RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SKINT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055960

Ensembl transcript IDs: ENSMUST00000069769.9, ENSMUST00000106564.8, ENSMUST00000106565.8, ENSMUST00000106566.2

Found 175 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCGCATGCTCAGTCCAAACATCAGCCTCTGTATTTGTCATGTTCTaGCAGAGCCTCTCAGGAGACAGCTATATCAGGTTCCTGTCAGCT +
Preference number: 1 (lower is better)
Translates to: SACSVQTSASVFVMF*QSLSGDSYIRFLSA
Trigger: AGCTGACAGGAACCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGCATGCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR TCA 90 bp ACTAAGGCATTGAGCCTTCAAAGGACAAAGGATTTCTCCTACCATTaGTGCTGGACAAAGCTCTGCTACATATGCAGCTCAAGGCATGGG +
Preference number: 1 (lower is better)
Translates to: TKALSLQRTKDFSYH*CWTKLCYICSSRHG
Trigger: CCCATGCCTTGAGCTGCATATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGAAGGCTCAATGCCTTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR TCA 90 bp CCCATGCTCTTCTCTCCACCCTTGAATTTCCCTACACTAAGGCATTaGGCCTTCAAAGGACAAAGGATTTCTCCTACCATTGATGCTGGA +
Preference number: 1 (lower is better)
Translates to: PMLFSPPLNFPTLRH*AFKGQRISPTIDAG
Trigger: TCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGAAGGCTCAATGCCTTAGTGTAGGGAAATTCAAGGGTGGAGAGAAGAGCATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CCA 90 bp TCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTaGATTTGTTGGCTATATATAGGATGGATTCCCAGGTGGAGCAAC +
Preference number: 1 (lower is better)
Translates to: SGSCQLELLGIHNSV*ICWLYIGWIPRWSN
Trigger: GTTGCTCCACCTGGGAATCCATCCTATATATAGCCAACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR GCA 90 bp GATTCCCAGGTGGAGCAACCTTTGAATGGCCTTCCCTTCAGTCTCTaGTTCATAGTTTGTTTCTGTATTTGCTCCTGTGAGTATTTTATT +
Preference number: 1 (lower is better)
Translates to: DSQVEQPLNGLPFSL*FIVCFCICSCEYFI
Trigger: AATAAAATACTCACAGGAGCAAATACAGAAACAAACTATGAAGCAGAGACTGAAGGGAAGGCCATTCAAAGGTTGCTCCACCTGGGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR TCA 90 bp GAATGTTCTTCTTTCTCCACATCTTTGCTAGCTTCTGCTGTCACCTaGGTTTTTGATCTTAGTGATTCCGACTGGTATGAGCTGAAATCT +
Preference number: 1 (lower is better)
Translates to: ECSSFSTSLLASAVT*VFDLSDSDWYELKS
Trigger: AGATTTCAGCTCATACCAGTCGGAATCACTAAGATCAAAAACTCAGGTGACAGCAGAAGCTAGCAAAGATGTGGAGAAAGAAGAACATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp GCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTTGATGCCCCTTAAGTCTCTGTaGGCCCCCACTAGCCCTGTG +
Preference number: 2 (lower is better)
Translates to: ATYAAQGMGPSMCAPWLMPLKSL*APTSPV
Trigger: CACAGGGCTAGTGGGGGCTCACAGAGACTTAAGGGG...CATCAACCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGAGGTGGAGCAACCTTTaGATGGCCTTCCCTTCAGTC +
Preference number: 2 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWRWSNL*MAFPSV
Trigger: GACTGAAGGGAAGGCCATTCAAAGGTTGCTCCACCT...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGACCCCTTAAGTCTCTGTaGGCCCCCACTAGCCCTGTG +
Preference number: 2 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGPLKSL*APTSPV
Trigger: CACAGGGCTAGTGGGGGCTCACAGAGACTTAAGGGG...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CAA 90 bp CTCCACTGGGGAGCGCATGCTCAGTCCAAACATCAGCCTCTGTATTaGTCATGTTCTGGCAGAGCCTCTCAGGAGACAGCTATATCAGGT +
Preference number: 2 (lower is better)
Translates to: LHWGAHAQSKHQPLY*SCSGRASQETAISG
Trigger: ACCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGCATGCGCTCCCCAGTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGCCCACTAGCCCTGTGTaGTTAATTGTGTGGCATGTT +
Preference number: 2 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWPTSPV*LIVWHV
Trigger: AACATGCCACACAATTAACCACACAGGGCTAGTGGG...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTCCCCTTAAGTCTCTGTaGGCCCCCACTAGCCCTGTG +
Preference number: 2 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSPLKSL*APTSPV
Trigger: CACAGGGCTAGTGGGGGCTCACAGAGACTTAAGGGG...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAGTGGGAAAGAGCCCATaGGCACAGAGGAATTTCCCT +
Preference number: 2 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTVGKSP*AQRNFP
Trigger: AGGGAAATTCCTCTGTGCTCATGGGCTCTTTCCCAC...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTGTAATCACCATCCCTaGCCTCAAGCTGTATTACAG +
Preference number: 2 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWCNHHP*PQAVLQ
Trigger: CTGTAATACAGCTTGAGGTCAGGGATGGTGATTACA...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGAGGTTCCTGTCAGCTTaGACTTCTTGGAATCCACAA +
Preference number: 2 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWRFLSA*TSWNPQ
Trigger: TTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCT...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGGGGGGTCTGGTAGGTTaGTATTATTGTTCTTTCTAT +
Preference number: 2 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWGGLVG*YYCSFY
Trigger: ATAGAAAGAACAATAATATCAACCTACCAGACCCCC...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTGTTGGAGAATCTTTTaGGTATATGGCCAGGAGTAT +
Preference number: 2 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWCWRIF*VYGQEY
