Pregenerated sensors for SKINT6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087194Ensembl transcript IDs: ENSMUST00000138966.9, ENSMUST00000171224.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AACCAGCGAATTTCCATGTGCTTTGCTTGTTGTGGTGGAGACAACTaGCAACTGAGTTCTAGATTTCCACCCAATGGAACCAAGACTGGA | + |
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Preference number: 5 (lower is better) Translates to: NQRISMCFACCGGDN*QLSSRFPPNGTKTG Trigger: TCCAGTCTTGGTTCCATTGGGTGGAAATCTAGAACTCAGTTGTCAGTTGTCTCCACCACAACAAGCAAAGCACATGGAAATTCGCTGGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | CCTCACACCTGTGCTGTTTGGGGGATGCATAAGAATCTGTATGTCTaGGCTTGTAGCTGTGACCTTGACTTCTATGATATGCTCTTCATA | + |
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Preference number: 5 (lower is better) Translates to: PHTCAVWGMHKNLYV*ACSCDLDFYDMLFI Trigger: TATGAAGAGCATATCATAGAAGTCAAGGTCACAGCTACAAGCTCAGACATACAGATTCTTATGCATCCCCCAAACAGCACAGGTGTGAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CCA 90 bp | TCTAAGCCATTCACAGTGAATTGTTCTGTACTCAGTGCTACCATCTaGAGGAGAAACAAAACAACACAGTGTGCAGTAAGAGGTACTCCT | + |
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Preference number: 5 (lower is better) Translates to: SKPFTVNCSVLSATI*RRNKTTQCAVRGTP Trigger: AGGAGTACCTCTTACTGCACACTGTGTTGTTTTGTTTCTCCTCCAGATGGTAGCACTGAGTACAGAACAATTCACTGTGAATGGCTTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | CTTTACCATTTCTATACAGGTATACTGGCTCTGAATAGCGATTCTTaGACCAGCGAATTTCCATGTGCTTTGCTTGTTGTGGTGGAGACA | + |
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Preference number: 5 (lower is better) Translates to: LYHFYTGILALNSDS*TSEFPCALLVVVET Trigger: TGTCTCCACCACAACAAGCAAAGCACATGGAAATTCGCTGGTTCAAGAATCGCTATTCAGAGCCAGTATACCTGTATAGAAATGGTAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | TGCTTCATTCAGGTCTTTACCATTTCTATACAGGTATACTGGCTCTaGATAGCGATTCTTGAACCAGCGAATTTCCATGTGCTTTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: CFIQVFTISIQVYWL*IAILEPANFHVLCL Trigger: CAAGCAAAGCACATGGAAATTCGCTGGTTCAAGAATCGCTATTCAGAGCCAGTATACCTGTATAGAAATGGTAAAGACCTGAATGAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | GTTGTTAAACATGATCAGCACACACAGGATCACACTAGTATCTTTTaGCCACAAAGTATCCAGTTCAAAATGTTGGTCTGCCTCTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: VVKHDQHTQDHTSIF*PQSIQFKMLVCLSL Trigger: CAAAGAGAGGCAGACCAACATTTTGAACTGGATACTTTGTGGTCAAAAGATACTAGTGTGATCCTGTGTGTGCTGATCATGTTTAACAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | CAGCATCTCTCTTGTCTCTGTATTCACACTGGAACTTTGAAGATCTaGTTGAATTATTTGAAACAGCAACTCTGTCCCTGGATTCACAAT | + |
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Preference number: 5 (lower is better) Translates to: QHLSCLCIHTGTLKI*LNYLKQQLCPWIHN Trigger: ATTGTGAATCCAGGGACAGAGTTGCTGTTTCAAATAATTCAATCAGATCTTCAAAGTTCCAGTGTGAATACAGAGACAAGAGAGATGCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS GCA 90 bp | GTCATCTTTCAGGAGTTCAGTTCTCTCTACATACTTGTAGACAATTaGTTCATTCAGGTCTTTACCATTTCTATACAGGTATACTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: VIFQEFSSLYILVDN*FIQVFTISIQVYWL Trigger: GAGCCAGTATACCTGTATAGAAATGGTAAAGACCTGAATGAAGCAATTGTCTACAAGTATGTAGAGAGAACTGAACTCCTGAAAGATGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | TTTGACCACAAAGTATCCAGTTCAAAATGTTGGTCTGCCTCTCTTTaGTTTAAATGCCTAATGAGAGTGACTACTATAATTGCGAACACT | + |
