RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC10A7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031684

Ensembl transcript IDs: ENSMUST00000034111.10, ENSMUST00000209490.2, ENSMUST00000209992.2, ENSMUST00000210515.2, ENSMUST00000210630.2, ENSMUST00000211286.2

Found 217 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACCTTTGTGCTCCATGGAGGCAGCACACTCACCAAACAGACTCACTaGCTCCTCGTCCCCAGCATGGTCCCCACAGGCCGTGCAGCGTGG +
Preference number: 1 (lower is better)
Translates to: TFVLHGGSTLTKQTH*LLVPSMVPTGRAAW
Trigger: CCACGCTGCACGGCCTGTGGGGACCATGCTGGGGACGAGGAGGCAGTGAGTCTGTTTGGTGAGTGTGCTGCCTCCATGGAGCACAAAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CCA 90 bp CACTGCCTCCTCGTCCCCAGCATGGTCCCCACAGGCCGTGCAGCGTaGATCTCTGCCAGGCCTGACACCAGTGTTATAGCTATGCTCAGA +
Preference number: 1 (lower is better)
Translates to: HCLLVPSMVPTGRAA*ISARPDTSVIAMLR
Trigger: TCTGAGCATAGCTATAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGGGGACGAGGAGGCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR TCA 90 bp CAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTaGCACCAGTGTTATAGCTATGCTCAGAATTATGAAGTCCCGAGA +
Preference number: 1 (lower is better)
Translates to: QHGPHRPCSVDLCQA*HQCYSYAQNYEVPR
Trigger: TCTCGGGACTTCATAATTCTGAGCATAGCTATAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR TCA 90 bp AGGTACCTGACGCTTCTCGGCATCTCTGCGATCTGCATCCCCCGCTaGGTTGATAAGGAAGAGCCCGTCACAGTCTTAGAAACAAAGAAC +
Preference number: 1 (lower is better)
Translates to: RYLTLLGISAICIPR*VDKEEPVTVLETKN
Trigger: GTTCTTTGTTTCTAAGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGCGTCAGGTACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR TCA 90 bp AACCAGCTGACGCTTCTCGGCATCTCTGCGATCTGCATCCCCCGCTaGGTTGATAAGGAAGAGCCCGTCACAGTCTTAGAAACAAAGAAC +
Preference number: 1 (lower is better)
Translates to: NQLTLLGISAICIPR*VDKEEPVTVLETKN
Trigger: GTTCTTTGTTTCTAAGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGCGTCAGCTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211286.2
3UTR GCA 90 bp GGTGAGGGACTTGTGTGTGGAGCAGAAGATGATAGCCACTGTGTCTaGTGGTGTGAACCCCGAGTTATTCCGTGTGGAGAAGATGAAAGT +
Preference number: 1 (lower is better)
Translates to: GEGLVCGAEDDSHCV*WCEPRVIPCGEDES
Trigger: ACTTTCATCTTCTCCACACGGAATAACTCGGGGTTCACACCAGCAGACACAGTGGCTATCATCTTCTGCTCCACACACAAGTCCCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR GCA 90 bp GTAGATGAGCAAGGGCACGGATATCAGCGAGAGATGCTCATGGCCTaGAAACACTATCTTCAGCATTGGGATTCCCAAGGTGAGGGACTT +
Preference number: 1 (lower is better)
Translates to: VDEQGHGYQREMLMA*KHYLQHWDSQGEGL
Trigger: AAGTCCCTCACCTTGGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTGCTCATCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR CCA 90 bp GAGGGACTTGTGTGTGGAGCAGAAGATGATAGCCACTGTGTCTGCTaGTGTGAACCCCGAGTTATTCCGTGTGGAGAAGATGAAAGTCAG +
Preference number: 1 (lower is better)
Translates to: EGLVCGAEDDSHCVC*CEPRVIPCGEDESQ
Trigger: CTGACTTTCATCTTCTCCACACGGAATAACTCGGGGTTCACACCAGCAGACACAGTGGCTATCATCTTCTGCTCCACACACAAGTCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR GCA 90 bp AAGCAGGAAGCTCAGGAAAGACGCTCCCACCACTGTTCAGTATGCTaGTTTAGCTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTC +
Preference number: 1 (lower is better)
Translates to: KQEAQERRSHHCSVC*FSFLFGFSVGFSGV
Trigger: GACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTGAGCTTCCTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR GCA 90 bp ACTAAGCAGGAAGCTCAGGAAAGACGCTCCCACCACTGTTCAGTATaGTGCTTTAGCTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGA +
Preference number: 1 (lower is better)
Translates to: TKQEAQERRSHHCSV*CFSFLFGFSVGFSG
Trigger: TCCAGAAAAGCCTACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTGAGCTTCCTGCTTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CCA 90 bp TATCAGCGAGAGATGCTCATGGCCTGCAAACACTATCTTCAGCATTaGGATTCCCAAGGTGAGGGACTTGTGTGTGGAGCAGAAGATGAT +
Preference number: 1 (lower is better)
Translates to: YQREMLMACKHYLQH*DSQGEGLVCGAEDD
Trigger: ATCATCTTCTGCTCCACACACAAGTCCCTCACCTTGGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR CCA 90 bp TATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTaGGTTGGAGAAGGTGTCACAGAAGGTGGTGTAGATGATCATGAG +
Preference number: 1 (lower is better)
Translates to: YEQYEDEAELVQVDV*VGEGVTEGGVDDHE
Trigger: CTCATGATCATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR TCA 90 bp ACAGTCTTAGAAACAAAGAACCACTCGGTGAATCAAAGTGTGCGGTaGATGAGACTTTGGAATCGTTCACTGTCACCAGGAGGGAGGTTT +
Preference number: 1 (lower is better)
Translates to: TVLETKNHSVNQSVR*MRLWNRSLSPGGRF
Trigger: AAACCTCCCTCCTGGTGACAGTGAACGATTCCAAAGTCTCATTCACCGCACACTTTGATTCACCGAGTGGTTCTTTGTTTCTAAGACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CCA 90 bp GAGACTTTGGAATCGTTCACTGTCACCAGGAGGGAGGTTTCTGGATaGCATGACCTCATTTTGAACGTTATAGTGCTATTAGAGTCTTGC +
Preference number: 1 (lower is better)
Translates to: ETLESFTVTRREVSG*HDLILNVIVLLESC
Trigger: GCAAGACTCTAATAGCACTATAACGTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAACGATTCCAAAGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp CCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGCTTCTCGGCATCTCTaGGATCTGCATCCCCCGCTG +
Preference number: 2 (lower is better)
Translates to: PAWSPQAVQRGSLPGLTPASRHL*DLHPPL
Trigger: CAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGC...TGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR TCA 90 bp TGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGTGTTAGAAGTCCCGAGACAGTaGCACAGAGGACCTGGTGCT +
Preference number: 2 (lower is better)
Translates to: WSPQAVQRGSLPGLTPVLEVPRQ*HRGPGA
Trigger: AGCACCAGGTCCTCTGTGTCACTGTCTCGGGACTTC...TAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp GGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTGCTTCTCGGCATCTCTaGGATCTGCATCCCCCGCTG +
Preference number: 2 (lower is better)
Translates to: GFSGVLSKAGAQFPDSSCASRHL*DLHPPL
Trigger: CAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGC...ACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp AGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTCCCGCTTCTCGGCATCTCTaGGATCTGCATCCCCCGCTG +
Preference number: 2 (lower is better)
Translates to: RPVMPVPTLSRKLRKDAPASRHL*DLHPPL
Trigger: CAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGC...GGGAGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp CATCCTGTTGACAGCTCGGTGAGTGGAAGGTCCTGCCTGCTCTTCTGGACCAGCGTGTGCGGGGATGGATaGAAGAAGACGGTGTCAAGG +
Preference number: 2 (lower is better)
Translates to: HPVDSSVSGRSCLLFWTSVCGDG*KKTVSR
Trigger: CCTTGACACCGTCTTCTTCCATCCATCCCCGCACAC...GCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp TGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGTGTTACAGCGTAGGCTTTTCTaGAGTCCTTTCCAAAGCTGG +
Preference number: 2 (lower is better)
Translates to: WSPQAVQRGSLPGLTPVLQRRLF*SPFQSW
Trigger: CCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTG...TAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR TCA 90 bp CCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGGTTTCTGGATGGCATaGCCTCATTTTGAACGTTAT +
Preference number: 2 (lower is better)
Translates to: PAWSPQAVQRGSLPGLTPGFWMA*PHFERY
Trigger: ATAACGTTCAAAATGAGGTCATGCCATCCAGAAACC...TGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp AGCCCCCACTACCAACAGCAAAGGCAGCTGCTGGGGAGACCCGTGATGCCTGTTAGTGTTTCTGGAGTGTaGGGGGATGGATGGAAGAAG +
Preference number: 2 (lower is better)
Translates to: SPHYQQQRQLLGRPVMPVSVSGV*GDGWKK
Trigger: CTTCTTCCATCCATCCCCGCACACTCCAGAAACACT...AACAGGCATCACGGGTCTCCCCAGCAGCTGCCTTTGCTGTTGGTAGTGGGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp CCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCATGTAACATTAGCTCATaGCCACGGCCTCATGTTTAT +
Preference number: 2 (lower is better)
Translates to: PAWSPQAVQRGSLPGLTPCNISS*PRPHVY
Trigger: ATAAACATGAGGCCGTGGGCATGAGCTAATGTTACA...TGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR TCA 90 bp GCTGGGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGAGGACGATCTGTCCAATaGCAAGAGGAACCACCACCG +
Preference number: 2 (lower is better)
Translates to: AGETRDACSNTKQEAQERGRSVQ*QEEPPP
Trigger: CGGTGGTGGTTCCTCTTGTCATTGGACAGATCGTCC...TCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAACCTTTCCAAAGCTGGTaGCCAGTTCCCGGACTCATC +
Preference number: 2 (lower is better)
Translates to: QLNFVAVTHREVDVVGGEPFQSW*PVPGLI
Trigger: GATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGG...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp AACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTCCTTTCCAAAGCTGGTaGCCAGTTCCCGGACTCATC +
Preference number: 2 (lower is better)
Translates to: NFVAVTHREVDVVGGETSPFQSW*PVPGLI
