Pregenerated sensors for SKP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036309Ensembl transcript IDs: ENSMUST00000037324.12, ENSMUST00000109072.2, ENSMUST00000116595.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTAAGAGAGCCCAGCTGCACTCAAGCTTACCAGCAGCATAGAGGTTaGAAGACACCCACATGGTTAACTTCAAGCTGCCCTATTCCAGTT | + |
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Preference number: 1 (lower is better) Translates to: LREPSCTQAYQQHRG*KTPTWLTSSCPIPV Trigger: AACTGGAATAGGGCAGCTTGAAGTTAACCATGTGGGTGTCTTCCAACCTCTATGCTGCTGGTAAGCTTGAGTGCAGCTGGGCTCTCTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| 3UTR CCA 72 bp | CCCAGCTGCACTCAAGCTTACCAGCAGCATAGAGGTTaGAAGACACCCACATGGTTAACTTCAAGCTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: PSCTQAYQQHRG*KTPTWLTSSCP Trigger: AGGGCAGCTTGAAGTTAACCATGTGGGTGTCTTCCAACCTCTATGCTGCTGGTAAGCTTGAGTGCAGCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| 3UTR GCA 72 bp | AAAACAAGGCCTCAGATCCAATTAAGAGAGCCCAGCTaGACTCAAGCTTACCAGCAGCATAGAGGTTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: KTRPQIQLREPS*TQAYQQHRGWK Trigger: CTTCCAACCTCTATGCTGCTGGTAAGCTTGAGTGCAGCTGGGCTCTCTTAATTGGATCTGAGGCCTTGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| 3UTR CCA 72 bp | GCTTACCAGCAGCATAGAGGTTGGAAGACACCCACATaGTTAACTTCAAGCTGCCCTATTCCAGTTTCCGAT | + |
|
Preference number: 3 (lower is better) Translates to: AYQQHRGWKTPT*LTSSCPIPVSD Trigger: ATCGGAAACTGGAATAGGGCAGCTTGAAGTTAACCATGTGGGTGTCTTCCAACCTCTATGCTGCTGGTAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS-3UTR CCA 90 bp | TACCAGCAGCATAGAGGTTGGAAGACACCCACATGGTTAACTTCAAGCTGCCCTTTCTCTTTGCGTACCTaGGCCTCTTCCTCTTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: YQQHRGWKTPTWLTSSCPFSLRT*ASSSSV Trigger: TACTGAAGAGGAAGAGGCCCAGGTACGCAAAGAGAA...AGGGCAGCTTGAAGTTAACCATGTGGGTGTCTTCCAACCTCTATGCTGCTGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS-3UTR CCA 90 bp | TGCACTCAAGCTTACCAGCAGCATAGAGGTTGGAAGACACCCACATGGTTAACTTTCTCTTTGCGTACCTaGGCCTCTTCCTCTTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: CTQAYQQHRGWKTPTWLTFSLRT*ASSSSV Trigger: TACTGAAGAGGAAGAGGCCCAGGTACGCAAAGAGAA...AGTTAACCATGTGGGTGTCTTCCAACCTCTATGCTGCTGGTAAGCTTGAGTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS-3UTR TCA 90 bp | ATCCATTCCCAAATCTTATATATACTTCAGGTAACAGCCTGCCAAGACAGGAACGTCTTCAAGAGCATCTaGTCCATACAGCTTCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: IHSQILYILQVTACQDRNVFKSI*SIQLLF Trigger: GAAAAGAAGCTGTATGGATCAGATGCTCTTGAAGAC...GTTCCTGTCTTGGCAGGCTGTTACCTGAAGTATATATAAGATTTGGGAATGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116595.3 |
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| CDS-3UTR CAA 90 bp | AGGTCTGATCTGGACTGGAACTACACATGCAGTGAAGACAAGGCGATGTTTGTCCACCATTGGTTCTCTTaGCGTACCTGGGCCTCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: RSDLDWNYTCSEDKAMFVHHWFS*RTWASS Trigger: GGAAGAGGCCCAGGTACGCAAAGAGAACCAATGGTG...GACAAACATCGCCTTGTCTTCACTGCATGTGTAGTTCCAGTCCAGATCAGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS-3UTR CAA 90 bp | CTGATCTGGACTGGAACTACACATGCAGTGAAGACAAGGCGATGTTTGTCTACTCACCATTGGTTCTCTTaGCGTACCTGGGCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LIWTGTTHAVKTRRCLSTHHWFS*RTWASS Trigger: GGAAGAGGCCCAGGTACGCAAAGAGAACCAATGGTG...AGTAGACAAACATCGCCTTGTCTTCACTGCATGTGTAGTTCCAGTCCAGATCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS-3UTR CAA 90 bp | TCAGGTAACAGCCTGCCAAGACAGGAACTGAACCAGGGCAGGAATCTGAAGGCATTCAGGTGTAGACTTTaGAAAGTCTTCAAGAGCATC | + |
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Preference number: 5 (lower is better) Translates to: SGNSLPRQELNQGRNLKAFRCRL*KVFKSI Trigger: GATGCTCTTGAAGACTTTCAAAAGTCTACACCTGAA...TGCCTTCAGATTCCTGCCCTGGTTCAGTTCCTGTCTTGGCAGGCTGTTACCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116595.3 |
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| CDS-3UTR CAA 90 bp | AGGTCTGATCTGGACTGGAACTACACATGCAGTGAAGACAAGGCGATGTTTGTCTCTGTCCGCTTTTCTTaGTTTTCATCATCCTCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: RSDLDWNYTCSEDKAMFVSVRFS*FSSSSG Trigger: TCCTGAGGATGATGAAAACAAAGAAAAGCGGACAGA...GACAAACATCGCCTTGTCTTCACTGCATGTGTAGTTCCAGTCCAGATCAGACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS-3UTR CAA 90 bp | CTGATCTGGACTGGAACTACACATGCAGTGAAGACAAGGCGATGTTTGTCTACTTCTGTCCGCTTTTCTTaGTTTTCATCATCCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LIWTGTTHAVKTRRCLSTSVRFS*FSSSSG Trigger: TCCTGAGGATGATGAAAACAAAGAAAAGCGGACAGA...AGTAGACAAACATCGCCTTGTCTTCACTGCATGTGTAGTTCCAGTCCAGATCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037324.12 ENSMUST00000109072.2 |
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| CDS TCA 72 bp | TTCAGGTGTAGACTTTTGAAAGTCTTCAAGAGCATCTaGTCCATACAGCTTCTTTTCTTCCAGCATGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FRCRLLKVFKSI*SIQLLFFQHGL Trigger: AAGACCATGCTGGAAGAAAAGAAGCTGTATGGATCAGATGCTCTTGAAGACTTTCAAAAGTCTACACCTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116595.3 |
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