Pregenerated sensors for SKINT7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049214Ensembl transcript IDs: ENSMUST00000055014.11, ENSMUST00000106568.8, ENSMUST00000163281.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGTTGGCAACAGGCACACGGGCACAATGCCACATACCTTTCATCGCAGCACTCTCTCATCATACCACATaGCAATACCTGTCTTACTTA | + |
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Preference number: 2 (lower is better) Translates to: KLATGTRAQCHIPFIAALSHHTT*QYLSYL Trigger: TAAGTAAGACAGGTATTGTCATGTGGTATGATGAGA...GAGTGCTGCGATGAAAGGTATGTGGCATTGTGCCCGTGTGCCTGTTGCCAACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR GCA 90 bp | AGTTGGCAACAGGCACACGGGCACAATGCCACATACCTTTCATCGCAGCACTCTTATGATTTTAATGAGTaGGGAAGTGTTGCCCCCTTA | + |
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Preference number: 4 (lower is better) Translates to: SWQQAHGHNATYLSSQHSYDFNE*GSVAPL Trigger: TAAGGGGGCAACACTTCCGCACTCATTAAAATCATA...AGAGTGCTGCGATGAAAGGTATGTGGCATTGTGCCCGTGTGCCTGTTGCCAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR TCA 90 bp | AAACAAACAAACAAAGCCATACAAGTTGGCAACAGGCACACGGGCACAATGCCATACCCTCAGTTTCTCTaGAGATACTACCACTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: KQTNKAIQVGNRHTGTMPYPQFL*RYYHLQ Trigger: CTGCAAGTGGTAGTATCTTCAGAGAAACTGAGGGTA...TGGCATTGTGCCCGTGTGCCTGTTGCCAACTTGTATGGCTTTGTTTGTTTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR TCA 90 bp | AACAAACAAAGCCATACAAGTTGGCAACAGGCACACGGGCACAATGCCACATACCATGTGACATGTTTGTaGGGAGAAGAGTCATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: NKQSHTSWQQAHGHNATYHVTCL*GEESSS Trigger: TGAAGATGACTCTTCTCCTCACAAACATGTCACATG...GTATGTGGCATTGTGCCCGTGTGCCTGTTGCCAACTTGTATGGCTTTGTTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR GCA 90 bp | AGTTGGCAACAGGCACACGGGCACAATGCCACATACCTTTCATCGCAGCACTCTGAAGATACTACCACTTaGAGAAAAAGAAAGTACACA | + |
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Preference number: 4 (lower is better) Translates to: SWQQAHGHNATYLSSQHSEDTTT*RKRKYT Trigger: TGTGTACTTTCTTTTTCTGCAAGTGGTAGTATCTTC...AGAGTGCTGCGATGAAAGGTATGTGGCATTGTGCCCGTGTGCCTGTTGCCAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR TCA 90 bp | GGAAAATGGTCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGTGATGGCCACTACCATTAAATaGACATTGGTAAGGTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: GKWSCEMSSKAQVLLIVMATTIK*TLVRSI Trigger: GATGGACCTTACCAATGTTCATTTAATGGTAGTGGC...CATCACTATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGACCATTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS-3UTR TCA 90 bp | TCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGTGATGAAATACTCATACCCTCAGTTTCTCTaGAGATACTACCACTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SCEMSSKAQVLLIVMKYSYPQFL*RYYHLQ Trigger: CTGCAAGTGGTAGTATCTTCAGAGAAACTGAGGGTA...TGAGTATTTCATCACTATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS-3UTR TCA 90 bp | CTGAAACTCTCATCATACCACATGACAATACCTGTCTTACTTAAAGAACTCCATGCCACTACCATTAAATaGACATTGGTAAGGTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: LKLSSYHMTIPVLLKELHATTIK*TLVRSI Trigger: GATGGACCTTACCAATGTTCATTTAATGGTAGTGGC...ATGGAGTTCTTTAAGTAAGACAGGTATTGTCATGTGGTATGATGAGAGTTTCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR GCA 90 bp | AATACTGGAAAATGGTCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATATATGATTTTAATGAGTaGGGAAGTGTTGCCCCCTTA | + |
