQLKVKIGGRFSIFQL*LRLVAG
Trigger: ACCTGCAACCAGCCTTAACAATAATTGGAAAATACT...AAATCTTCCACCGATTTTTACTTTTAGCTGCAGAATTAGATCTGCATTCCAGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CCA 72 bp AAGCAATTTACCAGCCAGAGGAGGGCCGAAAAGAACTaGACAACACTCCACGATTGTTGTGAGTCCCACAGC +
Preference number: 6 (lower is better)
Translates to: KQFTSQRRAEKN*TTLHDCCESHS
Trigger: GCTGTGGGACTCACAACAATCGTGGAGTGTTGTCCAGTTCTTTTCGGCCCTCCTCTGGCTGGTAAATTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CCA 72 bp GCCAACCTTACTTTTAGACTTCTTAGTATTTGGACTTaGCCCAACAGGTCTCATGAGGCACCCAGCCACACA +
Preference number: 6 (lower is better)
Translates to: ANLTFRLLSIWT*PNRSHEAPSHT
Trigger: TGTGTGGCTGGGTGCCTCATGAGACCTGTTGGGCCAAGTCCAAATACTAAGAAGTCTAAAAGTAAGGTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CAA 90 bp GGGCCTCCATTTCTCTGGACGCGTGTGAAGCTGACTTCTTCTTCTTaGCCTTCTCTCTCTTCCTTTCCTTGTCGAGAAGTCTATAGTTTA +
Preference number: 6 (lower is better)
Translates to: GPPFLWTRVKLTSSS*PSLSSFPCREVYSL
Trigger: TAAACTATAGACTTCTCGACAAGGAAAGGAAGAGAGAGAAGGCAAAGAAGAAGAAGTCAGCTTCACACGCGTCCAGAGAAATGGAGGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CAA 72 bp TCCCTGTCTGAGGGAGGATTGTGTGCGTTTGAAGCTTaGACAGTAACTTCGTCCTGTTTAGATCTGTTCAGG +
Preference number: 6 (lower is better)
Translates to: SLSEGGLCAFEA*TVTSSCLDLFR
Trigger: CCTGAACAGATCTAAACAGGACGAAGTTACTGTCAAAGCTTCAAACGCACACAATCCTCCCTCAGACAGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CAA 72 bp AAGAGGTACTGGATTCGTGGACGGATTAAGCTAGTGTaGGCTATTAATCCTACAGAAGGCCGAGCAAACATA +
Preference number: 6 (lower is better)
Translates to: KRYWIRGRIKLV*AINPTEGRANI
Trigger: TATGTTTGCTCGGCCTTCTGTAGGATTAATAGCCAACACTAGCTTAATCCGTCCACGAATCCAGTACCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CAA 90 bp GCAGAGCTGAAGAGGTACTGGATTCGTGGACGGATTAAGCTAGTGTaGGCTATTAATCCTACAGAAGGCCGAGCAAACATATCAATAAAA +
Preference number: 6 (lower is better)
Translates to: AELKRYWIRGRIKLV*AINPTEGRANISIK
Trigger: TTTTATTGATATGTTTGCTCGGCCTTCTGTAGGATTAATAGCCAACACTAGCTTAATCCGTCCACGAATCCAGTACCTCTTCAGCTCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CCA 72 bp AACAGGACTTCCAGCCATGGCGCAGCCATTTGCAAGTaGTCGTCTTCTATAGAAGTATTTTCCAATTATTGT +
Preference number: 6 (lower is better)
Translates to: NRTSSHGAAICK*SSSIEVFSNYC
Trigger: ACAATAATTGGAAAATACTTCTATAGAAGACGACCACTTGCAAATGGCTGCGCCATGGCTGGAAGTCCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CAA 90 bp CCAGTGTGCTTAAGAAAACAGGACTTCCAGCCATGGCGCAGCCATTaGCAAGTGGTCGTCTTCTATAGAAGTATTTTCCAATTATTGTTA +
Preference number: 6 (lower is better)
Translates to: PVCLRKQDFQPWRSH*QVVVFYRSIFQLLL
Trigger: TAACAATAATTGGAAAATACTTCTATAGAAGACGACCACTTGCAAATGGCTGCGCCATGGCTGGAAGTCCTGTTTTCTTAAGCACACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CCA 72 bp GGAGGTAAGTACCTGATACTAACACGACTGTTCCGCTaGCTATGTACAGGTATTTATATTCTCCAGTTATAT +
Preference number: 6 (lower is better)
Translates to: GGKYLILTRLFR*LCTGIYILQLY
Trigger: ATATAACTGGAGAATATAAATACCTGTACATAGCCAGCGGAACAGTCGTGTTAGTATCAGGTACTTACCTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2
CDS CAA 72 bp AAGTATTTTCCAATTATTGTTAAGGCTGGTTGCAGGTaGAATGCTAATCCTAAACCTCCAATGAAGCCAACG +
Preference number: 6 (lower is better)
Translates to: KYFPIIVKAGCR*NANPKPPMKPT
Trigger: CGTTGGCTTCATTGGAGGTTTAGGATTAGCATTCAACCTGCAACCAGCCTTAACAATAATTGGAAAATACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063318.10
ENSMUST00000105257.4
ENSMUST00000210780.2
ENSMUST00000211781.2