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Preference number: 5 (lower is better) Translates to: FDHKVSSSKCWSASL*FKCLMRVTTIIANT Trigger: AGTGTTCGCAATTATAGTAGTCACTCTCATTAGGCATTTAAATCAAAGAGAGGCAGACCAACATTTTGAACTGGATACTTTGTGGTCAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CCA 90 bp | ACTCAATTCTGCCCAACAGCAATTTCTTTTTCTCTTGATGCATGCTaGTGCTTTGAAGAATCGACGCAATTATATTACACAGGAAATTTT | + |
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Preference number: 5 (lower is better) Translates to: TQFCPTAISFSLDAC*CFEESTQLYYTGNF Trigger: AAAATTTCCTGTGTAATATAATTGCGTCGATTCTTCAAAGCACCAGCATGCATCAAGAGAAAAAGAAATTGCTGTTGGGCAGAATTGAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 90 bp | TTGTCCATCAGCAATTCTTTAGTCTCTTGTTGCACACTGGAATTTTaGAGAATCAACTCAATTCTGTTCAACAGCAAATCTTTTGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LSISNSLVSCCTLEF*RINSILFNSKSFVS Trigger: AGAGACAAAAGATTTGCTGTTGAACAGAATTGAGTTGATTCTTCAAAATTCCAGTGTGCAACAAGAGACTAAAGAATTGCTGATGGACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | ATGGAACCAAGACTGGACTCTCTAAGCCATTCACAGTaGATTGTTCTGTACTCAGTGCTACCATCTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: MEPRLDSLSHSQ*IVLYSVLPSGG Trigger: TCCTCCAGATGGTAGCACTGAGTACAGAACAATTCACTGTGAATGGCTTAGAGAGTCCAGTCTTGGTTCCAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | TGTGCTGTTTGGGGGATGCATAAGAATCTGTATGTCTaGGCTTGTAGCTGTGACCTTGACTTCTATGATATG | + |
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Preference number: 6 (lower is better) Translates to: CAVWGMHKNLYV*ACSCDLDFYDM Trigger: CATATCATAGAAGTCAAGGTCACAGCTACAAGCTCAGACATACAGATTCTTATGCATCCCCCAAACAGCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS GCA 72 bp | CTAGATCCACACTGGAACTTTGAATACTTGATTGGATaGTTTCCAACAGCCACTCTTTTGTCCCTAGATCCA | + |
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Preference number: 6 (lower is better) Translates to: LDPHWNFEYLIG*FPTATLLSLDP Trigger: TGGATCTAGGGACAAAAGAGTGGCTGTTGGAAAGCATCCAATCAAGTATTCAAAGTTCCAGTGTGGATCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CTTTCGTCCCTAGATCCACACTGGAACTTTGAATACTaGATTGAACCCTTTCCAACAGCCACTCTTTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: LSSLDPHWNFEY*IEPFPTATLLF Trigger: GAACAAAAGAGTGGCTGTTGGAAAGGGTTCAATCAAGTATTCAAAGTTCCAGTGTGGATCTAGGGACGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | TTCTATACAGGTATACTGGCTCTGAATAGCGATTCTTaGACCAGCGAATTTCCATGTGCTTTGCTTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: FYTGILALNSDS*TSEFPCALLVV Trigger: CACAACAAGCAAAGCACATGGAAATTCGCTGGTTCAAGAATCGCTATTCAGAGCCAGTATACCTGTATAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | CAGGTCTTTACCATTTCTATACAGGTATACTGGCTCTaGATAGCGATTCTTGAACCAGCGAATTTCCATGTG | + |
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Preference number: 6 (lower is better) Translates to: QVFTISIQVYWL*IAILEPANFHV Trigger: CACATGGAAATTCGCTGGTTCAAGAATCGCTATTCAGAGCCAGTATACCTGTATAGAAATGGTAAAGACCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | CATGATCAGCACACACAGGATCACACTAGTATCTTTTaGCCACAAAGTATCCAGTTCAAAATGTTGGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: HDQHTQDHTSIF*PQSIQFKMLVC Trigger: GCAGACCAACATTTTGAACTGGATACTTTGTGGTCAAAAGATACTAGTGTGATCCTGTGTGTGCTGATCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CCA 72 bp | TTCACAGTGAATTGTTCTGTACTCAGTGCTACCATCTaGAGGAGAAACAAAACAACACAGTGTGCAGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: FTVNCSVLSATI*RRNKTTQCAVR Trigger: TCTTACTGCACACTGTGTTGTTTTGTTTCTCCTCCAGATGGTAGCACTGAGTACAGAACAATTCACTGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CCA 72 bp | TTTCCAACAGCAACTCTTTCGTCCCTAGATCCACACTaGAACTTTGAATACTTGATTGAACCCTTTCCAACA | + |
