RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SKOR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091519

Ensembl transcript IDs: ENSMUST00000166956.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGAGGACGCAGACCCGGTCCCGGACGTCACTCCTTGCTCTGCGGGTaGCGTGGACCCGGCGCTGCAGTCCCCGCCGCTGCCGCCCGGGGG +
Preference number: 5 (lower is better)
Translates to: GGRRPGPGRHSLLCG*RGPGAAVPAAAARG
Trigger: CCCCCGGGCGGCAGCGGCGGGGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCCTCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp GCCTGGCCCGGCGCCGCCTGTGGCTGCGGCCACCGAGAGGCTGGCTaGGGCTGCCGAGAGGCTGGCTGCAGCCACCACGGCAGCTTCCTG +
Preference number: 5 (lower is better)
Translates to: AWPGAACGCGHREAG*GCREAGCSHHGSFL
Trigger: CAGGAAGCTGCCGTGGTGGCTGCAGCCAGCCTCTCGGCAGCCGCAGCCAGCCTCTCGGTGGCCGCAGCCACAGGCGGCGCCGGGCCAGGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 90 bp CTGCGCCTGGCCCGGCGCCGCCTGTGGCTGCGGCCACCGAGAGGCTaGCTGCGGCTGCCGAGAGGCTGGCTGCAGCCACCACGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: LRLARRRLWLRPPRG*LRLPRGWLQPPRQL
Trigger: AAGCTGCCGTGGTGGCTGCAGCCAGCCTCTCGGCAGCCGCAGCCAGCCTCTCGGTGGCCGCAGCCACAGGCGGCGCCGGGCCAGGCGCAG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp TGCTCCGGAGGACGCAGACCCGGTCCCGGACGTCACTCCTTGCTCTaGGGGTGGCGTGGACCCGGCGCTGCAGTCCCCGCCGCTGCCGCC +
Preference number: 5 (lower is better)
Translates to: CSGGRRPGPGRHSLL*GWRGPGAAVPAAAA
Trigger: GGCGGCAGCGGCGGGGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCCTCCGGAGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 90 bp CTTGTGATGGGCGTGAGGTGCGCCCGCCAGCTCAGCCAAGGGTGGTaGCGGCGGTGGCGGGGGTGGAGCCCCCAGCAGGTGCGGGCCCAG +
Preference number: 5 (lower is better)
Translates to: LVMGVRCARQLSQGW*RRWRGWSPQQVRAQ
Trigger: CTGGGCCCGCACCTGCTGGGGGCTCCACCCCCGCCACCGCCGCCACCACCCTTGGCTGAGCTGGCGGGCGCACCTCACGCCCATCACAAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp GAGCCTGCTCCGGAGGACGCAGACCCGGTCCCGGACGTCACTCCTTaGTCTGCGGGTGGCGTGGACCCGGCGCTGCAGTCCCCGCCGCTG +
Preference number: 5 (lower is better)
Translates to: EPAPEDADPVPDVTP*SAGGVDPALQSPPL
Trigger: CAGCGGCGGGGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCCTCCGGAGCAGGCTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp CCGGACGGAAGGCGCTGGAATGGTGGTAGCTGCCGCCGCCCGCCTTaGGCCCTTCCAGGAGGTGCGGGTGATGGGGAGCCGGCACTCGGG +
Preference number: 5 (lower is better)
Translates to: PDGRRWNGGSCRRPP*ALPGGAGDGEPALG
