Pregenerated sensors for SLAMF9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026548Ensembl transcript IDs: ENSMUST00000027830.5
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTAGGGACTTGGCTTTATTTTCAGATGGTGTCTCTCAGGGAATACTaGTCTTTTAGATGTTCAACTCTGATCCCAATCCCACCAGTCCCC | + |
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Preference number: 1 (lower is better) Translates to: VGTWLYFQMVSLREY*SFRCSTLIPIPPVP Trigger: GGGGACTGGTGGGATTGGGATCAGAGTTGAACATCTAAAAGAGCAGTATTCCCTGAGAGACACCATCTGAAAATAAAGCCAAGTCCCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| 3UTR-3UTR CCA 90 bp | AGGGTGGGAAACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCATAGGGGTAGGGACTTaGCTTTATTTTCAGATGGTG | + |
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Preference number: 2 (lower is better) Translates to: RVGNRFFLYCPAQTEASSIGVGT*LYFQMV Trigger: CACCATCTGAAAATAAAGCCAAGTCCCTACCCCTAT...GCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGTTTCCCACCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| 3UTR-3UTR CCA 90 bp | AAACATTTCACTCTAATAGACTCATTTCCCCACCCAGAGGCAAGCCCGAGAAGGGGCTTTATTTTCAGATaGTGTCTCTCAGGGAATACT | + |
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Preference number: 2 (lower is better) Translates to: KHFTLIDSFPHPEASPRRGFIFR*CLSGNT Trigger: AGTATTCCCTGAGAGACACCATCTGAAAATAAAGCC...CCTTCTCGGGCTTGCCTCTGGGTGGGGAAATGAGTCTATTAGAGTGAAATGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| 3UTR-3UTR TCA 90 bp | GGGACTTGGCTTTATTTTCAGATGGTGTCTCTCAGGGAATACTGCTCTTTTAGAAATTTCCCTAGAGCCTaGAACAAAGCTCAGAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: GTWLYFQMVSLREYCSFRNFPRA*NKAQKR Trigger: CCTCTTCTGAGCTTTGTTTCAGGCTCTAGGGAAATT...TCTAAAAGAGCAGTATTCCCTGAGAGACACCATCTGAAAATAAAGCCAAGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| 3UTR GCA 72 bp | CAGGTAGGAAGGGTGGGAAACAGATTTTTCCTGTACTaGCCAGCGCAAACAGAAGCATCAAGCACGGTGCCC | + |
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Preference number: 3 (lower is better) Translates to: QVGRVGNRFFLY*PAQTEASSTVP Trigger: GGGCACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGTTTCCCACCCTTCCTACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| 3UTR GCA 72 bp | TGTACTGCCCAGCGCAAACAGAAGCATCAAGCACGGTaGCCCATAGGGGTAGGGACTTGGCTTTATTTTCAG | + |
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Preference number: 3 (lower is better) Translates to: CTAQRKQKHQAR*PIGVGTWLYFQ Trigger: CTGAAAATAAAGCCAAGTCCCTACCCCTATGGGGCACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| 3UTR TCA 72 bp | CTCTCAGGGAATACTGCTCTTTTAGATGTTCAACTCTaGTCCCAATCCCACCAGTCCCCCAGAGAATTTCCC | + |
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Preference number: 3 (lower is better) Translates to: LSGNTALLDVQL*SQSHQSPREFP Trigger: GGGAAATTCTCTGGGGGACTGGTGGGATTGGGATCAGAGTTGAACATCTAAAAGAGCAGTATTCCCTGAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CCA 90 bp | ACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCACGGTGCCCCGAGTTCACAGTGATGTaGGGCTTTGACAGCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: TDFSCTAQRKQKHQARCPEFTVM*GFDSLR Trigger: CCGGAGGCTGTCAAAGCCCCACATCACTGTGAACTC...GGGGCACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CCA 90 bp | ACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCACGGTGCCCCCTCCAGAAAACCCTTTaGCTTCCTGAAGCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TDFSCTAQRKQKHQARCPLQKTL*LPEAAA Trigger: TGCTGCTGCTTCAGGAAGCCAAAGGGTTTTCTGGAG...GGGGCACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR TCA 90 bp | CAAACATTTCACTCTAATAGACTCATTTCCCCACCCAGAGGCAAGCCCGAGAAGAACCCTTTGGCTTCCTaGAGCAGCAGCAGGAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: QTFHSNRLISPPRGKPEKNPLAS*SSSRSD Trigger: GTCACTCCTGCTGCTGCTTCAGGAAGCCAAAGGGTT...CTTCTCGGGCTTGCCTCTGGGTGGGGAAATGAGTCTATTAGAGTGAAATGTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CCA 90 bp | GGGAAACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCACGGTTATGCAGGGAGTAGCTaGACTCAGAGATGCTCACTC | + |
