RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022372

Ensembl transcript IDs: ENSMUST00000100572.10, ENSMUST00000164163.8, ENSMUST00000168522.2, ENSMUST00000168589.8

Found 134 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTAAAGGCAGTCTCTGTGTGGTTTCCCTTGATTCCTGGAAGACCTaGGGTAACCAAGGAGGAATGCTGGCCTCCGTAAGACCCCAGGTG +
Preference number: 1 (lower is better)
Translates to: CKGSLCVVSLDSWKT*GNQGGMLASVRPQV
Trigger: CACCTGGGGTCTTACGGAGGCCAGCATTCCTCCTTGGTTACCTCAGGTCTTCCAGGAATCAAGGGAAACCACACAGAGACTGCCTTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR TCA 90 bp TGCTTGTACCATCTGCAGGCTGAGCCCAGGTATATGGAATGCACATaGTGGGTGACAAATCCCTCCTGTATTTCTCTTACCAAGAATCCT +
Preference number: 1 (lower is better)
Translates to: CLYHLQAEPRYMECT*WVTNPSCISLTKNP
Trigger: AGGATTCTTGGTAAGAGAAATACAGGAGGGATTTGTCACCCATCATGTGCATTCCATATACCTGGGCTCAGCCTGCAGATGGTACAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR CCA 90 bp GAAGTCATCTTCCCCATGTTCTTTCTCAGATGGATGCTTTCCACATaGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCT +
Preference number: 1 (lower is better)
Translates to: EVIFPMFFLRWMLST*SQRRAIWISSWSQS
Trigger: AGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCATCCATCTGAGAAAGAACATGGGGAAGATGACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CCA 90 bp ATAGGTGTGAGAGAGAATGAAGGCTTCTCTTTCCTTAGTGCCCTGTaGGTTTTCTCTCACCTCTCACAATCATCTATGGCAGCATTCAGC +
Preference number: 1 (lower is better)
Translates to: IGVRENEGFSFLSAL*VFSHLSQSSMAAFS
Trigger: GCTGAATGCTGCCATAGATGATTGTGAGAGGTGAGAGAAAACCCACAGGGCACTAAGGAAAGAGAAGCCTTCATTCTCTCTCACACCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 90 bp CCCTCCTGTATTTCTCTTACCAAGAATCCTTGTGATAGACAGGGATaGATAGCCATGACTATCCTGTCTCCCATTCCAGCAGGATATAGG +
Preference number: 1 (lower is better)
Translates to: PSCISLTKNPCDRQG*IAMTILSPIPAGYR
Trigger: CCTATATCCTGCTGGAATGGGAGACAGGATAGTCATGGCTATTCATCCCTGTCTATCACAAGGATTCTTGGTAAGAGAAATACAGGAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 90 bp ACCATCTGCAGGCTGAGCCCAGGTATATGGAATGCACATGATGGGTaGCAAATCCCTCCTGTATTTCTCTTACCAAGAATCCTTGTGATA +
Preference number: 1 (lower is better)
Translates to: TICRLSPGIWNAHDG*QIPPVFLLPRILVI
Trigger: TATCACAAGGATTCTTGGTAAGAGAAATACAGGAGGGATTTGTCACCCATCATGTGCATTCCATATACCTGGGCTCAGCCTGCAGATGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR CCA 90 bp TTTCTCAGATGGATGCTTTCCACATGGTCTCAGAGAAGGGCCATTTaGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTTGCAAAAGTG +
Preference number: 1 (lower is better)
Translates to: FLRWMLSTWSQRRAI*ISSWSQSPSTLAKV
Trigger: CACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCATCCATCTGAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CCA 90 bp ATGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTaGAGTCAGTCTCCAAGTACTCTTGCAAAAGTGTTCTGTTCTACA +
Preference number: 1 (lower is better)
Translates to: MLSTWSQRRAIWISS*SQSPSTLAKVFCST
Trigger: TGTAGAACAGAACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR GCA 90 bp AAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTTaGAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCA +
Preference number: 1 (lower is better)
Translates to: KGHLDFELESVSKYS*KSVLFYIHTQFFDA
Trigger: TGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp GGTAGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCACTGTGTGGTTTCCCTTaGTTCCTGGAAGACCTGAGG +
Preference number: 2 (lower is better)
Translates to: GSLAPGRGHSGARKSSSPLCGFP*FLEDLR
Trigger: CCTCAGGTCTTCCAGGAATCAAGGGAAACCACACAG...TGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp CACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGCTGTGTGGTTTCCCTTaGTTCCTGGAAGACCTGAGG +
Preference number: 2 (lower is better)
Translates to: HMVSEKGHLDFELESVSKLCGFP*FLEDLR
Trigger: CCTCAGGTCTTCCAGGAATCAAGGGAAACCACACAG...CTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp GCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCGATTCCTGGAAGACCTaGGGTAACCAAGGAGGAATG +
Preference number: 2 (lower is better)
Translates to: APGRGHSGARKSSSPCSFDSWKT*GNQGGM
Trigger: CATTCCTCCTTGGTTACCTCAGGTCTTCCAGGAATC...GAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp TCCCCTTTCCCAGAAAGGGGCATTCTTATTCATGCAGACGCCAGCCCTTCTTACAGGGAAGAGTTCCTCTaGTCAGTGTGTAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: SPFPERGILIHADASPSYREEFL*SVCKGS
Trigger: ACTGCCTTTACACACTGATCAGAGGAACTCTTCCCT...GTAAGAAGGGCTGGCGTCTGCATGAATAAGAATGCCCCTTTCTGGGAAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR-3UTR TCA 90 bp TGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTGATTCCTGGAAGACCTaGGGTAACCAAGGAGGAATG +
Preference number: 2 (lower is better)
Translates to: CFPHGLREGPFGFRVGVSDSWKT*GNQGGM
Trigger: CATTCCTCCTTGGTTACCTCAGGTCTTCCAGGAATC...ACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp GGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCAGGGAAGAGTTCCTCTaGTCAGTGTGTAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: GLREGPFGFRVGVSLQVLREEFL*SVCKGS
Trigger: ACTGCCTTTACACACTGATCAGAGGAACTCTTCCCT...GAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp GTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTACACACACAGTTCTTTaGCGCACTGCCCCATTTCAT +
Preference number: 2 (lower is better)
Translates to: VWLQVEVILELGSHLPHVTHTVL*RTAPFH