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Preference number: 4 (lower is better) Translates to: NTGKWSCEMSSKAQVLLIYDFNE*GSVAPL Trigger: TAAGGGGGCAACACTTCCGCACTCATTAAAATCATA...TATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGACCATTTTCCAGTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS-3UTR TCA 90 bp | AGAATGTCATTGTCTGCTGGTCTTCTGAAACTCTCATCATACCACATGACAATAACTCACTTGCTAGAATaGTACTTGTTTGCTTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RMSLSAGLLKLSSYHMTITHLLE*YLFASL Trigger: AAGAGAAGCAAACAAGTATCATTCTAGCAAGTGAGT...TATTGTCATGTGGTATGATGAGAGTTTCAGAAGACCAGCAGACAATGACATTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR CCA 90 bp | TCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGTGATGAAATACTCAGCATTATCCATACAATaGAAGCTAAACTTTCCATCC | + |
|
Preference number: 4 (lower is better) Translates to: SCEMSSKAQVLLIVMKYSALSIQ*KLNFPS Trigger: GGATGGAAAGTTTAGCTTCCATTGTATGGATAATGC...TGAGTATTTCATCACTATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS-3UTR GCA 90 bp | TCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGTGATGAAATACTCAGAAGATACTACCACTTaGAGAAAAAGAAAGTACACA | + |
|
Preference number: 4 (lower is better) Translates to: SCEMSSKAQVLLIVMKYSEDTTT*RKRKYT Trigger: TGTGTACTTTCTTTTTCTGCAAGTGGTAGTATCTTC...TGAGTATTTCATCACTATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS CCA 90 bp | GCCACTCCTGAACCAGCGTACCTCCATATGCATCACACTGTGTGGTaGGATCACCTGGCAGCTGAGCTCAGCCTGGCCTCCTACTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: ATPEPAYLHMHHTVW*DHLAAELSLASYSS Trigger: GCTAGAGTAGGAGGCCAGGCTGAGCTCAGCTGCCAGGTGATCCCACCACACAGTGTGATGCATATGGAGGTACGCTGGTTCAGGAGTGGC 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CCA 90 bp | ATGGCCACTCCTGAACCAGCGTACCTCCATATGCATCACACTGTGTaGTGGGATCACCTGGCAGCTGAGCTCAGCCTGGCCTCCTACTCT | + |
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Preference number: 5 (lower is better) Translates to: MATPEPAYLHMHHTV*WDHLAAELSLASYS Trigger: AGAGTAGGAGGCCAGGCTGAGCTCAGCTGCCAGGTGATCCCACCACACAGTGTGATGCATATGGAGGTACGCTGGTTCAGGAGTGGCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CCA 90 bp | AACCAGCGTACCTCCATATGCATCACACTGTGTGGTGGGATCACCTaGCAGCTGAGCTCAGCCTGGCCTCCTACTCTAGCTAACAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: NQRTSICITLCGGIT*QLSSAWPPTLANRC Trigger: ACACCTGTTAGCTAGAGTAGGAGGCCAGGCTGAGCTCAGCTGCCAGGTGATCCCACCACACAGTGTGATGCATATGGAGGTACGCTGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS TCA 90 bp | CCATTTGGGGCCTTGGGAACCACCCTCCTGAATTACACTCCACCATaGCTCCATCAGCATCAGGAGCCTGAACATGTATCTCTGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PFGALGTTLLNYTPP*LHQHQEPEHVSLSP Trigger: TGGAGACAGAGATACATGTTCAGGCTCCTGATGCTGATGGAGTCATGGTGGAGTGTAATTCAGGAGGGTGGTTCCCAAGGCCCCAAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CCA 90 bp | AATGAGTGCGGAAGTGTTGCCCCCTTACTATCTCTCCACTCCATTTaGGGCCTTGGGAACCACCCTCCTGAATTACACTCCACCATGACT | + |
|
Preference number: 5 (lower is better) Translates to: NECGSVAPLLSLHSI*GLGNHPPELHSTMT Trigger: AGTCATGGTGGAGTGTAATTCAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGTAAGGGGGCAACACTTCCGCACTCATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS-3UTR CAA 90 bp | GGAAAATGGTCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGTGATGACTCCATTTGGGGCCTaGGGAACCACCCTCCTGAAT | + |
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Preference number: 5 (lower is better) Translates to: GKWSCEMSSKAQVLLIVMTPFGA*GTTLLN Trigger: ATTCAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGT...CATCACTATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGACCATTTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS GCA 90 bp | CACTTTGCCTTCTCCAATGGCCTCCTTCACAAACTCTGTACGATTTaGATATTCAGGAGCAGCTTCTTCACTCATTTTATGGCCACCTCT | + |
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Preference number: 5 (lower is better) Translates to: HFAFSNGLLHKLCTI*IFRSSFFTHFMATS Trigger: AGAGGTGGCCATAAAATGAGTGAAGAAGCTGCTCCTGAATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS-3UTR CAA 90 bp | CTCAATGGCCATCAAGGTATTTTTATTATAGAATGTCATTGTCTGCTGGTCTTCACTCCATTTGGGGCCTaGGGAACCACCCTCCTGAAT | + |
