Pregenerated sensors for SKINT8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078599Ensembl transcript IDs: ENSMUST00000106572.8, ENSMUST00000165046.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATCACACTGTGTGGTaGGATCACCTGGCAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SCEMPSKAQVLLVVMKLLHHTVW*DHLAAE Trigger: CTCAGCTGCCAGGTGATCCCACCACACAGTGTGATG...CAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR GCA 90 bp | TCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGTTCGGAGGGACACTTTaGCTTCTCCAATGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SCEMPSKAQVLLVVMKLLFGGTL*LLQWPP Trigger: AGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAA...CAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACAGCTGAGCTCAGCCTaGCCTCCTACTCTAGCTAAC | + |
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Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKQLSSA*PPTLAN Trigger: GTTAGCTAGAGTAGGAGGCCAGGCTGAGCTCAGCTG...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATTCTCTCCACTCCATTTaGGGCCTTGGGAACCACCCT | + |
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Preference number: 4 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHSLHSI*GLGNHP Trigger: AGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGA...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR TCA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATTCAGCATCAGGGGCCTaGACATGTATCTCTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHSASGA*TCISVS Trigger: GGAGACAGAGATACATGTTCAGGCCCCTGATGCTGA...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR GCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACAGCGTACCTCCATATaGATCACACTGTGTGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKQRTSI*ITLCGG Trigger: CCCACCACACAGTGTGATGCATATGGAGGTACGCTG...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCCATTTGGGGCCTTaGGAACCACCCTCCTGTATT | + |
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Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKLHLGP*EPPSCI Trigger: AATACAGGAGGGTGGTTCCCAAGGCCCCAAATGGAG...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAAGGTGTCTTGTGGGAGTaGTTACCCTCAGTTTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKGVLWE*LPSVSL Trigger: CAGAGAAACTGAGGGTAACCACTCCCACAAGACACC...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR TCA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATCGTGTGACATGTTTGTaGGGAGAAGGGTCATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHRVTCL*GEGSSS Trigger: TGAAGATGACCCTTCTCCTCACAAACATGTCACACG...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | GAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATAACCTTTGCCTTCTCCAATaGCCTCCTTCACAAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: EMPSKAQVLLVVMKLLHNLCLLQ*PPSQTL Trigger: CAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAG...GTTATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR TCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAATGGAAATACAGCAAATaGTGCTGCCGTGTGACATGT | + |
|
Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKWKYSK*CCRVTC Trigger: ACATGTCACACGGCAGCATCATTTGCTGTATTTCCA...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR TCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAATTACCTCTGTACCGGTaGGGTAAATACACAGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKLPLYR*GKYTAK Trigger: CTTTGCTGTGTATTTACCTCACCGGTACAGAGGTAA...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR GCA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATGAAGTGTTGCCCCTTTaGTATCTCTCCACTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHEVLPL*YLSTPF Trigger: AAATGGAGTGGAGAGATAGCAAAGGGGCAACACTTC...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR GCA 90 bp | TCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGGAAGACGCCATCACTTaGAGAAAAAGAAAGTACACA | + |
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Preference number: 4 (lower is better) Translates to: SCEMPSKAQVLLVVMKLLEDAIT*RKRKYT Trigger: TGTGTACTTTCTTTTTCTGCAAGTGATGGCGTCTTC...CAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR TCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAAGCCACTATCATTAAATaGACATTGGTAAGGTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKATIIK*TLVRSI Trigger: GATGGACCTTACCAATGTTCATTTAATGATAGTGGC...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR TCA 90 bp | TCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGTTAATGAAAGCACACTaGAAGGAAAAATTCCTACCC | + |
