RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC16A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032902

Ensembl transcript IDs: ENSMUST00000046212.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTaGTCCCAGGCCCGCTTTACAGCACAGCTGATAGCCACGATAGAG +
Preference number: 1 (lower is better)
Translates to: KSAFKGVTDKAQSAH*SQARFTAQLIATIE
Trigger: CTCTATCGTGGCTATCAGCTGTGCTGTAAAGCGGGCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR CCA 90 bp GAGAAAAGGTTTCAGGGGTCAAGGAGAAGGATTCCAGGGTGCCTGTaGGTTGTGGCTCAGTGGTACAGCATGCACTTAGCATGCTTGTGG +
Preference number: 1 (lower is better)
Translates to: EKRFQGSRRRIPGCL*VVAQWYSMHLACLW
Trigger: CCACAAGCATGCTAAGTGCATGCTGTACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGAAACCTTTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR CCA 90 bp TGTAGTAAGCATTTGAGAAGTGCCCAGCAGGTGACAGGCTGTGGCTaGAACTGCCAAGATGTTCCCAAAATTTTATGTTTCAAATTTCTT +
Preference number: 1 (lower is better)
Translates to: CSKHLRSAQQVTGCG*NCQDVPKILCFKFL
Trigger: AAGAAATTTGAAACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTGGGCACTTCTCAAATGCTTACTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR GCA 90 bp AAGCATTTGAGAAGTGCCCAGCAGGTGACAGGCTGTGGCTGGAACTaGCAAGATGTTCCCAAAATTTTATGTTTCAAATTTCTTAAATAT +
Preference number: 1 (lower is better)
Translates to: KHLRSAQQVTGCGWN*QDVPKILCFKFLKY
Trigger: ATATTTAAGAAATTTGAAACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTGGGCACTTCTCAAATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR TCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCTCCTGGGCTCAACCCTaGGCGCAGACACACCTGCCC +
Preference number: 2 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGSWAQP*AQTHLP
Trigger: GGGCAGGTGTGTCTGCGCTCAGGGTTGAGCCCAGGA...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR TCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCGTGGCTTTAGCCCAGTaGCAGAGCAATTGCTGGACC +
Preference number: 2 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGVALAQ*QSNCWT
Trigger: GGTCCAGCAATTGCTCTGTCACTGGGCTAAAGCCAC...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCACTGTAGTTCCAATCTaGTCCATCTTTCCTCTTATC +
Preference number: 2 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGTVVPI*SIFPLI
Trigger: GATAAGAGGAAAGATGGACCAGATTGGAACTACAGT...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCCTTTATATTGCAAGGTaGTTCCCACAGTGTCTTAAG +
Preference number: 2 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGLYIAR*FPQCLK
Trigger: CTTAAGACACTGTGGGAACCACCTTGCAATATAAAG...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR TCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCTCCAGTAACAATGTCTaGCAAAGCATTACAAACAAC +
Preference number: 2 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGSSNNV*QSITNN
Trigger: GTTGTTTGTAATGCTTTGTCAGACATTGTTACTGGA...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR GCA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCCCTAGCAGGTGGATATaGCAGGCAACTATAATGCTA +
Preference number: 2 (lower is better)
Translates to: LTASGDLSSRCGLKILPCPSRWI*QATIML
Trigger: TAGCATTATAGTTGCCTGGCATATCCACCTGCTAGG...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CCA 90 bp CACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCATTTATATACCTAGCAGGTaGATATGCCAGGCAACTATA +
Preference number: 2 (lower is better)
Translates to: HCSSNLVHLSSYPYTEPIYIPSR*ICQATI
Trigger: TATAGTTGCCTGGCATATCCACCTGCTAGGTATATA...AATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR GCA 90 bp CACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCATTTACACTGAATTCAGCTaGTGCTTGAAATACTGCATA +