Trigger: CCCGAGTGCCGGCTCCCCATCACCCGCACCTCCTGGAAGGGCGCAAGGCGGGCGGCGGCAGCTACCACCATTCCAGCGCCTTCCGTCCGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp ATCGTCATCGTCGTCGAAGCGCGGCCGCTTGTGATGGGCGTGAGGTaGGCCCGCCAGCTCAGCCAAGGGTGGTGGCGGCGGTGGCGGGGG +
Preference number: 5 (lower is better)
Translates to: IVIVVEARPLVMGVR*ARQLSQGWWRRWRG
Trigger: CCCCCGCCACCGCCGCCACCACCCTTGGCTGAGCTGGCGGGCGCACCTCACGCCCATCACAAGCGGCCGCGCTTCGACGACGATGACGAT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp CGTCCTTGCCGCCCACCGGACGGAAGGCGCTGGAATGGTGGTAGCTaGCGCCGCCCGCCTTGCGCCCTTCCAGGAGGTGCGGGTGATGGG +
Preference number: 5 (lower is better)
Translates to: RPCRPPDGRRWNGGS*RRPPCALPGGAGDG
Trigger: CCCATCACCCGCACCTCCTGGAAGGGCGCAAGGCGGGCGGCGGCAGCTACCACCATTCCAGCGCCTTCCGTCCGGTGGGCGGCAAGGACG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp GGGCACTGGGATGACTGGGTAGCTGCGTGGACCTTTGGTGCCAGCTaGTGCACCAGCCCCCGCACTGGCACCCACGCCCACGCCGGCCAC +
Preference number: 5 (lower is better)
Translates to: GHWDDWVAAWTFGAS*CTSPRTGTHAHAGH
Trigger: GTGGCCGGCGTGGGCGTGGGTGCCAGTGCGGGGGCTGGTGCAGCAGCTGGCACCAAAGGTCCACGCAGCTACCCAGTCATCCCAGTGCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp CCCCGCGTCCTCCTTCTTGTGGCACAAGCCGAAGGCTGCGGCCGCTaGCGGGAAGGTGTAAGGATGCGGGAAGAGGCCCCCGCAGCCCGG +
Preference number: 5 (lower is better)
Translates to: PRVLLLVAQAEGCGR*REGVRMREEAPAAR
Trigger: CCGGGCTGCGGGGGCCTCTTCCCGCATCCTTACACCTTCCCGGCAGCGGCCGCAGCCTTCGGCTTGTGCCACAAGAAGGAGGACGCGGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp CCGCCGACGCCCCGTGCAGCTTGGCCAGGCTTTCTGCGTCGTCCTTaGCGCCCACCGGACGGAAGGCGCTGGAATGGTGGTAGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: PPTPRAAWPGFLRRP*RPPDGRRWNGGSCR
Trigger: GCGGCAGCTACCACCATTCCAGCGCCTTCCGTCCGGTGGGCGGCAAGGACGACGCAGAAAGCCTGGCCAAGCTGCACGGGGCGTCGGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp GTGGGGTGTGCCCGCCGACGCCCCGTGCAGCTTGGCCAGGCTTTCTaGGTCGTCCTTGCCGCCCACCGGACGGAAGGCGCTGGAATGGTG +
Preference number: 5 (lower is better)
Translates to: VGCARRRPVQLGQAF*VVLAAHRTEGAGMV
Trigger: CACCATTCCAGCGCCTTCCGTCCGGTGGGCGGCAAGGACGACGCAGAAAGCCTGGCCAAGCTGCACGGGGCGTCGGCGGGCACACCCCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp GGCTGCGGCCACCGAGAGGCTGGCTGCGGCTGCCGAGAGGCTGGCTaGAGCCACCACGGCAGCTTCCTGGAGGGAATCGTCATCGTCGTC +
Preference number: 5 (lower is better)
Translates to: GCGHREAGCGCREAG*SHHGSFLEGIVIVV
Trigger: GACGACGATGACGATTCCCTCCAGGAAGCTGCCGTGGTGGCTGCAGCCAGCCTCTCGGCAGCCGCAGCCAGCCTCTCGGTGGCCGCAGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp CACTGGGATGACTGGGTAGCTGCGTGGACCTTTGGTGCCAGCTGCTaGACCAGCCCCCGCACTGGCACCCACGCCCACGCCGGCCACGCA +
