RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLAMF6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015314

Ensembl transcript IDs: ENSMUST00000171330.7, ENSMUST00000194182.2, ENSMUST00000194561.2, ENSMUST00000195656.6

Found 199 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGAGAGTGAAACTAGCAGAGTCTGGGGATGTGGCAGACCATCCTaGGCCAGGAACTCTGGCTTTCACACTGGCTGTGATGAGGAGTCT +
Preference number: 1 (lower is better)
Translates to: GESETSRVWGCGRPS*ARNSGFHTGCDEES
Trigger: AGACTCCTCATCACAGCCAGTGTGAAAGCCAGAGTTCCTGGCTCAGGATGGTCTGCCACATCCCCAGACTCTGCTAGTTTCACTCTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 90 bp GGCCTTCCCTGGCCTCTCACAGTGCCAAGCTTCAGCTACTCTTCATaGCCCCTTCATGCCTTCAAAGCCAGTACCACCTGGGTGAGTCTT +
Preference number: 1 (lower is better)
Translates to: GLPWPLTVPSFSYSS*PLHAFKASTTWVSL
Trigger: AAGACTCACCCAGGTGGTACTGGCTTTGAAGGCATGAAGGGGTCATGAAGAGTAGCTGAAGCTTGGCACTGTGAGAGGCCAGGGAAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 90 bp AGGCTTGCTTCTCACTGCAGTCAGGAAACGGGCCACAAATGCTTGTaGTTGGTTTGCCTTCTCCTCTTCATCAGTCAGGAACCGCAGTCC +
Preference number: 1 (lower is better)
Translates to: RLASHCSQETGHKCL*LVCLLLFISQEPQS
Trigger: GGACTGCGGTTCCTGACTGATGAAGAGGAGAAGGCAAACCAAGCACAAGCATTTGTGGCCCGTTTCCTGACTGCAGTGAGAAGCAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 90 bp AATAGGAGGCTTGCTTCTCACTGCAGTCAGGAAACGGGCCACAAATaGTTGTGCTTGGTTTGCCTTCTCCTCTTCATCAGTCAGGAACCG +
Preference number: 1 (lower is better)
Translates to: NRRLASHCSQETGHK*LCLVCLLLFISQEP
Trigger: CGGTTCCTGACTGATGAAGAGGAGAAGGCAAACCAAGCACAAGCATTTGTGGCCCGTTTCCTGACTGCAGTGAGAAGCAAGCCTCCTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 90 bp AGAGAGAGATCTGGAGGGGAGGGTGCTTTCACACACCATATCTGTTaGACTTGTCAAACTTGGCTGTGGGTAATGATGTACGCTGCGCTA +
Preference number: 1 (lower is better)
Translates to: RERSGGEGAFTHHIC*TCQTWLWVMMYAAL
Trigger: TAGCGCAGCGTACATCATTACCCACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGTGAAAGCACCCTCCCCTCCAGATCTCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp GAACAGTTTATCCTGGTTTACAATTTGAGGGAGGTCCTTCCATCCTaGTGGGAGGGCGTGATAGCAGGAATAGGAGGCTTGCTTCTCACT +
Preference number: 1 (lower is better)
Translates to: EQFILVYNLREVLPS*WEGVIAGIGGLLLT
Trigger: AGTGAGAAGCAAGCCTCCTATTCCTGCTATCACGCCCTCCCACCAGGATGGAAGGACCTCCCTCAAATTGTAAACCAGGATAAACTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 90 bp GGCTGTGGCTCAGTGGTAGGACACTTGCCCAGCAAGACAGAAGTCTaGTCTGCATCCTCTAAACTGTGTCAACTGCATAAATACAACTCA +
Preference number: 1 (lower is better)
Translates to: GCGSVVGHLPSKTEV*SASSKLCQLHKYNS
Trigger: TGAGTTGTATTTATGCAGTTGACACAGTTTAGAGGATGCAGATCAGACTTCTGTCTTGCTGGGCAAGTGTCCTACCACTGAGCCACAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 90 bp TTAAGAGCTGCAGAGATATCTGAAGAGTTCAACTTCAGAGGGGTCTaGAGGCTAGGAGTAAGGGACAAGAAAGCATTGGCCGTTGTCACT +
Preference number: 1 (lower is better)
Translates to: LRAAEISEEFNFRGV*RLGVRDKKALAVVT
Trigger: AGTGACAACGGCCAATGCTTTCTTGTCCCTTACTCCTAGCCTGCAGACCCCTCTGAAGTTGAACTCTTCAGATATCTCTGCAGCTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 90 bp AGAAAAATACAGATAAGGACCCAGAGAGAGATCTGGAGGGGAGGGTaGTTTCACACACCATATCTGTTGCACTTGTCAAACTTGGCTGTG +
Preference number: 1 (lower is better)
Translates to: RKIQIRTQREIWRGG*FHTPYLLHLSNLAV
Trigger: CACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGTGAAAGCACCCTCCCCTCCAGATCTCTCTCTGGGTCCTTATCTGTATTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp TGGCAGATCTGGCATTCAGCAGTAACAAACTTCATTCTCTTGAGCTaGTTCCACTCCCTGTTAGCAACTTTCCTTGGCAGATATCCCATG +
Preference number: 1 (lower is better)
Translates to: WQIWHSAVTNFILLS*FHSLLATFLGRYPM
Trigger: CATGGGATATCTGCCAAGGAAAGTTGCTAACAGGGAGTGGAACCAGCTCAAGAGAATGAAGTTTGTTACTGCTGAATGCCAGATCTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp GCTTGGTTTGCCTTCTCCTCTTCATCAGTCAGGAACCGCAGTCCTTaGAGTAATACCACACAAATTTTGAGGTTGTCCTCCACACTTCAA +
Preference number: 1 (lower is better)
Translates to: AWFAFSSSSVRNRSP*SNTTQILRLSSTLQ
Trigger: TTGAAGTGTGGAGGACAACCTCAAAATTTGTGTGGTATTACTCCAAGGACTGCGGTTCCTGACTGATGAAGAGGAGAAGGCAAACCAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 90 bp TGTTTGGGGATAAACTGTAGTCATGGATGGCTTAGATTCCTGGTGTaGGCAATGGAAGCAATGCATCGCTATCCTCCTCTTATTGGCTGT +
Preference number: 1 (lower is better)
Translates to: CLGINCSHGWLRFLV*AMEAMHRYPPLIGC
Trigger: ACAGCCAATAAGAGGAGGATAGCGATGCATTGCTTCCATTGCTCACACCAGGAATCTAAGCCATCCATGACTACAGTTTATCCCCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 90 bp TTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTGCTaGCTTCTAGAAGGAGAAGTGATTACTTGCGGAATCAATCTGTCC +
Preference number: 1 (lower is better)
Translates to: FNQNTVLSLQPITSC*LLEGEVITCGINLS
Trigger: GGACAGATTGATTCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 90 bp AGCAGCATGTGGATGAGTTACCCAAAGCAGGATTTGTCCTGGATCTaGCTGGAATGTAGTTTTGGGGTTATGTACTACAGATCTTGCTAC +
Preference number: 1 (lower is better)
Translates to: SSMWMSYPKQDLSWI*LECSFGVMYYRSCY
Trigger: GTAGCAAGATCTGTAGTACATAACCCCAAAACTACATTCCAGTCAGATCCAGGACAAATCCTGCTTTGGGTAACTCATCCACATGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 90 bp CAGAACTCTGACTGTTTAGTTGTCAGAGAGAAAGCAGCATGTGGATaGGTTACCCAAAGCAGGATTTGTCCTGGATCTGACTGGAATGTA +
Preference number: 1 (lower is better)
Translates to: QNSDCLVVREKAACG*VTQSRICPGSDWNV
Trigger: TACATTCCAGTCAGATCCAGGACAAATCCTGCTTTGGGTAACTCATCCACATGCTGCTTTCTCTCTGACAACTAAACAGTCAGAGTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 90 bp ACATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTaGTGCCTTCTAGAAGGAGAAGTGATTACTTGCGGAATCAATCTG +
Preference number: 1 (lower is better)
Translates to: TFNQNTVLSLQPITS*CLLEGEVITCGINL
Trigger: CAGATTGATTCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CCA 90 bp AGAACTCTAGCTCCTTTCATCCTTGTTGATTGCTGTTGGCAGATCTaGCATTCAGCAGTAACAAACTTCATTCTCTTGAGCTGGTTCCAC +
Preference number: 1 (lower is better)
Translates to: RTLAPFILVDCCWQI*HSAVTNFILLSWFH
Trigger: GTGGAACCAGCTCAAGAGAATGAAGTTTGTTACTGCTGAATGCCAGATCTGCCAACAGCAATCAACAAGGATGAAAGGAGCTAGAGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp GTGGTCTTCAGAACTCTAGCTCCTTTCATCCTTGTTGATTGCTGTTaGCAGATCTGGCATTCAGCAGTAACAAACTTCATTCTCTTGAGC +
Preference number: 1 (lower is better)
Translates to: VVFRTLAPFILVDCC*QIWHSAVTNFILLS
Trigger: GCTCAAGAGAATGAAGTTTGTTACTGCTGAATGCCAGATCTGCCAACAGCAATCAACAAGGATGAAAGGAGCTAGAGTTCTGAAGACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 90 bp GGAGGAACCCAACAGGCAGAAGAAGAGCTTTGGGGCAGATGTAAGTaGCTATACTATGGAGAAATTTCTTCTCTGATAGAGGAGCTAAAA +
Preference number: 1 (lower is better)
Translates to: GGTQQAEEELWGRCK*LYYGEISSLIEELK
Trigger: TTTTAGCTCCTCTATCAGAGAAGAAATTTCTCCATAGTATAGTCACTTACATCTGCCCCAAAGCTCTTCTTCTGCCTGTTGGGTTCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 90 bp GCCCCTTCAACCCTCAATCTAAAGAAATCACAGAACCACACAGCGTaGCACAATTTTATTCCACTTCTCTTAGGTCCATTGTCCCTTTCA +
Preference number: 1 (lower is better)
Translates to: APSTLNLKKSQNHTA*HNFIPLLLGPLSLS
Trigger: TGAAAGGGACAATGGACCTAAGAGAAGTGGAATAAAATTGTGTCACGCTGTGTGGTTCTGTGATTTCTTTAGATTGAGGGTTGAAGGGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp ACTTTCCTTGGCAGATATCCCATGGCTCTGATATCTCTAACATTGTaGTATCCAAGGCATCTTCTGTGTTACAGCTTCTTGTTCCAGTGT +
Preference number: 1 (lower is better)
Translates to: TFLGRYPMALISLTL*YPRHLLCYSFLFQC
Trigger: ACACTGGAACAAGAAGCTGTAACACAGAAGATGCCTTGGATACCACAATGTTAGAGATATCAGAGCCATGGGATATCTGCCAAGGAAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp ATCTCAGAGAGGAATTACTGGACCAAAGCCAGACCAAAAACCAGCTaGTCAAACTCCAAACTCTATGTTTCCATGTTTAATGCCAAGGTG +
Preference number: 1 (lower is better)
Translates to: ISERNYWTKARPKTS*SNSKLYVSMFNAKV
Trigger: CACCTTGGCATTAAACATGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGTAATTCCTCTCTGAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 90 bp CAGGATATACATTCCCAATTCCAAAACATCTCAGAGAGGAATTACTaGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTC +
Preference number: 1 (lower is better)
Translates to: QDIHSQFQNISERNY*TKARPKTSWSNSKL