Trigger: ATACTCCTGGCCATATACCCAAAAGATTCTCCAACA...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp GCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTTGATGGGGGGTCTGGTAGGTTaGTATTATTGTTCTTTCTAT +
Preference number: 2 (lower is better)
Translates to: ATYAAQGMGPSMCAPWLMGGLVG*YYCSFY
Trigger: ATAGAAAGAACAATAATATCAACCTACCAGACCCCC...CATCAACCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp TCAAAGGACAAAGGATTTCTCCTACCATTGATGCTGGACAAAGCTCTGCTACATATGCAGCTCAAGGCATaGGTCCCTCCATGTGTGCTC +
Preference number: 2 (lower is better)
Translates to: SKDKGFLLPLMLDKALLHMQLKA*VPPCVL
Trigger: GAGCACACATGGAGGGACCCATGCCTTGAGCTGCAT...ATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CAA 90 bp CTGGCAGAGCCTCTCAGGAGACAGCTATATCAGGTTCCTGTCAGCTaGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTGGCTAT +
Preference number: 2 (lower is better)
Translates to: LAEPLRRQLYQVPVS*NFLESTIVSGFVGY
Trigger: ATAGCCAACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATACCCCTTAAGTCTCTGTaGGCCCCCACTAGCCCTGTG +
Preference number: 2 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIPLKSL*APTSPV
Trigger: CACAGGGCTAGTGGGGGCTCACAGAGACTTAAGGGG...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp GCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTTGATGGTAGAAGAATGCAAATaGACCCATTCTTATCACCTT +
Preference number: 2 (lower is better)
Translates to: ATYAAQGMGPSMCAPWLMVEECK*THSYHL
Trigger: AAGGTGATAAGAATGGGTTCATTTGCATTCTTCTAC...CATCAACCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CAA 90 bp ACTAGGATTGAAGACCCAGAAATTAACCTACACACCTATGGTCACTaGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGA +
Preference number: 2 (lower is better)
Translates to: TRIEDPEINLHTYGH*IFDIGAKAIQWGRG
Trigger: TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATAGGTGTGTAGGTTAATTTCTGGGTCTTCAATCCTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp GCTCAGTCCAAACATCAGCCTCTGTATTTGTCATGTTCTGGCAGAGCCTCTCAGATTTCCAGACAACTCTaGAAATGGAGGAATGTTCTT +
Preference number: 2 (lower is better)
Translates to: AQSKHQPLYLSCSGRASQISRQL*KWRNVL
Trigger: AAGAACATTCCTCCATTTCCAGAGTTGTCTGGAAAT...CTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CAA 90 bp GATTTGTTGGCTATATATAGGATGGATTCCCAGGTGGAGCAACCTTaGAATGGCCTTCCCTTCAGTCTCTGCTTCATAGTTTGTTTCTGT +
Preference number: 2 (lower is better)
Translates to: DLLAIYRMDSQVEQP*NGLPFSLCFIVCFC
Trigger: ACAGAAACAAACTATGAAGCAGAGACTGAAGGGAAGGCCATTCAAAGGTTGCTCCACCTGGGAATCCATCCTATATATAGCCAACAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp CAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTACAGAGGAATTTCCCTaGACAGAGCACCATTGGTTT +
Preference number: 2 (lower is better)
Translates to: QVPVSLNFLESTIVSGFVTEEFP*TEHHWF
Trigger: AAACCAATGGTGCTCTGTTCAGGGAAATTCCTCTGT...AACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAGTGGGAAAGAGCCCATaGGCACAGAGGAATTTCCCT +
Preference number: 2 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIVGKSP*AQRNFP
Trigger: AGGGAAATTCCTCTGTGCTCATGGGCTCTTTCCCAC...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGTAATCACCATCCCTaGCCTCAAGCTGTATTACAG +
Preference number: 2 (lower is better)
Translates to: TAISGSCQLELLGIHNSVCNHHP*PQAVLQ
Trigger: CTGTAATACAGCTTGAGGTCAGGGATGGTGATTACA...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR GCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTATTCAGAGGTCCCAGTaGAGACTCATTAAGGCTTTA +
Preference number: 2 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSIQRSQ*RLIKAL
Trigger: TAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAAT...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTACCCACTAGCCCTGTGTaGTTAATTGTGTGGCATGTT +
Preference number: 2 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVPTSPV*LIVWHV
Trigger: AACATGCCACACAATTAACCACACAGGGCTAGTGGG...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp GCTCTTCTCTCCACCCTTGAATTTCCCTACACTAAGGCATTGAGCCTTCAAAGGATTTCCAGACAACTCTaGAAATGGAGGAATGTTCTT +
Preference number: 2 (lower is better)
Translates to: ALLSTLEFPYTKALSLQRISRQL*KWRNVL
Trigger: AAGAACATTCCTCCATTTCCAGAGTTGTCTGGAAAT...CCTTTGAAGGCTCAATGCCTTAGTGTAGGGAAATTCAAGGGTGGAGAGAAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCGCTTCTGCTGTCACCTaGGTTTTTGATCTTAGTGAT +
Preference number: 2 (lower is better)
Translates to: TAISGSCQLELLGIHNSVASAVT*VFDLSD
Trigger: ATCACTAAGATCAAAAACTCAGGTGACAGCAGAAGC...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp CAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTCTATGTCCAGTTTTCTaGGGAACTACCAGACTGATT +
Preference number: 2 (lower is better)
Translates to: QVPVSLNFLESTIVSGFVLCPVF*GTTRLI
Trigger: AATCAGTCTGGTAGTTCCTCAGAAAACTGGACATAG...AACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATCCCACTAGCCCTGTGTaGTTAATTGTGTGGCATGTT +
Preference number: 2 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNPTSPV*LIVWHV
Trigger: AACATGCCACACAATTAACCACACAGGGCTAGTGGG...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp CAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTAATCTTTTGGGTATATaGCCAGGAGTATACCACTCC +