Trigger: ATGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGT...AACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR CCA 90 bp GGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCAAGGCAGTCTCTGTGTaGTTTCCCTTGATTCCTGGA +
Preference number: 2 (lower is better)
Translates to: GLREGPFGFRVGVSLQVLKAVSV*FPLIPG
Trigger: TCCAGGAATCAAGGGAAACCACACAGAGACTGCCTT...GAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR CCA 90 bp GCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCTGGATGCTTTCCACATaGTCTCAGAGAAGGGCCATT +
Preference number: 2 (lower is better)
Translates to: APGRGHSGARKSSSPCSFWMLST*SQRRAI
Trigger: AATGGCCCTTCTCTGAGACCATGTGGAAAGCATCCA...GAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp TTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCACACACACAGTTCTTTaGCGCACTGCCCCATTTCAT +
Preference number: 2 (lower is better)
Translates to: FPHGLREGPFGFRVGVSLTHTVL*RTAPFH
Trigger: ATGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGT...GAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CAA 90 bp GATGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTaGGAGTCAGTCTCCAAGTACTCTTGCAAAAGTGTTCTGTTCTAC +
Preference number: 2 (lower is better)
Translates to: DAFHMVSEKGHLDFE*ESVSKYSCKSVLFY
Trigger: GTAGAACAGAACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CAA 90 bp CTTTCTCAGATGGATGCTTTCCACATGGTCTCAGAGAAGGGCCATTaGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTTGCAAAAGT +
Preference number: 2 (lower is better)
Translates to: LSQMDAFHMVSEKGH*DFELESVSKYSCKS
Trigger: ACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCATCCATCTGAGAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp GGTAGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGCCCCATTTCATCATaGTTTAAACATGATGTGACT +
Preference number: 2 (lower is better)
Translates to: GSLAPGRGHSGARKSSSPCPISS*FKHDVT
Trigger: AGTCACATCATGTTTAAATCATGATGAAATGGGGCA...TGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp AGTACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACGATTCCTGGAAGACCTaGGGTAACCAAGGAGGAATG +
Preference number: 2 (lower is better)
Translates to: STLAKVFCSTYTHSSLTHDSWKT*GNQGGM
Trigger: CATTCCTCCTTGGTTACCTCAGGTCTTCCAGGAATC...GTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR CCA 90 bp AAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCCCATTTCAAAGGCAGTCTCTGTGTaGTTTCCCTTGATTCCTGGA +
Preference number: 2 (lower is better)
Translates to: KVFCSTYTHSSLTHCPISKAVSV*FPLIPG
Trigger: TCCAGGAATCAAGGGAAACCACACAGAGACTGCCTT...TGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR TCA 90 bp TGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTTGCCCCATTTCATCATaGTTTAAACATGATGTGACT +
Preference number: 2 (lower is better)
Translates to: CFPHGLREGPFGFRVGVSCPISS*FKHDVT
Trigger: AGTCACATCATGTTTAAATCATGATGAAATGGGGCA...ACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR GCA 90 bp CTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAGAGAACACCCATGCTCTTTCTCAGATGGATaGTTTCCACATGGTCTCAGA +
Preference number: 2 (lower is better)
Translates to: LTSIFEIAILKDLREHPCSFSDG*FPHGLR
Trigger: TCTGAGACCATGTGGAAAGCATCCATCTGAGAAAGA...GCATGGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR-3UTR CCA 90 bp TTTGTTTCTCACACACTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAAGGCAGTCTCTGTGTaGTTTCCCTTGATTCCTGGA +
Preference number: 2 (lower is better)
Translates to: FVSHTLTSIFEIAILKDLKAVSV*FPLIPG
Trigger: TCCAGGAATCAAGGGAAACCACACAGAGACTGCCTT...GAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAGTGTGTGAGAAACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR-3UTR CCA 90 bp TTTGTTTCTCACACACTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCTTCCTTAGTGCCCTGTaGGTTTTCTCTCACCTCTCA +
Preference number: 2 (lower is better)
Translates to: FVSHTLTSIFEIAILKDLFLSAL*VFSHLS
Trigger: TGAGAGGTGAGAGAAAACCCACAGGGCACTAAGGAA...GAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAGTGTGTGAGAAACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR-3UTR CAA 90 bp TCCCCTTTCCCAGAAAGGGGCATTCTTATTCATGCAGACGCCAGCCCTTCTTACTCTGTGTGGTTTCCCTaGATTCCTGGAAGACCTGAG +
Preference number: 3 (lower is better)
Translates to: SPFPERGILIHADASPSYSVWFP*IPGRPE
Trigger: CTCAGGTCTTCCAGGAATCAAGGGAAACCACACAGA...GTAAGAAGGGCTGGCGTCTGCATGAATAAGAATGCCCCTTTCTGGGAAAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 72 bp AGTCTCTGTGTGGTTTCCCTTGATTCCTGGAAGACCTaGGGTAACCAAGGAGGAATGCTGGCCTCCGTAAGA +
Preference number: 3 (lower is better)
Translates to: SLCVVSLDSWKT*GNQGGMLASVR
Trigger: TCTTACGGAGGCCAGCATTCCTCCTTGGTTACCTCAGGTCTTCCAGGAATCAAGGGAAACCACACAGAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR TCA 72 bp CATCTGCAGGCTGAGCCCAGGTATATGGAATGCACATaGTGGGTGACAAATCCCTCCTGTATTTCTCTTACC +
Preference number: 3 (lower is better)
Translates to: HLQAEPRYMECT*WVTNPSCISLT
Trigger: GGTAAGAGAAATACAGGAGGGATTTGTCACCCATCATGTGCATTCCATATACCTGGGCTCAGCCTGCAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR-3UTR CAA 90 bp GGTAGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCAAGTCTCCAAGTACTCTaGCAAAAGTGTTCTGTTCTA +
Preference number: 3 (lower is better)
Translates to: GSLAPGRGHSGARKSSSPSLQVL*QKCSVL
Trigger: TAGAACAGAACACTTTTGCAAGAGTACTTGGAGACT...TGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR TCA 72 bp AGGAGCCAGAGATCATGGCCTCATAGCAGAAGTTACTaGCCTTGTGTGACATTTGTTTCTCACACACTGACG +
Preference number: 3 (lower is better)