Trigger: GATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGG...ACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGCTTCTCGGCATCTCTaGGATCTGCATCCCCCGCTG +
Preference number: 2 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCASRHL*DLHPPL
Trigger: CAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp CATCCTGTTGACAGCTCGGTGAGTGGAAGGTCCTGCCTGCTCTTCTGGACCAGCAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTC +
Preference number: 2 (lower is better)
Translates to: HPVDSSVSGRSCLLFWTSSERCS*PANTIF
Trigger: GAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCT...GCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAACAGGAGAATCTGAGCTaGGTGGTAGATGAGCAAGGG +
Preference number: 2 (lower is better)
Translates to: QLNFVAVTHREVDVVGGEQENLS*VVDEQG
Trigger: CCCTTGCTCATCTACCACCCAGCTCAGATTCTCCTG...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR TCA 90 bp AGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTCCCGATCTCTGCCAGGCCTaGCACCAGTGTTATAGCTAT +
Preference number: 2 (lower is better)
Translates to: RPVMPVPTLSRKLRKDAPDLCQA*HQCYSY
Trigger: ATAGCTATAACACTGGTGTCAGGCCTGGCAGAGATC...GGGAGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR TCA 90 bp AAGGGTTGCGTCTACAACTCTGGCAGGCAGACAGTGTCTACTTCCTCTAAAGCCCTGTGTCTGCTGGTGTaGACCCCGAGTTATTCCGTG +
Preference number: 2 (lower is better)
Translates to: KGCVYNSGRQTVSTSSKALCLLV*TPSYSV
Trigger: CACGGAATAACTCGGGGTTCACACCAGCAGACACAG...GGCTTTAGAGGAAGTAGACACTGTCTGCCTGCCAGAGTTGTAGACGCAACCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp AAGGCTGTGGGGGTGAGACTTGAAAACCTTTGTGCTCCATGGAGGCAGCACACTGATAGCCACTGTGTCTaGTGGTGTGAACCCCGAGTT +
Preference number: 2 (lower is better)
Translates to: KAVGVRLENLCAPWRQHTDSHCV*WCEPRV
Trigger: AACTCGGGGTTCACACCAGCAGACACAGTGGCTATC...AGTGTGCTGCCTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp CATCCTGTTGACAGCTCGGTGAGTGGAAGGTCCTGCCTGCTCTTCTGGACCAGCAGGGAGGTTTCTGGATaGCATGACCTCATTTTGAAC +
Preference number: 2 (lower is better)
Translates to: HPVDSSVSGRSCLLFWTSREVSG*HDLILN
Trigger: GTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCT...GCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp ACTGAAGTGTTTCTGGAGTGTGCGGGGATGGATGGAAGAAGACGGTGTCAAGGAGTGTGCGGGGATGGATaGAAGAAGACGGTGTCAAGG +
Preference number: 2 (lower is better)
Translates to: TEVFLECAGMDGRRRCQGVCGDG*KKTVSR
Trigger: CCTTGACACCGTCTTCTTCCATCCATCCCCGCACAC...TCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp GGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTGGTCGATGTTTGGGTTaGAGAAGGTGTCACAGAAGG +
Preference number: 2 (lower is better)
Translates to: GRPVMPVPTLSRKLRKDAGRCLG*RRCHRR
Trigger: CCTTCTGTGACACCTTCTCCAACCCAAACATCGACC...AGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR TCA 90 bp AGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTCCCATAACCCAACACCACTaGAAAGCCCAGGGAATTCTG +
Preference number: 2 (lower is better)
Translates to: RPVMPVPTLSRKLRKDAPITQHH*KAQGIL
Trigger: CAGAATTCCCTGGGCTTTTCAGTGGTGTTGGGTTAT...GGGAGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp AAGGCTGTGGGGGTGAGACTTGAAAACCTTTGTGCTCCATGGAGGCAGCACACTCAGCGTAGGCTTTTCTaGAGTCCTTTCCAAAGCTGG +
Preference number: 2 (lower is better)
Translates to: KAVGVRLENLCAPWRQHTQRRLF*SPFQSW
Trigger: CCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTG...AGTGTGCTGCCTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp GGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTTCACTCCCTTCTGCCTaGACACCATCCAAGACTTTA +
Preference number: 2 (lower is better)
Translates to: GRPVMPVPTLSRKLRKDASLPSA*TPSKTL
Trigger: TAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGTGA...AGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR TCA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTGGTTTCTGGATGGCATaGCCTCATTTTGAACGTTAT +
Preference number: 2 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCGFWMA*PHFERY
Trigger: ATAACGTTCAAAATGAGGTCATGCCATCCAGAAACC...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTTTAACGTTTGTAACATaGGTAAAGACTGCAGTGCCG +
Preference number: 2 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCLTFVT*VKTAVP
Trigger: CGGCACTGCAGTCTTTACGCATGTTACAAACGTTAA...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp GGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTGAGATGCTCATGGCCTaGAAACACTATCTTCAGCAT +
Preference number: 2 (lower is better)
Translates to: GFSGVLSKAGAQFPDSSCEMLMA*KHYLQH
Trigger: ATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTC...ACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR TCA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAGGTTTCTGGATGGCATaGCCTCATTTTGAACGTTAT +
Preference number: 2 (lower is better)
Translates to: QLNFVAVTHREVDVVGGEGFWMA*PHFERY
Trigger: ATAACGTTCAAAATGAGGTCATGCCATCCAGAAACC...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR TCA 90 bp GGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTGGTTTCTGGATGGCATaGCCTCATTTTGAACGTTAT +
Preference number: 2 (lower is better)
Translates to: GRPVMPVPTLSRKLRKDAGFWMA*PHFERY
Trigger: ATAACGTTCAAAATGAGGTCATGCCATCCAGAAACC...AGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR TCA 90 bp ACTCCCTTCTGCCTGGACACCATCCAAGACTTTATTGTTGGCACTAACACACTTGAGCTGGGTGGTAGATaGGCAAGGGCACGGATATCA +
Preference number: 2 (lower is better)
Translates to: TPFCLDTIQDFIVGTNTLELGGR*ARARIS
Trigger: TGATATCCGTGCCCTTGCTCATCTACCACCCAGCTC...AAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAACACTGTTCAGTATGCTaGTTTAGCTTCTTGTTTGGG +
Preference number: 2 (lower is better)
Translates to: QLNFVAVTHREVDVVGGEHCSVC*FSFLFG
Trigger: CCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTG...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CAA 90 bp CAGGAAAGACGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTaGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCT +
Preference number: 2 (lower is better)
Translates to: QERRSHHCSVCCFSF*FGFSVGFSGVLSKA
Trigger: AGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp CGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGTTCAGCGTAGTGACATTTGGGTGTTaGACGGGGATGTTGTGTGTA +
Preference number: 2 (lower is better)
Translates to: RSHHCSVCCFSFLFGFSVVTFGC*TGMLCV
Trigger: TACACACAACATCCCCGTGCAACACCCAAATGTCAC...TACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGTGACATTTGGGTGTTaGACGGGGATGTTGTGTGTA +
Preference number: 2 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCVTFGC*TGMLCV
Trigger: TACACACAACATCCCCGTGCAACACCCAAATGTCAC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp ACTCCCTTCTGCCTGGACACCATCCAAGACTTTATTGTTGGCACTAACACACTTGACCACACCAAATGGTaGCTTCTTCCTCTCCAGCCA +
Preference number: 2 (lower is better)
Translates to: TPFCLDTIQDFIVGTNTLDHTKW*LLPLQP
Trigger: TGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGGTC...AAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp CCTTCTGCCTGGACACCATCCAAGACTTTATTGTTGGCACTAACACACTTCCCAGGTCGATGTTTGGGTTaGAGAAGGTGTCACAGAAGG +
Preference number: 2 (lower is better)
Translates to: PSAWTPSKTLLLALTHFPGRCLG*RRCHRR
Trigger: CCTTCTGTGACACCTTCTCCAACCCAAACATCGACC...TGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR-3UTR GCA 90 bp TGCCTGGACACCATCCAAGACTTTATTGTTGGCACTAACACACTTCCCAGGAGAGATATCAGCGAGAGATaGTCATGGCCTGCAAACACT +
Preference number: 2 (lower is better)
Translates to: CLDTIQDFIVGTNTLPRRDISER*SWPANT
Trigger: AGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATC...TCTCCTGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp ATTTCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTGCACGGGGATGTTGAGGGAGGTTTCTGGATaGCATGACCTCATTTTGAAC +
Preference number: 2 (lower is better)
Translates to: ISVTLQLTVTFGCCTGMLREVSG*HDLILN
Trigger: GTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCT...CAACATCCCCGTGCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp CGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGTTCAGCGTAAGGGAGGTTTCTGGATaGCATGACCTCATTTTGAAC +
Preference number: 2 (lower is better)
Translates to: RSHHCSVCCFSFLFGFSVREVSG*HDLILN
Trigger: GTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCT...TACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp ATCTTCAGCATTGGGATTCCGTGTGGAGAAGATGAAAGTCAGAAGCATGAAGCTGCTGACCACACCAAATaGTGGCTTCTTCCTCTCCAG +
Preference number: 2 (lower is better)
Translates to: IFSIGIPCGEDESQKHEAADHTK*WLLPLQ
Trigger: CTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGC...AGCTTCATGCTTCTGACTTTCATCTTCTCCACACGGAATCCCAATGCTGAAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
3UTR-3UTR CCA 90 bp ATTATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTGGGTTGGCTGACCACACCAAATaGTGGCTTCTTCCTCTCCAG +
