RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC16A14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026220

Ensembl transcript IDs: ENSMUST00000027422.7, ENSMUST00000186980.2

Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTGGAACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTaGGAACTGAATTCTGGTCCTTTGCAAGAGCAGCAAGCACCTCCT +
Preference number: 1 (lower is better)
Translates to: PGTGVTGGCEPTCGC*ELNSGPLQEQQAPP
Trigger: AGGAGGTGCTTGCTGCTCTTGCAAAGGACCAGAATTCAGTTCCCAGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGTTCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR TCA 90 bp CCTAACCTCTTAGCCATTCCTCCAGTCCACAGACTACACTGCTTTTaGAATGATAACCTGCCTTTGCATGATACCAGCAGACCACCACCT +
Preference number: 1 (lower is better)
Translates to: PNLLAIPPVHRLHCF*NDNLPLHDTSRPPP
Trigger: AGGTGGTGGTCTGCTGGTATCATGCAAAGGCAGGTTATCATTTCAAAAGCAGTGTAGTCTGTGGACTGGAGGAATGGCTAAGAGGTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR GCA 90 bp CCATTCCTCCAGTCCACAGACTACACTGCTTTTGAAATGATAACCTaGCTTTGCATGATACCAGCAGACCACCACCTTGTAAGAATTTAC +
Preference number: 1 (lower is better)
Translates to: PFLQSTDYTAFEMIT*LCMIPADHHLVRIY
Trigger: GTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAAAGGCAGGTTATCATTTCAAAAGCAGTGTAGTCTGTGGACTGGAGGAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR TCA 90 bp GAGACTAAGGATATCACTCATAGACCACATGGGAAGGATGTGTGCTaGGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACT +
Preference number: 1 (lower is better)
Translates to: ETKDITHRPHGKDVC*VQFMADIIFHDTVT
Trigger: AGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACATCCTTCCCATGTGGTCTATGAGTGATATCCTTAGTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR GCA 90 bp CTCCAGTCCACAGACTACACTGCTTTTGAAATGATAACCTGCCTTTaGATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACT +
Preference number: 1 (lower is better)
Translates to: LQSTDYTAFEMITCL*MIPADHHLVRIYKT
Trigger: AGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAAAGGCAGGTTATCATTTCAAAAGCAGTGTAGTCTGTGGACTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR CCA 90 bp ATTTACAAAACTCAGTCATACTCTCGTGTTCAAAGCCCACATATCTaGACCTTCTGTGGAAACACAGACACTTGGGTTTTACCTTACAAA +
Preference number: 1 (lower is better)
Translates to: IYKTQSYSRVQSPHI*TFCGNTDTWVLPYK
Trigger: TTTGTAAGGTAAAACCCAAGTGTCTGTGTTTCCACAGAAGGTCCAGATATGTGGGCTTTGAACACGAGAGTATGACTGAGTTTTGTAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR TCA 90 bp CCTGATCCCCTGGAACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTCCTCTAGGAGCCAGGTaGGGTAGGCACGAGGAGGGA +
Preference number: 2 (lower is better)
Translates to: PDPLELELQVGVNQHVGAPLGAR*GRHEEG
Trigger: TCCCTCCTCGTGCCTACCTCACCTGGCTCCTAGAGG...AGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGTTCCAGGGGATCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR TCA 90 bp CACATGGGAAGGATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGCCAGAAGAGGGTGCCTaGTCCCCTGGAACTGGAGTT +
Preference number: 2 (lower is better)
Translates to: HMGRMCAEFSLWLTSSSMPEEGA*SPGTGV