Translates to: RSQRSWPHSRSY*PCVTFVSHTLT
Trigger: CGTCAGTGTGTGAGAAACAAATGTCACACAAGGTCAGTAACTTCTGCTATGAGGCCATGATCTCTGGCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR CCA 72 bp TGGATGCTTTCCACATGGTCTCAGAGAAGGGCCATTTaGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTT +
Preference number: 3 (lower is better)
Translates to: WMLSTWSQRRAI*ISSWSQSPSTL
Trigger: AAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR CAA 90 bp AGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTAGTCTCCAAGTACTCTaGCAAAAGTGTTCTGTTCTA +
Preference number: 3 (lower is better)
Translates to: SLAPGRGHSGARKSSSPCSLQVL*QKCSVL
Trigger: TAGAACAGAACACTTTTGCAAGAGTACTTGGAGACT...ACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR GCA 72 bp ATTCAGGGTTACATCATGTTGTTCTCCTTATCTCTCTaGTCCAGCCGGAATCCCAGCATTAAGGAATTCCAC +
Preference number: 3 (lower is better)
Translates to: IQGYIMLFSLSL*SSRNPSIKEFH
Trigger: GTGGAATTCCTTAATGCTGGGATTCCGGCTGGAGCAGAGAGATAAGGAGAACAACATGATGTAACCCTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR CCA 72 bp ACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTaGAGTCAGTCTCCAAGTACTCTTGCAAAAGTGTTC +
Preference number: 3 (lower is better)
Translates to: TWSQRRAIWISS*SQSPSTLAKVF
Trigger: GAACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CCA 72 bp AGAGAGAATGAAGGCTTCTCTTTCCTTAGTGCCCTGTaGGTTTTCTCTCACCTCTCACAATCATCTATGGCA +
Preference number: 3 (lower is better)
Translates to: RENEGFSFLSAL*VFSHLSQSSMA
Trigger: TGCCATAGATGATTGTGAGAGGTGAGAGAAAACCCACAGGGCACTAAGGAAAGAGAAGCCTTCATTCTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 72 bp CGCACTGCCCCATTTCATCATGATTTAAACATGATGTaGCTCCACAATACTGATCAGACATCAGGGAAGAGT +
Preference number: 3 (lower is better)
Translates to: RTAPFHHDLNMM*LHNTDQTSGKS
Trigger: ACTCTTCCCTGATGTCTGATCAGTATTGTGGAGTCACATCATGTTTAAATCATGATGAAATGGGGCAGTGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR TCA 72 bp ATTTCTCTTACCAAGAATCCTTGTGATAGACAGGGATaGATAGCCATGACTATCCTGTCTCCCATTCCAGCA +
Preference number: 3 (lower is better)
Translates to: ISLTKNPCDRQG*IAMTILSPIPA
Trigger: TGCTGGAATGGGAGACAGGATAGTCATGGCTATTCATCCCTGTCTATCACAAGGATTCTTGGTAAGAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 72 bp TTAAGGAATTCCACTCATACCTCATTTATTCCCATTTaGCCTCAGCACAGTATTTCACCCAGGCATCTTCCT +
Preference number: 3 (lower is better)
Translates to: LRNSTHTSFIPI*PQHSISPRHLP
Trigger: AGGAAGATGCCTGGGTGAAATACTGTGCTGAGGTCAAATGGGAATAAATGAGGTATGAGTGGAATTCCTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR GCA 72 bp TTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTTaGAAAAGTGTTCTGTTCTACATACACACACAGTTC +
Preference number: 3 (lower is better)
Translates to: LDFELESVSKYS*KSVLFYIHTQF
Trigger: GAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CCA 72 bp TTTAGAAAGAGAAGAGACATAACCCAAAAGTCTCACTaGACCTATAAAGGTAGTTTGGCTCCAGGTAGAGGT +
Preference number: 3 (lower is better)
Translates to: FRKRRDITQKSH*TYKGSLAPGRG
Trigger: ACCTCTACCTGGAGCCAAACTACCTTTATAGGTCCAGTGAGACTTTTGGGTTATGTCTCTTCTCTTTCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR-3UTR CAA 90 bp CTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAGAGAACACCCATGCCTCATTTATTCCCATTaGACCTCAGCACAGTATTTC +
Preference number: 3 (lower is better)
Translates to: LTSIFEIAILKDLREHPCLIYSH*TSAQYF
Trigger: GAAATACTGTGCTGAGGTCAAATGGGAATAAATGAG...GCATGGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 72 bp TGTGACATTTGTTTCTCACACACTGACGAGTATCTTTaGAATAGCCATTTTGAAAGACCTCAGAGAACACCC +
Preference number: 3 (lower is better)
Translates to: CDICFSHTDEYL*NSHFERPQRTP
Trigger: GGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAGTGTGTGAGAAACAAATGTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR TCA 72 bp CAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTaGCGCACTGCCCCATTTCATCATGATTTAAACATG +
Preference number: 3 (lower is better)
Translates to: QKCSVLHTHTVL*RTAPFHHDLNM
Trigger: CATGTTTAAATCATGATGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp GGTAACCAAGGAGGAATGCTGGCCTCCGTAAGACCCCAGGTGACAGTCAAAGCCTCCGGTCGAAGGAGCTaGTGTCATCCCCTGTCAGGG +
Preference number: 4 (lower is better)
Translates to: GNQGGMLASVRPQVTVKASGRRS*CHPLSG
Trigger: CCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGA...GGCTTTGACTGTCACCTGGGGTCTTACGGAGGCCAGCATTCCTCCTTGGTTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp CAGGGTTACATCATGTTGTTCTCCTTATCTCTCTGCTCCAGCCGGAATCCCAGCAGGGCTGGTGCAAGGTaGTGGGTGGGATGTTGGAGC +
Preference number: 4 (lower is better)
Translates to: QGYIMLFSLSLCSSRNPSRAGAR*WVGCWS
Trigger: GCTCCAACATCCCACCCATCACCTTGCACCAGCCCT...GCTGGGATTCCGGCTGGAGCAGAGAGATAAGGAGAACAACATGATGTAACCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR TCA 90 bp GCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCGCGCAAGGTGACAGGTaGACCAGGGCTGGTGCAAGG +
Preference number: 4 (lower is better)
Translates to: APGRGHSGARKSSSPCSFAQGDR*TRAGAR
Trigger: CCTTGCACCAGCCCTGGTTCACCTGTCACCTTGCGC...GAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp CAGGGTTACATCATGTTGTTCTCCTTATCTCTCTGCTCCAGCCGGAATCCCAGCTCCGGTCGAAGGAGCTaGTGTCATCCCCTGTCAGGG +
Preference number: 4 (lower is better)
Translates to: QGYIMLFSLSLCSSRNPSSGRRS*CHPLSG
Trigger: CCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGA...GCTGGGATTCCGGCTGGAGCAGAGAGATAAGGAGAACAACATGATGTAACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp GGTAACCAAGGAGGAATGCTGGCCTCCGTAAGACCCCAGGTGACAGTCAAAGCCGTGCAAGGTGATGGGTaGGATGTTGGAGCAGGTATG +