Trigger: GAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGTAATTCCTCTCTGAGATGTTTTGGAATTGGGAATGTATATCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGGAAAGGCCTATCCTGTaGCCCTGGGGTGGGGCTTCC +
Preference number: 2 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLERPIL*PWGGAS
Trigger: GGAAGCCCCACCCCAGGGTCACAGGATAGGCCTTTC...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp GTGCGACTGGGGCTGTGGCTCAGTGGTAGGACACTTGCCCAGCAAGACAGAAGTGGGACAAGAAAGCATTaGCCGTTGTCACTCATTCCA +
Preference number: 2 (lower is better)
Translates to: VRLGLWLSGRTLAQQDRSGTRKH*PLSLIP
Trigger: TGGAATGAGTGACAACGGCCAATGCTTTCTTGTCCC...ACTTCTGTCTTGCTGGGCAAGTGTCCTACCACTGAGCCACAGCCCCAGTCGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp AGGAGGCTTGCTTCTCACTGCAGTCAGGAAACGGGCCACAAATGCTaGTGCTTGGTTTGCCTTCTCCTCTTCATCAGTCAGGAACCGCAG +
Preference number: 2 (lower is better)
Translates to: RRLASHCSQETGHKC*CLVCLLLFISQEPQ
Trigger: CTGCGGTTCCTGACTGATGAAGAGGAGAAGGCAAACCAAGCACAAGCATTTGTGGCCCGTTTCCTGACTGCAGTGAGAAGCAAGCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp GTGCGACTGGGGCTGTGGCTCAGTGGTAGGACACTTGCCCAGCAAGACAGAAGTTCCTTTCATCCTTGTTaGTTGCTGTTGGCAGATCTG +
Preference number: 2 (lower is better)
Translates to: VRLGLWLSGRTLAQQDRSSFHPC*LLLADL
Trigger: CAGATCTGCCAACAGCAATCAACAAGGATGAAAGGA...ACTTCTGTCTTGCTGGGCAAGTGTCCTACCACTGAGCCACAGCCCCAGTCGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGGTGCGACTGGGGCTGTaGCTCAGTGGTAGGACACTT +
Preference number: 2 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLVRLGL*LSGRTL
Trigger: AAGTGTCCTACCACTGAGCCACAGCCCCAGTCGCAC...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp TGGCCCTTAGCCCTCTGGCATCTCACCATACCACCTAGAAAGCGTTaGAACAATGCAAATGGCAGCGCTCAATCTCCAGAGATGCTGACT +
Preference number: 2 (lower is better)
Translates to: WPLALWHLTIPPRKR*NNANGSAQSPEMLT
Trigger: AGTCAGCATCTCTGGAGATTGAGCGCTGCCATTTGCATTGTTCAAACGCTTTCTAGGTGGTATGGTGAGATGCCAGAGGGCTAAGGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp GAGATCTGGAGGGGAGGGTGCTTTCACACACCATATCTGTTGCACTaGTCAAACTTGGCTGTGGGTAATGATGTACGCTGCGCTACGATG +
Preference number: 2 (lower is better)
Translates to: EIWRGGCFHTPYLLH*SNLAVGNDVRCATM
Trigger: CATCGTAGCGCAGCGTACATCATTACCCACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGTGAAAGCACCCTCCCCTCCAGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp CAGAGAGAGATCTGGAGGGGAGGGTGCTTTCACACACCATATCTGTaGCACTTGTCAAACTTGGCTGTGGGTAATGATGTACGCTGCGCT +
Preference number: 2 (lower is better)
Translates to: QREIWRGGCFHTPYL*HLSNLAVGNDVRCA
Trigger: AGCGCAGCGTACATCATTACCCACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGTGAAAGCACCCTCCCCTCCAGATCTCTCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp ACCTGCTGCTGTCTTTGTCCCGTTCAGAGGCATTTCCCCCAACCCCCAGCCAATCAGAACCACACAGCGTaGCACAATTTTATTCCACTT +
Preference number: 2 (lower is better)
Translates to: TCCCLCPVQRHFPQPPANQNHTA*HNFIPL
Trigger: AAGTGGAATAAAATTGTGTCACGCTGTGTGGTTCTG...ATTGGCTGGGGGTTGGGGGAAATGCCTCTGAACGGGACAAAGACAGCAGCAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp GAGCCAGGAACTCTGGCTTTCACACTGGCTGTGATGAGGAGTCTGCAAGGGTACTGTCCTGGATCTGACTaGAATGTAGTTTTGGGGTTA +
Preference number: 2 (lower is better)
Translates to: EPGTLAFTLAVMRSLQGYCPGSD*NVVLGL
Trigger: TAACCCCAAAACTACATTCCAGTCAGATCCAGGACA...GTACCCTTGCAGACTCCTCATCACAGCCAGTGTGAAAGCCAGAGTTCCTGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR-3UTR CCA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTGTGTCCGTGCCAACTTaGAGGCCCCTTCAACCCTCA +
Preference number: 2 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFVSVPT*RPLQPS
Trigger: TGAGGGTTGAAGGGGCCTCCAAGTTGGCACGGACAC...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp GTGCGACTGGGGCTGTGGCTCAGTGGTAGGACACTTGCCCAGCAAGACAGAAGTACATTTAATTGGGGCTaGCTTACAATTTTCAGAGGT +
Preference number: 2 (lower is better)
Translates to: VRLGLWLSGRTLAQQDRSTFNWG*LTIFRG
Trigger: ACCTCTGAAAATTGTAAGCCAGCCCCAATTAAATGT...ACTTCTGTCTTGCTGGGCAAGTGTCCTACCACTGAGCCACAGCCCCAGTCGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp CTCTTTTGTGCTGAGAATTTGGTGTCTGGGTGTGTCCGTGCCAACTaGGAGGCCCCTTCAACCCTCAATCTAAAGAAATCACAGAACCAC +
Preference number: 2 (lower is better)
Translates to: LFCAENLVSGCVRAN*EAPSTLNLKKSQNH
Trigger: GTGGTTCTGTGATTTCTTTAGATTGAGGGTTGAAGGGGCCTCCAAGTTGGCACGGACACACCCAGACACCAAATTCTCAGCACAAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp GCTTTCACACTGGCTGTGATGAGGAGTCTGCAAGGGTACAGGCAGACAATAGGAGAGCAATGGAAGCAATaGATCGCTATCCTCCTCTTA +
Preference number: 2 (lower is better)
Translates to: AFTLAVMRSLQGYRQTIGEQWKQ*IAILLL
Trigger: TAAGAGGAGGATAGCGATGCATTGCTTCCATTGCTC...TCCTATTGTCTGCCTGTACCCTTGCAGACTCCTCATCACAGCCAGTGTGAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 90 bp AGCCAATCTGCTTGTTCCTTAATATATCTCTTTTGTGCTGAGAATTaGGTGTCTGGGTGTGTCCGTGCCAACTTGGAGGCCCCTTCAACC +
Preference number: 2 (lower is better)
Translates to: SQSACSLIYLFCAEN*VSGCVRANLEAPST
Trigger: GGTTGAAGGGGCCTCCAAGTTGGCACGGACACACCCAGACACCAAATTCTCAGCACAAAAGAGATATATTAAGGAACAAGCAGATTGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp CTCTATGTTTCCATGTTTAATGCCAAGGTGGTCTTCAGAACTCTAGCTCCTTTCACCCAGAGAGAGATCTaGAGGGGAGGGTGCTTTCAC +
Preference number: 2 (lower is better)
Translates to: LYVSMFNAKVVFRTLAPFTQREI*RGGCFH
Trigger: GTGAAAGCACCCTCCCCTCCAGATCTCTCTCTGGGT...GAAAGGAGCTAGAGTTCTGAAGACCACCTTGGCATTAAACATGGAAACATAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp TCAGAGAGGAATTACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCCTATACTTTCATCAATaGCCTTCCCTGGCCTCTCAC +
Preference number: 2 (lower is better)
Translates to: SERNYWTKARPKTSWSNSLYFHQ*PSLASH
Trigger: GTGAGAGGCCAGGGAAGGCCATTGATGAAAGTATAG...GGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGTAATTCCTCTCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp ATTCATATTAGAGAAAGCTCCTTTCAGCCCATTCCACTTTTTACCTaGAAACCCAAGATGAAAGGCCTATCCTGTGACCCTGGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: IHIRESSFQPIPLFT*KPKMKGLSCDPGVG
Trigger: CCCCACCCCAGGGTCACAGGATAGGCCTTTCATCTTGGGTTTCAAGGTAAAAAGTGGAATGGGCTGAAAGGAGCTTTCTCTAATATGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp TTCTGCAAAAACACCTGCTGCTGTCTTTGTCCCGTTCAGAGGCATTTCCCCCAAAAAGCGTTTGAACAATaGAAATGGCAGCGCTCAATC +
Preference number: 2 (lower is better)
Translates to: FCKNTCCCLCPVQRHFPQKAFEQ*KWQRSI
Trigger: GATTGAGCGCTGCCATTTGCATTGTTCAAACGCTTT...TTGGGGGAAATGCCTCTGAACGGGACAAAGACAGCAGCAGGTGTTTTTGCAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGAAAACCCACCACTTCTaGAAAAACACCTGCTGCTGT +
Preference number: 2 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLKTHHF*KNTCCC
Trigger: ACAGCAGCAGGTGTTTTTGCAGAAGTGGTGGGTTTT...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp CTCTATGTTTCCATGTTTAATGCCAAGGTGGTCTTCAGAACTCTAGCTCCTTTCCCTGGCCTCTCACAGTaGCAAGCTTCAGCTACTCTT +
Preference number: 2 (lower is better)
Translates to: LYVSMFNAKVVFRTLAPFPGLSQ*QASATL
Trigger: AAGAGTAGCTGAAGCTTGGCACTGTGAGAGGCCAGG...GAAAGGAGCTAGAGTTCTGAAGACCACCTTGGCATTAAACATGGAAACATAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp GTTACCCAAAGCAGGATTTGTCCTGGATCTGACTGGAATGTAGTTTaGGGGTTATGTACTACAGATCTTGCTACCCCTGAAGAGTCTGAC +
Preference number: 2 (lower is better)
Translates to: VTQSRICPGSDWNVV*GLCTTDLATPEESD
Trigger: GTCAGACTCTTCAGGGGTAGCAAGATCTGTAGTACATAACCCCAAAACTACATTCCAGTCAGATCCAGGACAAATCCTGCTTTGGGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 90 bp AGGGTACAGGCAGACAATAGGAAGAGTGGGACTATACTAAGGACATaGTGCTGGTTGTCTTTTAGACCATGGGTAATGCAGAGACAAGAG +
Preference number: 2 (lower is better)
Translates to: RVQADNRKSGTILRT*CWLSFRPWVMQRQE
Trigger: CTCTTGTCTCTGCATTACCCATGGTCTAAAAGACAACCAGCACAATGTCCTTAGTATAGTCCCACTCTTCCTATTGTCTGCCTGTACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 90 bp ATAAGAAGGGATTTAAGGAAAGAACAGTTTATCCTGGTTTACAATTaGAGGGAGGTCCTTCCATCCTGGTGGGAGGGCGTGATAGCAGGA +
Preference number: 2 (lower is better)
Translates to: IRRDLRKEQFILVYN*REVLPSWWEGVIAG
Trigger: TCCTGCTATCACGCCCTCCCACCAGGATGGAAGGACCTCCCTCAAATTGTAAACCAGGATAAACTGTTCTTTCCTTAAATCCCTTCTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTTCCCGGAATGGGTTTTaGCACAGGCATTTGTCTTTG +