Trigger: AACTCCAGTTCCAGGGGATCAGGCACCCTCTTCTGG...CATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACATCCTTCCCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR TCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGAGTTACAGGTGGGTGTaGACCAACATGTGGGTGCTG +
Preference number: 2 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLSYRWV*TNMWVL
Trigger: CAGCACCCACATGTTGGTTCACACCCACCTGTAACT...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR CCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACGGGTGCCTGATCCCCTaGAACTGGAGTTACAGGTGG +
Preference number: 2 (lower is better)
Translates to: NFKCMGVLSECMYACHIDGCLIP*NWSYRW
Trigger: CCACCTGTAACTCCAGTTCCAGGGGATCAGGCACCC...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR GCA 90 bp ACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTGGGAACTGAATTCTTTTGAAATGATAACCTaGCTTTGCATGATACCAGCA +
Preference number: 2 (lower is better)
Translates to: TGVTGGCEPTCGCWELNSFEMIT*LCMIPA
Trigger: TGCTGGTATCATGCAAAGGCAGGTTATCATTTCAAA...AGAATTCAGTTCCCAGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR GCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGGAGTGTATGTATGCATaGCACATAGACCAGAAGAGG +
Preference number: 2 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLECMYA*HIDQKR
Trigger: CCTCTTCTGGTCTATGTGGCATGCATACATACACTC...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR GCA 90 bp CACATGGGAAGGATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGAAGAAGTGGGTGAGTTaGAGTGTTTTTATTTCCAGT +
Preference number: 2 (lower is better)
Translates to: HMGRMCAEFSLWLTSSSMKKWVS*SVFISS
Trigger: ACTGGAAATAAAAACACTGCAACTCACCCACTTCTT...CATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACATCCTTCCCATGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR CCA 90 bp AGTCATACTCTCGTGTTCAAAGCCCACATATCTGGACCTTCTGTGGAAACACAGATTTGCCAACATGCCTaGCTTGAAAGTTTTCATAAG +
Preference number: 2 (lower is better)
Translates to: SHTLVFKAHISGPSVETQICQHA*LESFHK
Trigger: CTTATGAAAACTTTCAAGCCAGGCATGTTGGCAAAT...CTGTGTTTCCACAGAAGGTCCAGATATGTGGGCTTTGAACACGAGAGTATGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR CCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACTATCTGGACCTTCTGTaGAAACACAGACACTTGGGT +
Preference number: 2 (lower is better)
Translates to: NFKCMGVLSECMYACHIDYLDLL*KHRHLG
Trigger: ACCCAAGTGTCTGTGTTTCCACAGAAGGTCCAGATA...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR TCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACAGACTACACTGCTTTTaGAATGATAACCTGCCTTTG +
Preference number: 2 (lower is better)
Translates to: NFKCMGVLSECMYACHIDRLHCF*NDNLPL
Trigger: CAAAGGCAGGTTATCATTTCAAAAGCAGTGTAGTCT...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR TCA 72 bp CAGGTGGGTGTGAACCAACATGTGGGTGCTGGGAACTaGATTCTGGTCCTTTGCAAGAGCAGCAAGCACCTC +
Preference number: 3 (lower is better)
Translates to: QVGVNQHVGAGN*ILVLCKSSKHL
Trigger: GAGGTGCTTGCTGCTCTTGCAAAGGACCAGAATTCAGTTCCCAGCACCCACATGTTGGTTCACACCCACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR TCA 72 bp CCTAGTCTCAGTGAATGGAAAGAGGTAAGGAGAGGGTaGGAGAAAGGGAGGAGAGAGAGGAAGGAAGGGAGG +
Preference number: 3 (lower is better)
Translates to: PSLSEWKEVRRG*EKGRRERKEGR