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Preference number: 4 (lower is better) Translates to: SCEMPSKAQVLLVVMKLLLMKAH*KEKFLP Trigger: GGGTAGGAATTTTTCCTTTCAGTGTGCTTTCATTAA...CAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR GCA 90 bp | GAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATAACAAACTCTGTACGATTTaGATATTCAGGAGCAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EMPSKAQVLLVVMKLLHNKLCTI*IFRSSF Trigger: GAAGCTGCTCCTGAATATGCAAATCGTACAGAGTTT...GTTATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATAGGGTCATCTTCATGTaGAAAAATCTTGCTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHRVIFM*KNLASS Trigger: GGATGAAGCAAGATTTTTCCACATGAAGATGACCCT...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CCA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATAAAGGAGTTGATGAATaGCAGAACTCCAAAGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHKGVDE*QNSKEN Trigger: ATTCTCTTTGGAGTTCTGCCATTCATCAACTCCTTT...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR GCA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAAAGAATGATACTTGTTTaGTTCTCTTCACCTGTTACA | + |
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Preference number: 4 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKRMILV*FSSPVT Trigger: TGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCT...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS CCA 90 bp | TGGAAGTGTTGCCCCTTTGCTATCTCTCCACTCCATTTGGGGCCTTaGGAACCACCCTCCTGTATTACATTCCACCATGACTCCATCAGC | + |
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Preference number: 5 (lower is better) Translates to: WKCCPFAISPLHLGP*EPPSCITFHHDSIS Trigger: GCTGATGGAGTCATGGTGGAATGTAATACAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGCAAAGGGGCAACACTTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CCA 90 bp | AATGAGTGTGGAAGTGTTGCCCCTTTGCTATCTCTCCACTCCATTTaGGGCCTTGGGAACCACCCTCCTGTATTACATTCCACCATGACT | + |
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Preference number: 5 (lower is better) Translates to: NECGSVAPLLSLHSI*GLGNHPPVLHSTMT Trigger: AGTCATGGTGGAATGTAATACAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGCAAAGGGGCAACACTTCCACACTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS-3UTR CAA 90 bp | TCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGATCTCTCCACTCCATTaGGGGCCTTGGGAACCACCC | + |
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Preference number: 5 (lower is better) Translates to: SCEMPSKAQVLLVVMKLLISPLH*GPWEPP Trigger: GGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGAT...CAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CAA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAAATTCGGAGGGACACTTaGCCTTCTCCAATGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKIRRDT*PSPMAS Trigger: GGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAAT...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS GCA 90 bp | ATCAGCATCAGGGGCCTGAACATGTATCTCTGTCTCCAATCCAACTaGTGTCACGTTGAGGTTCATGATAGCCACATCAATAAAGCCACT | + |
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Preference number: 5 (lower is better) Translates to: ISIRGLNMYLCLQSN*CHVEVHDSHINKAT Trigger: AGTGGCTTTATTGATGTGGCTATCATGAACCTCAACGTGACAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCCCCTGATGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CCA 90 bp | TCTTCATATAGGGTTGAGGCTTCACGGGCTTTTCCCAGTCCCAGTTaGCTATCCATGATGTCATCTTTGTTCTTCTCCCATTTAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: SSYRVEASRAFPSPS*LSMMSSLFFSHLAR Trigger: TCTGGCTAAATGGGAGAAGAACAAAGATGACATCATGGATAGCCAACTGGGACTGGGAAAAGCCCGTGAAGCCTCAACCCTATATGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165046.2 |
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| CDS-3UTR CAA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAAGGAAGTGTTGCCCCTTaGCTATCTCTCCACTCCATT | + |
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Preference number: 5 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKGSVAP*LSLHSI Trigger: AATGGAGTGGAGAGATAGCAAAGGGGCAACACTTCC...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS TCA 90 bp | TACACAGCAAAGAGTACTCCAGAACAGACTAAGAAATGCACTATTTaGACAGGCCAGGAGGTCACCACAGGAAGACATTTGGATAGGCAT | + |