Preference number: 2 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFSRNGF*HRHLSL
Trigger: CAAAGACAAATGCCTGTGTCAAAACCCATTCCGGGA...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGATGGAACTGTCACAGTaGAATCCACTGATATGCACA +
Preference number: 2 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLMELSQ*NPLICT
Trigger: TGTGCATATCAGTGGATTTCACTGTGACAGTTCCAT...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp GGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTCCATTCTGCAAAAACACCTaGTGCTGTCTTTGTCCCGTT +
Preference number: 2 (lower is better)
Translates to: GPKPDQKPAGQTPNSMFPFCKNT*CCLCPV
Trigger: AACGGGACAAAGACAGCAGCAGGTGTTTTTGCAGAA...TGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGTTCATCCTTGTTGATTaGTGTTGGCAGATCTGGCAT +
Preference number: 2 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLFILVD*CWQIWH
Trigger: ATGCCAGATCTGCCAACAGCAATCAACAAGGATGAA...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp GCACACAGGAGGCAGAGACAGGCGTATTCTGTGAGTTTGAGACTAACCTGGTCTCTAGGGAAACAAGTCTaGAATTGTAAAGGAAGACTA +
Preference number: 2 (lower is better)
Translates to: AHRRQRQAYSVSLRLTWSLGKQV*NCKGRL
Trigger: TAGTCTTCCTTTACAATTCCAGACTTGTTTCCCTAG...AGACCAGGTTAGTCTCAAACTCACAGAATACGCCTGTCTCTGCCTCCTGTGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp GGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTCCAGTTAGCAACTTTCCTTaGCAGATATCCCATGGCTCT +
Preference number: 2 (lower is better)
Translates to: GPKPDQKPAGQTPNSMFPVSNFP*QISHGS
Trigger: AGAGCCATGGGATATCTGCCAAGGAAAGTTGCTAAC...TGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp ACAGCCAATCACATCCTGCTGCCTTCTAGAAGGAGAAGTGATTACTaGCGGAATCAATCTGTCCATCAGAACTCTGACTGTTTAGTTGTC +
Preference number: 2 (lower is better)
Translates to: TANHILLPSRRRSDY*RNQSVHQNSDCLVV
Trigger: GACAACTAAACAGTCAGAGTTCTGATGGACAGATTGATTCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGTGATTGGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 90 bp TCTCTAACATTGTGGTATCCAAGGCATCTTCTGTGTTACAGCTTCTaGTTCCAGTGTCTGAGATCTACACATGATTTTCTGGGCTCCTCC +
Preference number: 2 (lower is better)
Translates to: SLTLWYPRHLLCYSF*FQCLRSTHDFLGSS
Trigger: GGAGGAGCCCAGAAAATCATGTGTAGATCTCAGACACTGGAACAAGAAGCTGTAACACAGAAGATGCCTTGGATACCACAATGTTAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGCACAGTGAAATCCACTaGTATGCACAAATCCTTTTG +
Preference number: 2 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLHSEIH*YAQILL
Trigger: CAAAAGGATTTGTGCATATCAGTGGATTTCACTGTG...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp GCCAGATACTACACATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACAAGAGAAAGCAGCATGTaGATGAGTTACCCAAAGCAG +
Preference number: 2 (lower is better)
Translates to: ARYYTFNQNTVLSLQPITRESSM*MSYPKQ
Trigger: CTGCTTTGGGTAACTCATCCACATGCTGCTTTCTCT...TGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATGTGTAGTATCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR-3UTR CCA 90 bp GACAAGAAAGCATTGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTTAGAACATTTGTGCTGAGAATTTaGTGTCTGGGTGTGTCCGTG +
Preference number: 2 (lower is better)
Translates to: DKKALAVVTHSSDLLVRTFVLRI*CLGVSV
Trigger: CACGGACACACCCAGACACCAAATTCTCAGCACAAA...TGTTCTAACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTTCTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTATTCACCTTGTGGTTTaGATTGTTGTAGGATCCCGG +
Preference number: 2 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFIHLVV*IVVGSR
Trigger: CCGGGATCCTACAACAATCCAAACCACAAGGTGAAT...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTACCTGGTCTACATTGTaGGTTCTAAAAATCCAGAGC +
Preference number: 2 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFTWSTL*VLKIQS
Trigger: GCTCTGGATTTTTAGAACTCACAATGTAGACCAGGT...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 90 bp TGGTCTATGTTCTCAGACTGCAGCAGCGACAAAGGCATGTTTTCCTaGAACTTAGAGGAAAATGGGTGCATCAGTTGCTTATCTTATTAC +
Preference number: 2 (lower is better)
Translates to: WSMFSDCSSDKGMFS*NLEENGCISCLSYY
Trigger: GTAATAAGATAAGCAACTGATGCACCCATTTTCCTCTAAGTTCAAGGAAAACATGCCTTTGTCGCTGCTGCAGTCTGAGAACATAGACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp GACAAGAAAGCATTGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTTAGAACAATATCTCTTTTGTGCTaGGAATTTGGTGTCTGGGTG +
Preference number: 2 (lower is better)
Translates to: DKKALAVVTHSSDLLVRTISLLC*EFGVWV
Trigger: CACCCAGACACCAAATTCTCAGCACAAAAGAGATAT...TGTTCTAACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTTCTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp ATGGTGATTTTAGATTTCATCAAGTTGACAATCAAGATTAACCATCTCAGTGGGCCAGTACCACCTGGGTaGGTCTTACACATCACCAGT +
Preference number: 2 (lower is better)
Translates to: MVILDFIKLTIKINHLSGPVPPG*VLHITS
Trigger: ACTGGTGATGTGTAAGACTCACCCAGGTGGTACTGG...CCCACTGAGATGGTTAATCTTGATTGTCAACTTGATGAAATCTAAAATCACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR GCA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTAACCCCCAGCCAATCTaGTTGTTCCTTAATATATCT +
Preference number: 2 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFNPQPI*LFLNIS
Trigger: AGATATATTAAGGAACAAGCAGATTGGCTGGGGGTT...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR TCA 90 bp ATGGTGATTTTAGATTTCATCAAGTTGACAATCAAGATTAACCATCTCAGTGGGGTGTTAGTTAGAACATaGCAATGGCGCACTCTCCTC +
Preference number: 2 (lower is better)
Translates to: MVILDFIKLTIKINHLSGVLVRT*QWRTLL
Trigger: GAGGAGAGTGCGCCATTGTCATGTTCTAACTAACAC...CCCACTGAGATGGTTAATCTTGATTGTCAACTTGATGAAATCTAAAATCACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CCA 90 bp ATGGTGATTTTAGATTTCATCAAGTTGACAATCAAGATTAACCATCTCAGTGGGTCGCTAACACATTCATaGAACTGTCACAGTGAAATC +
Preference number: 2 (lower is better)
Translates to: MVILDFIKLTIKINHLSGSLTHS*NCHSEI
Trigger: GATTTCACTGTGACAGTTCCATGAATGTGTTAGCGA...CCCACTGAGATGGTTAATCTTGATTGTCAACTTGATGAAATCTAAAATCACCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp GAAACTAGCAGAGTCTGGGGATGTGGCAGACCATCCTaGGCCAGGAACTCTGGCTTTCACACTGGCTGTGAT +
Preference number: 3 (lower is better)
Translates to: ETSRVWGCGRPS*ARNSGFHTGCD
Trigger: ATCACAGCCAGTGTGAAAGCCAGAGTTCCTGGCTCAGGATGGTCTGCCACATCCCCAGACTCTGCTAGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 72 bp TGGCCTCTCACAGTGCCAAGCTTCAGCTACTCTTCATaGCCCCTTCATGCCTTCAAAGCCAGTACCACCTGG +
Preference number: 3 (lower is better)
Translates to: WPLTVPSFSYSS*PLHAFKASTTW
Trigger: CCAGGTGGTACTGGCTTTGAAGGCATGAAGGGGTCATGAAGAGTAGCTGAAGCTTGGCACTGTGAGAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 72 bp GGGCGTGATAGCAGGAATAGGAGGCTTGCTTCTCACTaGAGTCAGGAAACGGGCCACAAATGCTTGTGCTTG +
Preference number: 3 (lower is better)
Translates to: GRDSRNRRLASH*SQETGHKCLCL
Trigger: CAAGCACAAGCATTTGTGGCCCGTTTCCTGACTGCAGTGAGAAGCAAGCCTCCTATTCCTGCTATCACGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp TCTCAGTGGGAGAAACAGGTAAGACACTGTGTAGAATaGACAGTGCGACTGGGGCTGTGGCTCAGTGGTAGG +
Preference number: 3 (lower is better)
Translates to: SQWEKQVRHCVE*TVRLGLWLSGR
Trigger: CCTACCACTGAGCCACAGCCCCAGTCGCACTGTTCATTCTACACAGTGTCTTACCTGTTTCTCCCACTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 72 bp CACTTGTCAAACTTGGCTGTGGGTAATGATGTACGCTaGGCTACGATGTTCCCAAGGGCAGGCTGGTGGAAA +
Preference number: 3 (lower is better)
Translates to: HLSNLAVGNDVR*ATMFPRAGWWK
Trigger: TTTCCACCAGCCTGCCCTTGGGAACATCGTAGCGCAGCGTACATCATTACCCACAGCCAAGTTTGACAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 72 bp CTACACATGATTTTCTGGGCTCCTCCAAAGGACGTGTaGCACTTCTCCAGCTCTGCCCTCTGTAGCACTCTA +
Preference number: 3 (lower is better)
Translates to: LHMIFWAPPKDV*HFSSSALCSTL
Trigger: TAGAGTGCTACAGAGGGCAGAGCTGGAGAAGTGGCACACGTCCTTTGGAGGAGCCCAGAAAATCATGTGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp GATGTACGCTGCGCTACGATGTTCCCAAGGGCAGGCTaGTGGAAATGCCTGATCGCTAACACATTCATGGAA +
Preference number: 3 (lower is better)
Translates to: DVRCATMFPRAG*WKCLIANTFME
Trigger: TTCCATGAATGTGTTAGCGATCAGGCATTTCCACCAGCCTGCCCTTGGGAACATCGTAGCGCAGCGTACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp ATCCTGGTTTACAATTTGAGGGAGGTCCTTCCATCCTaGTGGGAGGGCGTGATAGCAGGAATAGGAGGCTTG +