Preference number: 5 (lower is better)
Translates to: HWDDWVAAWTFGASC*TSPRTGTHAHAGHA
Trigger: TGCGTGGCCGGCGTGGGCGTGGGTGCCAGTGCGGGGGCTGGTGCAGCAGCTGGCACCAAAGGTCCACGCAGCTACCCAGTCATCCCAGTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp GGCCGCTGTCCCCGCGTCCTCCTTCTTGTGGCACAAGCCGAAGGCTaGGGCCGCTGCCGGGAAGGTGTAAGGATGCGGGAAGAGGCCCCC +
Preference number: 5 (lower is better)
Translates to: GRCPRVLLLVAQAEG*GRCREGVRMREEAP
Trigger: GGGGGCCTCTTCCCGCATCCTTACACCTTCCCGGCAGCGGCCGCAGCCTTCGGCTTGTGCCACAAGAAGGAGGACGCGGGGACAGCGGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 90 bp TGGAGGAGTTCAGCGCTAGAGGGAAAGCACCCACGGCGGGCGTCGTaGGGTCCCGACCGCTCCCCTTCTCCGATAGCCCTCGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: WRSSALEGKHPRRAS*GPDRSPSPIALGPG
Trigger: TCCAGGGCCGAGGGCTATCGGAGAAGGGGAGCGGTCGGGACCGCACGACGCCCGCCGTGGGTGCTTTCCCTCTAGCGCTGAACTCCTCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 90 bp GTCGTGCGGTCCCGACCGCTCCCCTTCTCCGATAGCCCTCGGCCCTaGAGGAACCGGCCACCGCCAACCAGGGAGTCTCCTAGAAGGACC +
Preference number: 5 (lower is better)
Translates to: VVRSRPLPFSDSPRP*RNRPPPTRESPRRT
Trigger: GGTCCTTCTAGGAGACTCCCTGGTTGGCGGTGGCCGGTTCCTCCAGGGCCGAGGGCTATCGGAGAAGGGGAGCGGTCGGGACCGCACGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 90 bp CCGAGCCTCCAGAGTCCCCCAGTTTCCCATCCTCTTGTAGCAGCCTaGAGGAGTTCAGCGCTAGAGGGAAAGCACCCACGGCGGGCGTCG +
Preference number: 5 (lower is better)
Translates to: PSLQSPPVSHPLVAA*RSSALEGKHPRRAS
Trigger: CGACGCCCGCCGTGGGTGCTTTCCCTCTAGCGCTGAACTCCTCCAGGCTGCTACAAGAGGATGGGAAACTGGGGGACTCTGGAGGCTCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 90 bp CTCATCTTCAGGATCGCGACCGTCCTCCTCTTCCTCGCCTTCGAGTaGCTTGTGGCCCTCCACGTCCACCTCCTGCTCTTCCTCCTCGTC +
Preference number: 5 (lower is better)
Translates to: LIFRIATVLLFLAFE*LVALHVHLLLFLLV
Trigger: GACGAGGAGGAAGAGCAGGAGGTGGACGTGGAGGGCCACAAGCCACTCGAAGGCGAGGAAGAGGAGGACGGTCGCGATCCTGAAGATGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS TCA 90 bp TTCCTTAGGTTTCTGATTATCTTTGTACGAGGGCTCCTCCTCCAGTaGTGGATGGTGGACAGGGCTGCCTGGCCTGCTGCCCCCACTGCT +
Preference number: 5 (lower is better)
Translates to: FLRFLIIFVRGLLLQ*WMVDRAAWPAAPTA
Trigger: AGCAGTGGGGGCAGCAGGCCAGGCAGCCCTGTCCACCATCCATCACTGGAGGAGGAGCCCTCGTACAAAGATAATCAGAAACCTAAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GGGGAGGTTGGCCCGGAGGGGGCGCTGCCTCGGCGCTaGCACCTGCACCGCCCGGCTCGGCCAGGTCCAGGA +
Preference number: 6 (lower is better)
Translates to: GEVGPEGALPRR*HLHRPARPGPG