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Preference number: 5 (lower is better) Translates to: YTAKSTPEQTKKCTI*TGQEVTTGRHLDRH Trigger: ATGCCTATCCAAATGTCTTCCTGTGGTGACCTCCTGGCCTGTTCAAATAGTGCATTTCTTAGTCTGTTCTGGAGTACTCTTTGCTGTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS-3UTR CAA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAAACCACAGGAAGACATTaGGATAGGCATCCAGATGCA | + |
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Preference number: 5 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKTTGRH*DRHPDA Trigger: TGCATCTGGATGCCTATCCAAATGTCTTCCTGTGGT...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS TCA 90 bp | TTCACCTGTTACAGGGTTGGAAATACAGCAAATGATGCTGCCGTGTaGCATGTTTGTGAGGAGAAGGGTCATCTTCATGTGGAAAAATCT | + |
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Preference number: 5 (lower is better) Translates to: FTCYRVGNTANDAAV*HVCEEKGHLHVEKS Trigger: AGATTTTTCCACATGAAGATGACCCTTCTCCTCACAAACATGTCACACGGCAGCATCATTTGCTGTATTTCCAACCCTGTAACAGGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS-3UTR CAA 90 bp | TCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGTCACCTGTTACAGGGTaGGAAATACAGCAAATGATG | + |
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Preference number: 5 (lower is better) Translates to: SCEMPSKAQVLLVVMKLLSPVTG*EIQQMM Trigger: CATCATTTGCTGTATTTCCAACCCTGTAACAGGTGA...CAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS-3UTR CAA 90 bp | AAATGGTCCTGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCCTGAAAAAGGAGTaGATGAATGGCAGAACTCCA | + |
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Preference number: 5 (lower is better) Translates to: KWSCEMPSKAQVLLVVMKLLKKE*MNGRTP Trigger: TGGAGTTCTGCCATTCATCAACTCCTTTTTCAGGAG...TTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACAGGACCATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS CCA 90 bp | AAATGTTTATATTATAAATTCGGAGGGACACTTTGCCTTCTCCAATaGCCTCCTTCACAAACTCTGTACGATTTGCATATTCAGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: KCLYYKFGGTLCLLQ*PPSQTLYDLHIQEQ Trigger: CTGCTCCTGAATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTTATAATATAAACATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS-3UTR CAA 90 bp | TGTGAGATGCCATCAAAAGCACAGGTTCTCCTAGTAGTGATGAAACTCTTGCATTCATGTGGAAAAATCTaGCTTCATCCTGTGAATATG | + |
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Preference number: 5 (lower is better) Translates to: CEMPSKAQVLLVVMKLLHSCGKI*LHPVNM Trigger: CATATTCACAGGATGAAGCAAGATTTTTCCACATGA...ATGCAAGAGTTTCATCACTACTAGGAGAACCTGTGCTTTTGATGGCATCTCACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106572.8 |
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| CDS GCA 72 bp | TGGGAATGGCCACTCCTGAACCAGCGTACCTCCATATaGATCACACTGTGTGGTGGGATCACCTGGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: WEWPLLNQRTSI*ITLCGGITWQL Trigger: CAGCTGCCAGGTGATCCCACCACACAGTGTGATGCATATGGAGGTACGCTGGTTCAGGAGTGGCCATTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CCA 72 bp | GGAAGTGTTGCCCCTTTGCTATCTCTCCACTCCATTTaGGGCCTTGGGAACCACCCTCCTGTATTACATTCC | + |
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Preference number: 6 (lower is better) Translates to: GSVAPLLSLHSI*GLGNHPPVLHS Trigger: GGAATGTAATACAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGCAAAGGGGCAACACTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS TCA 72 bp | CTCTGTATAGGTAAACAGGTTGGGAATGGCCACTCCTaGACCAGCGTACCTCCATATGCATCACACTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: LCIGKQVGNGHS*TSVPPYASHCV Trigger: CACACAGTGTGATGCATATGGAGGTACGCTGGTTCAGGAGTGGCCATTCCCAACCTGTTTACCTATACAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CAA 72 bp | GCTCCCAGCTTTTTCTTGATTGTTCTTCATATAGGGTaGAGGCTTCACGGGCTTTTCCCAGTCCCAGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: APSFFLIVLHIG*RLHGLFPVPVG Trigger: GCCAACTGGGACTGGGAAAAGCCCGTGAAGCCTCAACCCTATATGAAGAACAATCAAGAAAAAGCTGGGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165046.2 |