Preference number: 2 (lower is better)
Translates to: QVPVSLNFLESTIVSGFVNLLGI*PGVYHS
Trigger: GGAGTGGTATACTCCTGGCCATATACCCAAAAGATT...AACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTGTAGAAGAATGCAAATaGACCCATTCTTATCACCTT +
Preference number: 2 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSVEECK*THSYHL
Trigger: AAGGTGATAAGAATGGGTTCATTTGCATTCTTCTAC...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGCCCACTAGCCCTGTGTaGTTAATTGTGTGGCATGTT +
Preference number: 2 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKPTSPV*LIVWHV
Trigger: AACATGCCACACAATTAACCACACAGGGCTAGTGGG...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR GCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTGAACATTTCTTTAGTTaGTTCCAGGATAGCATAAAG +
Preference number: 2 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSEHFFS*FQDSIK
Trigger: CTTTATGCTATCCTGGAAGCAACTAAAGAAATGTTC...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CCA 90 bp TCAAAGGACAAAGGATTTCTCCTACCATTGATGCTGGACAAAGCTCTGCTACATAGACAACTCTGGAAATaGAGGAATGTTCTTCTTTCT +
Preference number: 2 (lower is better)
Translates to: SKDKGFLLPLMLDKALLHRQLWK*RNVLLS
Trigger: AGAAAGAAGAACATTCCTCCATTTCCAGAGTTGTCT...ATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR GCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAATTCAGAGGTCCCAGTaGAGACTCATTAAGGCTTTA +
Preference number: 2 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIIQRSQ*RLIKAL
Trigger: TAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAAT...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAGTAGAAGAATGCAAATaGACCCATTCTTATCACCTT +
Preference number: 2 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIVEECK*THSYHL
Trigger: AAGGTGATAAGAATGGGTTCATTTGCATTCTTCTAC...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGCAGGTGGAGCAACCTTaGAATGGCCTTCCCTTCAGT +
Preference number: 3 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWQVEQP*NGLPFS
Trigger: ACTGAAGGGAAGGCCATTCAAAGGTTGCTCCACCTG...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp AGCTCTGCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGGTCAGCTTGAACTTCTaGGAATCCACAATAGTGTCT +
Preference number: 3 (lower is better)
Translates to: SSATYAAQGMGPSMCAPWVSLNF*ESTIVS
Trigger: AGACACTATTGTGGATTCCAAGAAGTTCAAGCTGAC...CCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGCAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp GCTCAGTCCAAACATCAGCCTCTGTATTTGTCATGTTCTGGCAGAGCCTCTCAGCAGGTTCCTGTCAGCTaGAACTTCTTGGAATCCACA +
Preference number: 3 (lower is better)
Translates to: AQSKHQPLYLSCSGRASQQVPVS*NFLEST
Trigger: TGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG...CTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR GCA 72 bp TCAGTCCTTTCTCTAATTCCTCCACTGGGGAGCGCATaGTCAGTCCAAACATCAGCCTCTGTATTTGTCATG +
Preference number: 3 (lower is better)
Translates to: SVLSLIPPLGSA*SVQTSASVFVM
Trigger: CATGACAAATACAGAGGCTGATGTTTGGACTGAGCATGCGCTCCCCAGTGGAGGAATTAGAGAAAGGACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp GCTCAGTCCAAACATCAGCCTCTGTATTTGTCATGTTCTGGCAGAGCCTCTCAGCTGTCACCTGAGTTTTaGATCTTAGTGATTCCGACT +
Preference number: 3 (lower is better)
Translates to: AQSKHQPLYLSCSGRASQLSPEF*ILVIPT
Trigger: AGTCGGAATCACTAAGATCAAAAACTCAGGTGACAG...CTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCCAGGTGGAGCAACCTTaGAATGGCCTTCCCTTCAGT +
Preference number: 3 (lower is better)
Translates to: TAISGSCQLELLGIHNSVQVEQP*NGLPFS
Trigger: ACTGAAGGGAAGGCCATTCAAAGGTTGCTCCACCTG...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp GCTCAGTCCAAACATCAGCCTCTGTATTTGTCATGTTCTGGCAGAGCCTCTCAGATCAATAGACTAGGATaGAAGACCCAGAAATTAACC +
Preference number: 3 (lower is better)
Translates to: AQSKHQPLYLSCSGRASQINRLG*KTQKLT
Trigger: GGTTAATTTCTGGGTCTTCAATCCTAGTCTATTGAT...CTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR TCA 72 bp TTGAGCCTTCAAAGGACAAAGGATTTCTCCTACCATTaGTGCTGGACAAAGCTCTGCTACATATGCAGCTCA +
Preference number: 3 (lower is better)
Translates to: LSLQRTKDFSYH*CWTKLCYICSS
Trigger: TGAGCTGCATATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGAAGGCTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTATGTACGCACACCCATaGTTAAGACTCTCACAAGAA +
Preference number: 3 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSMYAHP*LRLSQE
Trigger: TTCTTGTGAGAGTCTTAACAATGGGTGTGCGTACAT...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTCTGTCACCTGAGTTTTaGATCTTAGTGATTCCGACT +
Preference number: 3 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSLSPEF*ILVIPT
Trigger: AGTCGGAATCACTAAGATCAAAAACTCAGGTGACAG...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR TCA 72 bp TCTTTCTCCACATCTTTGCTAGCTTCTGCTGTCACCTaGGTTTTTGATCTTAGTGATTCCGACTGGTATGAG +
Preference number: 3 (lower is better)
Translates to: SFSTSLLASAVT*VFDLSDSDWYE
Trigger: CTCATACCAGTCGGAATCACTAAGATCAAAAACTCAGGTGACAGCAGAAGCTAGCAAAGATGTGGAGAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR TCA 72 bp TTCTCTCCACCCTTGAATTTCCCTACACTAAGGCATTaGGCCTTCAAAGGACAAAGGATTTCTCCTACCATT +
Preference number: 3 (lower is better)