Trigger: TCCTGGACCTGGCCGAGCCGGGCGGTGCAGGTGGCAGCGCCGAGGCAGCGCCCCCTCCGGGCCAACCTCCCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp GGCGTGAGGTGCGCCCGCCAGCTCAGCCAAGGGTGGTaGCGGCGGTGGCGGGGGTGGAGCCCCCAGCAGGTG +
Preference number: 6 (lower is better)
Translates to: GVRCARQLSQGW*RRWRGWSPQQV
Trigger: CACCTGCTGGGGGCTCCACCCCCGCCACCGCCGCCACCACCCTTGGCTGAGCTGGCGGGCGCACCTCACGCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp GCCCGGCGCCGCCTGTGGCTGCGGCCACCGAGAGGCTaGCTGCGGCTGCCGAGAGGCTGGCTGCAGCCACCA +
Preference number: 6 (lower is better)
Translates to: ARRRLWLRPPRG*LRLPRGWLQPP
Trigger: TGGTGGCTGCAGCCAGCCTCTCGGCAGCCGCAGCCAGCCTCTCGGTGGCCGCAGCCACAGGCGGCGCCGGGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS TCA 72 bp CCGCCGCCCGCCTTGCGCCCTTCCAGGAGGTGCGGGTaGTGGGGAGCCGGCACTCGGGTGCCCACAGAGCCT +
Preference number: 6 (lower is better)
Translates to: PPPALRPSRRCG*WGAGTRVPTEP
Trigger: AGGCTCTGTGGGCACCCGAGTGCCGGCTCCCCATCACCCGCACCTCCTGGAAGGGCGCAAGGCGGGCGGCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GGACGCAGACCCGGTCCCGGACGTCACTCCTTGCTCTaGGGGTGGCGTGGACCCGGCGCTGCAGTCCCCGCC +
Preference number: 6 (lower is better)
Translates to: GRRPGPGRHSLL*GWRGPGAAVPA
Trigger: GGCGGGGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp AGACCCGGTCCCGGACGTCACTCCTTGCTCTGCGGGTaGCGTGGACCCGGCGCTGCAGTCCCCGCCGCTGCC +
Preference number: 6 (lower is better)
Translates to: RPGPGRHSLLCG*RGPGAAVPAAA
Trigger: GGCAGCGGCGGGGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp CCCAGGGCCTCGGCCGCTGTCCCCGCGTCCTCCTTCTaGTGGCACAAGCCGAAGGCTGCGGCCGCTGCCGGG +
Preference number: 6 (lower is better)
Translates to: PRASAAVPASSF*WHKPKAAAAAG
Trigger: CCCGGCAGCGGCCGCAGCCTTCGGCTTGTGCCACAAGAAGGAGGACGCGGGGACAGCGGCCGAGGCCCTGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GTCGTCGAAGCGCGGCCGCTTGTGATGGGCGTGAGGTaGGCCCGCCAGCTCAGCCAAGGGTGGTGGCGGCGG +
Preference number: 6 (lower is better)
Translates to: VVEARPLVMGVR*ARQLSQGWWRR
Trigger: CCGCCGCCACCACCCTTGGCTGAGCTGGCGGGCGCACCTCACGCCCATCACAAGCGGCCGCGCTTCGACGAC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GCCTGTGGCTGCGGCCACCGAGAGGCTGGCTGCGGCTaGCGAGAGGCTGGCTGCAGCCACCACGGCAGCTTC +
Preference number: 6 (lower is better)
Translates to: ACGCGHREAGCG*REAGCSHHGSF
Trigger: GAAGCTGCCGTGGTGGCTGCAGCCAGCCTCTCGGCAGCCGCAGCCAGCCTCTCGGTGGCCGCAGCCACAGGC
74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GCTGCCGCCCGGGGGCGACTCGAAGAGCGTGTCGCGTaGTCCAGTGCCCCCAGTAGCTGGAGGACCGGAGCC +
Preference number: 6 (lower is better)
Translates to: AAARGRLEERVA*SSAPSSWRTGA