Trigger: CCTCCCTTCCTTCCTCTCTCTCCTCCCTTTCTCTCACCCTCTCCTTACCTCTTTCCATTCACTGAGACTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR GCA 72 bp ACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTaGTGGGAACTGAATTCTGGTCCTTTGCAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: TGVTGGCEPTCG*WELNSGPLQEQ
Trigger: CTGCTCTTGCAAAGGACCAGAATTCAGTTCCCAGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR CCA 72 bp GGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTaGGAACTGAATTCTGGTCCTTTGCAAGAGCAGCAA +
Preference number: 3 (lower is better)
Translates to: GVTGGCEPTCGC*ELNSGPLQEQQ
Trigger: TTGCTGCTCTTGCAAAGGACCAGAATTCAGTTCCCAGCACCCACATGTTGGTTCACACCCACCTGTAACTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR CAA 90 bp CCTGATCCCCTGGAACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTAAAGAAGTGGGTGAGTaGCAGTGTTTTTATTTCCAG +
Preference number: 3 (lower is better)
Translates to: PDPLELELQVGVNQHVGAKEVGE*QCFYFQ
Trigger: CTGGAAATAAAAACACTGCAACTCACCCACTTCTTT...AGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGTTCCAGGGGATCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR GCA 72 bp AAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATaGCACATAGACCAGAAGAGGGTGCCTGATCCCCTG +
Preference number: 3 (lower is better)
Translates to: KCMGVLSECMYA*HIDQKRVPDPL
Trigger: CAGGGGATCAGGCACCCTCTTCTGGTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR CAA 90 bp AGTCATACTCTCGTGTTCAAAGCCCACATATCTGGACCTTCTGTGGAAACACAGGCCAACATGCCTGGCTaGAAAGTTTTCATAAGGGCA +
Preference number: 3 (lower is better)
Translates to: SHTLVFKAHISGPSVETQANMPG*KVFIRA
Trigger: TGCCCTTATGAAAACTTTCAAGCCAGGCATGTTGGC...CTGTGTTTCCACAGAAGGTCCAGATATGTGGGCTTTGAACACGAGAGTATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR CCA 72 bp GACCACATGGGAAGGATGTGTGCTGAGTTCAGTTTATaGCTGACATCATCTTCCATGACACAGTTACTGAGT +
Preference number: 3 (lower is better)
Translates to: DHMGRMCAEFSL*LTSSSMTQLLS
Trigger: ACTCAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACATCCTTCCCATGTGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR TCA 72 bp TTAGCCATTCCTCCAGTCCACAGACTACACTGCTTTTaGAATGATAACCTGCCTTTGCATGATACCAGCAGA +
Preference number: 3 (lower is better)
Translates to: LAIPPVHRLHCF*NDNLPLHDTSR
Trigger: TCTGCTGGTATCATGCAAAGGCAGGTTATCATTTCAAAAGCAGTGTAGTCTGTGGACTGGAGGAATGGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR GCA 72 bp ACAGACTACACTGCTTTTGAAATGATAACCTGCCTTTaGATGATACCAGCAGACCACCACCTTGTAAGAATT +
Preference number: 3 (lower is better)
Translates to: TDYTAFEMITCL*MIPADHHLVRI
Trigger: AATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAAAGGCAGGTTATCATTTCAAAAGCAGTGTAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
3UTR-3UTR CAA 90 bp TTGCATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACTCAGTCATATGGAAACACAGACACTaGGGTTTTACCTTACAAAGA +
Preference number: 3 (lower is better)
Translates to: LHDTSRPPPCKNLQNSVIWKHRH*GFTLQR
Trigger: TCTTTGTAAGGTAAAACCCAAGTGTCTGTGTTTCCA...TATGACTGAGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR GCA 90 bp CCTGATCCCCTGGAACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTCAGGCCTCCAATGATTaGTGTCTGGCGGCACCCGCA +
