Pregenerated sensors for SKINT9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049972Ensembl transcript IDs: ENSMUST00000058605.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCATAATAATTAAAACAGAGAGTATCAATTTGAGCAGGGGAACATaGAAAGGGTTGGAGGGAGGGTACCTGGAAGGACCTAGAGAGAGG | + |
|
Preference number: 1 (lower is better) Translates to: IIIIKTESINLSRGT*KGLEGGYLEGPRER Trigger: CCTCTCTCTAGGTCCTTCCAGGTACCCTCCCTCCAACCCTTTCCATGTTCCCCTGCTCAAATTGATACTCTCTGTTTTAATTATTATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| 3UTR-3UTR CCA 90 bp | ATCATAATAATTAAAACAGAGAGTATCAATTTGAGCAGGGGAACATGGAAAGGGTGGAGGGAGGGTACCTaGAAGGACCTAGAGAGAGGA | + |
|
Preference number: 2 (lower is better) Translates to: IIIIKTESINLSRGTWKGWREGT*KDLERG Trigger: TCCTCTCTCTAGGTCCTTCCAGGTACCCTCCCTCCA...CCCTTTCCATGTTCCCCTGCTCAAATTGATACTCTCTGTTTTAATTATTATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR TCA 90 bp | AAAGGGTTGGAGGGAGGGTACCTGGAAGGACCTAGAGAGAGGAAAGAGGAGAAGAGAGAAGGAATGACATaGAGAATCCAGGTAAACAAG | + |
|
Preference number: 4 (lower is better) Translates to: KGLEGGYLEGPRERKEEKREGMT*RIQVNK Trigger: CTTGTTTACCTGGATTCTTCATGTCATTCCTTCTCT...CTTCTCCTCTTTCCTCTCTCTAGGTCCTTCCAGGTACCCTCCCTCCAACCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR CCA 90 bp | GAGAGTATCAATTTGAGCAGGGGAACATGGAAAGGGTTGGAGGGAGGGTACCTGGCTCAGAGTCCTTTGTaGAAAGTTCCATACTTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: ESINLSRGTWKGLEGGYLAQSPL*KVPYLL Trigger: CAACAAGTATGGAACTTTCCACAAAGGACTCTGAGC...CAGGTACCCTCCCTCCAACCCTTTCCATGTTCCCCTGCTCAAATTGATACTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR GCA 90 bp | GAGAGTATCAATTTGAGCAGGGGAACATGGAAAGGGTTGGAGGGAGGGTACCTGAGTAATAGGACCTTTTaGTCTGTTCTTCAGAAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: ESINLSRGTWKGLEGGYLSNRTF*SVLQKN Trigger: ATTCTTCTGAAGAACAGAGCAAAAGGTCCTATTACT...CAGGTACCCTCCCTCCAACCCTTTCCATGTTCCCCTGCTCAAATTGATACTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR GCA 90 bp | AGTATCAATTTGAGCAGGGGAACATGGAAAGGGTTGGAGGGAGGGTACCTGGAAGAATTATATTTCCATTaGTGTCTCTCCATGTCATCT | + |
|
Preference number: 4 (lower is better) Translates to: SINLSRGTWKGLEGGYLEELYFH*CLSMSS Trigger: AGATGACATGGAGAGACAGCAATGGAAATATAATTC...TTCCAGGTACCCTCCCTCCAACCCTTTCCATGTTCCCCTGCTCAAATTGATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR TCA 90 bp | ATCATAATAATTAAAACAGAGAGTATCAATTTGAGCAGGGGAACATGGAAAGGGTCTGATCTCATAGCTTaGGTGAGTACTGTGTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: IIIIKTESINLSRGTWKGSDLIA*VSTVFC Trigger: ACAGAACACAGTACTCACTCAAGCTATGAGATCAGA...CCCTTTCCATGTTCCCCTGCTCAAATTGATACTCTCTGTTTTAATTATTATGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR CAA 90 bp | TGGAAAGGGTTGGAGGGAGGGTACCTGGAAGGACCTAGAGAGAGGAAAGAGGAGTTTGCTCAGAGTCCTTaGTGGAAAGTTCCATACTTG | + |
|