Translates to: FSPPLNFPTLRH*AFKGQRISPTI
Trigger: AATGGTAGGAGAAATCCTTTGTCCTTTGAAGGCTCAATGCCTTAGTGTAGGGAAATTCAAGGGTGGAGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR-3UTR CAA 90 bp TCAAAGGACAAAGGATTTCTCCTACCATTGATGCTGGACAAAGCTCTGCTACATATGTACGCACACCCATaGTTAAGACTCTCACAAGAA +
Preference number: 3 (lower is better)
Translates to: SKDKGFLLPLMLDKALLHMYAHP*LRLSQE
Trigger: TTCTTGTGAGAGTCTTAACAATGGGTGTGCGTACAT...ATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CCA 72 bp TGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTaGATTTGTTGGCTATATATAGGATGGATTCCCAGG +
Preference number: 3 (lower is better)
Translates to: CQLELLGIHNSV*ICWLYIGWIPR
Trigger: CCTGGGAATCCATCCTATATATAGCCAACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CCA 72 bp ACCTTTTCTGTATCTATGCCTCTGTTGAAGTACATCTaGGTTCTTTCCAGCTTCTGGCTATTACAAATAAGG +
Preference number: 3 (lower is better)
Translates to: TFSVSMPLLKYI*VLSSFWLLQIR
Trigger: CCTTATTTGTAATAGCCAGAAGCTGGAAAGAACCCAGATGTACTTCAACAGAGGCATAGATACAGAAAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CCA 72 bp TGCTATGAACATAGTGTTATATGTTGGAGAATCTTTTaGGTATATGGCCAGGAGTATACCACTCCTATACCA +
Preference number: 3 (lower is better)
Translates to: CYEHSVICWRIF*VYGQEYTTPIP
Trigger: TGGTATAGGAGTGGTATACTCCTGGCCATATACCCAAAAGATTCTCCAACATATAACACTATGTTCATAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CAA 72 bp GGAGCGCATGCTCAGTCCAAACATCAGCCTCTGTATTaGTCATGTTCTGGCAGAGCCTCTCAGGAGACAGCT +
Preference number: 4 (lower is better)
Translates to: GAHAQSKHQPLY*SCSGRASQETA
Trigger: AGCTGTCTCCTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGCATGCGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAGTCCACGGTAGACAGTaGCTCTTCATGTATGAGCTG +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTVHGRQ*LFMYEL
Trigger: CAGCTCATACATGAAGAGTCACTGTCTACCGTGGAC...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCAGTCCACGGTAGACAGTaGCTCTTCATGTATGAGCTG +
Preference number: 4 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSVHGRQ*LFMYEL
Trigger: CAGCTCATACATGAAGAGTCACTGTCTACCGTGGAC...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAACAGGGTCCTCCAGTTaGTTCTGCTTCCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTTGSSS*FCFLHV
Trigger: CACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGT...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCAACAGGGTCCTCCAGTTaGTTCTGCTTCCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSTGSSS*FCFLHV
Trigger: CACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGT...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTTGATGTTGATGTGGCTTGAATaGCCTCTCCTTTGCTATTTC +
Preference number: 4 (lower is better)
Translates to: ATYAAQGMGPSMCAPWLMLMWLE*PLLCYF
Trigger: GAAATAGCAAAGGAGAGGTCATTCAAGCCACATCAA...CATCAACCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACATCTGCTTCCTTCATGTaGATGCACAGTCCAATGCAC +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTSASFM*MHSPMH
Trigger: GTGCATTGGACTGTGCATTCACATGAAGGAAGCAGA...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGACAATATGGGCCTCTGTaGGCCAATCACTGTAAAGTG +
Preference number: 4 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGQYGPL*ANHCKV
Trigger: CACTTTACAGTGATTGGCTCACAGAGGCCCATATTG...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GCTACATATGCAGCTCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTTGATGAATTTTGATGTGGCTTaGATGACCTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: ATYAAQGMGPSMCAPWLMNFDVA*MTSPLL
Trigger: TAGCAAAGGAGAGGTCATTCAAGCCACATCAAAATT...CATCAACCAAGGAGCACACATGGAGGGACCCATGCCTTGAGCTGCATATGTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGATCTGCTTCCTTCATGTaGATGCACAGTCCAATGCAC +
Preference number: 4 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGSASFM*MHSPMH
Trigger: GTGCATTGGACTGTGCATTCACATGAAGGAAGCAGA...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAAATCTCCATGTGTTGTaGTTGTTGTGGTGGGGACAA +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTNLHVL*LLWWGQ
Trigger: TTGTCCCCACCACAACAAGCACAACACATGGAGATT...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCATTTGAAAGTAGCAAATaGCATTCCTGTGAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSFESSK*HSCESW
Trigger: CCAGCTCTCACAGGAATGTCATTTGCTACTTTCAAA...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTACAGGGTCCTCCAGTTaGTTCTGCTTCCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSTGSSS*FCFLHV
Trigger: CACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGT...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTCAATATGGGCCTCTGTaGGCCAATCACTGTAAAGTG +
Preference number: 4 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSQYGPL*ANHCKV
Trigger: CACTTTACAGTGATTGGCTCACAGAGGCCCATATTG...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGATTGATGTGGCTTGAATaGCCTCTCCTTTGCTATTTC +
Preference number: 4 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGLMWLE*PLLCYF
Trigger: GAAATAGCAAAGGAGAGGTCATTCAAGCCACATCAA...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCGTCCACGGTAGACAGTaGCTCTTCATGTATGAGCTG +
Preference number: 4 (lower is better)