Preference number: 2 (lower is better)
Translates to: IMNSMRMRLNLSRSMFGLADHTK*WLLPLQ
Trigger: CTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGC...CAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR CAA 90 bp TTCACTGTCACCAGGAGGGAGGTTTCTGGATGGCATGACCTCATTTaGAACGTTATAGTGCTATTAGAGTCTTGCCTGCACAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: FTVTRREVSGWHDLI*NVIVLLESCLHKGS
Trigger: ACTGCCTTTGTGCAGGCAAGACTCTAATAGCACTATAACGTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp CGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGTTCAGCGTATGTAACATTAGCTCATaGCCACGGCCTCATGTTTAT +
Preference number: 2 (lower is better)
Translates to: RSHHCSVCCFSFLFGFSVCNISS*PRPHVY
Trigger: ATAAACATGAGGCCGTGGGCATGAGCTAATGTTACA...TACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR GCA 90 bp ACTCCCTTCTGCCTGGACACCATCCAAGACTTTATTGTTGGCACTAACACACTTGATATCAGCGAGAGATaGTCATGGCCTGCAAACACT +
Preference number: 2 (lower is better)
Translates to: TPFCLDTIQDFIVGTNTLDISER*SWPANT
Trigger: AGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATC...AAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR-3UTR TCA 90 bp GATGCTCATGGCCTGCAAACACTATCTTCAGCATTGGGATTCCGTGTGGAGAAGACCGTCATAAACAGCTaGGAGAAAATGGATGTAAAA +
Preference number: 2 (lower is better)
Translates to: DAHGLQTLSSALGFRVEKTVINS*EKMDVK
Trigger: TTTTACATCCATTTTCTCTCAGCTGTTTATGACGGT...CTTCTCCACACGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
3UTR-3UTR CCA 90 bp GTTACCATAGCATCTTCAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGACCAACAGGAACGATTTaGAACAGTGTAACAGGAATG +
Preference number: 2 (lower is better)
Translates to: VTIASSVELCRSHAQRGRPTGTI*NSVTGM
Trigger: CATTCCTGTTACACTGTTCCAAATCGTTCCTGTTGG...TCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTGAAGATGCTATGGTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CCA 90 bp TCATATTTGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAGGACTGAAGTGTTTCTaGAGTGTGCGGGGATGGATG +
Preference number: 2 (lower is better)
Translates to: SYLCKRRSSHRHVTKAPKGLKCF*SVRGWM
Trigger: CATCCATCCCCGCACACTCCAGAAACACTTCAGTCC...TTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACAAATATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp TCATATTTGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAGACCACACCAAATGGTaGCTTCTTCCTCTCCAGCCA +
Preference number: 2 (lower is better)
Translates to: SYLCKRRSSHRHVTKAPKDHTKW*LLPLQP
Trigger: TGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGGTC...TTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACAAATATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR TCA 90 bp CCCACGGCCTCATGTTTATTTTCTCTGGCTCCTAAGGCGATAGGATTTGATTTCACCGTCATAAACAGCTaGGAGAAAATGGATGTAAAA +
Preference number: 2 (lower is better)
Translates to: PTASCLFSLAPKAIGFDFTVINS*EKMDVK
Trigger: TTTTACATCCATTTTCTCTCAGCTGTTTATGACGGT...GAAATCAAATCCTATCGCCTTAGGAGCCAGAGAAAATAAACATGAGGCCGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR CCA 90 bp TCATATTTGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAAGCCACTGTGTCTGCTaGTGTGAACCCCGAGTTATT +
Preference number: 2 (lower is better)
Translates to: SYLCKRRSSHRHVTKAPKSHCVC*CEPRVI
Trigger: AATAACTCGGGGTTCACACCAGCAGACACAGTGGCT...TTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACAAATATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp CCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGCATCCCCCGCTGAGTaGATAAGGAAGAGCCCGTCA +
Preference number: 3 (lower is better)
Translates to: PAWSPQAVQRGSLPGLTPASPAE*IRKSPS
Trigger: TGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGC...TGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CCA 72 bp TCACCAAACAGACTCACTGCCTCCTCGTCCCCAGCATaGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCA +
Preference number: 3 (lower is better)
Translates to: SPNRLTASSSPA*SPQAVQRGSLP
Trigger: TGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGGGGACGAGGAGGCAGTGAGTCTGTTTGGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR TCA 72 bp TGCCCAGTTCCCGGACTCATCCTGTTGACAGCTCGGTaGGTGGAAGGTCCTGCCTGCTCTTCTGGACCAGCC +
Preference number: 3 (lower is better)
Translates to: CPVPGLILLTAR*VEGPACSSGPA
Trigger: GGCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATGAGTCCGGGAACTGGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp CATCCTGTTGACAGCTCGGTGAGTGGAAGGTCCTGCCTGCTCTTCTGGACCAGCGCATCCCCCGCTGAGTaGATAAGGAAGAGCCCGTCA +
Preference number: 3 (lower is better)
Translates to: HPVDSSVSGRSCLLFWTSASPAE*IRKSPS
Trigger: TGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGC...GCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp ACTGAAGTGTTTCTGGAGTGTGCGGGGATGGATGGAAGAAGACGGTGTCAAGGAGCATCCCCCGCTGAGTaGATAAGGAAGAGCCCGTCA +
Preference number: 3 (lower is better)
Translates to: TEVFLECAGMDGRRRCQGASPAE*IRKSPS
Trigger: TGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGC...TCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTAGGTCGATGTTTGGGTaGGAGAAGGTGTCACAGAAG +
Preference number: 3 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCRSMFG*EKVSQK
Trigger: CTTCTGTGACACCTTCTCCAACCCAAACATCGACCT...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR TCA 72 bp ACGCTTCTCGGCATCTCTGCGATCTGCATCCCCCGCTaGGTTGATAAGGAAGAGCCCGTCACAGTCTTAGAA +
Preference number: 3 (lower is better)
Translates to: TLLGISAICIPR*VDKEEPVTVLE
Trigger: TTCTAAGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGATGCCGAGAAGCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR TCA 72 bp CCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTaGCACCAGTGTTATAGCTATGCTCAGAATTATGAA +
Preference number: 3 (lower is better)
Translates to: PHRPCSVDLCQA*HQCYSYAQNYE
Trigger: TTCATAATTCTGAGCATAGCTATAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CCA 72 bp GTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTaGTGCCCAGTTCCCGGACTCATCCTGTTGACAGCT +
Preference number: 3 (lower is better)
Translates to: VQRRLFWSPFQS*CPVPGLILLTA
Trigger: AGCTGTCAACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp AGCCCCCACTACCAACAGCAAAGGCAGCTGCTGGGGAGACCCGTGATGCCTGTTACACATAATCCACTGTaGATTTCTGTGACTCTCCAG +
Preference number: 3 (lower is better)
Translates to: SPHYQQQRQLLGRPVMPVTHNPL*ISVTLQ
Trigger: CTGGAGAGTCACAGAAATCAACAGTGGATTATGTGT...AACAGGCATCACGGGTCTCCCCAGCAGCTGCCTTTGCTGTTGGTAGTGGGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR TCA 72 bp TCCTGCCTGCTCTTCTGGACCAGCCCTTCTTCCACCTaGCTAGCAGTGTGGACATGTAACATTAGCTCATGC +
Preference number: 3 (lower is better)
Translates to: SCLLFWTSPSST*LAVWTCNISSC
Trigger: GCATGAGCTAATGTTACATGTCCACACTGCTAGTCAGGTGGAAGAAGGGCTGGTCCAGAAGAGCAGGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR GCA 72 bp CAAGGGCACGGATATCAGCGAGAGATGCTCATGGCCTaGAAACACTATCTTCAGCATTGGGATTCCGTGTGG +
Preference number: 3 (lower is better)
Translates to: QGHGYQREMLMA*KHYLQHWDSVW
Trigger: CCACACGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
3UTR-3UTR CAA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTTGTTGCACGGGGATGTaGTGTGTAAGTAAAATGGGA +
Preference number: 3 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCCCTGM*CVSKMG
Trigger: TCCCATTTTACTTACACACAACATCCCCGTGCAACA...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTCCAACAGAGTGTGTTTaGGAAATAACGCTCTTGTCA +
Preference number: 3 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCPTECV*EITLLS
Trigger: TGACAAGAGCGTTATTTCCAAAACACACTCTGTTGG...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp GGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGCCAACAGAGTGTGTTTaGGAAATAACGCTCTTGTCA +
Preference number: 3 (lower is better)
Translates to: GFSVGFSGVLSKAGAQFPPTECV*EITLLS
Trigger: TGACAAGAGCGTTATTTCCAAAACACACTCTGTTGG...CGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp CTGTTGATTTCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTGCACGGGGGCGGTGAATGAGACTTaGGAATCGTTCACTGTCACC +
Preference number: 3 (lower is better)
Translates to: LLISVTLQLTVTFGCCTGAVNET*ESFTVT
Trigger: GGTGACAGTGAACGATTCCAAAGTCTCATTCACCGC...CCCCGTGCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAATCAACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp CAAGGGCACGGATATCAGCGAGAGATGCTCATGGCCTGCAAACACTATCTTCAGAGGTCGATGTTTGGGTaGGAGAAGGTGTCACAGAAG +
Preference number: 3 (lower is better)
Translates to: QGHGYQREMLMACKHYLQRSMFG*EKVSQK
Trigger: CTTCTGTGACACCTTCTCCAACCCAAACATCGACCT...CTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR GCA 72 bp CTTGTGTGTGGAGCAGAAGATGATAGCCACTGTGTCTaGTGGTGTGAACCCCGAGTTATTCCGTGTGGAGAA +
Preference number: 3 (lower is better)