Preference number: 2 (lower is better)
Translates to: HCSSNLVHLSSYPYTEPIYTEFS*CLKYCI
Trigger: TATGCAGTATTTCAAGCAGCAGCTGAATTCAGTGTA...AATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR CAA 90 bp TCAGACGTGTTAAAGAGTTGTTTTGTAGATGTTAATACTAACCTTTaGCAGTTGATTTCAGTGTCTCTGAATAGGAGCAAAGGTGACAGT +
Preference number: 2 (lower is better)
Translates to: SDVLKSCFVDVNTNL*QLISVSLNRSKGDS
Trigger: ACTGTCACCTTTGCTCCTATTCAGAGACACTGAAATCAACTGCAAAAGGTTAGTATTAACATCTACAAAACAACTCTTTAACACGTCTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR GCA 72 bp TTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTaGTCCCAGGCCCGCTTTACAGCACAGCTGATAGCC +
Preference number: 3 (lower is better)
Translates to: FKGVTDKAQSAH*SQARFTAQLIA
Trigger: GGCTATCAGCTGTGCTGTAAAGCGGGCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR GCA 72 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTaGCCACTGCTCCCAGGCCCGCTTTACAGCACAGCT +
Preference number: 3 (lower is better)
Translates to: ISIQRSDGQGSE*PLLPGPLYSTA
Trigger: AGCTGTGCTGTAAAGCGGGCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR CCA 72 bp AGAAGGATTCCAGGGTGCCTGTGGGTTGTGGCTCAGTaGTACAGCATGCACTTAGCATGCTTGTGGCCCTGG +
Preference number: 3 (lower is better)
Translates to: RRIPGCLWVVAQ*YSMHLACLWPW
Trigger: CCAGGGCCACAAGCATGCTAAGTGCATGCTGTACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR GCA 72 bp AAAAGGTTTCAGGGGTCAAGGAGAAGGATTCCAGGGTaGCTGTGGGTTGTGGCTCAGTGGTACAGCATGCAC +
Preference number: 3 (lower is better)
Translates to: KRFQGSRRRIPG*LWVVAQWYSMH
Trigger: GTGCATGCTGTACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGAAACCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CAA 90 bp TCAGGGGTCAAGGAGAAGGATTCCAGGGTGCCTGTGGGTTGTGGCTCAGTGGTATCTTTCCCATATCCTTaGCCAACCACTCCCTACCTA +
Preference number: 3 (lower is better)
Translates to: SGVKEKDSRVPVGCGSVVSFPYP*PTTPYL
Trigger: TAGGTAGGGAGTGGTTGGCAAAGGATATGGGAAAGA...TACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CAA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCGGCTGTAGTAAGCATTaGAGAAGTGCCCAGCAGGTG +
Preference number: 3 (lower is better)
Translates to: LTASGDLSSRCGLKILPCGCSKH*RSAQQV
Trigger: CACCTGCTGGGCACTTCTCAAATGCTTACTACAGCC...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CAA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCATGCACTTAGCATGCTaGTGGCCCTGGGTTCAAACC +
Preference number: 3 (lower is better)
Translates to: LTASGDLSSRCGLKILPCMHLAC*WPWVQT
Trigger: GGTTTGAACCCAGGGCCACAAGCATGCTAAGTGCAT...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR CCA 72 bp CACCACATTCTCACCACAACACTTTATATTGCAAGGTaGTTCCCACAGTGTCTTAAGGCTAACAGCATCAGG +
Preference number: 3 (lower is better)
Translates to: HHILTTTLYIAR*FPQCLKANSIR
Trigger: CCTGATGCTGTTAGCCTTAAGACACTGTGGGAACCACCTTGCAATATAAAGTGTTGTGGTGAGAATGTGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CAA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCCTAACCCTCGTGGTTTaGCAAATACTGAAAAACAAT +
Preference number: 3 (lower is better)
Translates to: LTASGDLSSRCGLKILPCLTLVV*QILKNN
Trigger: ATTGTTTTTCAGTATTTGCAAAACCACGAGGGTTAG...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR GCA 72 bp AGAAGTGCCCAGCAGGTGACAGGCTGTGGCTGGAACTaGCAAGATGTTCCCAAAATTTTATGTTTCAAATTT +
Preference number: 3 (lower is better)
Translates to: RSAQQVTGCGWN*QDVPKILCFKF