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Preference number: 6 (lower is better) Translates to: FPTATLSSLDPH*NFEYLIEPFPT Trigger: TGTTGGAAAGGGTTCAATCAAGTATTCAAAGTTCCAGTGTGGATCTAGGGACGAAAGAGTTGCTGTTGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | TTTTTGTCCCTAGATCCACACTGGAACTTTGAATACTaGATTGGATGCTTTCCAACAGCCACTCTTTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: FLSLDPHWNFEY*IGCFPTATLLS Trigger: GGACAAAAGAGTGGCTGTTGGAAAGCATCCAATCAAGTATTCAAAGTTCCAGTGTGGATCTAGGGACAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CAACTCAATTCTGCCCAACAGCAATTTCTTTTTCTCTaGATGCATGCTGGTGCTTTGAAGAATCGACGCAAT | + |
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Preference number: 6 (lower is better) Translates to: QLNSAQQQFLFL*MHAGALKNRRN Trigger: ATTGCGTCGATTCTTCAAAGCACCAGCATGCATCAAGAGAAAAAGAAATTGCTGTTGGGCAGAATTGAGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | CCAGCAACTCTTCTGTCACTGAATTCACACTGGAACTTTGAACAGTaGGTTGAGTTATTTCAAACAGCATCTCTCTTGTCTCTGTATTCA | + |
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Preference number: 6 (lower is better) Translates to: PATLLSLNSHWNFEQ*VELFQTASLLSLYS Trigger: TGAATACAGAGACAAGAGAGATGCTGTTTGAAATAACTCAACCAACTGTTCAAAGTTCCAGTGTGAATTCAGTGACAGAAGAGTTGCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | TCTTGTCTCTGTATTCACACTGGAACTTTGAAGATCTaGTTGAATTATTTGAAACAGCAACTCTGTCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SCLCIHTGTLKI*LNYLKQQLCPW Trigger: CCAGGGACAGAGTTGCTGTTTCAAATAATTCAATCAGATCTTCAAAGTTCCAGTGTGAATACAGAGACAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS GCA 72 bp | ATAATTGCGAACACTGAAATTCCGAGGTCCAATGCATaGTTTTTCCAAAAAGGATTTCTCTTATTGCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: IIANTEIPRSNA*FFQKGFLLLQD Trigger: GTCCTGCAATAAGAGAAATCCTTTTTGGAAAAAGCATGCATTGGACCTCGGAATTTCAGTGTTCGCAATTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | GAAGGATCGACTGAATACTTCCCAACAGCAAAGATTTaGTCTCTTTTTGCACACTGGAACTTTGAAGAATCA | + |
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Preference number: 6 (lower is better) Translates to: EGSTEYFPTAKI*SLFAHWNFEES Trigger: TGATTCTTCAAAGTTCCAGTGTGCAAAAAGAGACAAAATCTTTGCTGTTGGGAAGTATTCAGTCGATCCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CAGCTCAATTCTGTTCAACAGCAAATCTTTTGTCTCTaGATGCACCCAGGTATATCGAAGAATCGAATCAAT | + |
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Preference number: 6 (lower is better) Translates to: QLNSVQQQIFCL*MHPGISKNRIN Trigger: ATTGATTCGATTCTTCGATATACCTGGGTGCATCAAGAGACAAAAGATTTGCTGTTGAACAGAATTGAGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | TGTCATCTTTCAGGAGTTCAGTTCTCTCTACATACTTGTAGACAATaGCTTCATTCAGGTCTTTACCATTTCTATACAGGTATACTGGCT | + |
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Preference number: 6 (lower is better) Translates to: CHLSGVQFSLHTCRQ*LHSGLYHFYTGILA Trigger: AGCCAGTATACCTGTATAGAAATGGTAAAGACCTGAATGAAGCAATTGTCTACAAGTATGTAGAGAGAACTGAACTCCTGAAAGATGACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | AAGGATCGACTGAATACTTCCCAACAGCAAAGATTTTGTCTCTTTTaGCACACTGGAACTTTGAAGAATCAAGTGAATTCTTTCCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: KDRLNTSQQQRFCLF*HTGTLKNQVNSFQE Trigger: CTCTTGGAAAGAATTCACTTGATTCTTCAAAGTTCCAGTGTGCAAAAAGAGACAAAATCTTTGCTGTTGGGAAGTATTCAGTCGATCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | TTTGGTCCCTATATCCACACTGGAACTTTGAATACTTaGTTGAATAATTTTCAACAGCCACTCCTTTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: FGPYIHTGTLNT*LNNFQQPLLCL Trigger: GAGACAAAGGAGTGGCTGTTGAAAATTATTCAATCAAGTATTCAAAGTTCCAGTGTGGATATAGGGACCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | AGCTCAATTCTGTTCAACAGCAAATCTTTTGTCTCTTaGTGCACCCAGGTATATCGAAGAATCGAATCAATT | + |