Translates to: LVCGAEDDSHCV*WCEPRVIPCGE
Trigger: TTCTCCACACGGAATAACTCGGGGTTCACACCAGCAGACACAGTGGCTATCATCTTCTGCTCCACACACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR GCA 72 bp CAAGGGCACGGATATCAGCGAGAGATGCTCATGGCCTaGAAACACTATCTTCAGCATTGGGATTCCCAAGGT +
Preference number: 3 (lower is better)
Translates to: QGHGYQREMLMA*KHYLQHWDSQG
Trigger: ACCTTGGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR CCA 72 bp ATGAGCAAGGGCACGGATATCAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTCAGCATTGGGATTCCG +
Preference number: 3 (lower is better)
Translates to: MSKGTDISERCS*PANTIFSIGIP
Trigger: CGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTGCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
3UTR CCA 72 bp GTGTGTGGAGCAGAAGATGATAGCCACTGTGTCTGCTaGTGTGAACCCCGAGTTATTCCGTGTGGAGAAGAT +
Preference number: 3 (lower is better)
Translates to: VCGAEDDSHCVC*CEPRVIPCGED
Trigger: ATCTTCTCCACACGGAATAACTCGGGGTTCACACCAGCAGACACAGTGGCTATCATCTTCTGCTCCACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR CCA 72 bp GAGATGCTCATGGCCTGCAAACACTATCTTCAGCATTaGGATTCCCAAGGTGAGGGACTTGTGTGTGGAGCA +
Preference number: 3 (lower is better)
Translates to: EMLMACKHYLQH*DSQGEGLVCGA
Trigger: TGCTCCACACACAAGTCCCTCACCTTGGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR CCA 72 bp ATGAGCAAGGGCACGGATATCAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTCAGCATTGGGATTCCC +
Preference number: 3 (lower is better)
Translates to: MSKGTDISERCS*PANTIFSIGIP
Trigger: GGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTGCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp GGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTCCAACAGAGTGTGTTTaGGAAATAACGCTCTTGTCA +
Preference number: 3 (lower is better)
Translates to: GRPVMPVPTLSRKLRKDAPTECV*EITLLS
Trigger: TGACAAGAGCGTTATTTCCAAAACACACTCTGTTGG...AGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAACCAACAGAGTGTGTTTaGGAAATAACGCTCTTGTCA +
Preference number: 3 (lower is better)
Translates to: QLNFVAVTHREVDVVGGEPTECV*EITLLS
Trigger: TGACAAGAGCGTTATTTCCAAAACACACTCTGTTGG...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR-3UTR CAA 90 bp ATATCAGCGAGAGATGCTCATGGCCTGCAAACACTATCTTCAGCATTGGGATTCTGTCCAGGTCGATGTTaGGGTTGGAGAAGGTGTCAC +
Preference number: 3 (lower is better)
Translates to: ISARDAHGLQTLSSALGFCPGRC*GWRRCH
Trigger: GTGACACCTTCTCCAACCCAAACATCGACCTGGACA...GAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR CCA 72 bp TATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTaGGTTGGAGAAGGTGTCACAGAAGGTGGTGTAGAT +
Preference number: 3 (lower is better)
Translates to: YEDEAELVQVDV*VGEGVTEGGVD
Trigger: ATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp CAGGAAAGACGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGTGTTGCACGGGGATGTaGTGTGTAAGTAAAATGGGA +
Preference number: 3 (lower is better)
Translates to: QERRSHHCSVCCFSFLFGCCTGM*CVSKMG
Trigger: TCCCATTTTACTTACACACAACATCCCCGTGCAACA...CCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp ACTGAAGTGTTTCTGGAGTGTGCGGGGATGGATGGAAGAAGACGGTGTCAAGGATCCAAGACTTTATTGTaGGCACTAACACACTTCCCA +
Preference number: 3 (lower is better)
Translates to: TEVFLECAGMDGRRRCQGSKTLL*ALTHFP
Trigger: TGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGA...TCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
3UTR GCA 72 bp TCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTaGACGGGGATGTTGTGTGTAAGTAAAATGGGAAAC +
Preference number: 3 (lower is better)
Translates to: SVTLQLTVTFGC*TGMLCVSKMGN
Trigger: GTTTCCCATTTTACTTACACACAACATCCCCGTGCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
3UTR-3UTR CAA 90 bp TTTGGAAATAACGCTCTTGTCAAAAACATCGTAAGGCACTTAAACAGGTATATCGCATCCCCCGCTGAGTaGATAAGGAAGAGCCCGTCA +
Preference number: 3 (lower is better)
Translates to: FGNNALVKNIVRHLNRYIASPAE*IRKSPS
Trigger: TGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGC...GATATACCTGTTTAAGTGCCTTACGATGTTTTTGACAAGAGCGTTATTTCCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CCA 72 bp GAATCGTTCACTGTCACCAGGAGGGAGGTTTCTGGATaGCATGACCTCATTTTGAACGTTATAGTGCTATTA +
Preference number: 3 (lower is better)
Translates to: ESFTVTRREVSG*HDLILNVIVLL
Trigger: TAATAGCACTATAACGTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAACGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CCCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCTCTCAGGTGCACCAGTaGGCTGGTCAGCTCCTCCGT +
Preference number: 4 (lower is better)
Translates to: PSMVPTGRAAWISARPDTSQVHQ*AGQLLR
Trigger: ACGGAGGAGCTGACCAGCGCACTGGTGCACCTGAGA...GGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CCCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCTATCTCTGGCTTCAGTaGTCCCCCGTTCACTCCGAC +
Preference number: 4 (lower is better)
Translates to: PSMVPTGRAAWISARPDTYLWLQ*SPVHSD
Trigger: GTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATA...GGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAACACAGGGGGTGGCATaGAACCTACTGTCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: PAWSPQAVQRGSLPGLTPTQGVA*NLLSAD
Trigger: GTCTGCAGACAGTAGGTTGCATGCCACCCCCTGTGT...TGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
3UTR CAA 72 bp AGGAAGGCTGGCGCCACCCGAGTCACACTGTCGGCCTaGTCAGCTTCACTCCCTTCTGCCTGGACACCATCC +
Preference number: 4 (lower is better)
Translates to: RKAGATRVTLSA*SASLPSAWTPS
Trigger: GGATGGTGTCCAGGCAGAAGGGAGTGAAGCTGACAAGGCCGACAGTGTGACTCGGGTGGCGCCAGCCTTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
CDS-3UTR GCA 90 bp AAGGCACCGAAGAGGATGAACCGAGGAAAAGCAGCAGGAGCACCGGAGTCACAATCTCAGGTGCACCAGTaGGCTGGTCAGCTCCCCCGT +
Preference number: 4 (lower is better)
Translates to: KAPKRMNRGKAAGAPESQSQVHQ*AGQLPR
Trigger: ACGGGGGAGCTGACCAGCGCACTGGTGCACCTGAGA...TTGTGACTCCGGTGCTCCTGCTGCTTTTCCTCGGTTCATCCTCTTCGGTGCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS-3UTR CCA 90 bp TGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGTGTTACAGGAGAATCTGAGCTaGGTGGTAGATGAGCAAGGG +
Preference number: 4 (lower is better)
Translates to: WSPQAVQRGSLPGLTPVLQENLS*VVDEQG
Trigger: CCCTTGCTCATCTACCACCCAGCTCAGATTCTCCTG...TAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp GCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTTTCTCAGGTGCACCAGTaGGCTGGTCAGCTCCTCCGT +
Preference number: 4 (lower is better)
Translates to: AFLESFPKLVPSSRTHPVSQVHQ*AGQLLR
Trigger: ACGGAGGAGCTGACCAGCGCACTGGTGCACCTGAGA...AACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp GGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGTATCTCTGGCTTCAGTaGTCCCCCGTTCACTCCGAC +
Preference number: 4 (lower is better)
Translates to: GFSVGFSGVLSKAGAQFPYLWLQ*SPVHSD
Trigger: GTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATA...CGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp AGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTCCCGGACGATCTGTCCAATaGCAAGAGGAACCACCACCG +
Preference number: 4 (lower is better)
Translates to: RPVMPVPTLSRKLRKDAPGRSVQ*QEEPPP
Trigger: CGGTGGTGGTTCCTCTTGTCATTGGACAGATCGTCC...GGGAGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp GCTGGGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACTGTGTCTGCTGGTGTaGACCCCGAGTTATTCCGTG +
Preference number: 4 (lower is better)
Translates to: AGETRDACSNTKQEAQERLCLLV*TPSYSV
Trigger: CACGGAATAACTCGGGGTTCACACCAGCAGACACAG...TCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp TCTCTGCGATCTGCATCCCCCGCTGAGTTGATAAGGAAGAGCCCGTCACAGTCTGAGCTGGGTGGTAGATaGGCAAGGGCACGGATATCA +
Preference number: 4 (lower is better)
Translates to: SLRSASPAELIRKSPSQSELGGR*ARARIS
Trigger: TGATATCCGTGCCCTTGCTCATCTACCACCCAGCTC...AGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACACAGGGGGTGGCATaGAACCTACTGTCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: QLNFVAVTHREVDVVGGETQGVA*NLLSAD
Trigger: GTCTGCAGACAGTAGGTTGCATGCCACCCCCTGTGT...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp TGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGTGTTATTCCACCAACTGCCTTaGTTAAAATCACGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: WSPQAVQRGSLPGLTPVLFHQLP*LKSRQK
Trigger: CTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAA...TAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp AGCCCCCACTACCAACAGCAAAGGCAGCTGCTGGGGAGACCCGTGATGCCTGTTTCACTCCCTTCTGCCTaGACACCATCCAAGACTTTA +
Preference number: 4 (lower is better)
Translates to: SPHYQQQRQLLGRPVMPVSLPSA*TPSKTL
Trigger: TAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGTGA...AACAGGCATCACGGGTCTCCCCAGCAGCTGCCTTTGCTGTTGGTAGTGGGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp CCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAACCGTCATAAACAGCTaGGAGAAAATGGATGTAAAA +