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Preference number: 5 (lower is better) Translates to: LNGHQGIFIIECHCLLVFTPFGA*GTTLLN Trigger: ATTCAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGT...GAAGACCAGCAGACAATGACATTCTATAATAAAAATACCTTGATGGCCATTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS CCA 90 bp | TTTCTATATAGGCTTGAGGTTTCATGGGCTTTTCCCAGTCTTGGTTaGTCCATGATGCCATCCTTGTTCTTCTCCCATTTAGTCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: FLYRLEVSWAFPSLG*SMMPSLFFSHLVRL Trigger: AAGTCTGACTAAATGGGAGAAGAACAAGGATGGCATCATGGACCAACCAAGACTGGGAAAAGCCCATGAAACCTCAAGCCTATATAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163281.2 |
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| CDS GCA 90 bp | GTCCATCATCCAAAATGTTTATATTATGAATTCGGAGGGACACTTTaGCTTCTCCAATGGCCTCCTTCACAAACTCTGTACGATTTGCAT | + |
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Preference number: 5 (lower is better) Translates to: VHHPKCLYYEFGGTL*LLQWPPSQTLYDLH Trigger: ATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTCATAATATAAACATTTTGGATGATGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS GCA 90 bp | TCCAGTTGTTGTATAAGGGAAACTGAGGATCTGAAAGAGAGACTCTaGTGCGGTGAGGTAAATATATTGCAAAGAATGTTCCAGTACAGA | + |
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Preference number: 5 (lower is better) Translates to: SSCCIRETEDLKERL*CGEVNILQRMFQYR Trigger: TCTGTACTGGAACATTCTTTGCAATATATTTACCTCACCGCAGCAGAGTCTCTCTTTCAGATCCTCAGTTTCCCTTATACAACAACTGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163281.2 |
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| CDS CCA 90 bp | AAATGTTTATATTATGAATTCGGAGGGACACTTTGCCTTCTCCAATaGCCTCCTTCACAAACTCTGTACGATTTGCATATTCAGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: KCLYYEFGGTLCLLQ*PPSQTLYDLHIQEQ Trigger: CTGCTCCTGAATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTCATAATATAAACATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS GCA 90 bp | AGTTGTTGTATAAGGGAAACTGAGGATCTGAAAGAGAGACTCTGCTaGGGTGAGGTAAATATATTGCAAAGAATGTTCCAGTACAGAATA | + |
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Preference number: 5 (lower is better) Translates to: SCCIRETEDLKERLC*GEVNILQRMFQYRI Trigger: TATTCTGTACTGGAACATTCTTTGCAATATATTTACCTCACCGCAGCAGAGTCTCTCTTTCAGATCCTCAGTTTCCCTTATACAACAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163281.2 |
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| CDS-3UTR CAA 90 bp | TCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGTGATGAAATACTCATCACCTGTTACAGGGTaGAAAATACAGCAAATGATG | + |
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Preference number: 5 (lower is better) Translates to: SCEMSSKAQVLLIVMKYSSPVTG*KIQQMM Trigger: CATCATTTGCTGTATTTTCAACCCTGTAACAGGTGA...TGAGTATTTCATCACTATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS TCA 90 bp | TTCACCTGTTACAGGGTTGAAAATACAGCAAATGATGCTGCCATGTaGCATGTTTGTGAGGAGAAGAGTCATCTTCATATAGAAAAATCT | + |
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Preference number: 5 (lower is better) Translates to: FTCYRVENTANDAAM*HVCEEKSHLHIEKS Trigger: AGATTTTTCTATATGAAGATGACTCTTCTCCTCACAAACATGTCACATGGCAGCATCATTTGCTGTATTTTCAACCCTGTAACAGGTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS-3UTR CAA 90 bp | CTGAAACTCTCATCATACCACATGACAATACCTGTCTTACTTAAAGAACTCCATTCACCTGTTACAGGGTaGAAAATACAGCAAATGATG | + |