Preference number: 4 (lower is better)
Translates to: GNQGGMLASVRPQVTVKAVQGDG*DVGAGM
Trigger: CATACCTGCTCCAACATCCCACCCATCACCTTGCAC...GGCTTTGACTGTCACCTGGGGTCTTACGGAGGCCAGCATTCCTCCTTGGTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp GGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCAGGGCTGGTGCAAGGTaGTGGGTGGGATGTTGGAGC +
Preference number: 4 (lower is better)
Translates to: GLREGPFGFRVGVSLQVLRAGAR*WVGCWS
Trigger: GCTCCAACATCCCACCCATCACCTTGCACCAGCCCT...GAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp GTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTGCGCAAGGTGACAGGTaGACCAGGGCTGGTGCAAGG +
Preference number: 4 (lower is better)
Translates to: VSEKGHLDFELESVSKYSAQGDR*TRAGAR
Trigger: CCTTGCACCAGCCCTGGTTCACCTGTCACCTTGCGC...AGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp AGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCCGGTCGAAGGAGCTaGTGTCATCCCCTGTCAGGG +
Preference number: 4 (lower is better)
Translates to: SLAPGRGHSGARKSSSPCSGRRS*CHPLSG
Trigger: CCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGA...ACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp GGTAACCAAGGAGGAATGCTGGCCTCCGTAAGACCCCAGGTGACAGTCAAAGCCGAAGGTGAGCCTTGGTaGGATGTAGTACCAGTTGTT +
Preference number: 4 (lower is better)
Translates to: GNQGGMLASVRPQVTVKAEGEPW*DVVPVV
Trigger: AACAACTGGTACTACATCTCACCAAGGCTCACCTTC...GGCTTTGACTGTCACCTGGGGTCTTACGGAGGCCAGCATTCCTCCTTGGTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCTCAGATGGAGCGCAAGGTGACAGGTaGACCAGGGCTGGTGCAAGG +
Preference number: 4 (lower is better)
Translates to: RGHSGARKSSSPCSFSDGAQGDR*TRAGAR
Trigger: CCTTGCACCAGCCCTGGTTCACCTGTCACCTTGCGC...TCCATCTGAGAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp CAGTGTGTAAAGGCAGTCTCTGTGTGGTTTCCCTTGATTCCTGGAAGACCTGAGCCTCAGCCTTGTCCCTaGCCAGTCCTTCAAACAGCC +
Preference number: 4 (lower is better)
Translates to: QCVKAVSVWFPLIPGRPEPQPCP*PVLQTA
Trigger: GGCTGTTTGAAGGACTGGGCAGGGACAAGGCTGAGG...CTCAGGTCTTCCAGGAATCAAGGGAAACCACACAGAGACTGCCTTTACACACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp CAGTGTGTAAAGGCAGTCTCTGTGTGGTTTCCCTTGATTCCTGGAAGACCTGAGGTGAACCAGGGCTGGTaGAAGGTGATGGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: QCVKAVSVWFPLIPGRPEVNQGW*KVMGGM
Trigger: CATCCCACCCATCACCTTGCACCAGCCCTGGTTCAC...CTCAGGTCTTCCAGGAATCAAGGGAAACCACACAGAGACTGCCTTTACACACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp AGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTGTGAACCAGGGCTGGTaGAAGGTGATGGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: SLAPGRGHSGARKSSSPCVNQGW*KVMGGM
Trigger: CATCCCACCCATCACCTTGCACCAGCCCTGGTTCAC...ACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp GGTAACCAAGGAGGAATGCTGGCCTCCGTAAGACCCCAGGTGACAGTCAAAGCCCCCTCTGAACCTTCTTaGAATCTGGATACCCTCTTC +
Preference number: 4 (lower is better)
Translates to: GNQGGMLASVRPQVTVKAPSEPS*NLDTLF
Trigger: GAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGG...GGCTTTGACTGTCACCTGGGGTCTTACGGAGGCCAGCATTCCTCCTTGGTTACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp GGTAACCAAGGAGGAATGCTGGCCTCCGTAAGACCCCAGGTGACAGTCAAAGCCCCGAAGGTGGAGATGTaGATTTCATGCTATTCCCCA +
Preference number: 4 (lower is better)
Translates to: GNQGGMLASVRPQVTVKAPKVEM*ISCYSP
Trigger: TGGGGAATAGCATGAAATCCACATCTCCACCTTCGG...GGCTTTGACTGTCACCTGGGGTCTTACGGAGGCCAGCATTCCTCCTTGGTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTCCAGACAGGGTGTGGTaGGCACACAGCATAGACCAT +
Preference number: 4 (lower is better)
Translates to: SLAPGRGHSGARKSSSPCPDRVW*AHSIDH
Trigger: ATGGTCTATGCTGTGTGCTCACCACACCCTGTCTGG...ACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCTCAGATGGAAGGGCTGGTGCAAGGTaGTGGGTGGGATGTTGGAGC +
Preference number: 4 (lower is better)
Translates to: RGHSGARKSSSPCSFSDGRAGAR*WVGCWS
Trigger: GCTCCAACATCCCACCCATCACCTTGCACCAGCCCT...TCCATCTGAGAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp AGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCTCAGATGGACCTCAGCCTTGTCCCTaGCCAGTCCTTCAAACAGCC +
Preference number: 4 (lower is better)
Translates to: RGHSGARKSSSPCSFSDGPQPCP*PVLQTA
Trigger: GGCTGTTTGAAGGACTGGGCAGGGACAAGGCTGAGG...TCCATCTGAGAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp CAGGGTTACATCATGTTGTTCTCCTTATCTCTCTGCTCCAGCCGGAATCCCAGCGGCCACACATATCCCTaGAATATAACTTTCCCGGCC +
Preference number: 4 (lower is better)
Translates to: QGYIMLFSLSLCSSRNPSGHTYP*NITFPA
Trigger: GGCCGGGAAAGTTATATTCCAGGGATATGTGTGGCC...GCTGGGATTCCGGCTGGAGCAGAGAGATAAGGAGAACAACATGATGTAACCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR GCA 90 bp GGTAGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCACCCTCTGAACCTTCTTaGAATCTGGATACCCTCTTC +
Preference number: 4 (lower is better)
Translates to: GSLAPGRGHSGARKSSSPPSEPS*NLDTLF
Trigger: GAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGG...TGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp GGTAGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCAACAGGTAAGAGGCAATaGTTTCCCGAAGACCATAGC +
Preference number: 4 (lower is better)
Translates to: GSLAPGRGHSGARKSSSPTGKRQ*FPEDHS
Trigger: GCTATGGTCTTCGGGAAAGCATTGCCTCTTACCTGT...TGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp CCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGCTAATGTCAGGAGATaGGTAGTCAGTCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: PHGLREGPFGFRVGVSLQANVRR*VVSQHS