Preference number: 4 (lower is better)
Translates to: PDPLELELQVGVNQHVGAQASND*CLAAPA
Trigger: TGCGGGTGCCGCCAGACAGCAATCATTGGAGGCCTG...AGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGTTCCAGGGGATCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp CACATGGGAAGGATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGCCATGCTCAGGGAGCTaGCCCAGGCGGTCAGGCCGC +
Preference number: 4 (lower is better)
Translates to: HMGRMCAEFSLWLTSSSMPCSGS*PRRSGR
Trigger: GCGGCCTGACCGCCTGGGTCAGCTCCCTGAGCATGG...CATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACATCCTTCCCATGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp CTCTGCAGAGAGGCCACACTGCTTACAGATGAAGCGATGACAATGCCATTCATAGAGAGAGGGGCCTCATaGGCGCCCCACAGACACACA +
Preference number: 4 (lower is better)
Translates to: LCREATLLTDEAMTMPFIERGAS*APHRHT
Trigger: TGTGTGTCTGTGGGGCGCTCATGAGGCCCCTCTCTC...TATGAATGGCATTGTCATCGCTTCATCTGTAAGCAGTGTGGCCTCTCTGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp TGCATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACTCAGTCATACCTGTCCCCGTGGTACTaGGGCCCTGGGCCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: CMIPADHHLVRIYKTQSYLSPWY*GPGPGL
Trigger: GAGCCCTGGCCCAGGGCCTCAGTACCACGGGGACAG...GTATGACTGAGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CCA 90 bp CCTGATCCCCTGGAACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTACTTGCACAGTGAGCTaGCTCACTGTCTTCAGAACC +
Preference number: 4 (lower is better)
Translates to: PDPLELELQVGVNQHVGATCTVS*LTVFRT
Trigger: GGTTCTGAAGACAGTGAGCCAGCTCACTGTGCAAGT...AGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGTTCCAGGGGATCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CCA 90 bp CTCTGCAGAGAGGCCACACTGCTTACAGATGAAGCGATGACAATGCCATTCATACCCGCCATCGATATCTaGGTGGGGCTTCAGCGTCTT +
Preference number: 4 (lower is better)
Translates to: LCREATLLTDEAMTMPFIPAIDI*VGLQRL
Trigger: AAGACGCTGAAGCCCCACCCAGATATCGATGGCGGG...TATGAATGGCATTGTCATCGCTTCATCTGTAAGCAGTGTGGCCTCTCTGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGGTGGTACTGAGGCCCTaGGCCAGGGCTCGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLVVLRP*ARARLF
Trigger: GAAGAGACGAGCCCTGGCCCAGGGCCTCAGTACCAC...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR GCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGGGTAAGCCATCCCACTaGCAAGGCCTGCTGCCACTC +
Preference number: 4 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLGKPSH*QGLLPL
Trigger: GAGTGGCAGCAGGCCTTGGCAGTGGGATGGCTTACC...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp CCTGATCCCCTGGAACTGGAGTTACAGGTGGGTGTGAACCAACATGTGGGTGCTTGTGTCATTTTGCTCTaGCAAGTTATACAAACTGAC +
Preference number: 4 (lower is better)
Translates to: PDPLELELQVGVNQHVGACVILL*QVIQTD
Trigger: GTCAGTTTGTATAACTTGTCAGAGCAAAATGACACA...AGCACCCACATGTTGGTTCACACCCACCTGTAACTCCAGTTCCAGGGGATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACTCACCAGGCCTCCAATaGTTGCTGTCTGGCGGCACC +
Preference number: 4 (lower is better)
Translates to: NFKCMGVLSECMYACHIDSPGLQ*LLSGGT