Translates to: TAISGSCQLELLGIHNSVVHGRQ*LFMYEL
Trigger: CAGCTCATACATGAAGAGTCACTGTCTACCGTGGAC...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACATATGATTGCAAACACTaGAATTATGGGTACCACTGC +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTYDCKH*NYGYHC
Trigger: GCAGTGGTACCCATAATTTCAGTGTTTGCAATCATA...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCATATGATTGCAAACACTaGAATTATGGGTACCACTGC +
Preference number: 4 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSYDCKH*NYGYHC
Trigger: GCAGTGGTACCCATAATTTCAGTGTTTGCAATCATA...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACATCTTTAAAGACACAGTaGTATGCACCACCATCATCA +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTSLKTQ*YAPPSS
Trigger: TGATGATGGTGGTGCATACCACTGTGTCTTTAAAGA...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CAA 72 bp GCTATATATAGGATGGATTCCCAGGTGGAGCAACCTTaGAATGGCCTTCCCTTCAGTCTCTGCTTCATAGTT +
Preference number: 4 (lower is better)
Translates to: AIYRMDSQVEQP*NGLPFSLCFIV
Trigger: AACTATGAAGCAGAGACTGAAGGGAAGGCCATTCAAAGGTTGCTCCACCTGGGAATCCATCCTATATATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GCTCAGTCCAAACATCAGCCTCTGTATTTGTCATGTTCTGGCAGAGCCTCTCAGCGATTGAGAAATAAATaGAATGCAGGAATACCACTG +
Preference number: 4 (lower is better)
Translates to: AQSKHQPLYLSCSGRASQRLRNK*NAGIPL
Trigger: CAGTGGTATTCCTGCATTTCATTTATTTCTCAATCG...CTGAGAGGCTCTGCCAGAACATGACAAATACAGAGGCTGATGTTTGGACTGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTCTGCTTCCTTCATGTaGATGCACAGTCCAATGCAC +
Preference number: 4 (lower is better)
Translates to: TAISGSCQLELLGIHNSVSASFM*MHSPMH
Trigger: GTGCATTGGACTGTGCATTCACATGAAGGAAGCAGA...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAACTCTTTGTTCTAGATaGAAAAAGAGCATGACTCCT +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTTLCSR*KKSMTP
Trigger: AGGAGTCATGCTCTTTTTGCATCTAGAACAAAGAGT...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCATTACGTAATTGCAGATaGACAAGAAGGATTGTTCCA +
Preference number: 4 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSLRNCR*TRRIVP
Trigger: TGGAACAATCCTTCTTGTGCATCTGCAATTACGTAA...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACATTACGTAATTGCAGATaGACAAGAAGGATTGTTCCA +
Preference number: 4 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTLRNCR*TRRIVP
Trigger: TGGAACAATCCTTCTTGTGCATCTGCAATTACGTAA...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CAA 72 bp CCTCTCAGGAGACAGCTATATCAGGTTCCTGTCAGCTaGAACTTCTTGGAATCCACAATAGTGTCTGGATTT +
Preference number: 4 (lower is better)
Translates to: PLRRQLYQVPVS*NFLESTIVSGF
Trigger: AAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGTCTCCTGAGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CAA 72 bp ATTGAGCCTTCAAAGGACAAAGGATTTCTCCTACCATaGATGCTGGACAAAGCTCTGCTACATATGCAGCTC +
Preference number: 4 (lower is better)
Translates to: IEPSKDKGFLLP*MLDKALLHMQL
Trigger: GAGCTGCATATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGAAGGCTCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
3UTR CAA 72 bp CTTCTCTCCACCCTTGAATTTCCCTACACTAAGGCATaGAGCCTTCAAAGGACAAAGGATTTCTCCTACCAT +
Preference number: 4 (lower is better)
Translates to: LLSTLEFPYTKA*SLQRTKDFSYH
Trigger: ATGGTAGGAGAAATCCTTTGTCCTTTGAAGGCTCAATGCCTTAGTGTAGGGAAATTCAAGGGTGGAGAGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTATCTGCTTCCTTCATGTaGATGCACAGTCCAATGCAC +
Preference number: 4 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVSASFM*MHSPMH
Trigger: GTGCATTGGACTGTGCATTCACATGAAGGAAGCAGA...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCAATCTCCATGTGTTGTaGTTGTTGTGGTGGGGACAA +
Preference number: 4 (lower is better)
Translates to: TAISGSCQLELLGIHNSVNLHVL*LLWWGQ
Trigger: TTGTCCCCACCACAACAAGCACAACACATGGAGATT...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCAGAACACAGTAAGTCATaGAGAAATCTATCATCACAA +
Preference number: 4 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSEHSKS*RNLSSQ
Trigger: TTGTGATGATAGATTTCTGCATGACTTACTGTGTTC...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CAA 72 bp CATGAGCACAGAGGAATTTCCCTGAACAGAGCACCATaGGTTTATGCTCTGAGATCAAGAAACAACAAATGG +
Preference number: 4 (lower is better)
Translates to: HEHRGISLNRAP*VYALRSRNNKW
Trigger: CCATTTGTTGTTTCTTGATCTCAGAGCATAAACCAATGGTGCTCTGTTCAGGGAAATTCCTCTGTGCTCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTAATTTTGATGTGGCTTaGATGACCTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSNFDVA*MTSPLL
Trigger: TAGCAAAGGAGAGGTCATTCAAGCCACATCAAAATT...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TCAAAGGACAAAGGATTTCTCCTACCATTGATGCTGGACAAAGCTCTGCTACATTTTGAAAGTAGCAAATaGCATTCCTGTGAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: SKDKGFLLPLMLDKALLHFESSK*HSCESW
Trigger: CCAGCTCTCACAGGAATGTCATTTGCTACTTTCAAA...ATGTAGCAGAGCTTTGTCCAGCATCAATGGTAGGAGAAATCCTTTGTCCTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAGTCCACGGTAGACAGTaGCTCTTCATGTATGAGCTG +
Preference number: 4 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIVHGRQ*LFMYEL