Trigger: GGCTCCGGTCCTCCAGCTACTGGGGGCACTGGAGCACGCGACACGCTCTTCGAGTCGCCCCCGGGCGGCAGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp CCGGAGGACGCAGACCCGGTCCCGGACGTCACTCCTTaGTCTGCGGGTGGCGTGGACCCGGCGCTGCAGTCC +
Preference number: 6 (lower is better)
Translates to: PEDADPVPDVTP*SAGGVDPALQS
Trigger: GGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCCTCCGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp CCAGGAGGTGCGGGTGATGGGGAGCCGGCACTCGGGTaGCCACAGAGCCTGCTCCGGAGGACGCAGACCCGG +
Preference number: 6 (lower is better)
Translates to: PGGAGDGEPALG*PQSLLRRTQTR
Trigger: CCGGGTCTGCGTCCTCCGGAGCAGGCTCTGTGGGCACCCGAGTGCCGGCTCCCCATCACCCGCACCTCCTGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp CGCCCACCGGACGGAAGGCGCTGGAATGGTGGTAGCTaGCGCCGCCCGCCTTGCGCCCTTCCAGGAGGTGCG +
Preference number: 6 (lower is better)
Translates to: RPPDGRRWNGGS*RRPPCALPGGA
Trigger: CGCACCTCCTGGAAGGGCGCAAGGCGGGCGGCGGCAGCTACCACCATTCCAGCGCCTTCCGTCCGGTGGGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GCCCGCCGACGCCCCGTGCAGCTTGGCCAGGCTTTCTaGGTCGTCCTTGCCGCCCACCGGACGGAAGGCGCT +
Preference number: 6 (lower is better)
Translates to: ARRRPVQLGQAF*VVLAAHRTEGA
Trigger: AGCGCCTTCCGTCCGGTGGGCGGCAAGGACGACGCAGAAAGCCTGGCCAAGCTGCACGGGGCGTCGGCGGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp CTGCGTCGTCCTTGCCGCCCACCGGACGGAAGGCGCTaGAATGGTGGTAGCTGCCGCCGCCCGCCTTGCGCC +
Preference number: 6 (lower is better)
Translates to: LRRPCRPPDGRR*NGGSCRRPPCA
Trigger: GGCGCAAGGCGGGCGGCGGCAGCTACCACCATTCCAGCGCCTTCCGTCCGGTGGGCGGCAAGGACGACGCAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 90 bp AGAGCCTGCTCCGGAGGACGCAGACCCGGTCCCGGACGTCACTCCTaGCTCTGCGGGTGGCGTGGACCCGGCGCTGCAGTCCCCGCCGCT +
Preference number: 6 (lower is better)
Translates to: RACSGGRRPGPGRHS*LCGWRGPGAAVPAA
Trigger: AGCGGCGGGGACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCCTCCGGAGCAGGCTCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp AGGCGCTGGAATGGTGGTAGCTGCCGCCGCCCGCCTTaGGCCCTTCCAGGAGGTGCGGGTGATGGGGAGCCG +
Preference number: 6 (lower is better)
Translates to: RRWNGGSCRRPP*ALPGGAGDGEP
Trigger: CGGCTCCCCATCACCCGCACCTCCTGGAAGGGCGCAAGGCGGGCGGCGGCAGCTACCACCATTCCAGCGCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp AGGGCCTCGGCCGCTGTCCCCGCGTCCTCCTTCTTGTaGCACAAGCCGAAGGCTGCGGCCGCTGCCGGGAAG +
Preference number: 6 (lower is better)
Translates to: RASAAVPASSFL*HKPKAAAAAGK