Trigger: GCTGTGCTGACTGACTACCCATCTCCTGACATTAGC...TTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp GGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCAGCCATGGTACACTCTaGCCACACATATCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: GLREGPFGFRVGVSLQVLSHGTL*PHISLE
Trigger: TTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCT...GAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp GGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTCAAACAGCCAGCCATaGTACACTCTGGCCACACAT +
Preference number: 4 (lower is better)
Translates to: GLREGPFGFRVGVSLQVLSNSQP*YTLATH
Trigger: ATGTGTGGCCAGAGTGTACCATGGCTGGCTGTTTGA...GAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TCAGGGTTACATCATGTTGTTCTCCTTATCTCTCTGCTCCAGCCGGAATCCCAGTCAAACAGCCAGCCATaGTACACTCTGGCCACACAT +
Preference number: 4 (lower is better)
Translates to: SGLHHVVLLISLLQPESQSNSQP*YTLATH
Trigger: ATGTGTGGCCAGAGTGTACCATGGCTGGCTGTTTGA...CTGGGATTCCGGCTGGAGCAGAGAGATAAGGAGAACAACATGATGTAACCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR TCA 90 bp TGTGACTCCACAATACTGATCAGACATCAGGGAAGAGTTCCTCTGATCAGTGTGCCAGGCATTGGAAGGTaGGCCTTGGTGAGATGTAGT +
Preference number: 4 (lower is better)
Translates to: CDSTILIRHQGRVPLISVPGIGR*ALVRCS
Trigger: ACTACATCTCACCAAGGCTCACCTTCCAATGCCTGG...CACACTGATCAGAGGAACTCTTCCCTGATGTCTGATCAGTATTGTGGAGTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp CTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAGAGAACACCCATGCGTGAACCAGGGCTGGTaGAAGGTGATGGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: LTSIFEIAILKDLREHPCVNQGW*KVMGGM
Trigger: CATCCCACCCATCACCTTGCACCAGCCCTGGTTCAC...GCATGGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR GCA 90 bp GCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCCCCTCTGAACCTTCTTaGAATCTGGATACCCTCTTC +
Preference number: 4 (lower is better)
Translates to: APGRGHSGARKSSSPCSFPSEPS*NLDTLF
Trigger: GAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGG...GAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp GTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTGGCCACACATATCCCTaGAATATAACTTTCCCGGCC +
Preference number: 4 (lower is better)
Translates to: VSEKGHLDFELESVSKYSGHTYP*NITFPA
Trigger: GGCCGGGAAAGTTATATTCCAGGGATATGTGTGGCC...AGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTAGCCATGGTACACTCTaGCCACACATATCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: CFPHGLREGPFGFRVGVSSHGTL*PHISLE
Trigger: TTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCT...ACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp GTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTTCAAACAGCCAGCCATaGTACACTCTGGCCACACAT +
Preference number: 4 (lower is better)
Translates to: VSEKGHLDFELESVSKYSSNSQP*YTLATH
Trigger: ATGTGTGGCCAGAGTGTACCATGGCTGGCTGTTTGA...AGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCCCATTTCACCAGACAGGGTGTGGTaGGCACACAGCATAGACCAT +
Preference number: 4 (lower is better)
Translates to: KVFCSTYTHSSLTHCPISPDRVW*AHSIDH
Trigger: ATGGTCTATGCTGTGTGCTCACCACACCCTGTCTGG...TGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp ACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCCAGACAGGGTGTGGTaGGCACACAGCATAGACCAT +
Preference number: 4 (lower is better)
Translates to: TLAKVFCSTYTHSSLTHCPDRVW*AHSIDH
Trigger: ATGGTCTATGCTGTGTGCTCACCACACCCTGTCTGG...GCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp AGTACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACCCTCAGCCTTGTCCCTaGCCAGTCCTTCAAACAGCC +
Preference number: 4 (lower is better)
Translates to: STLAKVFCSTYTHSSLTHPQPCP*PVLQTA
Trigger: GGCTGTTTGAAGGACTGGGCAGGGACAAGGCTGAGG...GTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp TGTGACTCCACAATACTGATCAGACATCAGGGAAGAGTTCCTCTGATCAGTGTGTTTGTATCTGGCAGCTaGAGCAGTTCCTCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: CDSTILIRHQGRVPLISVFVSGS*SSSSAL
Trigger: CAAGGCTGAGGAACTGCTGCAGCTGCCAGATACAAA...CACACTGATCAGAGGAACTCTTCCCTGATGTCTGATCAGTATTGTGGAGTCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp GTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTACAGGTAAGAGGCAATaGTTTCCCGAAGACCATAGC +
Preference number: 4 (lower is better)
Translates to: VSEKGHLDFELESVSKYSTGKRQ*FPEDHS
Trigger: GCTATGGTCTTCGGGAAAGCATTGCCTCTTACCTGT...AGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp GTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTAACTCTTGCGTTTGCTaGCAGTGTACATTAGGGAGA +
Preference number: 4 (lower is better)
Translates to: VWLQVEVILELGSHLPHVNSCVC*QCTLGR
Trigger: TCTCCCTAATGTACACTGGCAGCAAACGCAAGAGTT...AACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TCTCACAATCATCTATGGCAGCATTCAGCTTCTCCAGTTCCCCTTTCCCAGAAAAGCCATGGTACACTCTaGCCACACATATCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SHNHLWQHSASPVPLSQKSHGTL*PHISLE
Trigger: TTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCT...TTTCTGGGAAAGGGGAACTGGAGAAGCTGAATGCTGCCATAGATGATTGTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp TGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTACCAATCTTTGTATCTaGCAGCTGCAGCAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: CFPHGLREGPFGFRVGVSTNLCI*QLQQFL