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Preference number: 6 (lower is better) Translates to: SSILFNSKSFVS*CTQVYRRIESI Trigger: AATTGATTCGATTCTTCGATATACCTGGGTGCATCAAGAGACAAAAGATTTGCTGTTGAACAGAATTGAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS GCA 72 bp | TGTGTTCTGTATTTGCAGATGCATAACAAGGATTATTaGAGAGTAGACTATGAAAAACAGGGGTTGAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: CVLYLQMHNKDY*RVDYEKQGLRE Trigger: TTCTCTCAACCCCTGTTTTTCATAGTCTACTCTGCAATAATCCTTGTTATGCATCTGCAAATACAGAACACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CAGCAAATCTTTTGTCTCTTGATGCACTGTTGTATCTaGAAGAATCTGCTCAATTTGATCCAACAGGTGATT | + |
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Preference number: 6 (lower is better) Translates to: QQIFCLLMHCCI*KNLLNLIQQVI Trigger: AATCACCTGTTGGATCAAATTGAGCAGATTCTTCAAGATACAACAGTGCATCAAGAGACAAAAGATTTGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | TCTGTCCAAGAGCAACTTTTCTCTTCCTTGATTCACACTGGAAAGTaGAAGAATCCTTTGAGTTGTATCATTCAGTATATTTTCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: SVQEQLFSSLIHTGK*KNPLSCIIQYIFCF Trigger: GAAGCAGAAAATATACTGAATGATACAACTCAAAGGATTCTTCAACTTTCCAGTGTGAATCAAGGAAGAGAAAAGTTGCTCTTGGACAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | TTGAAGAATCTGCTGAATTCTGTCCAAGAGCAACTTTTCTCTTCCTaGATTCACACTGGAAAGTTGAAGAATCCTTTGAGTTGTATCATT | + |
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Preference number: 6 (lower is better) Translates to: LKNLLNSVQEQLFSS*IHTGKLKNPLSCII Trigger: AATGATACAACTCAAAGGATTCTTCAACTTTCCAGTGTGAATCAAGGAAGAGAAAAGTTGCTCTTGGACAGAATTCAGCAGATTCTTCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | TGGAACTTTGAAGAATCAGCTCAATTCTGTTCAACAGCAAATCTTTaGTCTCTTGATGCACCCAGGTATATCGAAGAATCGAATCAATTT | + |
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Preference number: 6 (lower is better) Translates to: WNFEESAQFCSTANL*SLDAPRYIEESNQF Trigger: AAATTGATTCGATTCTTCGATATACCTGGGTGCATCAAGAGACAAAAGATTTGCTGTTGAACAGAATTGAGCTGATTCTTCAAAGTTCCA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | TTGAAGAATCAACTCAATTCTGCCCAACAGCAATTTCTTTTTCTCTaGATGCATGCTGGTGCTTTGAAGAATCGACGCAATTATATTACA | + |
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Preference number: 6 (lower is better) Translates to: LKNQLNSAQQQFLFL*MHAGALKNRRNYIT Trigger: TGTAATATAATTGCGTCGATTCTTCAAAGCACCAGCATGCATCAAGAGAAAAAGAAATTGCTGTTGGGCAGAATTGAGTTGATTCTTCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | GCGAGTAGTAATCCTAGAACCATTATCATTTCTACCATCCAGCTATaGTACAAGGAAAATAATGAATCTGTGTTCTGTATTTGCAGATGC | + |
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Preference number: 6 (lower is better) Translates to: ASSNPRTIIISTIQL*YKENNESVFCICRC Trigger: GCATCTGCAAATACAGAACACAGATTCATTATTTTCCTTGTACAATAGCTGGATGGTAGAAATGATAATGGTTCTAGGATTACTACTCGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | ACTCAATTCTGTTCAACAGCAAATCTTTTGTCTCTTGATGCACTGTaGTATCTTGAAGAATCTGCTCAATTTGATCCAACAGGTGATTTT | + |