Trigger: GGTGCCGCCAGACAGCAATCATTGGAGGCCTGGTGA...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CCA 90 bp AGTCATACTCTCGTGTTCAAAGCCCACATATCTGGACCTTCTGTGGAAACACAGACGATTTCGGGCAGGTaGATGAAAGGGATGACAAAG +
Preference number: 4 (lower is better)
Translates to: SHTLVFKAHISGPSVETQTISGR*MKGMTK
Trigger: CTTTGTCATCCCTTTCATCCACCTGCCCGAAATCGT...CTGTGTTTCCACAGAAGGTCCAGATATGTGGGCTTTGAACACGAGAGTATGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACCAAGCCACTCCACGTTaGGGACTCCTAGGGCCATCT +
Preference number: 4 (lower is better)
Translates to: NFKCMGVLSECMYACHIDQATPR*GLLGPS
Trigger: AGATGGCCCTAGGAGTCCTCAACGTGGAGTGGCTTG...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp AGTCATACTCTCGTGTTCAAAGCCCACATATCTGGACCTTCTGTGGAAACACAGACAAGTTATACAAACTaGCGATTTCGGGCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: SHTLVFKAHISGPSVETQTSYTN*RFRAGG
Trigger: TCCACCTGCCCGAAATCGTCAGTTTGTATAACTTGT...CTGTGTTTCCACAGAAGGTCCAGATATGTGGGCTTTGAACACGAGAGTATGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp TTGCATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACTCAGTCATAAGTACCTTCCCACCATaGCCACTGCAGGTAGGTAAG +
Preference number: 4 (lower is better)
Translates to: LHDTSRPPPCKNLQNSVISTFPP*PLQVGK
Trigger: CTTACCTACCTGCAGTGGTCATGGTGGGAAGGTACT...TATGACTGAGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR GCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACCCTGTTCTTCAGCCATaGCCAGTGGTCCTCCAGACT +
Preference number: 4 (lower is better)
Translates to: NFKCMGVLSECMYACHIDPVLQP*PVVLQT
Trigger: AGTCTGGAGGACCACTGGGCATGGCTGAAGAACAGG...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR GCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGCATGTGCACCCTCTATaGACTTCCTTCTGGATTGAT +
Preference number: 4 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLHVHPL*TSFWID
Trigger: ATCAATCCAGAAGGAAGTGCATAGAGGGTGCACATG...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGACCTTCCCGAAGATGTaGAGTATTGCTATAATCGAG +
Preference number: 4 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLTFPKM*SIAIIE
Trigger: CTCGATTATAGCAATACTTCACATCTTCGGGAAGGT...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR GCA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACCCGCCAGCCATATTCTaGGCACAGGTATTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: NFKCMGVLSECMYACHIDPPAIF*AQVFQQ
Trigger: TTGCTGAAATACCTGTGCGCAGAATATGGCTGGCGG...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp TGCATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACTCAGTCATACGAATACACGGTTGAATaGGCAAAAAGAGTATCCCTA +
Preference number: 4 (lower is better)
Translates to: CMIPADHHLVRIYKTQSYEYTVE*AKRVSL
Trigger: TAGGGATACTCTTTTTGCTCATTCAACCGTGTATTC...GTATGACTGAGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR TCA 90 bp TTGCATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACTCAGTCATAAGTCATATTTTTGGGTaGTGTCAAAGATCCATCCTG +
Preference number: 4 (lower is better)
Translates to: LHDTSRPPPCKNLQNSVISHIFG*CQRSIL
Trigger: CAGGATGGATCTTTGACATCACCCAAAAATATGACT...TATGACTGAGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR GCA 90 bp ATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGACACAGTTACTGGGGAATGTGTCATTTTaGTCTGACAAGTTATACAAA +