Trigger: GAGGAACTGCTGCAGCTGCCAGATACAAAGATTGGT...ACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCACCAATCTTTGTATCTaGCAGCTGCAGCAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: FPHGLREGPFGFRVGVSLTNLCI*QLQQFL
Trigger: GAGGAACTGCTGCAGCTGCCAGATACAAAGATTGGT...GAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TCTCACAATCATCTATGGCAGCATTCAGCTTCTCCAGTTCCCCTTTCCCAGAAACAGTCAAAGGTCTTCTaGCGCAAGGTGACAGGTGAA +
Preference number: 4 (lower is better)
Translates to: SHNHLWQHSASPVPLSQKQSKVF*RKVTGE
Trigger: TTCACCTGTCACCTTGCGCCAGAAGACCTTTGACTG...TTTCTGGGAAAGGGGAACTGGAGAAGCTGAATGCTGCCATAGATGATTGTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp TGTGACTCCACAATACTGATCAGACATCAGGGAAGAGTTCCTCTGATCAGTGTGCAGTCAAAGGTCTTCTaGCGCAAGGTGACAGGTGAA +
Preference number: 4 (lower is better)
Translates to: CDSTILIRHQGRVPLISVQSKVF*RKVTGE
Trigger: TTCACCTGTCACCTTGCGCCAGAAGACCTTTGACTG...CACACTGATCAGAGGAACTCTTCCCTGATGTCTGATCAGTATTGTGGAGTCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp TGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTAACTCTTGCGTTTGCTaGCAGTGTACATTAGGGAGA +
Preference number: 4 (lower is better)
Translates to: CFPHGLREGPFGFRVGVSNSCVC*QCTLGR
Trigger: TCTCCCTAATGTACACTGGCAGCAAACGCAAGAGTT...ACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TACATCATGTTGTTCTCCTTATCTCTCTGCTCCAGCCGGAATCCCAGCATTAAGACCAATCTTTGTATCTaGCAGCTGCAGCAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: YIMLFSLSLCSSRNPSIKTNLCI*QLQQFL
Trigger: GAGGAACTGCTGCAGCTGCCAGATACAAAGATTGGT...CTTAATGCTGGGATTCCGGCTGGAGCAGAGAGATAAGGAGAACAACATGATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp ACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCGTGCAAGGTGATGGGTaGGATGTTGGAGCAGGTATG +
Preference number: 4 (lower is better)
Translates to: TLAKVFCSTYTHSSLTHCVQGDG*DVGAGM
Trigger: CATACCTGCTCCAACATCCCACCCATCACCTTGCAC...GCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CAA 72 bp ATGGATGCTTTCCACATGGTCTCAGAGAAGGGCCATTaGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCT +
Preference number: 4 (lower is better)
Translates to: MDAFHMVSEKGH*DFELESVSKYS
Trigger: AGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCATCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AGTTTGGCTCCAGGTAGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTCACTCTCTCGAATCATaGAGCTACCAATCTTTGTAT +
Preference number: 4 (lower is better)
Translates to: SLAPGRGHSGARKSSSPCHSLES*SYQSLY
Trigger: ATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTG...ACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCTACCTGGAGCCAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp GGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCCACTCTCTCGAATCATaGAGCTACCAATCTTTGTAT +
Preference number: 4 (lower is better)
Translates to: GLREGPFGFRVGVSLQVLHSLES*SYQSLY
Trigger: ATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTG...GAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AGTACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACCCAGGCATTGGAAGGTaGGCCTTGGTGAGATGTAGT +
Preference number: 4 (lower is better)
Translates to: STLAKVFCSTYTHSSLTHPGIGR*ALVRCS
Trigger: ACTACATCTCACCAAGGCTCACCTTCCAATGCCTGG...GTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp CTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAGAGAACACCCATGCTTTGTATCTGGCAGCTaGAGCAGTTCCTCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: LTSIFEIAILKDLREHPCFVSGS*SSSSAL
Trigger: CAAGGCTGAGGAACTGCTGCAGCTGCCAGATACAAA...GCATGGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp ACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCGGCCACACATATCCCTaGAATATAACTTTCCCGGCC +
Preference number: 4 (lower is better)
Translates to: TLAKVFCSTYTHSSLTHCGHTYP*NITFPA
Trigger: GGCCGGGAAAGTTATATTCCAGGGATATGTGTGGCC...GCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp CTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAGAGAACACCCATGCCAGTCAAAGGTCTTCTaGCGCAAGGTGACAGGTGAA +
Preference number: 4 (lower is better)
Translates to: LTSIFEIAILKDLREHPCQSKVF*RKVTGE
Trigger: TTCACCTGTCACCTTGCGCCAGAAGACCTTTGACTG...GCATGGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
3UTR CAA 72 bp CACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTaGGAGTCAGTCTCCAAGTACTCTTGCAAAAGTGTT +
Preference number: 4 (lower is better)
Translates to: HMVSEKGHLDFE*ESVSKYSCKSV
Trigger: AACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp AAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCCCATTTCAGAAGGTGAGCCTTGGTaGGATGTAGTACCAGTTGTT +
Preference number: 4 (lower is better)
Translates to: KVFCSTYTHSSLTHCPISEGEPW*DVVPVV
Trigger: AACAACTGGTACTACATCTCACCAAGGCTCACCTTC...TGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp CTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCAGAGAACACCCATGCCCGAAGGTGGAGATGTaGATTTCATGCTATTCCCCA +
Preference number: 4 (lower is better)
Translates to: LTSIFEIAILKDLREHPCPKVEM*ISCYSP
Trigger: TGGGGAATAGCATGAAATCCACATCTCCACCTTCGG...GCATGGGTGTTCTCTGAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp ACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCCGAAGGTGGAGATGTaGATTTCATGCTATTCCCCA +
Preference number: 4 (lower is better)
Translates to: TLAKVFCSTYTHSSLTHCPKVEM*ISCYSP