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Preference number: 4 (lower is better) Translates to: GKQIFPVLPSANRSIKHGYAGSS*TQRCSL Trigger: GAGTGAGCATCTCTGAGTCCAGCTACTCCCTGCATA...ACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGTTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CCA 90 bp | AGGGTGGGAAACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCAGGACAGAGCCTTCATaGGATGTGTTAGTGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: RVGNRFFLYCPAQTEASSRTEPS*DVLVLS Trigger: GGACAGCACTAACACATCCCATGAAGGCTCTGTCCT...GCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGTTTCCCACCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR GCA 90 bp | TGCCCAGCGCAAACAGAAGCATCAAGCACGGTGCCCCATAGGGGTAGGGACTTGAAGAGCCAGTCTATGTaGTTAATTTCTTCATTGGAT | + |
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Preference number: 4 (lower is better) Translates to: CPAQTEASSTVPHRGRDLKSQSM*LISSLD Trigger: ATCCAATGAAGAAATTAAGCACATAGACTGGCTCTT...CAAGTCCCTACCCCTATGGGGCACCGTGCTTGATGCTTCTGTTTGCGCTGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR GCA 90 bp | GTAGGGACTTGGCTTTATTTTCAGATGGTGTCTCTCAGGGAATACTGCTCTTTTAGCTGGACTCAGAGATaGTCACTCTGCCCCGGTATC | + |
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Preference number: 4 (lower is better) Translates to: VGTWLYFQMVSLREYCSFSWTQR*SLCPGI Trigger: GATACCGGGGCAGAGTGAGCATCTCTGAGTCCAGCT...AAAAGAGCAGTATTCCCTGAGAGACACCATCTGAAAATAAAGCCAAGTCCCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR TCA 90 bp | AAACATTTCACTCTAATAGACTCATTTCCCCACCCAGAGGCAAGCCCGAGAAGGACAGACACCTTCCTCTaGGATGTTAGAGTTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: KHFTLIDSFPHPEASPRRTDTFL*DVRVHS Trigger: ACTGTGAACTCTAACATCTCAGAGGAAGGTGTCTGT...CCTTCTCGGGCTTGCCTCTGGGTGGGGAAATGAGTCTATTAGAGTGAAATGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CCA 90 bp | TCTTTTAGATGTTCAACTCTGATCCCAATCCCACCAGTCCCCCAGAGAATTTCCTGCCTGCTCTCTCTATaGAGCACGTCAGAGATATAT | + |
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Preference number: 4 (lower is better) Translates to: SFRCSTLIPIPPVPQRISCLLSL*STSEIY Trigger: ATATATCTCTGACGTGCTCCATAGAGAGAGCAGGCA...GGAAATTCTCTGGGGGACTGGTGGGATTGGGATCAGAGTTGAACATCTAAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR TCA 90 bp | TCAGTAAAGATGCTGAGGCAGGTAGGAAGGGTGGGAAACAGATTTTTCCTGTACATGGCAATGTTGTTTTaGAAGAGCCAGTCTATGTGC | + |
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Preference number: 4 (lower is better) Translates to: SVKMLRQVGRVGNRFFLYMAMLF*KSQSMC Trigger: GCACATAGACTGGCTCTTTCAAAACAACATTGCCAT...GTACAGGAAAAATCTGTTTCCCACCCTTCCTACCTGCCTCAGCATCTTTACTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CCA 90 bp | GGGAAACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCACGGTAATTTCTTCATTGGATaGTATTTCCAGAGAGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: GKQIFPVLPSANRSIKHGNFFIG*YFQREV Trigger: AACCTCTCTCTGGAAATACCATCCAATGAAGAAATT...ACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGTTTCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 90 bp | CACCAACCACTTCCTCAGGATCCTCATCATCTCCAGAAAACCCTTTaGCTTCCTGAAGCAGCAGCAGGAGTGACCACAGAAGGGCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: HQPLPQDPHHLQKTL*LPEAAAGVTTEGPP Trigger: TGGGGGCCCTTCTGTGGTCACTCCTGCTGCTGCTTCAGGAAGCCAAAGGGTTTTCTGGAGATGATGAGGATCCTGAGGAAGTGGTTGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CAA 90 bp | ACAGATTTTTCCTGTACTGCCCAGCGCAAACAGAAGCATCAAGCACGGTGCCCCCGACGGGAACTGATGTaGCTGATGGGGTTGCTGACC | + |