Preference number: 5 (lower is better) Translates to: WKGLEGGYLEGPRERKEEFAQSP*WKVPYL Trigger: CAAGTATGGAACTTTCCACAAAGGACTCTGAGCAAA...CTCCTCTTTCCTCTCTCTAGGTCCTTCCAGGTACCCTCCCTCCAACCCTTTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR CAA 90 bp | GGAAAGGGTTGGAGGGAGGGTACCTGGAAGGACCTAGAGAGAGGAAAGAGGAGAAGATTTAGAACTATTTaGCTCAGAGTCCTTTGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: GKGWREGTWKDLERGKRRRFRTI*LRVLCG Trigger: TCCACAAAGGACTCTGAGCAAAATAGTTCTAAATCT...TCTCCTCTTTCCTCTCTCTAGGTCCTTCCAGGTACCCTCCCTCCAACCCTTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS TCA 90 bp | AAGGACATGAAAATTTGTTTGACATCAATGACATATTCTCCGATTTaGACAGGGCATCTGGTAGGACAATACTTCTCTTTTTCTCCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: KDMKICLTSMTYSPI*TGHLVGQYFSFSPD Trigger: ATCAGGAGAAAAAGAGAAGTATTGTCCTACCAGATGCCCTGTTCAAATCGGAGAATATGTCATTGATGTCAAACAAATTTTCATGTCCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS TCA 90 bp | TTCAGAAGAATGCTGCTCTTCAAATACAATAATCCGTCTCTATCCTaGGAGTTAAATGCAGTTGAATGTGGAATTATATTTCCATTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: FRRMLLFKYNNPSLS*ELNAVECGIIFPLL Trigger: CAGCAATGGAAATATAATTCCACATTCAACTGCATTTAACTCTCAGGATAGAGACGGATTATTGTATTTGAAGAGCAGCATTCTTCTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS-3UTR CAA 90 bp | ATCATAATAATTAAAACAGAGAGTATCAATTTGAGCAGGGGAACATGGAAAGGGCACGTCATAATTTTCTaGGGAGTCATCAGATTTAGA | + |
|
Preference number: 5 (lower is better) Translates to: IIIIKTESINLSRGTWKGHVIIF*GVIRFR Trigger: TCTAAATCTGATGACTCCCAAGAAAATTATGACGTG...CCCTTTCCATGTTCCCCTGCTCAAATTGATACTCTCTGTTTTAATTATTATGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS CAA 72 bp | TTTGCTCAGAGTCCTTTGTGGAAAGTTCCATACTTGTaGGAGGTAAGGAAGACACCTGACCATAACAGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: FAQSPLWKVPYL*EVRKTPDHNSS Trigger: TGAACTGTTATGGTCAGGTGTCTTCCTTACCTCCAACAAGTATGGAACTTTCCACAAAGGACTCTGAGCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS CAA 72 bp | GAAAATTTGTTTGACATCAATGACATATTCTCCGATTaGAACAGGGCATCTGGTAGGACAATACTTCTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: ENLFDINDIFSD*NRASGRTILLF Trigger: AAAGAGAAGTATTGTCCTACCAGATGCCCTGTTCAAATCGGAGAATATGTCATTGATGTCAAACAAATTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS TCA 72 bp | AAAATTTGTTTGACATCAATGACATATTCTCCGATTTaGACAGGGCATCTGGTAGGACAATACTTCTCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: KICLTSMTYSPI*TGHLVGQYFSF Trigger: AAAAGAGAAGTATTGTCCTACCAGATGCCCTGTTCAAATCGGAGAATATGTCATTGATGTCAAACAAATTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||
| CDS CCA 72 bp | GATTATGCATATGTTCCACAGCCAATTAGTATACAATaGATATGTATCGTCCAAAAGAAAAGCTCTACTTCT | + |
|
Preference number: 6 (lower is better) Translates to: DYAYVPQPISIQ*ICIVQKKSSTS Trigger: AGAAGTAGAGCTTTTCTTTTGGACGATACATATCCATTGTATACTAATTGGCTGTGGAACATATGCATAATC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058605.3 |
||