Preference number: 4 (lower is better)
Translates to: MCAEFSLWLTSSSMTQLLGNVSF*SDKLYK
Trigger: TTTGTATAACTTGTCAGAGCAAAATGACACATTCCC...CAGTAACTGTGTCATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 90 bp CCCATGCTCAGGGAGCTGACCCAGGCGGTCAGGCCGCGGCTCTGGTaGAACTCTTCAAGCCACTCCACGTTGAGGACTCCTAGGGCCATC +
Preference number: 5 (lower is better)
Translates to: PMLRELTQAVRPRLW*NSSSHSTLRTPRAI
Trigger: GATGGCCCTAGGAGTCCTCAACGTGGAGTGGCTTGAAGAGTTTCACCAGAGCCGCGGCCTGACCGCCTGGGTCAGCTCCCTGAGCATGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 90 bp GGCCCTGGGCCAGGGCTCGTCTCTTCTGAAAGTACCTTCCCACCATaGCCACTGCAGGTAGGTAAGCCATCCCACTGCCAAGGCCTGCTG +
Preference number: 5 (lower is better)
Translates to: GPGPGLVSSESTFPP*PLQVGKPSHCQGLL
Trigger: CAGCAGGCCTTGGCAGTGGGATGGCTTACCTACCTGCAGTGGTCATGGTGGGAAGGTACTTTCAGAAGAGACGAGCCCTGGCCCAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 90 bp GCAACACGGTCATCAGGAACGTCCCAAATCCTGTCCCCGTGGTACTaGGGCCCTGGGCCAGGGCTCGTCTCTTCTGAAAGTACCTTCCCA +
Preference number: 5 (lower is better)
Translates to: ATRSSGTSQILSPWY*GPGPGLVSSESTFP
Trigger: TGGGAAGGTACTTTCAGAAGAGACGAGCCCTGGCCCAGGGCCTCAGTACCACGGGGACAGGATTTGGGACGTTCCTGATGACCGTGTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CCA 90 bp CCTGAGTGCCAGTCCCTAAAGCCCCTCCGGACTTGCACAGTGAGCTaGCTCACTGTCTTCAGAACCCGGAAGGCACACACATTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: PECQSLKPLRTCTVS*LTVFRTRKAHTFFL
Trigger: GAGGAAGAATGTGTGTGCCTTCCGGGTTCTGAAGACAGTGAGCCAGCTCACTGTGCAAGTCCGGAGGGGCTTTAGGGACTGGCACTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CCA 90 bp GAAGGACGAGAGGACCATCATCCAGGCCCACCCGCCATCGATATCTaGGTGGGGCTTCAGCGTCTTCTTATTCTTAGCCTTTCGGTCGTC +
Preference number: 5 (lower is better)
Translates to: EGREDHHPGPPAIDI*VGLQRLLILSLSVV
Trigger: GACGACCGAAAGGCTAAGAATAAGAAGACGCTGAAGCCCCACCCAGATATCGATGGCGGGTGGGCCTGGATGATGGTCCTCTCGTCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027422.7
ENSMUST00000186980.2
CDS CCA 90 bp GACGAGAGGACCATCATCCAGGCCCACCCGCCATCGATATCTGGGTaGGGCTTCAGCGTCTTCTTATTCTTAGCCTTTCGGTCGTCTTCA +
Preference number: 5 (lower is better)
Translates to: DERTIIQAHPPSISG*GFSVFLFLAFRSSS
Trigger: TGAAGACGACCGAAAGGCTAAGAATAAGAAGACGCTGAAGCCCCACCCAGATATCGATGGCGGGTGGGCCTGGATGATGGTCCTCTCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027422.7
ENSMUST00000186980.2
CDS CCA 90 bp CTCCTCATTCCCGGGCCTTCTGTCCTGTTCTTCAGCCATGCCCAGTaGTCCTCCAGACTTAACAGATTCAGTGGAGTAAGCTGGGAGAGC +
Preference number: 5 (lower is better)
Translates to: LLIPGPSVLFFSHAQ*SSRLNRFSGVSWES
Trigger: GCTCTCCCAGCTTACTCCACTGAATCTGTTAAGTCTGGAGGACCACTGGGCATGGCTGAAGAACAGGACAGAAGGCCCGGGAATGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CCA 90 bp CTCATGAGCGCCCCACAGACACACAGGTTCAGGGACAGAGCACCTTaGATGAACATAGCATTCCGCCAGCCATATTCTGCGCACAGGTAT +
Preference number: 5 (lower is better)
Translates to: LMSAPQTHRFRDRAP*MNIAFRQPYSAHRY
Trigger: ATACCTGTGCGCAGAATATGGCTGGCGGAATGCTATGTTCATCCAAGGTGCTCTGTCCCTGAACCTGTGTGTCTGTGGGGCGCTCATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CAA 90 bp GACACACACAGTTCTAATCACGTCTGCCACCTCTGCAGAGAGGCCACACTGCTTCAGGGACAGAGCACCTaGGATGAACATAGCATTCCG +