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Preference number: 5 (lower is better) Translates to: LKLSSYHMTIPVLLKELHSPVTG*KIQQMM Trigger: CATCATTTGCTGTATTTTCAACCCTGTAACAGGTGA...ATGGAGTTCTTTAAGTAAGACAGGTATTGTCATGTGGTATGATGAGAGTTTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS-3UTR CAA 90 bp | AATACTGGAAAATGGTCCTGTGAGATGTCATCAAAAGCACAGGTTCTCCTAATAGGTGAGGTAAATATATaGCAAAGAATGTTCCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: NTGKWSCEMSSKAQVLLIGEVNI*QRMFQY Trigger: GTACTGGAACATTCTTTGCAATATATTTACCTCACC...TATTAGGAGAACCTGTGCTTTTGATGACATCTCACAGGACCATTTTCCAGTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106568.8 |
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| CDS CCA 72 bp | GGAAGTGTTGCCCCCTTACTATCTCTCCACTCCATTTaGGGCCTTGGGAACCACCCTCCTGAATTACACTCC | + |
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Preference number: 6 (lower is better) Translates to: GSVAPLLSLHSI*GLGNHPPELHS Trigger: GGAGTGTAATTCAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGTAAGGGGGCAACACTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS TCA 72 bp | GCCTTGGGAACCACCCTCCTGAATTACACTCCACCATaGCTCCATCAGCATCAGGAGCCTGAACATGTATCT | + |
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Preference number: 6 (lower is better) Translates to: ALGTTLLNYTPP*LHQHQEPEHVS Trigger: AGATACATGTTCAGGCTCCTGATGCTGATGGAGTCATGGTGGAGTGTAATTCAGGAGGGTGGTTCCCAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS TCA 72 bp | TTACACTCCACCATGACTCCATCAGCATCAGGAGCCTaGACATGTATCTCTGTCTCCAATCCAACTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LHSTMTPSASGA*TCISVSNPTAV Trigger: GACAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCTCCTGATGCTGATGGAGTCATGGTGGAGTGTAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CCA 72 bp | AGGCTTGAGGTTTCATGGGCTTTTCCCAGTCTTGGTTaGTCCATGATGCCATCCTTGTTCTTCTCCCATTTA | + |
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Preference number: 6 (lower is better) Translates to: RLEVSWAFPSLG*SMMPSLFFSHL Trigger: TAAATGGGAGAAGAACAAGGATGGCATCATGGACCAACCAAGACTGGGAAAAGCCCATGAAACCTCAAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163281.2 |
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| CDS TCA 72 bp | ACAGCCAAGCCAGATGACAGTACTCACTTGCTAGAATaGTACTTGTTTGCTTCTCTTCACCTGTTACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: TAKPDDSTHLLE*YLFASLHLLQG Trigger: ACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCTAGCAAGTGAGTACTGTCATCTGGCTTGGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS CAA 72 bp | ACATGTATCTCTGTCTCCAATCCAACTGCTGTCACATaGAGGTTCATGATAGCCGCATCAATGAAGCCACTA | + |
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Preference number: 6 (lower is better) Translates to: TCISVSNPTAVT*RFMIAASMKPL Trigger: TAGTGGCTTCATTGATGCGGCTATCATGAACCTCAATGTGACAGCAGTTGGATTGGAGACAGAGATACATGT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS TCA 72 bp | CAGGTGTCTTGTGGGAGTAGTTACCCTCAGTTTCTCTaGAGATACTACCACTTGCAGAAAAAGAAAGTACAC | + |
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Preference number: 6 (lower is better) Translates to: QVSCGSSYPQFL*RYYHLQKKKVH Trigger: GTGTACTTTCTTTTTCTGCAAGTGGTAGTATCTTCAGAGAAACTGAGGGTAACTACTCCCACAAGACACCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS GCA 72 bp | CCAAAATGTTTATATTATGAATTCGGAGGGACACTTTaGCTTCTCCAATGGCCTCCTTCACAAACTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: PKCLYYEFGGTL*LLQWPPSQTLY Trigger: GTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTCATAATATAAACATTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS GCA 72 bp | GGTCACCACACAAAAACATTTAGACAGGCATCCAGATaGACACCCTGTTCTCCAGTAAAAGCAGATTATATA | + |
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Preference number: 6 (lower is better) Translates to: GHHTKTFRQASR*TPCSPVKADYI Trigger: TATATAATCTGCTTTTACTGGAGAACAGGGTGTGCATCTGGATGCCTGTCTAAATGTTTTTGTGTGGTGACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CCA 72 bp | TATTATGAATTCGGAGGGACACTTTGCCTTCTCCAATaGCCTCCTTCACAAACTCTGTACGATTTGCATATT | + |