Trigger: TGGGGAATAGCATGAAATCCACATCTCCACCTTCGG...GCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp CAGTTCATTGTAACTGTGAAGGTTCCTCCTGTTTCACATTCAGGGTTACATCATGCTAATGTCAGGAGATaGGTAGTCAGTCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: QFIVTVKVPPVSHSGLHHANVRR*VVSQHS
Trigger: GCTGTGCTGACTGACTACCCATCTCCTGACATTAGC...ATGATGTAACCCTGAATGTGAAACAGGAGGAACCTTCACAGTTACAATGAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR GCA 90 bp AGTACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACACAGGTAAGAGGCAATaGTTTCCCGAAGACCATAGC +
Preference number: 4 (lower is better)
Translates to: STLAKVFCSTYTHSSLTHTGKRQ*FPEDHS
Trigger: GCTATGGTCTTCGGGAAAGCATTGCCTCTTACCTGT...GTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR GCA 90 bp ACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCAACTCTTGCGTTTGCTaGCAGTGTACATTAGGGAGA +
Preference number: 4 (lower is better)
Translates to: TLAKVFCSTYTHSSLTHCNSCVC*QCTLGR
Trigger: TCTCCCTAATGTACACTGGCAGCAAACGCAAGAGTT...GCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp TTTGTTTCTCACACACTGACGAGTATCTTTGAAATAGCCATTTTGAAAGACCTCGTGCAAGGTGATGGGTaGGATGTTGGAGCAGGTATG +
Preference number: 4 (lower is better)
Translates to: FVSHTLTSIFEIAILKDLVQGDG*DVGAGM
Trigger: CATACCTGCTCCAACATCCCACCCATCACCTTGCAC...GAGGTCTTTCAAAATGGCTATTTCAAAGATACTCGTCAGTGTGTGAGAAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp AAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCCCATTTCATGTAGTACCAGTTGTTaGGAAGACGGAAGATTCGAT +
Preference number: 4 (lower is better)
Translates to: KVFCSTYTHSSLTHCPISCSTSC*EDGRFD
Trigger: ATCGAATCTTCCGTCTTCCCAACAACTGGTACTACA...TGAAATGGGGCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR TCA 90 bp ACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGCCACTCTCTCGAATCATaGAGCTACCAATCTTTGTAT +
Preference number: 4 (lower is better)
Translates to: TLAKVFCSTYTHSSLTHCHSLES*SYQSLY
Trigger: ATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTG...GCAGTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CCA 90 bp CAGTTCATTGTAACTGTGAAGGTTCCTCCTGTTTCACATTCAGGGTTACATCATTGTAGTACCAGTTGTTaGGAAGACGGAAGATTCGAT +
Preference number: 4 (lower is better)
Translates to: QFIVTVKVPPVSHSGLHHCSTSC*EDGRFD
Trigger: ATCGAATCTTCCGTCTTCCCAACAACTGGTACTACA...ATGATGTAACCCTGAATGTGAAACAGGAGGAACCTTCACAGTTACAATGAACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CCA 90 bp AGTACTCTTGCAAAAGTGTTCTGTTCTACATACACACACAGTTCTTTGACGCACTGTAGTACCAGTTGTTaGGAAGACGGAAGATTCGAT +
Preference number: 4 (lower is better)
Translates to: STLAKVFCSTYTHSSLTHCSTSC*EDGRFD
Trigger: ATCGAATCTTCCGTCTTCCCAACAACTGGTACTACA...GTGCGTCAAAGAACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CAA 72 bp TTTGGATTTCGAGTTGGAGTCAGTCTCCAAGTACTCTaGCAAAAGTGTTCTGTTCTACATACACACACAGTT +
Preference number: 4 (lower is better)
Translates to: FGFRVGVSLQVL*QKCSVLHTHTV
Trigger: AACTGTGTGTGTATGTAGAACAGAACACTTTTGCAAGAGTACTTGGAGACTGACTCCAACTCGAAATCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
3UTR CAA 72 bp AAGTACCCCCAAATACTACTCAAAGTTCCAATCACATaGACCACAACAGAAAACAGCACAGAAGATAGTGAA +
Preference number: 4 (lower is better)
Translates to: KYPQILLKVPIT*TTTENSTEDSE
Trigger: TTCACTATCTTCTGTGCTGTTTTCTGTTGTGGTCAATGTGATTGGAACTTTGAGTAGTATTTGGGGGTACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS CCA 90 bp TGGCGCAAGGTGACAGGTGAACCAGGGCTGGTGCAAGGTGATGGGTaGGATGTTGGAGCAGGTATGTTCTGTGCCAGACAGGGTGTGGTG +
Preference number: 5 (lower is better)
Translates to: WRKVTGEPGLVQGDG*DVGAGMFCARQGVV
Trigger: CACCACACCCTGTCTGGCACAGAACATACCTGCTCCAACATCCCACCCATCACCTTGCACCAGCCCTGGTTCACCTGTCACCTTGCGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS GCA 90 bp CAGTGTACATTAGGGAGAGACTCTTCTTCTTCCGGTCGAAGGAGCTaGTGTCATCCCCTGTCAGGGACAGGTAAGAGGCAATGCTTTCCC +
Preference number: 5 (lower is better)
Translates to: QCTLGRDSSSSGRRS*CHPLSGTGKRQCFP
Trigger: GGGAAAGCATTGCCTCTTACCTGTCCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGAAGAAGAAGAGTCTCTCCCTAATGTACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS GCA 90 bp GATTCGTCCACTCTGAGTGGGTTCTCTGCTCCCTCTGAACCTTCTTaGAATCTGGATACCCTCTTCCAGTCAAAGGTCTTCTGGCGCAAG +
Preference number: 5 (lower is better)
Translates to: DSSTLSGFSAPSEPS*NLDTLFQSKVFWRK
Trigger: CTTGCGCCAGAAGACCTTTGACTGGAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGGAGCAGAGAACCCACTCAGAGTGGACGAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 90 bp CTCTGGCCACACATATCCCTGGAATATAACTTTCCCGGCCAGTGCTaGGAGAAATGGCTTTCCACCAGCCCCCTTCATCAGAAATTACAC +
Preference number: 5 (lower is better)
Translates to: LWPHISLEYNFPGQC*EKWLSTSPLHQKLH
Trigger: GTGTAATTTCTGATGAAGGGGGCTGGTGGAAAGCCATTTCTCTCAGCACTGGCCGGGAAAGTTATATTCCAGGGATATGTGTGGCCAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 90 bp CCACTTCAGAATAATGAGTCACCAGGTCCTCCAGGCATTGGAAGGTaGGCCTTGGTGAGATGTAGTACCAGTTGTTGGGAAGACGGAAGA +
Preference number: 5 (lower is better)
Translates to: PLQNNESPGPPGIGR*ALVRCSTSCWEDGR
Trigger: TCTTCCGTCTTCCCAACAACTGGTACTACATCTCACCAAGGCTCACCTTCCAATGCCTGGAGGACCTGGTGACTCATTATTCTGAAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 90 bp GCTGAAAAGGGATTCGTCCACTCTGAGTGGGTTCTCTGCTCCCTCTaGACCTTCTTGCAATCTGGATACCCTCTTCCAGTCAAAGGTCTT +
Preference number: 5 (lower is better)
Translates to: AEKGFVHSEWVLCSL*TFLQSGYPLPVKGL
Trigger: AAGACCTTTGACTGGAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGGAGCAGAGAACCCACTCAGAGTGGACGAATCCCTTTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS CCA 90 bp TCCTTCAAACAGCCAGCCATGGTACACTCTGGCCACACATATCCCTaGAATATAACTTTCCCGGCCAGTGCTGAGAGAAATGGCTTTCCA +