Preference number: 3 (lower is better)
Translates to: ILVYNLREVLPS*WEGVIAGIGGL
Trigger: CAAGCCTCCTATTCCTGCTATCACGCCCTCCCACCAGGATGGAAGGACCTCCCTCAAATTGTAAACCAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp GCATTACCCCTTCAGTACTGGGCCATCAACTGCAACTaGGGCTATACTTTCATCAATGGCCTTCCCTGGCCT +
Preference number: 3 (lower is better)
Translates to: ALPLQYWAINCN*GYTFINGLPWP
Trigger: AGGCCAGGGAAGGCCATTGATGAAAGTATAGCCTCAGTTGCAGTTGATGGCCCAGTACTGAAGGGGTAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp AGTGATAACCCTGGGCATCCGGATCCCATTGCCAGTTaGAAAGCACGCTTCTTTTCTGTTCTCTTCCAAGGG +
Preference number: 3 (lower is better)
Translates to: SDNPGHPDPIAS*KARFFSVLFQG
Trigger: CCCTTGGAAGAGAACAGAAAAGAAGCGTGCTTTCCAACTGGCAATGGGATCCGGATGCCCAGGGTTATCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CCA 72 bp GACTCCACTCCACTGCTGCTGATCATTCCACGGTTCTaGCATCTCCAATTCTCTGGAGTCTTCTACTGCAAC +
Preference number: 3 (lower is better)
Translates to: DSTPLLLIIPRF*HLQFSGVFYCN
Trigger: GTTGCAGTAGAAGACTCCAGAGAATTGGAGATGCCAGAACCGTGGAATGATCAGCAGCAGTGGAGTGGAGTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp CCCTCTGGCATCTCACCATACCACCTAGAAAGCGTTTaGACAATGCAAATGGCAGCGCTCAATCTCCAGAGA +
Preference number: 3 (lower is better)
Translates to: PSGISPYHLESV*TMQMAALNLQR
Trigger: TCTCTGGAGATTGAGCGCTGCCATTTGCATTGTTCAAACGCTTTCTAGGTGGTATGGTGAGATGCCAGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp CTACGATGTTCCCAAGGGCAGGCTGGTGGAAATGCCTaGTCGCTAACACATTCATGGAACTGTCACAGTGAA +
Preference number: 3 (lower is better)
Translates to: LRCSQGQAGGNA*SLTHSWNCHSE
Trigger: TTCACTGTGACAGTTCCATGAATGTGTTAGCGATCAGGCATTTCCACCAGCCTGCCCTTGGGAACATCGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 72 bp ATACTTTCATCAATGGCCTTCCCTGGCCTCTCACAGTaGCAAGCTTCAGCTACTCTTCATGACCCCTTCATG +
Preference number: 3 (lower is better)
Translates to: ILSSMAFPGLSQ*QASATLHDPFM
Trigger: CATGAAGGGGTCATGAAGAGTAGCTGAAGCTTGGCACTGTGAGAGGCCAGGGAAGGCCATTGATGAAAGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 72 bp TCTCACTGCAGTCAGGAAACGGGCCACAAATGCTTGTaGTTGGTTTGCCTTCTCCTCTTCATCAGTCAGGAA +
Preference number: 3 (lower is better)
Translates to: SHCSQETGHKCL*LVCLLLFISQE
Trigger: TTCCTGACTGATGAAGAGGAGAAGGCAAACCAAGCACAAGCATTTGTGGCCCGTTTCCTGACTGCAGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp TCTGGGGATGTGGCAGACCATCCTGAGCCAGGAACTCTGGCTTTCACACTGGCTATGATGGTCTACAAGTaGAAAAGAGAGAGATCTGTT +
Preference number: 3 (lower is better)
Translates to: SGDVADHPEPGTLAFTLAMMVYK*KRERSV
Trigger: AACAGATCTCTCTCTTTTCAACTTGTAGACCATCAT...AGCCAGTGTGAAAGCCAGAGTTCCTGGCTCAGGATGGTCTGCCACATCCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp AACACCGTGCTCTCTCTACAGCCAATCACATCCTGCTaGCTTCTAGAAGGAGAAGTGATTACTTGCGGAATC +
Preference number: 3 (lower is better)
Translates to: NTVLSLQPITSC*LLEGEVITCGI
Trigger: GATTCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp CAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTaGTGCCTTCTAGAAGGAGAAGTGATTACTTGCGGA +
Preference number: 3 (lower is better)
Translates to: QNTVLSLQPITS*CLLEGEVITCG
Trigger: TCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp TCTGGAGGGGAGGGTGCTTTCACACACCATATCTGTTaGACTTGTCAAACTTGGCTGTGGGTAATGATGTAC +
Preference number: 3 (lower is better)
Translates to: SGGEGAFTHHIC*TCQTWLWVMMY
Trigger: GTACATCATTACCCACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGTGAAAGCACCCTCCCCTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp TACATCTTGATTCAAAGGCAACCAGCCAGAAGAGGCTaGTGTTCTCAGGCATCTAGGAGGAAGCTCTTTTCC +
Preference number: 3 (lower is better)
Translates to: YILIQRQPARRG*CSQASRRKLFS
Trigger: GGAAAAGAGCTTCCTCCTAGATGCCTGAGAACACCAGCCTCTTCTGGCTGGTTGCCTTTGAATCAAGATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp GCCTTCTCCTCTTCATCAGTCAGGAACCGCAGTCCTTaGAGTAATACCACACAAATTTTGAGGTTGTCCTCC +
Preference number: 3 (lower is better)
Translates to: AFSSSSVRNRSP*SNTTQILRLSS
Trigger: GGAGGACAACCTCAAAATTTGTGTGGTATTACTCCAAGGACTGCGGTTCCTGACTGATGAAGAGGAGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGACAAACTTCATTCTCTaGAGCTGGTTCCACTCCCTG +
Preference number: 3 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLTNFIL*SWFHSL
Trigger: CAGGGAGTGGAACCAGCTCAAGAGAATGAAGTTTGT...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp CCACACTTCAATGATCCCCATCTAGATGAGCTCACAGTCATGCCCAGAGATTTGAATTCACCTTGTGGTTaGGATTGTTGTAGGATCCCG +
Preference number: 3 (lower is better)
Translates to: PHFNDPHLDELTVMPRDLNSPCG*DCCRIP
Trigger: CGGGATCCTACAACAATCCAAACCACAAGGTGAATT...CAAATCTCTGGGCATGACTGTGAGCTCATCTAGATGGGGATCATTGAAGTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp GGTGGTCTTCAGAACTCTAGCTCCTTTCATCCTTGTTaGTTGCTGTTGGCAGATCTGGCATTCAGCAGTAAC +
Preference number: 3 (lower is better)
Translates to: GGLQNSSSFHPC*LLLADLAFSSN
Trigger: GTTACTGCTGAATGCCAGATCTGCCAACAGCAATCAACAAGGATGAAAGGAGCTAGAGTTCTGAAGACCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp ACACACCATATCTGTTGCACTTGTCAAACTTGGCTGTaGGTAATGATGTACGCTGCGCTACGATGTTCCCAA +
Preference number: 3 (lower is better)
Translates to: THHICCTCQTWL*VMMYAALRCSQ
Trigger: TTGGGAACATCGTAGCGCAGCGTACATCATTACCCACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp CATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTGCTGCCTTCAGGAGAAGTGATTACTaGCGGAATCAATCTGTCCAT +
Preference number: 3 (lower is better)
Translates to: HLTKTPCSLYSQSHPAAFRRSDY*RNQSVH
Trigger: ATGGACAGATTGATTCCGCAAGTAATCACTTCTCCT...GAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR-3UTR CAA 90 bp TCAGAGAGGAATTACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCCCCCAGCCAATCTGCTaGTTCCTTAATATATCTCTT +
Preference number: 3 (lower is better)
Translates to: SERNYWTKARPKTSWSNSPQPIC*FLNISL
Trigger: AAGAGATATATTAAGGAACAAGCAGATTGGCTGGGG...GGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGTAATTCCTCTCTGA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp GGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTCCACAAGGCTCAGCTTTTTaGCATTACCCCTTCAGTACT +
Preference number: 3 (lower is better)
Translates to: GPKPDQKPAGQTPNSMFPQGSAF*HYPFST
Trigger: AGTACTGAAGGGGTAATGCAAAAAAGCTGAGCCTTG...TGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp GACTGTTTAGTTGTCAGAGAGAAAGCAGCATGTGGATaGGTTACCCAAAGCAGGATTTGTCCTGGATCTGAC +
Preference number: 3 (lower is better)
Translates to: DCLVVREKAACG*VTQSRICPGSD
Trigger: GTCAGATCCAGGACAAATCCTGCTTTGGGTAACTCATCCACATGCTGCTTTCTCTCTGACAACTAAACAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp GATGGCTTAGATTCCTGGTGTGAGCAATGGAAGCAATaGATCGCTATCCTCCTCTTATTGGCTGTGAGATTA +
Preference number: 3 (lower is better)
Translates to: DGLDSWCEQWKQ*IAILLLLAVRL
Trigger: TAATCTCACAGCCAATAAGAGGAGGATAGCGATGCATTGCTTCCATTGCTCACACCAGGAATCTAAGCCATC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CCA 72 bp CTTGAGCTGGTTCCACTCCCTGTTAGCAACTTTCCTTaGCAGATATCCCATGGCTCTGATATCTCTAACATT +
Preference number: 3 (lower is better)
Translates to: LELVPLPVSNFP*QISHGSDISNI
Trigger: AATGTTAGAGATATCAGAGCCATGGGATATCTGCCAAGGAAAGTTGCTAACAGGGAGTGGAACCAGCTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp TGGCATTCAGCAGTAACAAACTTCATTCTCTTGAGCTaGTTCCACTCCCTGTTAGCAACTTTCCTTGGCAGA +
Preference number: 3 (lower is better)
Translates to: WHSAVTNFILLS*FHSLLATFLGR
Trigger: TCTGCCAAGGAAAGTTGCTAACAGGGAGTGGAACCAGCTCAAGAGAATGAAGTTTGTTACTGCTGAATGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp ATAAACTGTAGTCATGGATGGCTTAGATTCCTGGTGTaGGCAATGGAAGCAATGCATCGCTATCCTCCTCTT +
Preference number: 3 (lower is better)
Translates to: INCSHGWLRFLV*AMEAMHRYPPL
Trigger: AAGAGGAGGATAGCGATGCATTGCTTCCATTGCTCACACCAGGAATCTAAGCCATCCATGACTACAGTTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp ACATCCTGCTGCCTTCTAGAAGGAGAAGTGATTACTTaGGGAATCAATCTGTCCATCAGAACTCTGACTGTT +
Preference number: 3 (lower is better)
Translates to: TSCCLLEGEVIT*GINLSIRTLTV
Trigger: AACAGTCAGAGTTCTGATGGACAGATTGATTCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp GTCTTCAGAACTCTAGCTCCTTTCATCCTTGTTGATTaGTGTTGGCAGATCTGGCATTCAGCAGTAACAAAC +