Trigger: CAGCTCATACATGAAGAGTCACTGTCTACCGTGGAC...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTAAATCTCCATGTGTTGTaGTTGTTGTGGTGGGGACAA +
Preference number: 4 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVNLHVL*LLWWGQ
Trigger: TTGTCCCCACCACAACAAGCACAACACATGGAGATT...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGACAGGGTCCTCCAGTTaGTTCTGCTTCCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKTGSSS*FCFLHV
Trigger: CACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGT...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTTCTTTAAAGACACAGTaGTATGCACCACCATCATCA +
Preference number: 4 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSSLKTQ*YAPPSS
Trigger: TGATGATGGTGGTGCATACCACTGTGTCTTTAAAGA...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
3UTR CAA 72 bp AGACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTaGGAATCCACAATAGTGTCTGGATTTGTTGGCTAT +
Preference number: 4 (lower is better)
Translates to: RQLYQVPVSLNF*ESTIVSGFVGY
Trigger: ATAGCCAACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGCAATATGGGCCTCTGTaGGCCAATCACTGTAAAGTG +
Preference number: 4 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKQYGPL*ANHCKV
Trigger: CACTTTACAGTGATTGGCTCACAGAGGCCCATATTG...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATACAATATGGGCCTCTGTaGGCCAATCACTGTAAAGTG +
Preference number: 4 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIQYGPL*ANHCKV
Trigger: CACTTTACAGTGATTGGCTCACAGAGGCCCATATTG...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTATTGATGTGGCTTGAATaGCCTCTCCTTTGCTATTTC +
Preference number: 4 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVLMWLE*PLLCYF
Trigger: GAAATAGCAAAGGAGAGGTCATTCAAGCCACATCAA...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTCGATTGAGAAATAAATaGAATGCAGGAATACCACTG +
Preference number: 4 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSRLRNK*NAGIPL
Trigger: CAGTGGTATTCCTGCATTTCATTTATTTCTCAATCG...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATAATCTCCATGTGTTGTaGTTGTTGTGGTGGGGACAA +
Preference number: 4 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNNLHVL*LLWWGQ
Trigger: TTGTCCCCACCACAACAAGCACAACACATGGAGATT...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTAAAAGACACAGTGGTATaGACCACCATCATCAACAGT +
Preference number: 4 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVKDTVV*TTIINS
Trigger: ACTGTTGATGATGGTGGTGCATACCACTGTGTCTTT...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTACTCTTTGTTCTAGATaGAAAAAGAGCATGACTCCT +
Preference number: 4 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSTLCSR*KKSMTP
Trigger: AGGAGTCATGCTCTTTTTGCATCTAGAACAAAGAGT...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTATGTGGTGGGGACAATTaGCAATTGAGTTCTACATTT +
Preference number: 4 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVCGGDN*QLSSTF
Trigger: AAATGTAGAACTCAATTGTCAATTGTCCCCACCACA...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTCGATTGAGAAATAAATaGAATGCAGGAATACCACTG +
Preference number: 4 (lower is better)
Translates to: QVPVSLNFLESTIVSGFVRLRNK*NAGIPL
Trigger: CAGTGGTATTCCTGCATTTCATTTATTTCTCAATCG...AACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCACTCTTTGTTCTAGATaGAAAAAGAGCATGACTCCT +
Preference number: 4 (lower is better)
Translates to: TAISGSCQLELLGIHNSVTLCSR*KKSMTP
Trigger: AGGAGTCATGCTCTTTTTGCATCTAGAACAAAGAGT...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTTTACGTAATTGCAGATaGACAAGAAGGATTGTTCCA +
Preference number: 4 (lower is better)
Translates to: QVPVSLNFLESTIVSGFVLRNCR*TRRIVP
Trigger: TGGAACAATCCTTCTTGTGCATCTGCAATTACGTAA...AACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAGGGACAATTGACAATTaGGTTCTACATTTCCACCCA +
Preference number: 4 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIGTIDN*VLHFHP
Trigger: TGGGTGGAAATGTAGAACTCAATTGTCAATTGTCCC...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATTGTGGTGGGGACAATTaGCAATTGAGTTCTACATTT +
Preference number: 4 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNCGGDN*QLSSTF
Trigger: AAATGTAGAACTCAATTGTCAATTGTCCCCACCACA...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGTTGATGTGGCTTGAATaGCCTCTCCTTTGCTATTTC +
Preference number: 4 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKLMWLE*PLLCYF
Trigger: GAAATAGCAAAGGAGAGGTCATTCAAGCCACATCAA...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGTTTGAAAGTAGCAAATaGCATTCCTGTGAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKFESSK*HSCESW
Trigger: CCAGCTCTCACAGGAATGTCATTTGCTACTTTCAAA...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATTATGATTGCAAACACTaGAATTATGGGTACCACTGC +
Preference number: 4 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNYDCKH*NYGYHC
Trigger: GCAGTGGTACCCATAATTTCAGTGTTTGCAATCATA...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCGAACACAGTAAGTCATaGAGAAATCTATCATCACAA +
Preference number: 4 (lower is better)
Translates to: TAISGSCQLELLGIHNSVEHSKS*RNLSSQ
Trigger: TTGTGATGATAGATTTCTGCATGACTTACTGTGTTC...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGAATTTTGATGTGGCTTaGATGACCTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKNFDVA*MTSPLL