Preference number: 5 (lower is better)
Translates to: SFKQPAMVHSGHTYP*NITFPASAERNGFP
Trigger: TGGAAAGCCATTTCTCTCAGCACTGGCCGGGAAAGTTATATTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCTGGCTGTTTGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS-3UTR CAA 90 bp TGCTTTCCACATGGTCTCAGAGAAGGGCCATTTGGATTTCGAGTTGGAGTCAGTGTGATGGGTGGGATGTaGGAGCAGGTATGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: CFPHGLREGPFGFRVGVSVMGGM*EQVCSV
Trigger: CACAGAACATACCTGCTCCAACATCCCACCCATCAC...ACTGACTCCAACTCGAAATCCAAATGGCCCTTCTCTGAGACCATGTGGAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS-3UTR CAA 90 bp TCTCACAATCATCTATGGCAGCATTCAGCTTCTCCAGTTCCCCTTTCCCAGAAAGTGATGGGTGGGATGTaGGAGCAGGTATGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: SHNHLWQHSASPVPLSQKVMGGM*EQVCSV
Trigger: CACAGAACATACCTGCTCCAACATCCCACCCATCAC...TTTCTGGGAAAGGGGAACTGGAGAAGCTGAATGCTGCCATAGATGATTGTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
CDS-3UTR CAA 90 bp AGAGGTCATTCTGGAGCTAGGAAGTCATCTTCCCCATGTTCTTTCTCAGATGGAGTGATGGGTGGGATGTaGGAGCAGGTATGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: RGHSGARKSSSPCSFSDGVMGGM*EQVCSV
Trigger: CACAGAACATACCTGCTCCAACATCCCACCCATCAC...TCCATCTGAGAAAGAACATGGGGAAGATGACTTCCTAGCTCCAGAATGACCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168589.8
CDS TCA 90 bp CAGACAGCGAATAGAAACCTTTCTTTGTTTCACTCTCTCGAATCATaGAGCTACCAATCTTTGTATCTGGCAGCTGCAGCAGTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: QTANRNLSLFHSLES*SYQSLYLAAAAVPQ
Trigger: CTGAGGAACTGCTGCAGCTGCCAGATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTGAAACAAAGAAAGGTTTCTATTCGCTGTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS CAA 72 bp GTGAACCAGGGCTGGTGCAAGGTGATGGGTGGGATGTaGGAGCAGGTATGTTCTGTGCCAGACAGGGTGTGG +
Preference number: 6 (lower is better)
Translates to: VNQGWCKVMGGM*EQVCSVPDRVW
Trigger: CCACACCCTGTCTGGCACAGAACATACCTGCTCCAACATCCCACCCATCACCTTGCACCAGCCCTGGTTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS GCA 72 bp TTAGGGAGAGACTCTTCTTCTTCCGGTCGAAGGAGCTaGTGTCATCCCCTGTCAGGGACAGGTAAGAGGCAA +
Preference number: 6 (lower is better)
Translates to: LGRDSSSSGRRS*CHPLSGTGKRQ
Trigger: TTGCCTCTTACCTGTCCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGAAGAAGAAGAGTCTCTCCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 72 bp GGATTCGTCCACTCTGAGTGGGTTCTCTGCTCCCTCTaGACCTTCTTGCAATCTGGATACCCTCTTCCAGTC +
Preference number: 6 (lower is better)
Translates to: GFVHSEWVLCSL*TFLQSGYPLPV
Trigger: GACTGGAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGGAGCAGAGAACCCACTCAGAGTGGACGAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS GCA 72 bp CGAATCATGAAGCTACCAATCTTTGTATCTGGCAGCTaGAGCAGTTCCTCAGCCTTGTCCCTGCCCAGTCCT +
Preference number: 6 (lower is better)
Translates to: RIMKLPIFVSGS*SSSSALSLPSP
Trigger: AGGACTGGGCAGGGACAAGGCTGAGGAACTGCTGCAGCTGCCAGATACAAAGATTGGTAGCTTCATGATTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS CCA 72 bp TGCCCAGTCCTTCAAACAGCCAGCCATGGTACACTCTaGCCACACATATCCCTGGAATATAACTTTCCCGGC +
Preference number: 6 (lower is better)
Translates to: CPVLQTASHGTL*PHISLEYNFPG
Trigger: GCCGGGAAAGTTATATTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCTGGCTGTTTGAAGGACTGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 72 bp CACATATCCCTGGAATATAACTTTCCCGGCCAGTGCTaGGAGAAATGGCTTTCCACCAGCCCCCTTCATCAG +
Preference number: 6 (lower is better)
Translates to: HISLEYNFPGQC*EKWLSTSPLHQ
Trigger: CTGATGAAGGGGGCTGGTGGAAAGCCATTTCTCTCAGCACTGGCCGGGAAAGTTATATTCCAGGGATATGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 72 bp TTGGAGCAGGTATGTTCTGTGCCAGACAGGGTGTGGTaGGCACACAGCATAGACCATCAGCCACTTCAGAAT +
Preference number: 6 (lower is better)
Translates to: LEQVCSVPDRVW*AHSIDHQPLQN
Trigger: ATTCTGAAGTGGCTGATGGTCTATGCTGTGTGCTCACCACACCCTGTCTGGCACAGAACATACCTGCTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS CCA 72 bp CAGCCAGCCATGGTACACTCTGGCCACACATATCCCTaGAATATAACTTTCCCGGCCAGTGCTGAGAGAAAT +
Preference number: 6 (lower is better)
Translates to: QPAMVHSGHTYP*NITFPASAERN
Trigger: ATTTCTCTCAGCACTGGCCGGGAAAGTTATATTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCTGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS GCA 72 bp ACTCTGAGTGGGTTCTCTGCTCCCTCTGAACCTTCTTaGAATCTGGATACCCTCTTCCAGTCAAAGGTCTTC +
Preference number: 6 (lower is better)
Translates to: TLSGFSAPSEPS*NLDTLFQSKVF
Trigger: GAAGACCTTTGACTGGAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGGGAGCAGAGAACCCACTCAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS CCA 72 bp AGAAATTACACGCAGTTTCTCTCCTCTCCGGAATATTaGGGGGCTAATGTCAGGAGATGGGTAGTCAGTCAG +
Preference number: 6 (lower is better)
Translates to: RNYTQFLSSPEY*GANVRRWVVSQ
Trigger: CTGACTGACTACCCATCTCCTGACATTAGCCCCCCAATATTCCGGAGAGGAGAGAAACTGCGTGTAATTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8
CDS TCA 72 bp AATAGAAACCTTTCTTTGTTTCACTCTCTCGAATCATaGAGCTACCAATCTTTGTATCTGGCAGCTGCAGCA +
Preference number: 6 (lower is better)
Translates to: NRNLSLFHSLES*SYQSLYLAAAA
Trigger: TGCTGCAGCTGCCAGATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTGAAACAAAGAAAGGTTTCTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100572.10
ENSMUST00000164163.8
ENSMUST00000168522.2
ENSMUST00000168589.8