Trigger: AAATTTGAAACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTGGGCACTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR-3UTR CAA 90 bp AAACACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCCCCATTTTATCTTTATaGGCTTCCCTGAGGCCAAAC +
Preference number: 3 (lower is better)
Translates to: KHCSSNLVHLSSYPYTEPPILSL*ASLRPN
Trigger: GTTTGGCCTCAGGGAAGCCAATAAAGATAAAATGGG...GGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR TCA 72 bp GAAACTCATTCAGTAATTTTCCCACTCTGCTATATGTaGCAGTTCATGCCCAGCTCACATCTATTACCCAGC +
Preference number: 3 (lower is better)
Translates to: ETHSVIFPLCYM*QFMPSSHLLPS
Trigger: GCTGGGTAATAGATGTGAGCTGGGCATGAACTGTCACATATAGCAGAGTGGGAAAATTACTGAATGAGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR TCA 72 bp TCTCATACCGTAACTAAGGTTTGGGGAAACCTACACTaGATTCAGCTGCTGCTTGAAATACTGCATACATTA +
Preference number: 3 (lower is better)
Translates to: SHTVTKVWGNLH*IQLLLEILHTL
Trigger: TAATGTATGCAGTATTTCAAGCAGCAGCTGAATTCAGTGTAGGTTTCCCCAAACCTTAGTTACGGTATGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR TCA 72 bp TTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTaGACCCATTTTTCTACATTTCAGGTGAGTGAAAGG +
Preference number: 3 (lower is better)
Translates to: FQSGPSFLLSLH*THFSTFQVSER
Trigger: CCTTTCACTCACCTGAAATGTAGAAAAATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR TCA 72 bp TTTCATTTTTATAGAAGAGAAAGGTTCACAGAAGTATaGCATGGCTTCACAGAAGATAAGAGTCCAAACCAG +
Preference number: 3 (lower is better)
Translates to: FHFYRRERFTEV*HGFTEDKSPNQ
Trigger: CTGGTTTGGACTCTTATCTTCTGTGAAGCCATGTCATACTTCTGTGAACCTTTCTCTTCTATAAAAATGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCGGGGGTGTATCCCACTaGCCCTCCAATCGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGGGVSH*PSNRRW
Trigger: CCACCTGCGATTGGAGGGCCAGTGGGATACACCCCC...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp TCAGGGGTCAAGGAGAAGGATTCCAGGGTGCCTGTGGGTTGTGGCTCAGTGGTACCAAGCCCACAGCACTaGAGAACCTCTGGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: SGVKEKDSRVPVGCGSVVPSPQH*RTSGVQ
Trigger: TTGGACCCCAGAGGTTCTCCAGTGCTGTGGGCTTGG...TACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCGTTACAGAAAGAAGCTaGGATCAAGCCGCAACCAGA +
Preference number: 4 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGVTERS*DQAATR
Trigger: TCTGGTTGCGGCTTGATCGCAGCTTCTTTCTGTAAC...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp CAGCAGGTGACAGGCTGTGGCTGGAACTGCCAAGATGTTCCCAAAATTTTATGTAGAGGAACACAGGGCTaGCTGCCATGGCCAGTCCGT +
Preference number: 4 (lower is better)
Translates to: QQVTGCGWNCQDVPKILCRGTQG*LPWPVR
Trigger: ACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCT...ACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCTTTCATCGTCTCCTTTaGCTTCTCGTCGACATCGGT +
Preference number: 4 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGFHRLL*LLVDIG
Trigger: ACCGATGTCGACGAGAAGCCAAAGGAGACGATGAAA...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
3UTR CAA 72 bp AGTGATAACACTTCAGCACGAGGCTGTAGTAAGCATTaGAGAAGTGCCCAGCAGGTGACAGGCTGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: SDNTSARGCSKH*RSAQQVTGCGW
Trigger: CCAGCCACAGCCTGTCACCTGCTGGGCACTTCTCAAATGCTTACTACAGCCTCGTGCTGAAGTGTTATCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCTCATTACTGGACGGCTaGCGTATTTATTCACCAAGA +
Preference number: 4 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGSLLDG*RIYSPR
Trigger: TCTTGGTGAATAAATACGGCAGCCGTCCAGTAATGA...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp TCAGGGGTCAAGGAGAAGGATTCCAGGGTGCCTGTGGGTTGTGGCTCAGTGGTAATGGCACACTCCATTTaGAACAACAGAAGCAGCAAA +