Preference number: 5 (lower is better)
Translates to: DTHSSNHVCHLCREATLLQGQST*DEHSIP
Trigger: CGGAATGCTATGTTCATCCAAGGTGCTCTGTCCCTG...AAGCAGTGTGGCCTCTCTGCAGAGGTGGCAGACGTGATTAGAACTGTGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CAA 90 bp TTGCATGATACCAGCAGACCACCACCTTGTAAGAATTTACAAAACTCAGTCATACGGATGGGTTTGACCTaGACACTCCTGTGTTTGAAG +
Preference number: 5 (lower is better)
Translates to: LHDTSRPPPCKNLQNSVIRMGLT*TLLCLK
Trigger: CTTCAAACACAGGAGTGTCAAGGTCAAACCCATCCG...TATGACTGAGTTTTGTAAATTCTTACAAGGTGGTGGTCTGCTGGTATCATGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CAA 90 bp AGTCATACTCTCGTGTTCAAAGCCCACATATCTGGACCTTCTGTGGAAACACAGGCACTTCCTTCTGGATaGATCTATCATCTGAATACA +
Preference number: 5 (lower is better)
Translates to: SHTLVFKAHISGPSVETQALPSG*IYHLNT
Trigger: TGTATTCAGATGATAGATCAATCCAGAAGGAAGTGC...CTGTGTTTCCACAGAAGGTCCAGATATGTGGGCTTTGAACACGAGAGTATGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CAA 90 bp CACATGGGAAGGATGTGTGCTGAGTTCAGTTTATGGCTGACATCATCTTCCATGCATCTGAATACACGGTaGAATGAGCAAAAAGAGTAT +
Preference number: 5 (lower is better)
Translates to: HMGRMCAEFSLWLTSSSMHLNTR*NEQKEY
Trigger: ATACTCTTTTTGCTCATTCAACCGTGTATTCAGATG...CATGGAAGATGATGTCAGCCATAAACTGAACTCAGCACACATCCTTCCCATGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS-3UTR CAA 90 bp AATTTTAAGTGTATGGGTGTTTTGTCTGAGTGTATGTATGCATGCCACATAGACTTGACACTCCTGTGTTaGAAGGTCACACACCATCTC +
Preference number: 5 (lower is better)
Translates to: NFKCMGVLSECMYACHIDLTLLC*KVTHHL
Trigger: GAGATGGTGTGTGACCTTCAAACACAGGAGTGTCAA...GTCTATGTGGCATGCATACATACACTCAGACAAAACACCCATACACTTAAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 90 bp TGCACTTCCTTCTGGATTGATCTATCATCTGAATACACGGTTGAATaGGCAAAAAGAGTATCCCTACCATGTAAAGCAAACCACATATAT +
Preference number: 5 (lower is better)
Translates to: CTSFWIDLSSEYTVE*AKRVSLPCKANHIY
Trigger: ATATATGTGGTTTGCTTTACATGGTAGGGATACTCTTTTTGCTCATTCAACCGTGTATTCAGATGATAGATCAATCCAGAAGGAAGTGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 72 bp TCATCAGGAACGTCCCAAATCCTGTCCCCGTGGTACTaGGGCCCTGGGCCAGGGCTCGTCTCTTCTGAAAGT +
Preference number: 6 (lower is better)
Translates to: SSGTSQILSPWY*GPGPGLVSSES
Trigger: ACTTTCAGAAGAGACGAGCCCTGGCCCAGGGCCTCAGTACCACGGGGACAGGATTTGGGACGTTCCTGATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CAA 90 bp CCTCATGAGCGCCCCACAGACACACAGGTTCAGGGACAGAGCACCTaGGATGAACATAGCATTCCGCCAGCCATATTCTGCGCACAGGTA +
Preference number: 6 (lower is better)
Translates to: PHERPTDTQVQGQST*DEHSIPPAIFCAQV
Trigger: TACCTGTGCGCAGAATATGGCTGGCGGAATGCTATGTTCATCCAAGGTGCTCTGTCCCTGAACCTGTGTGTCTGTGGGGCGCTCATGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 72 bp CCAGGGCTCGTCTCTTCTGAAAGTACCTTCCCACCATaGCCACTGCAGGTAGGTAAGCCATCCCACTGCCAA +
Preference number: 6 (lower is better)
Translates to: PGLVSSESTFPP*PLQVGKPSHCQ
Trigger: TTGGCAGTGGGATGGCTTACCTACCTGCAGTGGTCATGGTGGGAAGGTACTTTCAGAAGAGACGAGCCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CCA 72 bp ACCATCATCCAGGCCCACCCGCCATCGATATCTGGGTaGGGCTTCAGCGTCTTCTTATTCTTAGCCTTTCGG +