Preference number: 4 (lower is better)
Translates to: PAWSPQAVQRGSLPGLTPTVINS*EKMDVK
Trigger: TTTTACATCCATTTTCTCTCAGCTGTTTATGACGGT...TGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp GCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTTGAGCTGGGTGGTAGATaGGCAAGGGCACGGATATCA +
Preference number: 4 (lower is better)
Translates to: AFLESFPKLVPSSRTHPVELGGR*ARARIS
Trigger: TGATATCCGTGCCCTTGCTCATCTACCACCCAGCTC...AACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGTTCAGCGTATCTCAGGTGCACCAGTaGGCTGGTCAGCTCCTCCGT +
Preference number: 4 (lower is better)
Translates to: RSHHCSVCCFSFLFGFSVSQVHQ*AGQLLR
Trigger: ACGGAGGAGCTGACCAGCGCACTGGTGCACCTGAGA...TACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp AGCCCCCACTACCAACAGCAAAGGCAGCTGCTGGGGAGACCCGTGATGCCTGTTAAGAAAGAGCCATATTaGTGCTGGGAAGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: SPHYQQQRQLLGRPVMPVKKEPY*CWEEGK
Trigger: CTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTT...AACAGGCATCACGGGTCTCCCCAGCAGCTGCCTTTGCTGTTGGTAGTGGGGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp GCTGGGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGAGACCACACCAAATGGTaGCTTCTTCCTCTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: AGETRDACSNTKQEAQERDHTKW*LLPLQP
Trigger: TGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGGTC...TCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTATGACAGTCCACTGTTaGAGAATATCGTTGCGACGG +
Preference number: 4 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCMTVHC*RISLRR
Trigger: CCGTCGCAACGATATTCTTCAACAGTGGACTGTCAT...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp AGCCCCCACTACCAACAGCAAAGGCAGCTGCTGGGGAGACCCGTGATGCCTGTTATGCAACCTACTGTCTaGAGACCTTTTAAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: SPHYQQQRQLLGRPVMPVMQPTV*RPFKSH
Trigger: GTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCAT...AACAGGCATCACGGGTCTCCCCAGCAGCTGCCTTTGCTGTTGGTAGTGGGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CATCCTGTTGACAGCTCGGTGAGTGGAAGGTCCTGCCTGCTCTTCTGGACCAGCGAGATGCTCATGGCCTaGAAACACTATCTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: HPVDSSVSGRSCLLFWTSEMLMA*KHYLQH
Trigger: ATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTC...GCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp GCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTTGCTGACCACACCAAATaGTGGCTTCTTCCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: AFLESFPKLVPSSRTHPVADHTK*WLLPLQ
Trigger: CTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGC...AACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp AAGGCTGTGGGGGTGAGACTTGAAAACCTTTGTGCTCCATGGAGGCAGCACACTCAGGAGAATCTGAGCTaGGTGGTAGATGAGCAAGGG +
Preference number: 4 (lower is better)
Translates to: KAVGVRLENLCAPWRQHTQENLS*VVDEQG
Trigger: CCCTTGCTCATCTACCACCCAGCTCAGATTCTCCTG...AGTGTGCTGCCTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp GGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGTCACTCCCTTCTGCCTaGACACCATCCAAGACTTTA +
Preference number: 4 (lower is better)
Translates to: GFSVGFSGVLSKAGAQFPSLPSA*TPSKTL
Trigger: TAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGTGA...CGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGGACGATCTGTCCAATaGCAAGAGGAACCACCACCG +
Preference number: 4 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCGRSVQ*QEEPPP
Trigger: CGGTGGTGGTTCCTCTTGTCATTGGACAGATCGTCC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTAGCATGAAGCTCAGCTaGACGGAGACTATTATGAAC +
Preference number: 4 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCSMKLS*TETIMN
Trigger: GTTCATAATAGTCTCCGTTCAGCTGAGCTTCATGCT...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp GGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGAAAGAGCCATATTGCTaGTGGGAAGAAGGCAAGTGT +
Preference number: 4 (lower is better)
Translates to: GFSVGFSGVLSKAGAQFPKEPYC*WEEGKC
Trigger: ACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTT...CGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp GGCACGGATATCAGCGAGAGATGCTCATGGCCTGCAAACACTATCTTCAGCATTACACAGGGGGTGGCATaGAACCTACTGTCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: GTDISERCSWPANTIFSITQGVA*NLLSAD
Trigger: GTCTGCAGACAGTAGGTTGCATGCCACCCCCTGTGT...AATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS-3UTR GCA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTGAGATGCTCATGGCCTaGAAACACTATCTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCEMLMA*KHYLQH
Trigger: ATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTC...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp GGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGACGCTGATATCAGCGAGAGATaGTCATGGCCTGCAAACACT +
Preference number: 4 (lower is better)
Translates to: GRPVMPVPTLSRKLRKDADISER*SWPANT
Trigger: AGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATC...AGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp GTCCAGGTCGATGTTTGGGTTGGAGAAGGTGTCACAGAAGGTGGTGTAGATGATTATCTCTGGCTTCAGTaGTCCCCCGTTCACTCCGAC +
Preference number: 4 (lower is better)
Translates to: VQVDVWVGEGVTEGGVDDYLWLQ*SPVHSD
Trigger: GTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATA...ATCATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
CDS-3UTR CCA 90 bp AGACTTTGGAATCGTTCACTGTCACCAGGAGGGAGGTTTCTGGATGGCATGACCGCTGACCACACCAAATaGTGGCTTCTTCCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: RLWNRSLSPGGRFLDGMTADHTK*WLLPLQ
Trigger: CTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGC...GGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAACGATTCCAAAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CCCAAAGCACTGTCCGAGTTCACGGCAACACTCACCAGGACTTTCTCTGAAGCAGGTCGATGTTTGGGTTaGAGAAGGTGTCACAGAAGG +
Preference number: 4 (lower is better)
Translates to: PKALSEFTATLTRTFSEAGRCLG*RRCHRR
Trigger: CCTTCTGTGACACCTTCTCCAACCCAAACATCGACC...TGCTTCAGAGAAAGTCCTGGTGAGTGTTGCCGTGAACTCGGACAGTGCTTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR CCA 90 bp AACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTC +
Preference number: 4 (lower is better)
Translates to: NFVAVTHREVDVVGGETSSERCS*PANTIF
Trigger: GAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCT...ACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp GGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTC +
Preference number: 4 (lower is better)
Translates to: GFSGVLSKAGAQFPDSSCSERCS*PANTIF
Trigger: GAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCT...ACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp ACTGAAGTGTTTCTGGAGTGTGCGGGGATGGATGGAAGAAGACGGTGTCAAGGACAGGAGAATCTGAGCTaGGTGGTAGATGAGCAAGGG +
Preference number: 4 (lower is better)
Translates to: TEVFLECAGMDGRRRCQGQENLS*VVDEQG
Trigger: CCCTTGCTCATCTACCACCCAGCTCAGATTCTCCTG...TCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR GCA 90 bp ACTATTATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTGGGTCTCAGGTGCACCAGTaGGCTGGTCAGCTCCTCCGT +
Preference number: 4 (lower is better)
Translates to: TIMNSMRMRLNLSRSMFGSQVHQ*AGQLLR
Trigger: ACGGAGGAGCTGACCAGCGCACTGGTGCACCTGAGA...CCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAATAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
CDS-3UTR GCA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTATTTGGATGAAAAGATaGAGTCTCAGGTGCACCAGT +
Preference number: 4 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCIWMKR*SLRCTS
Trigger: ACTGGTGCACCTGAGACTGCATCTTTTCATCCAAAT...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp AACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTAAAGAGCCATATTGCTaGTGGGAAGAAGGCAAGTGT +
Preference number: 4 (lower is better)
Translates to: NFVAVTHREVDVVGGETSKEPYC*WEEGKC
Trigger: ACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTT...ACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp AAGGCACCGAAGAGGATGAACCGAGGAAAAGCAGCAGGAGCACCGGAGTCACAAAAGAAAGAGCCATATTaGTGCTGGGAAGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: KAPKRMNRGKAAGAPESQKKEPY*CWEEGK
Trigger: CTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTT...TTGTGACTCCGGTGCTCCTGCTGCTTTTCCTCGGTTCATCCTCTTCGGTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS-3UTR GCA 90 bp GGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGATGCAACCTACTGTCTaGAGACCTTTTAAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: GFSVGFSGVLSKAGAQFPMQPTV*RPFKSH
Trigger: GTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCAT...CGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGGACACAGTTATCTCTaGCTTCAGTGGTCCCCCGTT +
Preference number: 4 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCGHSYL*LQWSPV