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Preference number: 5 (lower is better) Translates to: TDFSCTAQRKQKHQARCPRRELM*LMGLLT Trigger: GGTCAGCAACCCCATCAGCAACATCAGTTCCCGTCG...GGGGCACCGTGCTTGATGCTTCTGTTTGCGCTGGGCAGTACAGGAAAAATCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS TCA 90 bp | GTGGGACTCAGATGTCTTCAAGTTGACTTGGGCGTTGTAAAGCCCTaGGTCTTCCCAGGTCAGATTGCTAATATGCAGGGAGTAGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: VGLRCLQVDLGVVKP*VFPGQIANMQGVAG Trigger: TCCAGCTACTCCCTGCATATTAGCAATCTGACCTGGGAAGACTCAGGGCTTTACAACGCCCAAGTCAACTTGAAGACATCTGAGTCCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 90 bp | TCGAGGATCCACTGCCATGATAACGGCTGGCTGTCCCTTTTTGCCTaGCTTCACGATGGCAATGTTGTTTTGAAAGAGCCAGTCTATGTG | + |
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Preference number: 5 (lower is better) Translates to: SRIHCHDNGWLSLFA*LHDGNVVLKEPVYV Trigger: CACATAGACTGGCTCTTTCAAAACAACATTGCCATCGTGAAGCCAGGCAAAAAGGGACAGCCAGCCGTTATCATGGCAGTGGATCCTCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CAA 90 bp | GTAGGGACTTGGCTTTATTTTCAGATGGTGTCTCTCAGGGAATACTGCTCTTTTGCTGGCTGTCCCTTTTaGCCTGGCTTCACGATGGCA | + |
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Preference number: 5 (lower is better) Translates to: VGTWLYFQMVSLREYCSFAGCPF*PGFTMA Trigger: TGCCATCGTGAAGCCAGGCAAAAAGGGACAGCCAGC...AAAAGAGCAGTATTCCCTGAGAGACACCATCTGAAAATAAAGCCAAGTCCCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CAA 90 bp | TACTGCTCTTTTAGATGTTCAACTCTGATCCCAATCCCACCAGTCCCCCAGAGATTGATGCGGTTTCTCTaGAGTTTCCTCACCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: YCSFRCSTLIPIPPVPQRLMRFL*SFLTLG Trigger: GCCAAGGGTGAGGAAACTCAAGAGAAACCGCATCAA...TCTCTGGGGGACTGGTGGGATTGGGATCAGAGTTGAACATCTAAAAGAGCAGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 90 bp | GTGATGAAAGCCAGATGTAGGTCACGTCCATGCCTGCTCTCTCTATaGAGCACGTCAGAGATATATTACAGACACCTTCCTCTGAGATGT | + |
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Preference number: 5 (lower is better) Translates to: VMKARCRSRPCLLSL*STSEIYYRHLPLRC Trigger: ACATCTCAGAGGAAGGTGTCTGTAATATATCTCTGACGTGCTCCATAGAGAGAGCAGGCATGGACGTGACCTACATCTGGCTTTCATCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CAA 90 bp | TGTTCAACTCTGATCCCAATCCCACCAGTCCCCCAGAGAATTTCCCTAGAGCCTGATGGCAATGTTGTTTaGAAAGAGCCAGTCTATGTG | + |
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Preference number: 5 (lower is better) Translates to: CSTLIPIPPVPQRISLEPDGNVV*KEPVYV Trigger: CACATAGACTGGCTCTTTCAAAACAACATTGCCATC...AGGCTCTAGGGAAATTCTCTGGGGGACTGGTGGGATTGGGATCAGAGTTGAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CAA 90 bp | GCTTCAGTAAAGATGCTGAGGCAGGTAGGAAGGGTGGGAAACAGATTTTTCCTGCCAGTAAGCAGAGCATaGAAGGCTTCTCCAGATATC | + |
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Preference number: 5 (lower is better) Translates to: ASVKMLRQVGRVGNRFFLPVSRA*KASPDI Trigger: GATATCTGGAGAAGCCTTCAATGCTCTGCTTACTGG...CAGGAAAAATCTGTTTCCCACCCTTCCTACCTGCCTCAGCATCTTTACTGAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS TCA 90 bp | GCTGGCTGTCCCTTTTTGCCTGGCTTCACGATGGCAATGTTGTTTTaGAAGAGCCAGTCTATGTGCTTAATTTCTTCATTGGATGGTATT | + |
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Preference number: 5 (lower is better) Translates to: AGCPFLPGFTMAMLF*KSQSMCLISSLDGI Trigger: AATACCATCCAATGAAGAAATTAAGCACATAGACTGGCTCTTTCAAAACAACATTGCCATCGTGAAGCCAGGCAAAAAGGGACAGCCAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS-3UTR CAA 90 bp | GGACTTGGCTTTATTTTCAGATGGTGTCTCTCAGGGAATACTGCTCTTTTAGATATTTCCAGAGAGAGGTaGATAGACTCTTGCAGGACA | + |