Trigger: TAGCAAAGGAGAGGTCATTCAAGCCACATCAAAATT...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAAATTTTGATGTGGCTTaGATGACCTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSINFDVA*MTSPLL
Trigger: TAGCAAAGGAGAGGTCATTCAAGCCACATCAAAATT...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CCA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGTCTTTAAAGACACAGTaGTATGCACCACCATCATCA +
Preference number: 4 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKSLKTQ*YAPPSS
Trigger: TGATGATGGTGGTGCATACCACTGTGTCTTTAAAGA...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR TCA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGTGTGGTGGGGACAATTaGCAATTGAGTTCTACATTT +
Preference number: 4 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQCGGDN*QLSSTF
Trigger: AAATGTAGAACTCAATTGTCAATTGTCCCCACCACA...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATGAACACAGTAAGTCATaGAGAAATCTATCATCACAA +
Preference number: 4 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNEHSKS*RNLSSQ
Trigger: TTGTGATGATAGATTTCTGCATGACTTACTGTGTTC...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAACTCTTTGTTCTAGATaGAAAAAGAGCATGACTCCT +
Preference number: 4 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSITLCSR*KKSMTP
Trigger: AGGAGTCATGCTCTTTTTGCATCTAGAACAAAGAGT...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CCA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGTCTTTAAAGACACAGTaGTATGCACCACCATCATCA +
Preference number: 4 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQSLKTQ*YAPPSS
Trigger: TGATGATGGTGGTGCATACCACTGTGTCTTTAAAGA...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGTTACGTAATTGCAGATaGACAAGAAGGATTGTTCCA +
Preference number: 4 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQLRNCR*TRRIVP
Trigger: TGGAACAATCCTTCTTGTGCATCTGCAATTACGTAA...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR GCA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGGAACACAGTAAGTCATaGAGAAATCTATCATCACAA +
Preference number: 4 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQEHSKS*RNLSSQ
Trigger: TTGTGATGATAGATTTCTGCATGACTTACTGTGTTC...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCACACAGGGTCCTCCAGTaGCTTCTGCTTCCTTCATGT +
Preference number: 5 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSHRVLQ*LLLPSC
Trigger: ACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGTG...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACACACAGGGTCCTCCAGTaGCTTCTGCTTCCTTCATGT +
Preference number: 5 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTHRVLQ*LLLPSC
Trigger: ACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGTG...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGACACAGGGTCCTCCAGTaGCTTCTGCTTCCTTCATGT +
Preference number: 5 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGHRVLQ*LLLPSC
Trigger: ACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGTG...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp TCAAGGCATGGGTCCCTCCATGTGTGCTCCTTGGTTGATGGTTTAGTCCCTAGGAGGAATACCACTGCTTaGTTTAATATTGGGGAACGG +
Preference number: 5 (lower is better)
Translates to: SRHGSLHVCSLVDGLVPRRNTTA*FNIGER
Trigger: CCGTTCCCCAATATTAAACAAAGCAGTGGTATTCCT...CCTAGGGACTAAACCATCAACCAAGGAGCACACATGGAGGGACCCATGCCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAGGTATGAGATTGATGTaGGACACTATCACCACACAC +
Preference number: 5 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTGMRLM*DTITTH
Trigger: GTGTGTGGTGATAGTGTCCAACATCAATCTCATACC...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GCTCTTCTCTCCACCCTTGAATTTCCCTACACTAAGGCATTGAGCCTTCAAAGGGGTATGAGATTGATGTaGGACACTATCACCACACAC +
Preference number: 5 (lower is better)
Translates to: ALLSTLEFPYTKALSLQRGMRLM*DTITTH
Trigger: GTGTGTGGTGATAGTGTCCAACATCAATCTCATACC...CCTTTGAAGGCTCAATGCCTTAGTGTAGGGAAATTCAAGGGTGGAGAGAAGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAACAAGGAATACCACTGCTTaGTTTAATATTGGGGAACGG +
Preference number: 5 (lower is better)
Translates to: GHLIFDIGAKAIQWGRGTRNTTA*FNIGER
Trigger: CCGTTCCCCAATATTAAACAAAGCAGTGGTATTCCT...TGTTCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCATTGTGGTGGGGACAATaGACAATTGAGTTCTACATT +
Preference number: 5 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSLWWGQ*TIEFYI
Trigger: AATGTAGAACTCAATTGTCAATTGTCCCCACCACAA...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCAATCAAAGGTATGAGATaGATGTTGGACACTATCACC +
Preference number: 5 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSIKGMR*MLDTIT
Trigger: GGTGATAGTGTCCAACATCAATCTCATACCTTTGAT...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGAGATGCACAAGAAGGATaGTTCCACATACGATTGAGA +
Preference number: 5 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGDAQEG*FHIRLR
Trigger: TCTCAATCGTATGTGGAACAATCCTTCTTGTGCATC...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp TATGGTCACTTGATCTTTGACATAGGTGCTAAAGCTATCCAGTGGGGGAGGGGATTGTGGTGGGGACAATaGACAATTGAGTTCTACATT +
Preference number: 5 (lower is better)
Translates to: YGHLIFDIGAKAIQWGRGLWWGQ*TIEFYI