Preference number: 3 (lower is better)
Translates to: VFRTLAPFILVD*CWQIWHSAVTN
Trigger: GTTTGTTACTGCTGAATGCCAGATCTGCCAACAGCAATCAACAAGGATGAAAGGAGCTAGAGTTCTGAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp GGCAGATATCCCATGGCTCTGATATCTCTAACATTGTaGTATCCAAGGCATCTTCTGTGTTACAGCTTCTTG +
Preference number: 3 (lower is better)
Translates to: GRYPMALISLTL*YPRHLLCYSFL
Trigger: CAAGAAGCTGTAACACAGAAGATGCCTTGGATACCACAATGTTAGAGATATCAGAGCCATGGGATATCTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTGCTGTGGTGACAGCATaGTTTAATTTCCTCAAGTCA +
Preference number: 3 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFAVVTA*FNFLKS
Trigger: TGACTTGAGGAAATTAAACAATGCTGTCACCACAGC...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp AAAGCATTGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTTAGAACATGTCAATTTTGTGCTGAGAATTaGGTGTCTGGGTGTGTCCGT +
Preference number: 3 (lower is better)
Translates to: KALAVVTHSSDLLVRTCQFCAEN*VSGCVR
Trigger: ACGGACACACCCAGACACCAAATTCTCAGCACAAAA...TTGACATGTTCTAACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp TGGATGAGTTACCCAAAGCAGGATTTGTCCTGGATCTaGCTGGAATGTAGTTTTGGGGTTATGTACTACAGA +
Preference number: 3 (lower is better)
Translates to: WMSYPKQDLSWI*LECSFGVMYYR
Trigger: TCTGTAGTACATAACCCCAAAACTACATTCCAGTCAGATCCAGGACAAATCCTGCTTTGGGTAACTCATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR GCA 72 bp GACAATAGGAAGAGTGGGACTATACTAAGGACATTGTaGTGGTTGTCTTTTAGACCATGGGTAATGCAGAGA +
Preference number: 3 (lower is better)
Translates to: DNRKSGTILRTL*WLSFRPWVMQR
Trigger: TCTCTGCATTACCCATGGTCTAAAAGACAACCAGCACAATGTCCTTAGTATAGTCCCACTCTTCCTATTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 72 bp CAACAGGCAGAAGAAGAGCTTTGGGGCAGATGTAAGTaGCTATACTATGGAGAAATTTCTTCTCTGATAGAG +
Preference number: 3 (lower is better)
Translates to: QQAEEELWGRCK*LYYGEISSLIE
Trigger: CTCTATCAGAGAAGAAATTTCTCCATAGTATAGTCACTTACATCTGCCCCAAAGCTCTTCTTCTGCCTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 72 bp TATTCTGTGAGTTTGAGACTAACCTGGTCTACATTGTaGGTTCTAAAAATCCAGAGCTACGTAGTGAGACCC +
Preference number: 3 (lower is better)
Translates to: YSVSLRLTWSTL*VLKIQSYVVRP
Trigger: GGGTCTCACTACGTAGCTCTGGATTTTTAGAACTCACAATGTAGACCAGGTTAGTCTCAAACTCACAGAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR GCA 72 bp CAGAAGTCTGATCTGCATCCTCTAAACTGTGTCAACTaGATAAATACAACTCACATCCTAAGAGGGGAAAAG +
Preference number: 3 (lower is better)
Translates to: QKSDLHPLNCVN*INTTHILRGEK
Trigger: CTTTTCCCCTCTTAGGATGTGAGTTGTATTTATGCAGTTGACACAGTTTAGAGGATGCAGATCAGACTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp AATAGGAAGAGTGGGACTATACTAAGGACATTGTGCTaGTTGTCTTTTAGACCATGGGTAATGCAGAGACAA +
Preference number: 3 (lower is better)
Translates to: NRKSGTILRTLC*LSFRPWVMQRQ
Trigger: TTGTCTCTGCATTACCCATGGTCTAAAAGACAACCAGCACAATGTCCTTAGTATAGTCCCACTCTTCCTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CCA 72 bp AGAACTCTAGCTCCTTTCATCCTTGTTGATTGCTGTTaGCAGATCTGGCATTCAGCAGTAACAAACTTCATT +
Preference number: 3 (lower is better)
Translates to: RTLAPFILVDCC*QIWHSAVTNFI
Trigger: AATGAAGTTTGTTACTGCTGAATGCCAGATCTGCCAACAGCAATCAACAAGGATGAAAGGAGCTAGAGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR-3UTR CAA 90 bp ACATTGTGCTGGTTGTCTTTTAGACCATGGGTAATGCAGAGACAAGAGCAAAATGACTGGAATGTAGTTTaGGGGTTATGTACTACAGAT +
Preference number: 3 (lower is better)
Translates to: TLCWLSFRPWVMQRQEQNDWNVV*GLCTTD
Trigger: ATCTGTAGTACATAACCCCAAAACTACATTCCAGTC...ATTTTGCTCTTGTCTCTGCATTACCCATGGTCTAAAAGACAACCAGCACAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR TCA 72 bp ACCCTCAATCTAAAGAAATCACAGAACCACACAGCGTaGCACAATTTTATTCCACTTCTCTTAGGTCCATTG +
Preference number: 3 (lower is better)
Translates to: TLNLKKSQNHTA*HNFIPLLLGPL
Trigger: CAATGGACCTAAGAGAAGTGGAATAAAATTGTGTCACGCTGTGTGGTTCTGTGATTTCTTTAGATTGAGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp AGGAATTACTGGACCAAAGCCAGACCAAAAACCAGCTaGTCAAACTCCAAACTCTATGTTTCCATGTTTAAT +
Preference number: 3 (lower is better)
Translates to: RNYWTKARPKTS*SNSKLYVSMFN
Trigger: ATTAAACATGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGTAATTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp CTAACACATTCATGGAACTGTCACAGTGAAATCCACTaGTATGCACAAATCCTTTTGTCTATGTCCTATCAA +
Preference number: 3 (lower is better)
Translates to: LTHSWNCHSEIH*YAQILLSMSYQ
Trigger: TTGATAGGACATAGACAAAAGGATTTGTGCATATCAGTGGATTTCACTGTGACAGTTCCATGAATGTGTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR TCA 72 bp TATTGTGTACTAGTTGTCTTAGTGTTTCTATTGCTATaGAGAGACACTATGACTAAGGCAACTCTTACAAAG +
Preference number: 3 (lower is better)
Translates to: YCVLVVLVFLLL*RDTMTKATLTK
Trigger: CTTTGTAAGAGTTGCCTTAGTCATAGTGTCTCTTCATAGCAATAGAAACACTAAGACAACTAGTACACAATA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CCA 72 bp AGGCAACTCTTACAAAGACAAACATTTAATTGGGGCTaGCTTACAATTTTCAGAGGTTTAGTCCATTATTAT +
Preference number: 3 (lower is better)
Translates to: RQLLQRQTFNWG*LTIFRGLVHYY
Trigger: ATAATAATGGACTAAACCTCTGAAAATTGTAAGCCAGCCCCAATTAAATGTTTGTCTTTGTAAGAGTTGCCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR GCA 90 bp ACCTGCTGCTGTCTTTGTCCCGTTCAGAGGCATTTCCCCCAACCCCCAGCCAATGCTGGGGGTCTGAGCTaGTCTGTGAAACTTCACTCC +
Preference number: 4 (lower is better)
Translates to: TCCCLCPVQRHFPQPPANAGGLS*SVKLHS
Trigger: GGAGTGAAGTTTCACAGAGCAGCTCAGACCCCCAGC...ATTGGCTGGGGGTTGGGGGAAATGCCTCTGAACGGGACAAAGACAGCAGCAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR GCA 90 bp GAGCCAGGAACTCTGGCTTTCACACTGGCTGTGATGAGGAGTCTGCAAGGGTACAGCCTGGGCCATCTGTaGTCTGGGAGGACTCTGGAT +
Preference number: 4 (lower is better)
Translates to: EPGTLAFTLAVMRSLQGYSLGHL*SGRTLD
Trigger: ATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCT...GTACCCTTGCAGACTCCTCATCACAGCCAGTGTGAAAGCCAGAGTTCCTGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp GGAAGGATCCAGGCTGAAGTGATAACCCTGGGCATCCGGATCCCATTGCCAGTTGGGCCATCTGTGCTCTaGGAGGACTCTGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: GRIQAEVITLGIRIPLPVGPSVL*EDSGCW
Trigger: CCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCC...AACTGGCAATGGGATCCGGATGCCCAGGGTTATCACTTCAGCCTGGATCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp GCTTTCACACTGGCTGTGATGAGGAGTCTGCAAGGGTACAGGCAGACAATAGGACAGGCCAGGTGTATCTaGCAGGTCCCATTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: AFTLAVMRSLQGYRQTIGQARCI*QVPFSS
Trigger: GCTAGAGAATGGGACCTGCCAGATACACCTGGCCTG...TCCTATTGTCTGCCTGTACCCTTGCAGACTCCTCATCACAGCCAGTGTGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR TCA 90 bp GGAAGGATCCAGGCTGAAGTGATAACCCTGGGCATCCGGATCCCATTGCCAGTTGGTCGAAACAGAGACTaGCAAATTGCTGACAGCATT +
Preference number: 4 (lower is better)
Translates to: GRIQAEVITLGIRIPLPVGRNRD*QIADSI
Trigger: AATGCTGTCAGCAATTTGTCAGTCTCTGTTTCGACC...AACTGGCAATGGGATCCGGATGCCCAGGGTTATCACTTCAGCCTGGATCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp TTCTGCAAAAACACCTGCTGCTGTCTTTGTCCCGTTCAGAGGCATTTCCCCCAAACGCCATTCATTAGCTaGGGGTCTGAGCTGCTCTGT +
Preference number: 4 (lower is better)
Translates to: FCKNTCCCLCPVQRHFPQTPFIS*GSELLC
Trigger: ACAGAGCAGCTCAGACCCCCAGCTAATGAATGGCGT...TTGGGGGAAATGCCTCTGAACGGGACAAAGACAGCAGCAGGTGTTTTTGCAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp CAGGCTGAAGTGATAACCCTGGGCATCCGGATCCCATaGCCAGTTGGAAAGCACGCTTCTTTTCTGTTCTCT +
Preference number: 4 (lower is better)
Translates to: QAEVITLGIRIP*PVGKHASFLFS
Trigger: AGAGAACAGAAAAGAAGCGTGCTTTCCAACTGGCAATGGGATCCGGATGCCCAGGGTTATCACTTCAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp GCCCTCTGGCATCTCACCATACCACCTAGAAAGCGTTaGAACAATGCAAATGGCAGCGCTCAATCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: ALWHLTIPPRKR*NNANGSAQSPE
Trigger: CTCTGGAGATTGAGCGCTGCCATTTGCATTGTTCAAACGCTTTCTAGGTGGTATGGTGAGATGCCAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp GCTTCTCACTGCAGTCAGGAAACGGGCCACAAATGCTaGTGCTTGGTTTGCCTTCTCCTCTTCATCAGTCAG +
Preference number: 4 (lower is better)
Translates to: ASHCSQETGHKC*CLVCLLLFISQ