Trigger: AACGGGGGACCACTGAAGCCAGAGATAACTGTGTCC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp AATCTGAGCTGGGTGGTAGATGAGCAAGGGCACGGATATCAGCGAGAGATGCTCGAGCCATATTGCTGCTaGGAAGAAGGCAAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: NLSWVVDEQGHGYQREMLEPYCC*EEGKCE
Trigger: TTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTC...GAGCATCTCTCGCTGATATCCGTGCCCTTGCTCATCTACCACCCAGCTCAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR CCA 90 bp GGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGGACTCATCCTGTTTCCACCAACTGCCTTaGTTAAAATCACGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: GFSGVLSKAGAQFPDSSCFHQLP*LKSRQK
Trigger: CTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAA...ACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGACCACACCAAATGGTaGCTTCTTCCTCTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCDHTKW*LLPLQP
Trigger: TGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGGTC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CTGTTGATTTCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTGCACGGGGGGTCGATGTTTGGGTTaGAGAAGGTGTCACAGAAGG +
Preference number: 4 (lower is better)
Translates to: LLISVTLQLTVTFGCCTGGRCLG*RRCHRR
Trigger: CCTTCTGTGACACCTTCTCCAACCCAAACATCGACC...CCCCGTGCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAATCAACAG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR TCA 90 bp AGGCTGAACTTGTCCAGGTCGATGTTTGGGTTGGAGAAGGTGTCACAGAAGGTGATGACAGTCCACTGTTaGAGAATATCGTTGCGACGG +
Preference number: 4 (lower is better)
Translates to: RLNLSRSMFGLEKVSQKVMTVHC*RISLRR
Trigger: CCGTCGCAACGATATTCTTCAACAGTGGACTGTCAT...CACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
CDS-3UTR TCA 90 bp GCTGGGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGAGTGACTGATAAGAGCTaGAGAAAGAGCCATATTGCT +
Preference number: 4 (lower is better)
Translates to: AGETRDACSNTKQEAQERVTDKS*RKSHIA
Trigger: AGCAATATGGCTCTTTCTTCAGCTCTTATCAGTCAC...TCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp AAGGCTGTGGGGGTGAGACTTGAAAACCTTTGTGCTCCATGGAGGCAGCACACTAGCATGAAGCTCAGCTaGACGGAGACTATTATGAAC +
Preference number: 4 (lower is better)
Translates to: KAVGVRLENLCAPWRQHTSMKLS*TETIMN
Trigger: GTTCATAATAGTCTCCGTTCAGCTGAGCTTCATGCT...AGTGTGCTGCCTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp AATCCACTGTTGATTTCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTGCGAGCTGGGTGGTAGATaGGCAAGGGCACGGATATCA +
Preference number: 4 (lower is better)
Translates to: NPLLISVTLQLTVTFGCCELGGR*ARARIS
Trigger: TGATATCCGTGCCCTTGCTCATCTACCACCCAGCTC...GCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAATCAACAGTGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR CCA 90 bp CAGGAAAGACGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGGGTCGATGTTTGGGTTaGAGAAGGTGTCACAGAAGG +
Preference number: 4 (lower is better)
Translates to: QERRSHHCSVCCFSFLFGGRCLG*RRCHRR
Trigger: CCTTCTGTGACACCTTCTCCAACCCAAACATCGACC...CCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
3UTR CAA 72 bp CGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTaGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTT +
Preference number: 4 (lower is better)
Translates to: RSHHCSVCCFSF*FGFSVGFSGVL
Trigger: AAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CAA 72 bp CTCCCTTCTGCCTGGACACCATCCAAGACTTTATTGTaGGCACTAACACACTTCCCAGGAGAATCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: LPSAWTPSKTLL*ALTHFPGESEL
Trigger: CAGCTCAGATTCTCCTGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR TCA 90 bp TGGAATCGTTCACTGTCACCAGGAGGGAGGTTTCTGGATGGCATGACCTCATTTATGACAGTCCACTGTTaGAGAATATCGTTGCGACGG +
Preference number: 4 (lower is better)
Translates to: WNRSLSPGGRFLDGMTSFMTVHC*RISLRR
Trigger: CCGTCGCAACGATATTCTTCAACAGTGGACTGTCAT...AAATGAGGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAACGATTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp AAAGAACCACTCGGTGAATCAAAGTGTGCGGTGAATGAGACTTTGGAATCGTTCCTGTGTCTGCTGGTGTaGACCCCGAGTTATTCCGTG +
Preference number: 4 (lower is better)
Translates to: KEPLGESKCAVNETLESFLCLLV*TPSYSV
Trigger: CACGGAATAACTCGGGGTTCACACCAGCAGACACAG...GAACGATTCCAAAGTCTCATTCACCGCACACTTTGATTCACCGAGTGGTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp AAGGGTTGCGTCTACAACTCTGGCAGGCAGACAGTGTCTACTTCCTCTAAAGCCAAAGAGCCATATTGCTaGTGGGAAGAAGGCAAGTGT +
Preference number: 4 (lower is better)
Translates to: KGCVYNSGRQTVSTSSKAKEPYC*WEEGKC
Trigger: ACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTT...GGCTTTAGAGGAAGTAGACACTGTCTGCCTGCCAGAGTTGTAGACGCAACCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp AAGGGTTGCGTCTACAACTCTGGCAGGCAGACAGTGTCTACTTCCTCTAAAGCCGAGATGCTCATGGCCTaGAAACACTATCTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: KGCVYNSGRQTVSTSSKAEMLMA*KHYLQH
Trigger: ATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTC...GGCTTTAGAGGAAGTAGACACTGTCTGCCTGCCAGAGTTGTAGACGCAACCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGATATCAGCGAGAGATaGTCATGGCCTGCAAACACT +
Preference number: 4 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCDISER*SWPANT
Trigger: AGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp AAAGAACCACTCGGTGAATCAAAGTGTGCGGTGAATGAGACTTTGGAATCGTTCTATCTCTGGCTTCAGTaGTCCCCCGTTCACTCCGAC +
Preference number: 4 (lower is better)
Translates to: KEPLGESKCAVNETLESFYLWLQ*SPVHSD
Trigger: GTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATA...GAACGATTCCAAAGTCTCATTCACCGCACACTTTGATTCACCGAGTGGTTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGTTCAGCGTAGAGCCATATTGCTGCTaGGAAGAAGGCAAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: RSHHCSVCCFSFLFGFSVEPYCC*EEGKCE
Trigger: TTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTC...TACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGAGCCATATTGCTGCTaGGAAGAAGGCAAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCEPYCC*EEGKCE
Trigger: TTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CAA 72 bp TCACTCCCTTCTGCCTGGACACCATCCAAGACTTTATaGTTGGCACTAACACACTTCCCAGGAGAATCTGAG +
Preference number: 4 (lower is better)
Translates to: SLPSAWTPSKTL*LALTHFPGESE
Trigger: CTCAGATTCTCCTGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
3UTR CAA 72 bp ACTATCTTCAGCATTGGGATTCCCAAGGTGAGGGACTaGTGTGTGGAGCAGAAGATGATAGCCACTGTGTCT +
Preference number: 4 (lower is better)
Translates to: TIFSIGIPKVRD*CVEQKMIATVS
Trigger: AGACACAGTGGCTATCATCTTCTGCTCCACACACAAGTCCCTCACCTTGGGAATCCCAATGCTGAAGATAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
CDS-3UTR TCA 90 bp CAGTTGAACTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCGTCATAAACAGCTaGGAGAAAATGGATGTAAAA +
Preference number: 4 (lower is better)
Translates to: QLNFVAVTHREVDVVGGETVINS*EKMDVK
Trigger: TTTTACATCCATTTTCTCTCAGCTGTTTATGACGGT...TTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp TCTCTGCGATCTGCATCCCCCGCTGAGTTGATAAGGAAGAGCCCGTCACAGTCTACCGTCATAAACAGCTaGGAGAAAATGGATGTAAAA +
Preference number: 4 (lower is better)
Translates to: SLRSASPAELIRKSPSQSTVINS*EKMDVK
Trigger: TTTTACATCCATTTTCTCTCAGCTGTTTATGACGGT...AGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp GTCCAGGTCGATGTTTGGGTTGGAGAAGGTGTCACAGAAGGTGGTGTAGATGATAAAGAGCCATATTGCTaGTGGGAAGAAGGCAAGTGT +
Preference number: 4 (lower is better)
Translates to: VQVDVWVGEGVTEGGVDDKEPYC*WEEGKC
Trigger: ACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTT...ATCATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR GCA 90 bp ACTAAGCAGGAAGCTCAGGAAAGACGCTCCCACCACTGTTCAGTATGCTGCTTTAAGAAAGAGCCATATTaGTGCTGGGAAGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: TKQEAQERRSHHCSVCCFKKEPY*CWEEGK
Trigger: CTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTT...AAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTGAGCTTCCTGCTTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp ACTGAAGTGTTTCTGGAGTGTGCGGGGATGGATGGAAGAAGACGGTGTCAAGGAATGCAACCTACTGTCTaGAGACCTTTTAAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: TEVFLECAGMDGRRRCQGMQPTV*RPFKSH
Trigger: GTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCAT...TCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR CCA 90 bp AAAGAACCACTCGGTGAATCAAAGTGTGCGGTGAATGAGACTTTGGAATCGTTCGCTGACCACACCAAATaGTGGCTTCTTCCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: KEPLGESKCAVNETLESFADHTK*WLLPLQ
Trigger: CTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGC...GAACGATTCCAAAGTCTCATTCACCGCACACTTTGATTCACCGAGTGGTTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp TGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAACTCATGACACAGGGGGTGGCATaGAACCTACTGTCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: CVKGEVATDMLLKLPKLMTQGVA*NLLSAD