Preference number: 4 (lower is better)
Translates to: SGVKEKDSRVPVGCGSVVMAHSI*NNRSSK
Trigger: TTTGCTGCTTCTGTTGTTGCAAATGGAGTGTGCCAT...TACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCCAGTCCGTTGGCCAGTaGTCGCTTCTTGTAGAAATA +
Preference number: 4 (lower is better)
Translates to: LTASGDLSSRCGLKILPCQSVGQ*SLLVEI
Trigger: TATTTCTACAAGAAGCGACCACTGGCCAACGGACTG...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR TCA 90 bp CAGCAGGTGACAGGCTGTGGCTGGAACTGCCAAGATGTTCCCAAAATTTTATGTACCTCTGGGGTCCAATaGGGTCCATCAATGTTTCAA +
Preference number: 4 (lower is better)
Translates to: QQVTGCGWNCQDVPKILCTSGVQ*GPSMFQ
Trigger: TTGAAACATTGATGGACCTCATTGGACCCCAGAGGT...ACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp TCAGGGGTCAAGGAGAAGGATTCCAGGGTGCCTGTGGGTTGTGGCTCAGTGGTAAATGAGATCTGTATTTaGATCAGATTTTCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: SGVKEKDSRVPVGCGSVVNEICI*IRFSSF
Trigger: GAAGCTGGAAAATCTGATGCAAATACAGATCTCATT...TACCACTGAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp CACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCATTGGCAGCATTCCACAATaGTCACCAAGCCCACAGCAC +
Preference number: 4 (lower is better)
Translates to: HCSSNLVHLSSYPYTEPIGSIPQ*SPSPQH
Trigger: GTGCTGTGGGCTTGGTGACCATTGTGGAATGCTGCC...AATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp AAACACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCCGTCGACATCGGTGCTaGCCTCGTCCTCTTTTCCTT +
Preference number: 4 (lower is better)
Translates to: KHCSSNLVHLSSYPYTEPRRHRC*PRPLFL
Trigger: AAGGAAAAGAGGACGAGGCCAGCACCGATGTCGACG...GGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR TCA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCCAAATAATACAGAGCTaGGCCAACCAAAGGCAAATC +
Preference number: 4 (lower is better)
Translates to: LTASGDLSSRCGLKILPCQIIQS*ANQRQI
Trigger: GATTTGCCTTTGGTTGGCTCAGCTCTGTATTATTTG...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp CAGCAGGTGACAGGCTGTGGCTGGAACTGCCAAGATGTTCCCAAAATTTTATGTTTTCCTTCCCTTTTCTaGTTCTCCTCCGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: QQVTGCGWNCQDVPKILCFPSLF*FSSAFC
Trigger: ACAGAAAGCGGAGGAGAAGCAGAAAAGGGAAGGAAA...ACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR TCA 90 bp AAACACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCCTCCATACATGTCATTaGGGCGGCCTAAAAGTGGTG +
Preference number: 4 (lower is better)
Translates to: KHCSSNLVHLSSYPYTEPLHTCH*GGLKVV
Trigger: CACCACTTTTAGGCCGCCTCAATGACATGTATGGAG...GGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CCA 90 bp CTAACAGCATCAGGGGATCTCAGCTCAAGATGCGGTCTTAAAATCCTTCCCTGCAGGCTGATTTCTCACTaGAAAAATCCTTACTCTTAC +
Preference number: 4 (lower is better)
Translates to: LTASGDLSSRCGLKILPCRLISH*KNPYSY
Trigger: GTAAGAGTAAGGATTTTTCCAGTGAGAAATCAGCCT...GCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR TCA 90 bp CACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCATTTGGGACTTCCTCCAATaGGATCTGTATTTGCATCAG +
Preference number: 4 (lower is better)
Translates to: HCSSNLVHLSSYPYTEPIWDFLQ*DLYLHQ
Trigger: CTGATGCAAATACAGATCTCATTGGAGGAAGTCCCA...AATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR TCA 90 bp CACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCATTATATCAAAGAAAGCCTaGTTAAGTGGAGCCAGGGTA +
Preference number: 4 (lower is better)
Translates to: HCSSNLVHLSSYPYTEPIISKKA*LSGARV
Trigger: TACCCTGGCTCCACTTAATCAGGCTTTCTTTGATAT...AATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR TCA 90 bp AAACACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCGGAAAGAAGGAAGGCTaGTTTCTCACTGGAAAAATC +