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Preference number: 6 (lower is better) Translates to: YYEFGGTLCLLQ*PPSQTLYDLHI Trigger: AATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTCATAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CAA 72 bp | CTTCTCCAATGGCCTCCTTCACAAACTCTGTACGATTaGCATATTCAGGAGCAGCTTCTTCACTCATTTTAT | + |
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Preference number: 6 (lower is better) Translates to: LLQWPPSQTLYD*HIQEQLLHSFY Trigger: ATAAAATGAGTGAAGAAGCTGCTCCTGAATATGCAAATCGTACAGAGTTTGTGAAGGAGGCCATTGGAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CAA 90 bp | CTTGCTAGAATGATACTTGTTTGCTTCTCTTCACCTGTTACAGGGTaGAAAATACAGCAAATGATGCTGCCATGTGACATGTTTGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LARMILVCFSSPVTG*KIQQMMLPCDMFVR Trigger: CCTCACAAACATGTCACATGGCAGCATCATTTGCTGTATTTTCAACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCTAGCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS CAA 90 bp | TTTGCTAGAATGATACTTGTTTGCTTCTCTTCACCTGTTACAGGGTaGAAAATACAGCAAATGATGCTGCCATGTGACATGTTTGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: FARMILVCFSSPVTG*KIQQMMLPCDMFVR Trigger: CCTCACAAACATGTCACATGGCAGCATCATTTGCTGTATTTTCAACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCTAGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS GCA 72 bp | TGTATAAGGGAAACTGAGGATCTGAAAGAGAGACTCTaGTGCGGTGAGGTAAATATATTGCAAAGAATGTTC | + |
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Preference number: 6 (lower is better) Translates to: CIRETEDLKERL*CGEVNILQRMF Trigger: GAACATTCTTTGCAATATATTTACCTCACCGCAGCAGAGTCTCTCTTTCAGATCCTCAGTTTCCCTTATACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163281.2 |
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| CDS TCA 72 bp | TACAGGGTTGAAAATACAGCAAATGATGCTGCCATGTaGCATGTTTGTGAGGAGAAGAGTCATCTTCATATA | + |
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Preference number: 6 (lower is better) Translates to: YRVENTANDAAM*HVCEEKSHLHI Trigger: TATATGAAGATGACTCTTCTCCTCACAAACATGTCACATGGCAGCATCATTTGCTGTATTTTCAACCCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055014.11 ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS TCA 72 bp | TTTTGTCTTTGTTTCCCAATTAACAGCCAAGCCAGATaGCAGTACTCACTTGCTAGAATGATACTTGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: FCLCFPINSQAR*QYSLARMILVC Trigger: GCAAACAAGTATCATTCTAGCAAGTGAGTACTGTCATCTGGCTTGGCTGTTAATTGGGAAACAAAGACAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055014.11 |
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| CDS TCA 72 bp | AAGAATGTTCCAGTACAGAATAATAAATGCACTATTTaGACAGGCCAGGAGGTCACCACACAAAAACATTTA | + |
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Preference number: 6 (lower is better) Translates to: KNVPVQNNKCTI*TGQEVTTQKHL Trigger: TAAATGTTTTTGTGTGGTGACCTCCTGGCCTGTTCAAATAGTGCATTTATTATTCTGTACTGGAACATTCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106568.8 ENSMUST00000163281.2 |
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| CDS CCA 72 bp | TATATAGAATATATACAGAGAGCATTATCCATACAATaGAAGCTAAACTTTCCATCCAAATACGGTCCCGAT | + |
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Preference number: 6 (lower is better) Translates to: YIEYIQRALSIQ*KLNFPSKYGPD Trigger: ATCGGGACCGTATTTGGATGGAAAGTTTAGCTTCCATTGTATGGATAATGCTCTCTGTATATATTCTATATA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106568.8 ENSMUST00000163281.2 |
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