Trigger: CTTCCCGGCAGCGGCCGCAGCCTTCGGCTTGTGCCACAAGAAGGAGGACGCGGGGACAGCGGCCGAGGCCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp TCCGGAGGACGCAGACCCGGTCCCGGACGTCACTCCTaGCTCTGCGGGTGGCGTGGACCCGGCGCTGCAGTC +
Preference number: 6 (lower is better)
Translates to: SGGRRPGPGRHS*LCGWRGPGAAV
Trigger: GACTGCAGCGCCGGGTCCACGCCACCCGCAGAGCAAGGAGTGACGTCCGGGACCGGGTCTGCGTCCTCCGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp GCTGAGTGGGGTGTGCCCGCCGACGCCCCGTGCAGCTaGGCCAGGCTTTCTGCGTCGTCCTTGCCGCCCACC +
Preference number: 6 (lower is better)
Translates to: AEWGVPADAPCS*ARLSASSLPPT
Trigger: GGTGGGCGGCAAGGACGACGCAGAAAGCCTGGCCAAGCTGCACGGGGCGTCGGCGGGCACACCCCACTCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GACTGGGTAGCTGCGTGGACCTTTGGTGCCAGCTGCTaGACCAGCCCCCGCACTGGCACCCACGCCCACGCC +
Preference number: 6 (lower is better)
Translates to: DWVAAWTFGASC*TSPRTGTHAHA
Trigger: GGCGTGGGCGTGGGTGCCAGTGCGGGGGCTGGTGCAGCAGCTGGCACCAAAGGTCCACGCAGCTACCCAGTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp CACCGAGAGGCTGGCTGCGGCTGCCGAGAGGCTGGCTaGAGCCACCACGGCAGCTTCCTGGAGGGAATCGTC +
Preference number: 6 (lower is better)
Translates to: HREAGCGCREAG*SHHGSFLEGIV
Trigger: GACGATTCCCTCCAGGAAGCTGCCGTGGTGGCTGCAGCCAGCCTCTCGGCAGCCGCAGCCAGCCTCTCGGTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp TCAGCGCTAGAGGGAAAGCACCCACGGCGGGCGTCGTaGGGTCCCGACCGCTCCCCTTCTCCGATAGCCCTC +
Preference number: 6 (lower is better)
Translates to: SALEGKHPRRAS*GPDRSPSPIAL
Trigger: GAGGGCTATCGGAGAAGGGGAGCGGTCGGGACCGCACGACGCCCGCCGTGGGTGCTTTCCCTCTAGCGCTGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp GCCGAGAGGCTGGCTGCAGCCACCACGGCAGCTTCCTaGAGGGAATCGTCATCGTCGTCGAAGCGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: AERLAAATTAAS*RESSSSSKRGR
Trigger: GCGGCCGCGCTTCGACGACGATGACGATTCCCTCCAGGAAGCTGCCGTGGTGGCTGCAGCCAGCCTCTCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp GAAGAGCGTGTCGCGTGCTCCAGTGCCCCCAGTAGCTaGAGGACCGGAGCCAGGGCCATTGGCCACCACGGG +
Preference number: 6 (lower is better)
Translates to: EERVACSSAPSS*RTGARAIGHHG
Trigger: CCCGTGGTGGCCAATGGCCCTGGCTCCGGTCCTCCAGCTACTGGGGGCACTGGAGCACGCGACACGCTCTTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp TCCCGACCGCTCCCCTTCTCCGATAGCCCTCGGCCCTaGAGGAACCGGCCACCGCCAACCAGGGAGTCTCCT +
Preference number: 6 (lower is better)
Translates to: SRPLPFSDSPRP*RNRPPPTRESP
Trigger: AGGAGACTCCCTGGTTGGCGGTGGCCGGTTCCTCCAGGGCCGAGGGCTATCGGAGAAGGGGAGCGGTCGGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp GCCCCGTGCAGCTTGGCCAGGCTTTCTGCGTCGTCCTaGCCGCCCACCGGACGGAAGGCGCTGGAATGGTGG +
Preference number: 6 (lower is better)