Preference number: 4 (lower is better)
Translates to: KHCSSNLVHLSSYPYTEPGKKEG*FLTGKI
Trigger: GATTTTTCCAGTGAGAAATCAGCCTTCCTTCTTTCC...GGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR GCA 90 bp AAACACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCGATGGATTTGGGAAATaGATAGGAGAAGCCAATAGA +
Preference number: 4 (lower is better)
Translates to: KHCSSNLVHLSSYPYTEPDGFGK*IGEANR
Trigger: TCTATTGGCTTCTCCTATGCATTTCCCAAATCCATC...GGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 90 bp CAGACAGGGCTCTCCTCCTCTGTGGGGTCCCCGGAGCTGTGCTGCTaGGGCGACTGTGCAGCTTTCATCGTCTCCTTTGGCTTCTCGTCG +
Preference number: 5 (lower is better)
Translates to: QTGLSSSVGSPELCC*GDCAAFIVSFGFSS
Trigger: CGACGAGAAGCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAGAGCCCTGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 90 bp CTCCTCCTCTGTGGGGTCCCCGGAGCTGTGCTGCTGCGGCGACTGTaGAGCTTTCATCGTCTCCTTTGGCTTCTCGTCGACATCGGTGCT +
Preference number: 5 (lower is better)
Translates to: LLLCGVPGAVLLRRL*SFHRLLWLLVDIGA
Trigger: AGCACCGATGTCGACGAGAAGCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CAA 90 bp CAGCAGGTGACAGGCTGTGGCTGGAACTGCCAAGATGTTCCCAAAATTTTATGTCGAGGTCTGATCCACTaGGTGTTGGCTGCAAGTCCC +
Preference number: 5 (lower is better)
Translates to: QQVTGCGWNCQDVPKILCRGLIH*VLAASP
Trigger: GGGACTTGCAGCCAACACCAAGTGGATCAGACCTCG...ACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CAA 90 bp ATCAGCATTCAAAGGAGTGACGGACAAGGCTCAGAGTGCCCACTGCTCCCAGGCGACAAGTCCAGGAATTaGTTAATTGTTTGGAAGACG +
Preference number: 5 (lower is better)
Translates to: ISIQRSDGQGSECPLLPGDKSRN*LIVWKT
Trigger: CGTCTTCCAAACAATTAACAAATTCCTGGACTTGTC...GCCTGGGAGCAGTGGGCACTCTGAGCCTTGTCCGTCACTCCTTTGAATGCTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CCA 90 bp CCCCTATGGGTAAACAGCGACAAGTCCAGGAATTTGTTAATTGTTTaGAAGACGGACAGCTTTTCTCCTTTGGGACTTCCTCCAATGAGA +
Preference number: 5 (lower is better)
Translates to: PLWVNSDKSRNLLIV*KTDSFSPLGLPPMR
Trigger: TCTCATTGGAGGAAGTCCCAAAGGAGAAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACCCATAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CAA 90 bp CACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCATTTCTCCATACATGTCATaGAGGCGGCCTAAAAGTGGT +
Preference number: 5 (lower is better)
Translates to: HCSSNLVHLSSYPYTEPISPYMS*RRPKSG
Trigger: ACCACTTTTAGGCCGCCTCAATGACATGTATGGAGA...AATGGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CAA 90 bp CAGCAGGTGACAGGCTGTGGCTGGAACTGCCAAGATGTTCCCAAAATTTTATGTAGAGATTCTTTGGACTaGAGTTTTTCTAGCTTGACT +
Preference number: 5 (lower is better)
Translates to: QQVTGCGWNCQDVPKILCRDSLD*SFSSLT
Trigger: AGTCAAGCTAGAAAAACTCAAGTCCAAAGAATCTCT...ACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS-3UTR CAA 90 bp AAACACTGTAGTTCCAATCTGGTCCATCTTTCCTCTTATCCTTACACTGAACCCAATGGCACACTCCATTaGCAACAACAGAAGCAGCAA +
Preference number: 5 (lower is better)
Translates to: KHCSSNLVHLSSYPYTEPNGTLH*QQQKQQ
Trigger: TTGCTGCTTCTGTTGTTGCAAATGGAGTGTGCCATT...GGGTTCAGTGTAAGGATAAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS TCA 90 bp TTGTTTGGAAGACGGACAGCTTTTCTCCTTTGGGACTTCCTCCAATaGGATCTGTATTTGCATCAGATTTTCCAGCTTCCTGTAGAGATT +
Preference number: 5 (lower is better)
Translates to: LFGRRTAFLLWDFLQ*DLYLHQIFQLPVEI
Trigger: AATCTCTACAGGAAGCTGGAAAATCTGATGCAAATACAGATCTCATTGGAGGAAGTCCCAAAGGAGAAAAGCTGTCCGTCTTCCAAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 72 bp ACAGGGCTCTCCTCCTCTGTGGGGTCCCCGGAGCTGTaGTGCTGCGGCGACTGTGCAGCTTTCATCGTCTCC +