Preference number: 6 (lower is better)
Translates to: TIIQAHPPSISG*GFSVFLFLAFR
Trigger: CCGAAAGGCTAAGAATAAGAAGACGCTGAAGCCCCACCCAGATATCGATGGCGGGTGGGCCTGGATGATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027422.7
ENSMUST00000186980.2
CDS CCA 72 bp GAGGACCATCATCCAGGCCCACCCGCCATCGATATCTaGGTGGGGCTTCAGCGTCTTCTTATTCTTAGCCTT +
Preference number: 6 (lower is better)
Translates to: EDHHPGPPAIDI*VGLQRLLILSL
Trigger: AAGGCTAAGAATAAGAAGACGCTGAAGCCCCACCCAGATATCGATGGCGGGTGGGCCTGGATGATGGTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027422.7
ENSMUST00000186980.2
CDS CCA 72 bp GCCCCACAGACACACAGGTTCAGGGACAGAGCACCTTaGATGAACATAGCATTCCGCCAGCCATATTCTGCG +
Preference number: 6 (lower is better)
Translates to: APQTHRFRDRAP*MNIAFRQPYSA
Trigger: CGCAGAATATGGCTGGCGGAATGCTATGTTCATCCAAGGTGCTCTGTCCCTGAACCTGTGTGTCTGTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CCA 72 bp CCCGGGCCTTCTGTCCTGTTCTTCAGCCATGCCCAGTaGTCCTCCAGACTTAACAGATTCAGTGGAGTAAGC +
Preference number: 6 (lower is better)
Translates to: PGPSVLFFSHAQ*SSRLNRFSGVS
Trigger: GCTTACTCCACTGAATCTGTTAAGTCTGGAGGACCACTGGGCATGGCTGAAGAACAGGACAGAAGGCCCGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CAA 72 bp CGCCCCACAGACACACAGGTTCAGGGACAGAGCACCTaGGATGAACATAGCATTCCGCCAGCCATATTCTGC +
Preference number: 6 (lower is better)
Translates to: RPTDTQVQGQST*DEHSIPPAIFC
Trigger: GCAGAATATGGCTGGCGGAATGCTATGTTCATCCAAGGTGCTCTGTCCCTGAACCTGTGTGTCTGTGGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CAA 72 bp CTTCCTCGGATGGGTTTGACCTTGACACTCCTGTGTTaGAAGGTCACACACCATCTCCTCATTCCCGGGCCT +
Preference number: 6 (lower is better)
Translates to: LPRMGLTLTLLC*KVTHHLLIPGP
Trigger: AGGCCCGGGAATGAGGAGATGGTGTGTGACCTTCAAACACAGGAGTGTCAAGGTCAAACCCATCCGAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CAA 90 bp ACACACATTCTTCCTCGGATGGGTTTGACCTTGACACTCCTGTGTTaGAAGGTCACACACCATCTCCTCATTCCCGGGCCTTCTGTCCTG +
Preference number: 6 (lower is better)
Translates to: THILPRMGLTLTLLC*KVTHHLLIPGPSVL
Trigger: CAGGACAGAAGGCCCGGGAATGAGGAGATGGTGTGTGACCTTCAAACACAGGAGTGTCAAGGTCAAACCCATCCGAGGAAGAATGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS GCA 72 bp ACCTTGGATGAACATAGCATTCCGCCAGCCATATTCTaGGCACAGGTATTTCAGCAACACGGTCATCAGGAA +
Preference number: 6 (lower is better)
Translates to: TLDEHSIPPAIF*AQVFQQHGHQE
Trigger: TTCCTGATGACCGTGTTGCTGAAATACCTGTGCGCAGAATATGGCTGGCGGAATGCTATGTTCATCCAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS CAA 72 bp CTAAACATGTGCACCCTCTATGCACTTCCTTCTGGATaGATCTATCATCTGAATACACGGTTGAATGAGCAA +
Preference number: 6 (lower is better)
Translates to: LNMCTLYALPSG*IYHLNTRLNEQ
Trigger: TTGCTCATTCAACCGTGTATTCAGATGATAGATCAATCCAGAAGGAAGTGCATAGAGGGTGCACATGTTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7
CDS TCA 72 bp TTCTGGATTGATCTATCATCTGAATACACGGTTGAATaGGCAAAAAGAGTATCCCTACCATGTAAAGCAAAC +
Preference number: 6 (lower is better)
Translates to: FWIDLSSEYTVE*AKRVSLPCKAN
Trigger: GTTTGCTTTACATGGTAGGGATACTCTTTTTGCTCATTCAACCGTGTATTCAGATGATAGATCAATCCAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027422.7