Translates to: APCSLARLSASS*PPTGRKALEWW
Trigger: CCACCATTCCAGCGCCTTCCGTCCGGTGGGCGGCAAGGACGACGCAGAAAGCCTGGCCAAGCTGCACGGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GATGACTGGGTAGCTGCGTGGACCTTTGGTGCCAGCTaGTGCACCAGCCCCCGCACTGGCACCCACGCCCAC +
Preference number: 6 (lower is better)
Translates to: DDWVAAWTFGAS*CTSPRTGTHAH
Trigger: GTGGGCGTGGGTGCCAGTGCGGGGGCTGGTGCAGCAGCTGGCACCAAAGGTCCACGCAGCTACCCAGTCATC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp CCCCGTGCAGCTTGGCCAGGCTTTCTGCGTCGTCCTTaGCGCCCACCGGACGGAAGGCGCTGGAATGGTGGT +
Preference number: 6 (lower is better)
Translates to: PRAAWPGFLRRP*RPPDGRRWNGG
Trigger: ACCACCATTCCAGCGCCTTCCGTCCGGTGGGCGGCAAGGACGACGCAGAAAGCCTGGCCAAGCTGCACGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp CCCCGCGTCCTCCTTCTTGTGGCACAAGCCGAAGGCTaGGGCCGCTGCCGGGAAGGTGTAAGGATGCGGGAA +
Preference number: 6 (lower is better)
Translates to: PRVLLLVAQAEG*GRCREGVRMRE
Trigger: TTCCCGCATCCTTACACCTTCCCGGCAGCGGCCGCAGCCTTCGGCTTGTGCCACAAGAAGGAGGACGCGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 90 bp CTGGCCCACCTGGTTGGGTTTAAGGTTGGCGTGACCCGGCCGCGGTaGGCTCAATGCGTCGGGCTGGAAGGCGCTCGATGGCGATGCAAG +
Preference number: 6 (lower is better)
Translates to: LAHLVGFKVGVTRPR*AQCVGLEGARWRCK
Trigger: CTTGCATCGCCATCGAGCGCCTTCCAGCCCGACGCATTGAGCCAACCGCGGCCGGGTCACGCCAACCTTAAACCCAACCAGGTGGGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS TCA 72 bp ATCACCTGGCCCACCTGGTTGGGTTTAAGGTTGGCGTaGCCCGGCCGCGGTTGGCTCAATGCGTCGGGCTGG +
Preference number: 6 (lower is better)
Translates to: ITWPTWLGLRLA*PGRGWLNASGW
Trigger: CCAGCCCGACGCATTGAGCCAACCGCGGCCGGGTCACGCCAACCTTAAACCCAACCAGGTGGGCCAGGTGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp GCCAGAACATGCAGAAGGGAGGGTAGAAGGCGTCCTTaGGACCCGCGGGCCAGAAGAGACCCGACAGCCCTG +
Preference number: 6 (lower is better)
Translates to: ARTCRREGRRRP*DPRARRDPTAL
Trigger: CAGGGCTGTCGGGTCTCTTCTGGCCCGCGGGTCGCAAGGACGCCTTCTACCCTCCCTTCTGCATGTTCTGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp CTGGTTGGGTTTAAGGTTGGCGTGACCCGGCCGCGGTaGGCTCAATGCGTCGGGCTGGAAGGCGCTCGATGG +
Preference number: 6 (lower is better)
Translates to: LVGFKVGVTRPR*AQCVGLEGARW
Trigger: CCATCGAGCGCCTTCCAGCCCGACGCATTGAGCCAACCGCGGCCGGGTCACGCCAACCTTAAACCCAACCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp TCGCGACCGTCCTCCTCTTCCTCGCCTTCGAGTGGCTaGTGGCCCTCCACGTCCACCTCCTGCTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: SRPSSSSSPSSG*WPSTSTSCSSS