Preference number: 6 (lower is better)
Translates to: TGLSSSVGSPEL*CCGDCAAFIVS
Trigger: GGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAGAGCCCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 72 bp CTCTCCTCCTCTGTGGGGTCCCCGGAGCTGTGCTGCTaGGGCGACTGTGCAGCTTTCATCGTCTCCTTTGGC +
Preference number: 6 (lower is better)
Translates to: LSSSVGSPELCC*GDCAAFIVSFG
Trigger: GCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 72 bp GGGCTCTCCTCCTCTGTGGGGTCCCCGGAGCTGTGCTaGTGCGGCGACTGTGCAGCTTTCATCGTCTCCTTT +
Preference number: 6 (lower is better)
Translates to: GLSSSVGSPELC*CGDCAAFIVSF
Trigger: AAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAGAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 72 bp TGTGGGGTCCCCGGAGCTGTGCTGCTGCGGCGACTGTaGAGCTTTCATCGTCTCCTTTGGCTTCTCGTCGAC +
Preference number: 6 (lower is better)
Translates to: CGVPGAVLLRRL*SFHRLLWLLVD
Trigger: GTCGACGAGAAGCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CCA 72 bp GTGGTGGCCCTAGGAGGACAGGGCAGCATTCCACAATaGTCACCAAGCCCACAGCACTGGAGAACCTCTGGG +
Preference number: 6 (lower is better)
Translates to: VVALGGQGSIPQ*SPSPQHWRTSG
Trigger: CCCAGAGGTTCTCCAGTGCTGTGGGCTTGGTGACCATTGTGGAATGCTGCCCTGTCCTCCTAGGGCCACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS GCA 72 bp CTTTCATCGTCTCCTTTGGCTTCTCGTCGACATCGGTaGTGGCCTCGTCCTCTTTTCCTTCCCTTTTCTGCT +
Preference number: 6 (lower is better)
Translates to: LSSSPLASRRHR*WPRPLFLPFSA
Trigger: AGCAGAAAAGGGAAGGAAAAGAGGACGAGGCCAGCACCGATGTCGACGAGAAGCCAAAGGAGACGATGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CAA 90 bp GCCCCTATGGGTAAACAGCGACAAGTCCAGGAATTTGTTAATTGTTaGGAAGACGGACAGCTTTTCTCCTTTGGGACTTCCTCCAATGAG +
Preference number: 6 (lower is better)
Translates to: APMGKQRQVQEFVNC*EDGQLFSFGTSSNE
Trigger: CTCATTGGAGGAAGTCCCAAAGGAGAAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACCCATAGGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS TCA 72 bp AGACGGACAGCTTTTCTCCTTTGGGACTTCCTCCAATaGGATCTGTATTTGCATCAGATTTTCCAGCTTCCT +
Preference number: 6 (lower is better)
Translates to: RRTAFLLWDFLQ*DLYLHQIFQLP
Trigger: AGGAAGCTGGAAAATCTGATGCAAATACAGATCTCATTGGAGGAAGTCCCAAAGGAGAAAAGCTGTCCGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CAA 72 bp GGTAAACAGCGACAAGTCCAGGAATTTGTTAATTGTTaGGAAGACGGACAGCTTTTCTCCTTTGGGACTTCC +
Preference number: 6 (lower is better)
Translates to: GKQRQVQEFVNC*EDGQLFSFGTS
Trigger: GGAAGTCCCAAAGGAGAAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CCA 72 bp GTAAACAGCGACAAGTCCAGGAATTTGTTAATTGTTTaGAAGACGGACAGCTTTTCTCCTTTGGGACTTCCT +
Preference number: 6 (lower is better)
Translates to: VNSDKSRNLLIV*KTDSFSPLGLP
Trigger: AGGAAGTCCCAAAGGAGAAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CAA 90 bp GTATTTGCATCAGATTTTCCAGCTTCCTGTAGAGATTCTTTGGACTaGAGTTTTTCTAGCTTGACTTGCTCAGGCCCTATTGGTCTCATC +
Preference number: 6 (lower is better)
Translates to: VFASDFPASCRDSLD*SFSSLTCSGPIGLI
Trigger: GATGAGACCAATAGGGCCTGAGCAAGTCAAGCTAGAAAAACTCAAGTCCAAAGAATCTCTACAGGAAGCTGGAAAATCTGATGCAAATAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2
CDS CAA 90 bp AGATCTGTATTTGCATCAGATTTTCCAGCTTCCTGTAGAGATTCTTaGGACTTGAGTTTTTCTAGCTTGACTTGCTCAGGCCCTATTGGT +
Preference number: 6 (lower is better)
Translates to: RSVFASDFPASCRDS*DLSFSSLTCSGPIG
Trigger: ACCAATAGGGCCTGAGCAAGTCAAGCTAGAAAAACTCAAGTCCAAAGAATCTCTACAGGAAGCTGGAAAATCTGATGCAAATACAGATCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046212.2