Trigger: GTCTGCAGACAGTAGGTTGCATGCCACCCCCTGTGT...CATGAGTTTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp AGGAACCACCACCGTCATAAACAGCTGAGAGAAAATGGATGTAAAAGGCACCGAGAGCCATATTGCTGCTaGGAAGAAGGCAAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: RNHHRHKQLRENGCKRHREPYCC*EEGKCE
Trigger: TTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTC...TCGGTGCCTTTTACATCCATTTTCTCTCAGCTGTTTATGACGGTGGTGGTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR CCA 90 bp ATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTGGGTTGGAGTTCCACCAACTGCCTTaGTTAAAATCACGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: MNSMRMRLNLSRSMFGLEFHQLP*LKSRQK
Trigger: CTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAA...CTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS-3UTR CCA 90 bp CCCACGGCCTCATGTTTATTTTCTCTGGCTCCTAAGGCGATAGGATTTGATTTCAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTC +
Preference number: 4 (lower is better)
Translates to: PTASCLFSLAPKAIGFDFSERCS*PANTIF
Trigger: GAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCT...GAAATCAAATCCTATCGCCTTAGGAGCCAGAGAAAATAAACATGAGGCCGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp CCCACGGCCTCATGTTTATTTTCTCTGGCTCCTAAGGCGATAGGATTTGATTTCAAGAAAGAGCCATATTaGTGCTGGGAAGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: PTASCLFSLAPKAIGFDFKKEPY*CWEEGK
Trigger: CTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTT...GAAATCAAATCCTATCGCCTTAGGAGCCAGAGAAAATAAACATGAGGCCGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
3UTR CAA 72 bp GAGACTATTATGAACAGTATGAGGATGAGGCTGAACTaGTCCAGGTCGATGTTTGGGTTGGAGAAGGTGTCA +
Preference number: 4 (lower is better)
Translates to: ETIMNSMRMRLN*SRSMFGLEKVS
Trigger: TGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAATAGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR TCA 90 bp TCATATTTGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAGGACGATCTGTCCAATaGCAAGAGGAACCACCACCG +
Preference number: 4 (lower is better)
Translates to: SYLCKRRSSHRHVTKAPKGRSVQ*QEEPPP
Trigger: CGGTGGTGGTTCCTCTTGTCATTGGACAGATCGTCC...TTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACAAATATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp ATTATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTGGGTTGAAAGAGCCATATTGCTaGTGGGAAGAAGGCAAGTGT +
Preference number: 4 (lower is better)
Translates to: IMNSMRMRLNLSRSMFGLKEPYC*WEEGKC
Trigger: ACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTT...CAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR CCA 90 bp CTGTTGATTTCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTGCACGGGGCACTATCTTCAGCATTaGGATTCTTATGAACAGTAT +
Preference number: 4 (lower is better)
Translates to: LLISVTLQLTVTFGCCTGHYLQH*DSYEQY
Trigger: ATACTGTTCATAAGAATCCCAATGCTGAAGATAGTG...CCCCGTGCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAATCAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209490.2
3UTR CAA 72 bp ACAGGAACGATTTGGAACAGTGTAACAGGAATGTGCTaGGAACCAGCTGTGGAATGTGAACACATAATCCAC +
Preference number: 4 (lower is better)
Translates to: TGTIWNSVTGMC*EPAVECEHIIH
Trigger: GTGGATTATGTGTTCACATTCCACAGCTGGTTCCAAGCACATTCCTGTTACACTGTTCCAAATCGTTCCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
CDS-3UTR GCA 90 bp AATACTGTACTACCCTTGGCAGTAGCCAACAGAGTGTGTTTTGGAAATAACGCTAAGAAAGAGCCATATTaGTGCTGGGAAGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: NTVLPLAVANRVCFGNNAKKEPY*CWEEGK
Trigger: CTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTT...AGCGTTATTTCCAAAACACACTCTGTTGGCTACTGCCAAGGGTAGTACAGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp ATTATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTGGGTTGATGCAACCTACTGTCTaGAGACCTTTTAAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: IMNSMRMRLNLSRSMFGLMQPTV*RPFKSH
Trigger: GTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCAT...CAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS-3UTR GCA 90 bp TCATATTTGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAGATAGCCACTGTGTCTaGTGGTGTGAACCCCGAGTT +
Preference number: 4 (lower is better)
Translates to: SYLCKRRSSHRHVTKAPKDSHCV*WCEPRV
Trigger: AACTCGGGGTTCACACCAGCAGACACAGTGGCTATC...TTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACAAATATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000211286.2
CDS-3UTR TCA 90 bp TGTTTTGGAAATAACGCTCTTGTCAAAAACATCGTAAGGCACTTAAACAGGTATATGACAGTCCACTGTTaGAGAATATCGTTGCGACGG +
Preference number: 4 (lower is better)
Translates to: CFGNNALVKNIVRHLNRYMTVHC*RISLRR
Trigger: CCGTCGCAACGATATTCTTCAACAGTGGACTGTCAT...ATACCTGTTTAAGTGCCTTACGATGTTTTTGACAAGAGCGTTATTTCCAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR GCA 90 bp TTTGGAAATAACGCTCTTGTCAAAAACATCGTAAGGCACTTAAACAGGTATATCGATATCAGCGAGAGATaGTCATGGCCTGCAAACACT +
Preference number: 4 (lower is better)
Translates to: FGNNALVKNIVRHLNRYIDISER*SWPANT
Trigger: AGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATC...GATATACCTGTTTAAGTGCCTTACGATGTTTTTGACAAGAGCGTTATTTCCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CCA 90 bp TGTTTTGGAAATAACGCTCTTGTCAAAAACATCGTAAGGCACTTAAACAGGTATGAGCCATATTGCTGCTaGGAAGAAGGCAAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: CFGNNALVKNIVRHLNRYEPYCC*EEGKCE
Trigger: TTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTC...ATACCTGTTTAAGTGCCTTACGATGTTTTTGACAAGAGCGTTATTTCCAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS CCA 90 bp TATCGTTGCGACGGCAATGTAGGACACAGTTATCTCTGGCTTCAGTaGTCCCCCGTTCACTCCGACCGACGGCTCGAGCTTAGCGGCGCC +
Preference number: 5 (lower is better)
Translates to: YRCDGNVGHSYLWLQ*SPVHSDRRLELSGA
Trigger: GGCGCCGCTAAGCTCGAGCCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACTGTGTCCTACATTGCCGTCGCAACGATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp CCCAGCATGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCTTTCCACCAACTGCCTaGGTTAAAATCACGGCAGAA +
Preference number: 5 (lower is better)
Translates to: PSMVPTGRAAWISARPDTFPPTA*VKITAE
Trigger: TTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAA...GGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS GCA 90 bp AAGTGTGAAGATTTGGATGAAAAGATGCAGTCTCAGGTGCACCAGTaGGCTGGTCAGCTCCCCCGTTCACTCCGACCGACGGCTCGAGCT +
Preference number: 5 (lower is better)
Translates to: KCEDLDEKMQSQVHQ*AGQLPRSLRPTARA
Trigger: AGCTCGAGCCGTCGGTCGGAGTGAACGGGGGAGCTGACCAGCGCACTGGTGCACCTGAGACTGCATCTTTTCATCCAAATCTTCACACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS-3UTR CAA 90 bp TGGTCCCCACAGGCCGTGCAGCGTGGATCTCTGCCAGGCCTGACACCAGTGTTATTTCCACCAACTGCCTaGGTTAAAATCACGGCAGAA +
Preference number: 5 (lower is better)
Translates to: WSPQAVQRGSLPGLTPVLFPPTA*VKITAE
Trigger: TTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAA...TAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS CCA 90 bp GTTGAAGAATATCGTTGCGACGGCAATGTAGGACACAGTTATCTCTaGCTTCAGTGGTCCCCCGTTCACTCCGACCGACGGCTCGAGCTT +
Preference number: 5 (lower is better)
Translates to: VEEYRCDGNVGHSYL*LQWSPVHSDRRLEL
Trigger: AAGCTCGAGCCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACTGTGTCCTACATTGCCGTCGCAACGATATTCTTCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp GCTGGGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGAAGGTCGATGTTTGGGTaGGAGAAGGTGTCACAGAAG +
Preference number: 5 (lower is better)
Translates to: AGETRDACSNTKQEAQERRSMFG*EKVSQK
Trigger: CTTCTGTGACACCTTCTCCAACCCAAACATCGACCT...TCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp AAGGCTGTGGGGGTGAGACTTGAAAACCTTTGTGCTCCATGGAGGCAGCACACTTGTCCAGGTCGATGTTaGGGTTGGAGAAGGTGTCAC +
Preference number: 5 (lower is better)
Translates to: KAVGVRLENLCAPWRQHTCPGRC*GWRRCH
Trigger: GTGACACCTTCTCCAACCCAAACATCGACCTGGACA...AGTGTGCTGCCTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp CTTTGTCGCAGTCACGCACAGAGAGGTAGATGTGGTCGGCGGGGAAACCAGTGTTTTCCACCAACTGCCTaGGTTAAAATCACGGCAGAA +
Preference number: 5 (lower is better)
Translates to: LCRSHAQRGRCGRRGNQCFPPTA*VKITAE
Trigger: TTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAA...ACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp ACTGAAGTGTTTCTGGAGTGTGCGGGGATGGATGGAAGAAGACGGTGTCAAGGATGTCCAGGTCGATGTTaGGGTTGGAGAAGGTGTCAC +
Preference number: 5 (lower is better)
Translates to: TEVFLECAGMDGRRRCQGCPGRC*GWRRCH
Trigger: GTGACACCTTCTCCAACCCAAACATCGACCTGGACA...TCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR CAA 90 bp AGACTTTGGAATCGTTCACTGTCACCAGGAGGGAGGTTTCTGGATGGCATGACCAGGTCGATGTTTGGGTaGGAGAAGGTGTCACAGAAG +
Preference number: 5 (lower is better)
Translates to: RLWNRSLSPGGRFLDGMTRSMFG*EKVSQK