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| CDS TCA 72 bp | TTACATTCCACCATGACTCCATCAGCATCAGGGGCCTaGACATGTATCTCTGTCTCCAATCCAACTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LHSTMTPSASGA*TCISVSNPTAV Trigger: GACAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCCCCTGATGCTGATGGAGTCATGGTGGAATGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS TCA 72 bp | CAGGTGTCTTGTGGGAGTGGTTACCCTCAGTTTCTCTaGAGACGCCATCACTTGCAGAAAAAGAAAGTACAC | + |
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Preference number: 6 (lower is better) Translates to: QVSCGSGYPQFL*RRHHLQKKKVH Trigger: GTGTACTTTCTTTTTCTGCAAGTGATGGCGTCTTCAGAGAAACTGAGGGTAACCACTCCCACAAGACACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CAA 90 bp | ACACTTTGCCTTCTCCAATGGCCTCCTTCACAAACTCTGTACGATTaGCATATTCAGGAGCAGCTTCTTCACTCATTTTATGGCCACCTC | + |
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Preference number: 6 (lower is better) Translates to: TLCLLQWPPSQTLYD*HIQEQLLHSFYGHL Trigger: GAGGTGGCCATAAAATGAGTGAAGAAGCTGCTCCTGAATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS TCA 72 bp | TACAGGGTTGGAAATACAGCAAATGATGCTGCCGTGTaGCATGTTTGTGAGGAGAAGGGTCATCTTCATGTG | + |
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Preference number: 6 (lower is better) Translates to: YRVGNTANDAAV*HVCEEKGHLHV Trigger: CACATGAAGATGACCCTTCTCCTCACAAACATGTCACACGGCAGCATCATTTGCTGTATTTCCAACCCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CAA 72 bp | TTTCCCAGTCCCAGTTGGCTATCCATGATGTCATCTTaGTTCTTCTCCCATTTAGCCAGACATGTGGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: FPSPSWLSMMSS*FFSHLARHVGE Trigger: TTCACCCACATGTCTGGCTAAATGGGAGAAGAACAAAGATGACATCATGGATAGCCAACTGGGACTGGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165046.2 |
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| CDS CAA 90 bp | TCACGGGCTTTTCCCAGTCCCAGTTGGCTATCCATGATGTCATCTTaGTTCTTCTCCCATTTAGCCAGACATGTGGGTGAAAGTTTTATT | + |
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Preference number: 6 (lower is better) Translates to: SRAFPSPSWLSMMSS*FFSHLARHVGESFI Trigger: AATAAAACTTTCACCCACATGTCTGGCTAAATGGGAGAAGAACAAAGATGACATCATGGATAGCCAACTGGGACTGGGAAAAGCCCGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165046.2 |
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| CDS CAA 72 bp | ACATGTATCTCTGTCTCCAATCCAACTGCTGTCACGTaGAGGTTCATGATAGCCACATCAATAAAGCCACTA | + |
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Preference number: 6 (lower is better) Translates to: TCISVSNPTAVT*RFMIATSIKPL Trigger: TAGTGGCTTTATTGATGTGGCTATCATGAACCTCAACGTGACAGCAGTTGGATTGGAGACAGAGATACATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CAA 72 bp | ATGATACTTGTTTGCTTCTCTTCACCTGTTACAGGGTaGGAAATACAGCAAATGATGCTGCCGTGTGACATG | + |
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Preference number: 6 (lower is better) Translates to: MILVCFSSPVTG*EIQQMMLPCDM Trigger: CATGTCACACGGCAGCATCATTTGCTGTATTTCCAACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CAA 90 bp | TTTGCTAGAATGATACTTGTTTGCTTCTCTTCACCTGTTACAGGGTaGGAAATACAGCAAATGATGCTGCCGTGTGACATGTTTGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: FARMILVCFSSPVTG*EIQQMMLPCDMFVR Trigger: CCTCACAAACATGTCACACGGCAGCATCATTTGCTGTATTTCCAACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCTAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS GCA 72 bp | TTCTCCAATGGCCTCCTTCACAAACTCTGTACGATTTaGATATTCAGGAGCAGCTTCTTCACTCATTTTATG | + |
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Preference number: 6 (lower is better) Translates to: FSNGLLHKLCTI*IFRSSFFTHFM Trigger: CATAAAATGAGTGAAGAAGCTGCTCCTGAATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS GCA 72 bp | CCAAAATGTTTATATTATAAATTCGGAGGGACACTTTaGCTTCTCCAATGGCCTCCTTCACAAACTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: PKCLYYKFGGTL*LLQWPPSQTLY Trigger: GTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTTATAATATAAACATTTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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| CDS CCA 72 bp | TATTATAAATTCGGAGGGACACTTTGCCTTCTCCAATaGCCTCCTTCACAAACTCTGTACGATTTGCATATT | + |
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Preference number: 6 (lower is better) Translates to: YYKFGGTLCLLQ*PPSQTLYDLHI Trigger: AATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTTATAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106572.8 ENSMUST00000165046.2 |
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