Trigger: CTGACTGATGAAGAGGAGAAGGCAAACCAAGCACAAGCATTTGTGGCCCGTTTCCTGACTGCAGTGAGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp GCTTTCACACTGGCTGTGATGAGGAGTCTGCAAGGGTACAGGCAGACAATAGGAGAGGGCAGTGACTTGTaGCGCTTCCCATTCATAATT +
Preference number: 4 (lower is better)
Translates to: AFTLAVMRSLQGYRQTIGEGSDL*RFPFII
Trigger: AATTATGAATGGGAAGCGTCACAAGTCACTGCCCTC...TCCTATTGTCTGCCTGTACCCTTGCAGACTCCTCATCACAGCCAGTGTGAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp TCAGAGAGGAATTACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCATACACAGTGTTCCCTaGAGAGCCTGGGCCATCTGT +
Preference number: 4 (lower is better)
Translates to: SERNYWTKARPKTSWSNSIHSVP*RAWAIC
Trigger: ACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTAT...GGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGTAATTCCTCTCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp GCTGAGAATTTGGTGTCTGGGTGTGTCCGTGCCAACTaGGAGGCCCCTTCAACCCTCAATCTAAAGAAATCA +
Preference number: 4 (lower is better)
Translates to: AENLVSGCVRAN*EAPSTLNLKKS
Trigger: TGATTTCTTTAGATTGAGGGTTGAAGGGGCCTCCAAGTTGGCACGGACACACCCAGACACCAAATTCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp GGGGTCTGCAGGCTAGGAGTAAGGGACAAGAAAGCATaGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTT +
Preference number: 4 (lower is better)
Translates to: GVCRLGVRDKKA*AVVTHSSDLLV
Trigger: AACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTTCTTGTCCCTTACTCCTAGCCTGCAGACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR GCA 90 bp GACAAGAAAGCATTGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTTAGAACAAGCCTGGGCCATCTGTaGTCTGGGAGGACTCTGGAT +
Preference number: 4 (lower is better)
Translates to: DKKALAVVTHSSDLLVRTSLGHL*SGRTLD
Trigger: ATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCT...TGTTCTAACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTTCTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR GCA 90 bp AAGCAATGCATCGCTATCCTCCTCTTATTGGCTGTGAGATTAAAGGTCCAAGAAGCTGGGGGTCTGAGCTaGTCTGTGAAACTTCACTCC +
Preference number: 4 (lower is better)
Translates to: KQCIAILLLLAVRLKVQEAGGLS*SVKLHS
Trigger: GGAGTGAAGTTTCACAGAGCAGCTCAGACCCCCAGC...TTCTTGGACCTTTAATCTCACAGCCAATAAGAGGAGGATAGCGATGCATTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp CTCTATGTTTCCATGTTTAATGCCAAGGTGGTCTTCAGAACTCTAGCTCCTTTCCAGGCCAGGTGTATCTaGCAGGTCCCATTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: LYVSMFNAKVVFRTLAPFQARCI*QVPFSS
Trigger: GCTAGAGAATGGGACCTGCCAGATACACCTGGCCTG...GAAAGGAGCTAGAGTTCTGAAGACCACCTTGGCATTAAACATGGAAACATAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp GGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTCCAGAGGGCAGTGACTTGTaGCGCTTCCCATTCATAATT +
Preference number: 4 (lower is better)
Translates to: GPKPDQKPAGQTPNSMFPEGSDL*RFPFII
Trigger: AATTATGAATGGGAAGCGTCACAAGTCACTGCCCTC...TGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CCA 90 bp TCTTCCAAGGGATCAGTAGATGTGTTCTCCCTGGATTTCTTTAAAGTCTTTCGCACGCCATTCATTAGCTaGGGGTCTGAGCTGCTCTGT +
Preference number: 4 (lower is better)
Translates to: SSKGSVDVFSLDFFKVFRTPFIS*GSELLC
Trigger: ACAGAGCAGCTCAGACCCCCAGCTAATGAATGGCGT...GCGAAAGACTTTAAAGAAATCCAGGGAGAACACATCTACTGATCCCTTGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp GAAGAGATGTTTAGAGATAATTGGAGTACCTCAGGTTCCAGATGGGAGAAATGGATACACAGTGTTCCCTaGAGAGCCTGGGCCATCTGT +
Preference number: 4 (lower is better)
Translates to: EEMFRDNWSTSGSRWEKWIHSVP*RAWAIC
Trigger: ACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTAT...CCATTTCTCCCATCTGGAACCTGAGGTACTCCAATTATCTCTAAACATCTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp GCTTGTTCCTTAATATATCTCTTTTGTGCTGAGAATTaGGTGTCTGGGTGTGTCCGTGCCAACTTGGAGGCC +
Preference number: 4 (lower is better)
Translates to: ACSLIYLFCAEN*VSGCVRANLEA
Trigger: GGCCTCCAAGTTGGCACGGACACACCCAGACACCAAATTCTCAGCACAAAAGAGATATATTAAGGAACAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp ATCTGGAGGGGAGGGTGCTTTCACACACCATATCTGTaGCACTTGTCAAACTTGGCTGTGGGTAATGATGTA +
Preference number: 4 (lower is better)
Translates to: IWRGGCFHTPYL*HLSNLAVGNDV
Trigger: TACATCATTACCCACAGCCAAGTTTGACAAGTGCAACAGATATGGTGTGTGAAAGCACCCTCCCCTCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp CATAGGTTCTCTTTATGGTGCCAAGGCTCAGCTTTTTaGCATTACCCCTTCAGTACTGGGCCATCAACTGCA +
Preference number: 4 (lower is better)
Translates to: HRFSLWCQGSAF*HYPFSTGPSTA
Trigger: TGCAGTTGATGGCCCAGTACTGAAGGGGTAATGCAAAAAAGCTGAGCCTTGGCACCATAAAGAGAACCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp GATTTAAGGAAAGAACAGTTTATCCTGGTTTACAATTaGAGGGAGGTCCTTCCATCCTGGTGGGAGGGCGTG +
Preference number: 4 (lower is better)
Translates to: DLRKEQFILVYN*REVLPSWWEGV
Trigger: CACGCCCTCCCACCAGGATGGAAGGACCTCCCTCAAATTGTAAACCAGGATAAACTGTTCTTTCCTTAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp GGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTCCAGGCTTGCCACTCAACTaGGACAGTTTGACTTTGATT +
Preference number: 4 (lower is better)
Translates to: GPKPDQKPAGQTPNSMFPGLPLN*DSLTLI
Trigger: AATCAAAGTCAAACTGTCTCAGTTGAGTGGCAAGCC...TGGAAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CCA 90 bp TCTTCCAAGGGATCAGTAGATGTGTTCTCCCTGGATTTCTTTAAAGTCTTTCGCGAGGCAGAAGACAAGTaGAAAGAGCCAGACCATCCT +
Preference number: 4 (lower is better)
Translates to: SSKGSVDVFSLDFFKVFREAEDK*KEPDHP
Trigger: AGGATGGTCTGGCTCTTTCCACTTGTCTTCTGCCTC...GCGAAAGACTTTAAAGAAATCCAGGGAGAACACATCTACTGATCCCTTGGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp CTCTATGTTTCCATGTTTAATGCCAAGGTGGTCTTCAGAACTCTAGCTCCTTTCGAGGCAGAAGACAAGTaGAAAGAGCCAGACCATCCT +
Preference number: 4 (lower is better)
Translates to: LYVSMFNAKVVFRTLAPFEAEDK*KEPDHP
Trigger: AGGATGGTCTGGCTCTTTCCACTTGTCTTCTGCCTC...GAAAGGAGCTAGAGTTCTGAAGACCACCTTGGCATTAAACATGGAAACATAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp AGAGAAAGCTCCTTTCAGCCCATTCCACTTTTTACCTaGAAACCCAAGATGAAAGGCCTATCCTGTGACCCT +
Preference number: 4 (lower is better)
Translates to: RESSFQPIPLFT*KPKMKGLSCDP
Trigger: AGGGTCACAGGATAGGCCTTTCATCTTGGGTTTCAAGGTAAAAAGTGGAATGGGCTGAAAGGAGCTTTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR GCA 90 bp TACTACACATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTGCTCCTTTGTGGTTATCTaGGCAGTGTATGATCCTGTG +
Preference number: 4 (lower is better)
Translates to: YYTFNQNTVLSLQPITSCSFVVI*AVYDPV
Trigger: CACAGGATCATACACTGCGCAGATAACCACAAAGGA...GCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATGTGTAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR GCA 90 bp CATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTGCTGCCTTCAGTCATAAACCATACTaGATTCCAGGGTGGATTAGT +
Preference number: 4 (lower is better)
Translates to: HLTKTPCSLYSQSHPAAFSHKPY*IPGWIS
Trigger: ACTAATCCACCCTGGAATGCAGTATGGTTTATGACT...GAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CCA 90 bp TCTCTTAGGTCCATTGTCCCTTTCAATGATATGATTCTAGGCTTTCTATCTTATGGGCCATCTGTGCTCTaGGAGGACTCTGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: SLRSIVPFNDMILGFLSYGPSVL*EDSGCW
Trigger: CCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCC...ATAAGATAGAAAGCCTAGAATCATATCATTGAAAGGGACAATGGACCTAAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp AGCAGGATTTGTCCTGGATCTGACTGGAATGTAGTTTaGGGGTTATGTACTACAGATCTTGCTACCCCTGAA +
Preference number: 4 (lower is better)
Translates to: SRICPGSDWNVV*GLCTTDLATPE
Trigger: TTCAGGGGTAGCAAGATCTGTAGTACATAACCCCAAAACTACATTCCAGTCAGATCCAGGACAAATCCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp GCAGACAATAGGAAGAGTGGGACTATACTAAGGACATaGTGCTGGTTGTCTTTTAGACCATGGGTAATGCAG +
Preference number: 4 (lower is better)
Translates to: ADNRKSGTILRT*CWLSFRPWVMQ
Trigger: CTGCATTACCCATGGTCTAAAAGACAACCAGCACAATGTCCTTAGTATAGTCCCACTCTTCCTATTGTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp CAGATCTGGCATTCAGCAGTAACAAACTTCATTCTCTaGAGCTGGTTCCACTCCCTGTTAGCAACTTTCCTT +
Preference number: 4 (lower is better)
Translates to: QIWHSAVTNFIL*SWFHSLLATFL
Trigger: AAGGAAAGTTGCTAACAGGGAGTGGAACCAGCTCAAGAGAATGAAGTTTGTTACTGCTGAATGCCAGATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp TTCTCAGACTGCAGCAGCGACAAAGGCATGTTTTCCTaGAACTTAGAGGAAAATGGGTGCATCAGTTGCTTA +