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Preference number: 5 (lower is better) Translates to: GLGFIFRWCLSGNTALLDISRER*IDSCRT Trigger: TGTCCTGCAAGAGTCTATCAACCTCTCTCTGGAAAT...ATCTAAAAGAGCAGTATTCCCTGAGAGACACCATCTGAAAATAAAGCCAAGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 90 bp | GTTGTTTTGAAAGAGCCAGTCTATGTGCTTAATTTCTTCATTGGATaGTATTTCCAGAGAGAGGTTGATAGACTCTTGCAGGACACCAAC | + |
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Preference number: 5 (lower is better) Translates to: VVLKEPVYVLNFFIG*YFQREVDRLLQDTN Trigger: GTTGGTGTCCTGCAAGAGTCTATCAACCTCTCTCTGGAAATACCATCCAATGAAGAAATTAAGCACATAGACTGGCTCTTTCAAAACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 72 bp | GCCCCGGTATCGAGGATCCACTGCCATGATAACGGCTaGCTGTCCCTTTTTGCCTGGCTTCACGATGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: APVSRIHCHDNG*LSLFAWLHDGN Trigger: ATTGCCATCGTGAAGCCAGGCAAAAAGGGACAGCCAGCCGTTATCATGGCAGTGGATCCTCGATACCGGGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CAA 72 bp | ACGGGAGTAGGGCCAGACTTCCCCTTCTTCCTCAGTTaGATGCGGTTTCTCTTGAGTTTCCTCACCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: TGVGPDFPFFLS*MRFLLSFLTLG Trigger: GCCAAGGGTGAGGAAACTCAAGAGAAACCGCATCAAACTGAGGAAGAAGGGGAAGTCTGGCCCTACTCCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 72 bp | CAGTTTGATGCGGTTTCTCTTGAGTTTCCTCACCCTTaGCGTCTCATAGCTTTTCTGGGCTCGGAAGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: QFDAVSLEFPHP*RLIAFLGSEEA Trigger: TGCCTCTTCCGAGCCCAGAAAAGCTATGAGACGCCAAGGGTGAGGAAACTCAAGAGAAACCGCATCAAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 72 bp | GCCAGATGTAGGTCACGTCCATGCCTGCTCTCTCTATaGAGCACGTCAGAGATATATTACAGACACCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: ARCRSRPCLLSL*STSEIYYRHLP Trigger: AGGAAGGTGTCTGTAATATATCTCTGACGTGCTCCATAGAGAGAGCAGGCATGGACGTGACCTACATCTGGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS TCA 72 bp | AGATGTCTTCAAGTTGACTTGGGCGTTGTAAAGCCCTaGGTCTTCCCAGGTCAGATTGCTAATATGCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: RCLQVDLGVVKP*VFPGQIANMQG Trigger: TCCCTGCATATTAGCAATCTGACCTGGGAAGACTCAGGGCTTTACAACGCCCAAGTCAACTTGAAGACATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CAA 90 bp | GGCTGGCTGTCCCTTTTTGCCTGGCTTCACGATGGCAATGTTGTTTaGAAAGAGCCAGTCTATGTGCTTAATTTCTTCATTGGATGGTAT | + |
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Preference number: 6 (lower is better) Translates to: GWLSLFAWLHDGNVV*KEPVYVLNFFIGWY Trigger: ATACCATCCAATGAAGAAATTAAGCACATAGACTGGCTCTTTCAAAACAACATTGCCATCGTGAAGCCAGGCAAAAAGGGACAGCCAGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS TCA 72 bp | CCCTTTTTGCCTGGCTTCACGATGGCAATGTTGTTTTaGAAGAGCCAGTCTATGTGCTTAATTTCTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: PFLPGFTMAMLF*KSQSMCLISSL Trigger: CAATGAAGAAATTAAGCACATAGACTGGCTCTTTCAAAACAACATTGCCATCGTGAAGCCAGGCAAAAAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CCA 72 bp | AAAGAGCCAGTCTATGTGCTTAATTTCTTCATTGGATaGTATTTCCAGAGAGAGGTTGATAGACTCTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: KEPVYVLNFFIG*YFQREVDRLLQ Trigger: CTGCAAGAGTCTATCAACCTCTCTCTGGAAATACCATCCAATGAAGAAATTAAGCACATAGACTGGCTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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| CDS CAA 72 bp | TCCCTTTTTGCCTGGCTTCACGATGGCAATGTTGTTTaGAAAGAGCCAGTCTATGTGCTTAATTTCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: SLFAWLHDGNVV*KEPVYVLNFFI Trigger: AATGAAGAAATTAAGCACATAGACTGGCTCTTTCAAAACAACATTGCCATCGTGAAGCCAGGCAAAAAGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027830.5 |
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