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Preference number: 6 (lower is better) Translates to: TQFCSTANLLSLDAL*YLEESAQFDPTGDF Trigger: AAAATCACCTGTTGGATCAAATTGAGCAGATTCTTCAAGATACAACAGTGCATCAAGAGACAAAAGATTTGCTGTTGAACAGAATTGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 90 bp | AGGAACTTGGAGAACTTGATTGAACAATTTTCAACAGCAACTTTTTaGTCTCTTGTTGCACACTGGAACTTTGAAGAATCAACTCAATTC | + |
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Preference number: 6 (lower is better) Translates to: RNLENLIEQFSTATF*SLVAHWNFEESTQF Trigger: GAATTGAGTTGATTCTTCAAAGTTCCAGTGTGCAACAAGAGACAAAAAAGTTGCTGTTGAAAATTGTTCAATCAAGTTCTCCAAGTTCCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | TTTGGTCCCTCTATGCACACTGGAATTTTGAATACTTaGTTGAATAATTTCCAACAGCATCCTTTTTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: FGPSMHTGILNT*LNNFQQHPFCL Trigger: GAGACAAAAAGGATGCTGTTGGAAATTATTCAATCAAGTATTCAAAATTCCAGTGTGCATAGAGGGACCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | TTTCAACAACCAACATTTTGTTTCTGGATTCACACTTaGACTTTGAAGAATCTGCTGAATTCTGTCCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: FQQPTFCFWIHT*TLKNLLNSVQE Trigger: CTCTTGGACAGAATTCAGCAGATTCTTCAAAGTTCAAGTGTGAATCCAGAAACAAAATGTTGGTTGTTGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CCA 72 bp | TTCCCAACAGCAAAGATTTTGTCTCTTTTTGCACACTaGAACTTTGAAGAATCAAGTGAATTCTTTCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: FPTAKILSLFAH*NFEESSEFFPR Trigger: TCTTGGAAAGAATTCACTTGATTCTTCAAAGTTCCAGTGTGCAAAAAGAGACAAAATCTTTGCTGTTGGGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CAGCAAAGATTTTGTCTCTTTTTGCACACTGGAACTTaGAAGAATCAAGTGAATTCTTTCCAAGAGCAAATC | + |
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Preference number: 6 (lower is better) Translates to: QQRFCLFLHTGT*KNQVNSFQEQI Trigger: GATTTGCTCTTGGAAAGAATTCACTTGATTCTTCAAAGTTCCAGTGTGCAAAAAGAGACAAAATCTTTGCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CAACTCAATTCTGTTCAACAGCAAATCTTTTGTCTCTaGATGCACTGTTGTATCTTGAAGAATCTGCTCAAT | + |
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Preference number: 6 (lower is better) Translates to: QLNSVQQQIFCL*MHCCILKNLLN Trigger: ATTGAGCAGATTCTTCAAGATACAACAGTGCATCAAGAGACAAAAGATTTGCTGTTGAACAGAATTGAGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS TCA 72 bp | AGCAATTCTTTAGTCTCTTGTTGCACACTGGAATTTTaGAGAATCAACTCAATTCTGTTCAACAGCAAATCT | + |
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Preference number: 6 (lower is better) Translates to: SNSLVSCCTLEF*RINSILFNSKS Trigger: AGATTTGCTGTTGAACAGAATTGAGTTGATTCTTCAAAATTCCAGTGTGCAACAAGAGACTAAAGAATTGCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | CAGCATACTTTTTGTCTCTTGATGCACGCTGGTTTTTaGAAGAATCGGATGAATTATATTCAACAGGAAATA | + |
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Preference number: 6 (lower is better) Translates to: QHTFCLLMHAGF*KNRMNYIQQEI Trigger: TATTTCCTGTTGAATATAATTCATCCGATTCTTCAAAAAACCAGCGTGCATCAAGAGACAAAAAGTATGCTG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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| CDS CAA 72 bp | GAGAACTTGATTGAACAATTTTCAACAGCAACTTTTTaGTCTCTTGTTGCACACTGGAACTTTGAAGAATCA | + |
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Preference number: 6 (lower is better) Translates to: ENLIEQFSTATF*SLVAHWNFEES Trigger: TGATTCTTCAAAGTTCCAGTGTGCAACAAGAGACAAAAAAGTTGCTGTTGAAAATTGTTCAATCAAGTTCTC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000138966.9 ENSMUST00000171224.2 |
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