Preference number: 4 (lower is better)
Translates to: FSDCSSDKGMFS*NLEENGCISCL
Trigger: TAAGCAACTGATGCACCCATTTTCCTCTAAGTTCAAGGAAAACATGCCTTTGTCGCTGCTGCAGTCTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp ACATTGTGCTGGTTGTCTTTTAGACCATGGGTAATGCAGAGACAAGAGCAAAATGGGAGTAGGACTGGGTaGTGTTCAGTCTCTTCTTTA +
Preference number: 4 (lower is better)
Translates to: TLCWLSFRPWVMQRQEQNGSRTG*CSVSSL
Trigger: TAAAGAAGAGACTGAACATCACCCAGTCCTACTCCC...ATTTTGCTCTTGTCTCTGCATTACCCATGGTCTAAAAGACAACCAGCACAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR TCA 90 bp TATGGAGAAATTTCTTCTCTGATAGAGGAGCTAAAAGGTCACAGAGGTCAAACATATCTGCGCAGTGTATaGTCCTGTGTCTGCCATGGT +
Preference number: 4 (lower is better)
Translates to: YGEISSLIEELKGHRGQTYLRSV*SCVCHG
Trigger: ACCATGGCAGACACAGGATCATACACTGCGCAGATA...TGTTTGACCTCTGTGACCTTTTAGCTCCTCTATCAGAGAAGAAATTTCTCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR TCA 90 bp GAAGAGATGTTTAGAGATAATTGGAGTACCTCAGGTTCCAGATGGGAGAAATGGGGCTTGCCACTCAACTaGGACAGTTTGACTTTGATT +
Preference number: 4 (lower is better)
Translates to: EEMFRDNWSTSGSRWEKWGLPLN*DSLTLI
Trigger: AATCAAAGTCAAACTGTCTCAGTTGAGTGGCAAGCC...CCATTTCTCCCATCTGGAACCTGAGGTACTCCAATTATCTCTAAACATCTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR GCA 90 bp CTCTATGTTTCCATGTTTAATGCCAAGGTGGTCTTCAGAACTCTAGCTCCTTTCTCCTTTGTGGTTATCTaGGCAGTGTATGATCCTGTG +
Preference number: 4 (lower is better)
Translates to: LYVSMFNAKVVFRTLAPFSFVVI*AVYDPV
Trigger: CACAGGATCATACACTGCGCAGATAACCACAAAGGA...GAAAGGAGCTAGAGTTCTGAAGACCACCTTGGCATTAAACATGGAAACATAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CCA 90 bp GAAGAGATGTTTAGAGATAATTGGAGTACCTCAGGTTCCAGATGGGAGAAATGGCTTCAGAGTCCTTTGTaGTTATCTGCGCAGTGTATG +
Preference number: 4 (lower is better)
Translates to: EEMFRDNWSTSGSRWEKWLQSPL*LSAQCM
Trigger: CATACACTGCGCAGATAACCACAAAGGACTCTGAAG...CCATTTCTCCCATCTGGAACCTGAGGTACTCCAATTATCTCTAAACATCTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp GAGCAATGGAAGCAATGCATCGCTATCCTCCTCTTATaGGCTGTGAGATTAAAGGTCCAAGAACATAGAAAA +
Preference number: 4 (lower is better)
Translates to: EQWKQCIAILLL*AVRLKVQEHRK
Trigger: TTTTCTATGTTCTTGGACCTTTAATCTCACAGCCAATAAGAGGAGGATAGCGATGCATTGCTTCCATTGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp CTGGGAAGGTCTTTTATAGAAGATGATGTATTTAAGTaGAGGTCTAAAGTACAGGAGGAACCCAACAGGCAG +
Preference number: 4 (lower is better)
Translates to: LGRSFIEDDVFK*RSKVQEEPNRQ
Trigger: CTGCCTGTTGGGTTCCTCCTGTACTTTAGACCTCAACTTAAATACATCATCTTCTATAAAAGACCTTCCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
3UTR CAA 72 bp TTGTGGTATCCAAGGCATCTTCTGTGTTACAGCTTCTaGTTCCAGTGTCTGAGATCTACACATGATTTTCTG +
Preference number: 4 (lower is better)
Translates to: LWYPRHLLCYSF*FQCLRSTHDFL
Trigger: CAGAAAATCATGTGTAGATCTCAGACACTGGAACAAGAAGCTGTAACACAGAAGATGCCTTGGATACCACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp GCCAGATACTACACATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATTACATCAGTGTTCATaGTTTGTGGACTTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: ARYYTFNQNTVLSLQPITLHQCS*FVDFQD
Trigger: ATCCTGAAAGTCCACAAATCATGAACACTGATGTAA...TGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATGTGTAGTATCTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR TCA 90 bp TCTCTTAGGTCCATTGTCCCTTTCAATGATATGATTCTAGGCTTTCTATCTTATTATCTGCGCAGTGTATaGTCCTGTGTCTGCCATGGT +
Preference number: 4 (lower is better)
Translates to: SLRSIVPFNDMILGFLSYYLRSV*SCVCHG
Trigger: ACCATGGCAGACACAGGATCATACACTGCGCAGATA...ATAAGATAGAAAGCCTAGAATCATATCATTGAAAGGGACAATGGACCTAAGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp AAAGCATTGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTTAGAACATGTCAATTACATCAGTGTTCATaGTTTGTGGACTTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: KALAVVTHSSDLLVRTCQLHQCS*FVDFQD
Trigger: ATCCTGAAAGTCCACAAATCATGAACACTGATGTAA...TTGACATGTTCTAACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR TCA 90 bp ATGGTGATTTTAGATTTCATCAAGTTGACAATCAAGATTAACCATCTCAGTGGGGGTCGAAACAGAGACTaGCAAATTGCTGACAGCATT +
Preference number: 4 (lower is better)
Translates to: MVILDFIKLTIKINHLSGGRNRD*QIADSI
Trigger: AATGCTGTCAGCAATTTGTCAGTCTCTGTTTCGACC...CCCACTGAGATGGTTAATCTTGATTGTCAACTTGATGAAATCTAAAATCACCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
3UTR CAA 72 bp AGATTTGTTTCCATGGTGATTTTAGATTTCATCAAGTaGACAATCAAGATTAACCATCTCAGTGGGAGAAAC +
Preference number: 4 (lower is better)
Translates to: RFVSMVILDFIK*TIKINHLSGRN
Trigger: GTTTCTCCCACTGAGATGGTTAATCTTGATTGTCAACTTGATGAAATCTAAAATCACCATGGAAACAAATCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS CCA 90 bp CATTGGACGAGTGACTTGTGCATACACAGTGTTCCCTGGAGAGCCTaGGCCATCTGTGCTCTGGGAGGACTCTGGATGTTGGCTAGTCAA +
Preference number: 5 (lower is better)
Translates to: HWTSDLCIHSVPWRA*AICALGGLWMLASQ
Trigger: TTGACTAGCCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACTCGTCCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CCA 90 bp CATTTCCTGCATTGGACGAGTGACTTGTGCATACACAGTGTTCCCTaGAGAGCCTGGGCCATCTGTGCTCTGGGAGGACTCTGGATGTTG +
Preference number: 5 (lower is better)
Translates to: HFLHWTSDLCIHSVP*RAWAICALGGLWML
Trigger: CAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACTCGTCCAATGCAGGAAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171330.7
ENSMUST00000195656.6
CDS CCA 90 bp TGTTTCCTGCATTGGACGAGTGACTTGTGCATACACAGTGTTCCCTaGAGAGCCTGGGCCATCTGTGCTCTGGGAGGACTCTGGATGTTG +
Preference number: 5 (lower is better)
Translates to: CFLHWTSDLCIHSVP*RAWAICALGGLWML
Trigger: CAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACTCGTCCAATGCAGGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194561.2
CDS CCA 90 bp AGTGTTCCCTGGAGAGCCTGGGCCATCTGTGCTCTGGGAGGACTCTaGATGTTGGCTAGTCAAAGGAAGAGAACCTCTTCTCTTCCAAAC +
Preference number: 5 (lower is better)
Translates to: SVPWRAWAICALGGL*MLASQRKRTSSLPN
Trigger: GTTTGGAAGAGAAGAGGTTCTCTTCCTTTGACTAGCCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CCA 90 bp TGTGCATACACAGTGTTCCCTGGAGAGCCTGGGCCATCTGTGCTCTaGGAGGACTCTGGATGTTGGCTAGTCAAAGGAAGAGAACCTCTT +
Preference number: 5 (lower is better)
Translates to: CAYTVFPGEPGPSVL*EDSGCWLVKGREPL
Trigger: AAGAGGTTCTCTTCCTTTGACTAGCCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp ACCTGCTGCTGTCTTTGTCCCGTTCAGAGGCATTTCCCCCAACCCCCAGCCAATACCCTCAGAATATATTaGAAGGTGATCACTTCAGAG +
Preference number: 5 (lower is better)
Translates to: TCCCLCPVQRHFPQPPANTLRIY*KVITSE
Trigger: CTCTGAAGTGATCACCTTCAAATATATTCTGAGGGT...ATTGGCTGGGGGTTGGGGGAAATGCCTCTGAACGGGACAAAGACAGCAGCAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp CTGGGCATCCGGATCCCATTGCCAGTTGGAAAGCACGCTTCTTTTCTGTTCTCTTTAGTTAGAACCCCTTaGCAGAGACTCTGGGTCGAA +
Preference number: 5 (lower is better)
Translates to: LGIRIPLPVGKHASFLFSLVRTP*QRLWVE
Trigger: TTCGACCCAGAGTCTCTGCAAAGGGGTTCTAACTAA...AGAGAACAGAAAAGAAGCGTGCTTTCCAACTGGCAATGGGATCCGGATGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS TCA 90 bp GAAGGTGATCACTTCAGAGTCCTTTGTGGTTATCTGCGCAGTGTATaGTCCTGTGTCTGCCATGGTAAGGTTGCTGATTTGCAGGGAGTA +
Preference number: 5 (lower is better)
Translates to: EGDHFRVLCGYLRSV*SCVCHGKVADLQGV
Trigger: TACTCCCTGCAAATCAGCAACCTTACCATGGCAGACACAGGATCATACACTGCGCAGATAACCACAAAGGACTCTGAAGTGATCACCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CCA 90 bp ACTGCATTCCAGGGTGGATTAGTTAGAACCCCTTTGCAGAGACTCTaGGTCGAAACAGAGACTGACAAATTGCTGACAGCATTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: TAFQGGLVRTPLQRL*VETETDKLLTAFLA
Trigger: AGCCAAGAATGCTGTCAGCAATTTGTCAGTCTCTGTTTCGACCCAGAGTCTCTGCAAAGGGGTTCTAACTAATCCACCCTGGAATGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp ACTGGACCAAAGCCAGACCAAAAACCAGCTGGTCAAACTCCAAACTCTATGTTTGGAGGACTCTGGATGTaGGCTAGTCAAAGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: TGPKPDQKPAGQTPNSMFGGLWM*ASQRKR
Trigger: TCTCTTCCTTTGACTAGCCAACATCCAGAGTCCTCC...AAACATAGAGTTTGGAGTTTGACCAGCTGGTTTTTGGTCTGGCTTTGGTCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp ATCACATCCTGCTGCCTTCTAGAAGGAGAAGTGATTACTTGCGGAATCAATCTGTCACTTCAGAGTCCTTaGTGGTTATCTGCGCAGTGT +