Trigger: GGAGGAAGAGCAGGAGGTGGACGTGGAGGGCCACAAGCCACTCGAAGGCGAGGAAGAGGAGGACGGTCGCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS GCA 72 bp TTTAAGGTTGGCGTGACCCGGCCGCGGTTGGCTCAATaGGTCGGGCTGGAAGGCGCTCGATGGCGATGCAAG +
Preference number: 6 (lower is better)
Translates to: FKVGVTRPRLAQ*VGLEGARWRCK
Trigger: CTTGCATCGCCATCGAGCGCCTTCCAGCCCGACGCATTGAGCCAACCGCGGCCGGGTCACGCCAACCTTAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp CCTCCTCGTCCTCCTCGTCTTCAGAGCTGTCCTCACTaGGGTAGCTGCAGCTGGTGCCCTCGGGGGACAGAA +
Preference number: 6 (lower is better)
Translates to: PPRPPRLQSCPH*GSCSWCPRGTE
Trigger: TTCTGTCCCCCGAGGGCACCAGCTGCAGCTACCCCAGTGAGGACAGCTCTGAAGACGAGGAGGACGAGGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp AGGATCGCGACCGTCCTCCTCTTCCTCGCCTTCGAGTaGCTTGTGGCCCTCCACGTCCACCTCCTGCTCTTC +
Preference number: 6 (lower is better)
Translates to: RIATVLLFLAFE*LVALHVHLLLF
Trigger: GAAGAGCAGGAGGTGGACGTGGAGGGCCACAAGCCACTCGAAGGCGAGGAAGAGGAGGACGGTCGCGATCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CCA 72 bp CAGAGTCCCCCAGTTTCCCATCCTCTTGTAGCAGCCTaGAGGAGTTCAGCGCTAGAGGGAAAGCACCCACGG +
Preference number: 6 (lower is better)
Translates to: QSPPVSHPLVAA*RSSALEGKHPR
Trigger: CCGTGGGTGCTTTCCCTCTAGCGCTGAACTCCTCCAGGCTGCTACAAGAGGATGGGAAACTGGGGGACTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS TCA 72 bp TTTCTGATTATCTTTGTACGAGGGCTCCTCCTCCAGTaGTGGATGGTGGACAGGGCTGCCTGGCCTGCTGCC +
Preference number: 6 (lower is better)
Translates to: FLIIFVRGLLLQ*WMVDRAAWPAA
Trigger: GGCAGCAGGCCAGGCAGCCCTGTCCACCATCCATCACTGGAGGAGGAGCCCTCGTACAAAGATAATCAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp CAGGAATTGAAGTTAGCCGCGTCTGGCTGTGTGTACTaGGCGTCTGGGGTGCGGTGGGAGTGGAAAATGAAC +
Preference number: 6 (lower is better)
Translates to: QELKLAASGCVY*ASGVRWEWKMN
Trigger: GTTCATTTTCCACTCCCACCGCACCCCAGACGCCAAGTACACACAGCCAGACGCGGCTAACTTCAATTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS TCA 72 bp GTAGATATAATAACTTGGTTGTTTTCCTTAGGTTTCTaGTTATCTTTGTACGAGGGCTCCTCCTCCAGTGAT +
Preference number: 6 (lower is better)
Translates to: VDIITWLFSLGF*LSLYEGSSSSD
Trigger: ATCACTGGAGGAGGAGCCCTCGTACAAAGATAATCAGAAACCTAAGGAAAACAACCAAGTTATTATATCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2
CDS CAA 72 bp GAAGAATCAGAATCTGTGATGAAGAAGCCATGTCCCTaGTTCTTATCTGAGAAGTTGTCATCCTTTGTAGAT +
Preference number: 6 (lower is better)
Translates to: EESESVMKKPCP*FLSEKLSSFVD
Trigger: ATCTACAAAGGATGACAACTTCTCAGATAAGAACAAGGGACATGGCTTCTTCATCACAGATTCTGATTCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166956.2