Trigger: CTTCTGTGACACCTTCTCCAACCCAAACATCGACCT...GGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAACGATTCCAAAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp GGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCCCAGTTCCCGTCCAAGACTTTATTGTaGGCACTAACACACTTCCCA +
Preference number: 5 (lower is better)
Translates to: GFSVGFSGVLSKAGAQFPSKTLL*ALTHFP
Trigger: TGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGA...CGGGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp CAGGAAAGACGCTCCCACCACTGTTCAGTATGCTGCTTTAGCTTCTTGTTTGGGAGGTCGATGTTTGGGTaGGAGAAGGTGTCACAGAAG +
Preference number: 5 (lower is better)
Translates to: QERRSHHCSVCCFSFLFGRSMFG*EKVSQK
Trigger: CTTCTGTGACACCTTCTCCAACCCAAACATCGACCT...CCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp GCTGGGGAGACCCGTGATGCCTGTTCCAACACTAAGCAGGAAGCTCAGGAAAGATCCAAGACTTTATTGTaGGCACTAACACACTTCCCA +
Preference number: 5 (lower is better)
Translates to: AGETRDACSNTKQEAQERSKTLL*ALTHFP
Trigger: TGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGA...TCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp TCTCTGCGATCTGCATCCCCCGCTGAGTTGATAAGGAAGAGCCCGTCACAGTCTCCATCCAAGACTTTATaGTTGGCACTAACACACTTC +
Preference number: 5 (lower is better)
Translates to: SLRSASPAELIRKSPSQSPSKTL*LALTHF
Trigger: GAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGG...AGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS TCA 90 bp CCAGTGCGCTGGTCAGCTCCTCCGTTTTTAATGACAGTCCACTGTTaGAGAATATCGTTGCGACGGCAATGTAGGACACAGTTATCTCTG +
Preference number: 5 (lower is better)
Translates to: PVRWSAPPFLMTVHC*RISLRRQCRTQLSL
Trigger: CAGAGATAACTGTGTCCTACATTGCCGTCGCAACGATATTCTTCAACAGTGGACTGTCATTAAAAACGGAGGAGCTGACCAGCGCACTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp AATCCACTGTTGATTTCTGTGACTCTCCAGCTGACTGTGACATTTGGGTGTTGCTGTCCAGGTCGATGTTaGGGTTGGAGAAGGTGTCAC +
Preference number: 5 (lower is better)
Translates to: NPLLISVTLQLTVTFGCCCPGRC*GWRRCH
Trigger: GTGACACCTTCTCCAACCCAAACATCGACCTGGACA...GCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAATCAACAGTGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
CDS-3UTR CAA 90 bp AAGGGTTGCGTCTACAACTCTGGCAGGCAGACAGTGTCTACTTCCTCTAAAGCCCCATCCAAGACTTTATaGTTGGCACTAACACACTTC +
Preference number: 5 (lower is better)
Translates to: KGCVYNSGRQTVSTSSKAPSKTL*LALTHF
Trigger: GAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGG...GGCTTTAGAGGAAGTAGACACTGTCTGCCTGCCAGAGTTGTAGACGCAACCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000211286.2
CDS GCA 90 bp GTAGATGAGCAAGGGCACGGATATCAGCGAGAGATGCTCATGGCCTaGAAACACTATCTTCAGCATTGGGATTCTTATGAACAGTATGAG +
Preference number: 5 (lower is better)
Translates to: VDEQGHGYQREMLMA*KHYLQHWDSYEQYE
Trigger: CTCATACTGTTCATAAGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTGCTCATCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209490.2
CDS-3UTR CAA 90 bp CTTCTTGTTTGGGTTCAGCGTAGGCTTTTCTGGAGTCCTTTCCAAAGCTGGTGCGGCAAGTGTGAAGATTaGGATGAAAAGATGCAGTCT +
Preference number: 5 (lower is better)
Translates to: LLVWVQRRLFWSPFQSWCGKCED*DEKMQS
Trigger: AGACTGCATCTTTTCATCCAAATCTTCACACTTGCC...GCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp ATGAACAGTATGAGGATGAGGCTGAACTTGTCCAGGTCGATGTTTGGGTTGGAGTTTCCACCAACTGCCTaGGTTAAAATCACGGCAGAA +
Preference number: 5 (lower is better)
Translates to: MNSMRMRLNLSRSMFGLEFPPTA*VKITAE
Trigger: TTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAA...CTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS TCA 90 bp TGCCCTTTTAAAAGCCACTCGTTGATGGATGTGACTGATAAGAGCTaGAGAAAGAGCCATATTGCTGCTGGGAAGAAGGCAAGTGTGAAG +
Preference number: 5 (lower is better)
Translates to: CPFKSHSLMDVTDKS*RKSHIAAGKKASVK
Trigger: CTTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTTCAGCTCTTATCAGTCACATCCATCAACGAGTGGCTTTTAAAAGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210630.2
CDS TCA 90 bp AGACCTTTTAAAAGCCACTCGTTGATGGATGTGACTGATAAGAGCTaGAGAAAGAGCCATATTGCTGCTGGGAAGAAGGCAAGTGTGAAG +
Preference number: 5 (lower is better)
Translates to: RPFKSHSLMDVTDKS*RKSHIAAGKKASVK
Trigger: CTTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTTCAGCTCTTATCAGTCACATCCATCAACGAGTGGCTTTTAAAAGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210515.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp GATATCAGCGAGAGATGCTCATGGCCTGCAAACACTATCTTCAGCATTGGGATTGGCAAGTGTGAAGATTaGGATGAAAAGATGCAGTCT +
Preference number: 5 (lower is better)
Translates to: DISERCSWPANTIFSIGIGKCED*DEKMQS
Trigger: AGACTGCATCTTTTCATCCAAATCTTCACACTTGCC...AATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000210515.2
ENSMUST00000210630.2
CDS-3UTR CAA 90 bp AATACTGTACTACCCTTGGCAGTAGCCAACAGAGTGTGTTTTGGAAATAACGCTGGCAAGTGTGAAGATTaGGATGAAAAGATGCAGTCT +
Preference number: 5 (lower is better)
Translates to: NTVLPLAVANRVCFGNNAGKCED*DEKMQS
Trigger: AGACTGCATCTTTTCATCCAAATCTTCACACTTGCC...AGCGTTATTTCCAAAACACACTCTGTTGGCTACTGCCAAGGGTAGTACAGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp TGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAACTCATGTTTAAAAGCCACTCGTaGATGGATGTGACTGATAAG +
Preference number: 5 (lower is better)
Translates to: CVKGEVATDMLLKLPKLMFKSHS*MDVTDK
Trigger: CTTATCAGTCACATCCATCAACGAGTGGCTTTTAAA...CATGAGTTTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS-3UTR CAA 90 bp TCATATTTGTGTAAAAGGAGAAGTAGCCACAGACATGTTACTAAAGCTCCCAAAGGCAAGTGTGAAGATTaGGATGAAAAGATGCAGTCT +
Preference number: 5 (lower is better)
Translates to: SYLCKRRSSHRHVTKAPKGKCED*DEKMQS
Trigger: AGACTGCATCTTTTCATCCAAATCTTCACACTTGCC...TTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACACAAATATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS GCA 72 bp GATTTGGATGAAAAGATGCAGTCTCAGGTGCACCAGTaGGCTGGTCAGCTCCCCCGTTCACTCCGACCGACG +
Preference number: 6 (lower is better)
Translates to: DLDEKMQSQVHQ*AGQLPRSLRPT
Trigger: CGTCGGTCGGAGTGAACGGGGGAGCTGACCAGCGCACTGGTGCACCTGAGACTGCATCTTTTCATCCAAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000210515.2
CDS CCA 72 bp GACGGCAATGTAGGACACAGTTATCTCTGGCTTCAGTaGTCCCCCGTTCACTCCGACCGACGGCTCGAGCTT +
Preference number: 6 (lower is better)
Translates to: DGNVGHSYLWLQ*SPVHSDRRLEL
Trigger: AAGCTCGAGCCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACTGTGTCCTACATTGCCGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS CCA 72 bp TATCGTTGCGACGGCAATGTAGGACACAGTTATCTCTaGCTTCAGTGGTCCCCCGTTCACTCCGACCGACGG +
Preference number: 6 (lower is better)
Translates to: YRCDGNVGHSYL*LQWSPVHSDRR
Trigger: CCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACTGTGTCCTACATTGCCGTCGCAACGATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS CAA 72 bp TTAAATATCGCAGCTGCCTCATTTCCACCAACTGCCTaGGTTAAAATCACGGCAGAAGACACAGGGGGTGGC +
Preference number: 6 (lower is better)
Translates to: LNIAAASFPPTA*VKITAEDTGGG
Trigger: GCCACCCCCTGTGTCTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCGATATTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000211286.2
CDS CCA 72 bp ATGAGCAAGGGCACGGATATCAGCGAGAGATGCTCATaGCCTGCAAACACTATCTTCAGCATTGGGATTCTT +
Preference number: 6 (lower is better)
Translates to: MSKGTDISERCS*PANTIFSIGIL
Trigger: AAGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTGCTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209490.2
CDS CAA 90 bp TTCAGCATTGGGATTCTTATGAACAGTATGAGGATGAGGCTGAACTaGTCCAGGTCGATGTTTGGGTTGGAGAAGGTGTCACAGAAGGTG +
Preference number: 6 (lower is better)
Translates to: FSIGILMNSMRMRLN*SRSMFGLEKVSQKV
Trigger: CACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAAGAATCCCAATGCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209490.2
CDS TCA 72 bp TGGTCAGCTCCTCCGTTTTTAATGACAGTCCACTGTTaGAGAATATCGTTGCGACGGCAATGTAGGACACAG +
Preference number: 6 (lower is better)
Translates to: WSAPPFLMTVHC*RISLRRQCRTQ
Trigger: CTGTGTCCTACATTGCCGTCGCAACGATATTCTTCAACAGTGGACTGTCATTAAAAACGGAGGAGCTGACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000034111.10
ENSMUST00000209490.2
ENSMUST00000209992.2
ENSMUST00000210630.2
ENSMUST00000211286.2
CDS GCA 72 bp CAAGGGCACGGATATCAGCGAGAGATGCTCATGGCCTaGAAACACTATCTTCAGCATTGGGATTCTTATGAA +
Preference number: 6 (lower is better)
Translates to: QGHGYQREMLMA*KHYLQHWDSYE
Trigger: TTCATAAGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209490.2
CDS CAA 72 bp GGGATTCTTATGAACAGTATGAGGATGAGGCTGAACTaGTCCAGGTCGATGTTTGGGTTGGAGAAGGTGTCA +
Preference number: 6 (lower is better)
Translates to: GILMNSMRMRLN*SRSMFGLEKVS
Trigger: TGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACTGTTCATAAGAATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209490.2