Preference number: 5 (lower is better)
Translates to: ITSCCLLEGEVITCGINLSLQSP*WLSAQC
Trigger: ACACTGCGCAGATAACCACAAAGGACTCTGAAGTGA...CAGATTGATTCCGCAAGTAATCACTTCTCCTTCTAGAAGGCAGCAGGATGTGAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CAA 90 bp AAGCACGCTTCTTTTCTGTTCTCTTCCAAGGGATCAGTAGATGTGTTCTCCCTGACAGAGACTGACAAATaGCTGACAGCATTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: KHASFLFSSKGSVDVFSLTETDK*LTAFLA
Trigger: AGCCAAGAATGCTGTCAGCAATTTGTCAGTCTCTGT...CAGGGAGAACACATCTACTGATCCCTTGGAAGAGAACAGAAAAGAAGCGTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CAA 90 bp AAGCAATGCATCGCTATCCTCCTCTTATTGGCTGTGAGATTAAAGGTCCAAGAAGGAGGACTCTGGATGTaGGCTAGTCAAAGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: KQCIAILLLLAVRLKVQEGGLWM*ASQRKR
Trigger: TCTCTTCCTTTGACTAGCCAACATCCAGAGTCCTCC...TTCTTGGACCTTTAATCTCACAGCCAATAAGAGGAGGATAGCGATGCATTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CAA 90 bp AAGCAATGCATCGCTATCCTCCTCTTATTGGCTGTGAGATTAAAGGTCCAAGAATTCCAGATGATGATATaGGCTATCTTCCCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: KQCIAILLLLAVRLKVQEFQMMI*AIFPAG
Trigger: TCCTGCAGGGAAGATAGCCAATATCATCATCTGGAA...TTCTTGGACCTTTAATCTCACAGCCAATAAGAGGAGGATAGCGATGCATTGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CAA 90 bp CTCTATGTTTCCATGTTTAATGCCAAGGTGGTCTTCAGAACTCTAGCTCCTTTCTTCCAGATGATGATATaGGCTATCTTCCCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: LYVSMFNAKVVFRTLAPFFQMMI*AIFPAG
Trigger: TCCTGCAGGGAAGATAGCCAATATCATCATCTGGAA...GAAAGGAGCTAGAGTTCTGAAGACCACCTTGGCATTAAACATGGAAACATAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp CATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACATCCTGCTGCCTTCATCAGTGTTCATGATTaGTGGACTTTCAGGATTACT +
Preference number: 5 (lower is better)
Translates to: HLTKTPCSLYSQSHPAAFISVHD*WTFRIT
Trigger: AGTAATCCTGAAAGTCCACAAATCATGAACACTGAT...GAAGGCAGCAGGATGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CAA 90 bp AAAGCATTGGCCGTTGTCACTCATTCCAGTGATCTGTTAGTTAGAACATGTCAATTAGTTAGAACCCCTTaGCAGAGACTCTGGGTCGAA +
Preference number: 5 (lower is better)
Translates to: KALAVVTHSSDLLVRTCQLVRTP*QRLWVE
Trigger: TTCGACCCAGAGTCTCTGCAAAGGGGTTCTAACTAA...TTGACATGTTCTAACTAACAGATCACTGGAATGAGTGACAACGGCCAATGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp GCCAGATACTACACATTTAACCAAAACACCGTGCTCTCTCTACAGCCAATCACAACCCTCAGAATATATTaGAAGGTGATCACTTCAGAG +
Preference number: 5 (lower is better)
Translates to: ARYYTFNQNTVLSLQPITTLRIY*KVITSE
Trigger: CTCTGAAGTGATCACCTTCAAATATATTCTGAGGGT...TGTGATTGGCTGTAGAGAGAGCACGGTGTTTTGGTTAAATGTGTAGTATCTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171330.7
CDS-3UTR CAA 90 bp AGAGAAAGCTCCTTTCAGCCCATTCCACTTTTTACCTTGAAACCCAAGATGAAAACAGAGACTGACAAATaGCTGACAGCATTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: RESSFQPIPLFTLKPKMKTETDK*LTAFLA
Trigger: AGCCAAGAATGCTGTCAGCAATTTGTCAGTCTCTGT...TTTCATCTTGGGTTTCAAGGTAAAAAGTGGAATGGGCTGAAAGGAGCTTTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS-3UTR CAA 90 bp AGAGAAAGCTCCTTTCAGCCCATTCCACTTTTTACCTTGAAACCCAAGATGAAAATCAGTGTTCATGATTaGTGGACTTTCAGGATTACT +
Preference number: 5 (lower is better)
Translates to: RESSFQPIPLFTLKPKMKISVHD*WTFRIT
Trigger: AGTAATCCTGAAAGTCCACAAATCATGAACACTGAT...TTTCATCTTGGGTTTCAAGGTAAAAAGTGGAATGGGCTGAAAGGAGCTTTCTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195656.6
CDS CCA 72 bp CATTGGACGAGTGACTTGTGCATACACAGTGTTCCCTaGAGAGCCTGGGCCATCTGTGCTCTGGGAGGACTC +
Preference number: 6 (lower is better)
Translates to: HWTSDLCIHSVP*RAWAICALGGL
Trigger: GAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACTCGTCCAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CCA 72 bp ACAGTGTTCCCTGGAGAGCCTGGGCCATCTGTGCTCTaGGAGGACTCTGGATGTTGGCTAGTCAAAGGAAGA +
Preference number: 6 (lower is better)
Translates to: TVFPGEPGPSVL*EDSGCWLVKGR
Trigger: TCTTCCTTTGACTAGCCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CCA 72 bp AGTGACTTGTGCATACACAGTGTTCCCTGGAGAGCCTaGGCCATCTGTGCTCTGGGAGGACTCTGGATGTTG +
Preference number: 6 (lower is better)
Translates to: SDLCIHSVPWRA*AICALGGLWML
Trigger: CAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CAA 72 bp GCCTGGGCCATCTGTGCTCTGGGAGGACTCTGGATGTaGGCTAGTCAAAGGAAGAGAACCTCTTCTCTTCCA +
Preference number: 6 (lower is better)
Translates to: AWAICALGGLWM*ASQRKRTSSLP
Trigger: TGGAAGAGAAGAGGTTCTCTTCCTTTGACTAGCCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS TCA 72 bp AGCCGGTTAAAGCCACTGTTTCCTGCATTGGACGAGTaGCTTGTGCATACACAGTGTTCCCTGGAGAGCCTG +
Preference number: 6 (lower is better)
Translates to: SRLKPLFPALDE*LVHTQCSLESL
Trigger: CAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACTCGTCCAATGCAGGAAACAGTGGCTTTAACCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194561.2
CDS CCA 72 bp CCTGGGCCATCTGTGCTCTGGGAGGACTCTGGATGTTaGCTAGTCAAAGGAAGAGAACCTCTTCTCTTCCAA +
Preference number: 6 (lower is better)
Translates to: PGPSVLWEDSGC*LVKGREPLLFQ
Trigger: TTGGAAGAGAAGAGGTTCTCTTCCTTTGACTAGCCAACATCCAGAGTCCTCCCAGAGCACAGATGGCCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CAA 72 bp AGCATCTCTTTGTCCTACAAACTTGCCCCAGTGGTCTaGTCTTTCCCCAATCCCTCCGAATTCTTCCCTCCC +
Preference number: 6 (lower is better)
Translates to: SISLSYKLAPVV*SFPNPSEFFPP
Trigger: GGGAGGGAAGAATTCGGAGGGATTGGGGAAAGACAAGACCACTGGGGCAAGTTTGTAGGACAAAGAGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194182.2
CDS CAA 72 bp CCTTCTTCTCAGAGAGCATCTCTTTGTCCTACAAACTaGCCCCAGTGGTCTTGTCTTTCCCCAATCCCTCCG +
Preference number: 6 (lower is better)
Translates to: PSSQRASLCPTN*PQWSCLSPIPP
Trigger: CGGAGGGATTGGGGAAAGACAAGACCACTGGGGCAAGTTTGTAGGACAAAGAGATGCTCTCTGAGAAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194182.2
CDS GCA 72 bp CTTCTTCTCAGAGAGCATCTCTTTGTCCTACAAACTTaGCCCAGTGGTCTTGTCTTTCCCCAATCCCTCCGA +
Preference number: 6 (lower is better)
Translates to: LLLREHLFVLQT*PSGLVFPQSLR
Trigger: TCGGAGGGATTGGGGAAAGACAAGACCACTGGGGCAAGTTTGTAGGACAAAGAGATGCTCTCTGAGAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194182.2
CDS CAA 90 bp GAGACATCTCCTTCTTCTCAGAGAGCATCTCTTTGTCCTACAAACTaGCCCCAGTGGTCTTGTCTTTCCCCAATCCCTCCGAATTCTTCC +
Preference number: 6 (lower is better)
Translates to: ETSPSSQRASLCPTN*PQWSCLSPIPPNSS
Trigger: GGAAGAATTCGGAGGGATTGGGGAAAGACAAGACCACTGGGGCAAGTTTGTAGGACAAAGAGATGCTCTCTGAGAAGAAGGAGATGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194182.2
CDS CAA 90 bp TTTGATAGGTTTTGGGATTTTCATTTCCTGCATTGGACGAGTGACTaGTGCATACACAGTGTTCCCTGGAGAGCCTGGGCCATCTGTGCT +
Preference number: 6 (lower is better)
Translates to: FDRFWDFHFLHWTSD*CIHSVPWRAWAICA
Trigger: AGCACAGATGGCCCAGGCTCTCCAGGGAACACTGTGTATGCACAAGTCACTCGTCCAATGCAGGAAATGAAAATCCCAAAACCTATCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171330.7
ENSMUST00000195656.6
CDS GCA 72 bp TTGAAGGTGATCACTTCAGAGTCCTTTGTGGTTATCTaGGCAGTGTATGATCCTGTGTCTGCCATGGTAAGG +
Preference number: 6 (lower is better)
Translates to: LKVITSESFVVI*AVYDPVSAMVR
Trigger: CCTTACCATGGCAGACACAGGATCATACACTGCGCAGATAACCACAAAGGACTCTGAAGTGATCACCTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CAA 72 bp GTGTTCATGATTTGTGGACTTTCAGGATTACTTAGGTaGATAACGAGGGCAGTGACTTGTGACGCTTCCCAT +
Preference number: 6 (lower is better)
Translates to: VFMICGLSGLLR*ITRAVTCDASH
Trigger: ATGGGAAGCGTCACAAGTCACTGCCCTCGTTATCAACCTAAGTAATCCTGAAAGTCCACAAATCATGAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS TCA 72 bp CCAGCACACAAAGATGAGTATGACAGCACTGATTATTaGAATTGTAGTCATAAACCATACTGCATTCCAGGG +
Preference number: 6 (lower is better)
Translates to: PAHKDEYDSTDY*NCSHKPYCIPG
Trigger: CCCTGGAATGCAGTATGGTTTATGACTACAATTTCAATAATCAGTGCTGTCATACTCATCTTTGTGTGCTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6
CDS CAA 72 bp AAGTTACCCAGTCGTTCAAAGACCCTCAGAATATATTaGAAGGTGATCACTTCAGAGTCCTTTGTGGTTATC +
Preference number: 6 (lower is better)
Translates to: KLPSRSKTLRIY*KVITSESFVVI
Trigger: GATAACCACAAAGGACTCTGAAGTGATCACCTTCAAATATATTCTGAGGGTCTTTGAACGACTGGGTAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171330.7
ENSMUST00000194561.2
ENSMUST00000195656.6