Trigger: AATGTAGAACTCAATTGTCAATTGTCCCCACCACAA...TCCCCTCCCCCACTGGATAGCTTTAGCACCTATGTCAAAGATCAAGTGACCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTGGTATGAGATTGATGTaGGACACTATCACCACACAC +
Preference number: 5 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSGMRLM*DTITTH
Trigger: GTGTGTGGTGATAGTGTCCAACATCAATCTCATACC...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GCCCCCACTAGCCCTGTGTGGTTAATTGTGTGGCATGTTTTCCTGATGTCTTCAGAAATCCTAAAATCATaGAAATATCTGTCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: APTSPVWLIVWHVFLMSSEILKS*KYLSAS
Trigger: GCTGGCTGACAGATATTTCAATGATTTTAGGATTTC...TGAAGACATCAGGAAAACATGCCACACAATTAACCACACAGGGCTAGTGGGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS TCA 90 bp TTTGCTATTTCTCCATTCCATATGAGGCTGTGGGAACCAACCGCCTaGATGACACTCCAACATCACACCTTTAATATTAGGCGTATGCAT +
Preference number: 5 (lower is better)
Translates to: FAISPFHMRLWEPTA*MTLQHHTFNIRRMH
Trigger: ATGCATACGCCTAATATTAAAGGTGTGATGTTGGAGTGTCATTCAGGCGGTTGGTTCCCACAGCCTCATATGGAATGGAGAAATAGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTATTGGGGAACGGTCTTaGAATCTAGGTACATGTTCA +
Preference number: 5 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSIGERS*NLGTCS
Trigger: TGAACATGTACCTAGATTCAAAGACCGTTCCCCAAT...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTGATGCACAAGAAGGATaGTTCCACATACGATTGAGA +
Preference number: 5 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSDAQEG*FHIRLR
Trigger: TCTCAATCGTATGTGGAACAATCCTTCTTGTGCATC...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS TCA 90 bp CATCACACCTTTAATATTAGGCGTATGCATGAGAATCTGTATGTCTaGGCTTGTGGCTGTGACCTTGACCTCTGTGATATGCTCTTCATA +
Preference number: 5 (lower is better)
Translates to: HHTFNIRRMHENLYV*ACGCDLDLCDMLFI
Trigger: TATGAAGAGCATATCACAGAGGTCAAGGTCACAGCCACAAGCTCAGACATACAGATTCTCATGCATACGCCTAATATTAAAGGTGTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGCTTGTGGCTGTGACCTaGACCTCTGTGATATGCTCT +
Preference number: 5 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKLVAVT*TSVICS
Trigger: AGAGCATATCACAGAGGTCAAGGTCACAGCCACAAG...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTGGATTTGTTTCTGTCAGCCAGCTGTaGTACAAGGAAAATAAGGAA +
Preference number: 5 (lower is better)
Translates to: QVPVSLNFLESTIVSGFVSVSQL*YKENKE
Trigger: TTCCTTATTTTCCTTGTACAACAGCTGGCTGACAGA...AACAAATCCAGACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp ACAGCTATATCAGGTTCCTGTCAGCTTGAACTTCTTGGAATCCACAATAGTGTCTCTGTCAGCCAGCTGTaGTACAAGGAAAATAAGGAA +
Preference number: 5 (lower is better)
Translates to: TAISGSCQLELLGIHNSVSVSQL*YKENKE
Trigger: TTCCTTATTTTCCTTGTACAACAGCTGGCTGACAGA...GACACTATTGTGGATTCCAAGAAGTTCAAGCTGACAGGAACCTGATATAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106564.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGCTTGTGGCTGTGACCTaGACCTCTGTGATATGCTCT +
Preference number: 5 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQLVAVT*TSVICS
Trigger: AGAGCATATCACAGAGGTCAAGGTCACAGCCACAAG...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTATCTGTCAGCCAGCTGTaGTACAAGGAAAATAAGGAA +
Preference number: 5 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVSVSQL*YKENKE
Trigger: TTCCTTATTTTCCTTGTACAACAGCTGGCTGACAGA...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CTGAGGAACTACCAGACTGATTTCCAGACAACTCTGGAAATGGAGGAATGTTCTGAAATCCTAAAATCATaGAAATATCTGTCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: LRNYQTDFQTTLEMEECSEILKS*KYLSAS
Trigger: GCTGGCTGACAGATATTTCAATGATTTTAGGATTTC...AGAACATTCCTCCATTTCCAGAGTTGTCTGGAAATCAGTCTGGTAGTTCCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTATTGTGGTGGGGACAATaGACAATTGAGTTCTACATT +
Preference number: 5 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVLWWGQ*TIEFYI
Trigger: AATGTAGAACTCAATTGTCAATTGTCCCCACCACAA...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAGAGCAATAGTGATAAAAAGACTACATGGTACTGGTACAGAGACAGGCAAGTAATCAAAGGTATGAGATaGATGTTGGACACTATCACC +
Preference number: 5 (lower is better)
Translates to: QSNSDKKTTWYWYRDRQVIKGMR*MLDTIT
Trigger: GGTGATAGTGTCCAACATCAATCTCATACCTTTGAT...TACTTGCCTGTCTCTGTACCAGTACCATGTAGTCTTTTTATCACTATTGCTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATATTGGGGAACGGTCTTaGAATCTAGGTACATGTTCA +
Preference number: 5 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNIGERS*NLGTCS
Trigger: TGAACATGTACCTAGATTCAAAGACCGTTCCCCAAT...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATAGGAATACCACTGCTTaGTTTAATATTGGGGAACGG +
Preference number: 5 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNRNTTA*FNIGER
Trigger: CCGTTCCCCAATATTAAACAAAGCAGTGGTATTCCT...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATTCTGTCAGCCAGCTGTaGTACAAGGAAAATAAGGAA +
Preference number: 5 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNSVSQL*YKENKE
Trigger: TTCCTTATTTTCCTTGTACAACAGCTGGCTGACAGA...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS TCA 90 bp GCAGATGCACAAGAAGGATTGTTCCACATACGATTGAGAAATAAATaGAATGCAGGAATACCACTGCTTTGTTTAATATTGGGGAACGGT +
Preference number: 5 (lower is better)
Translates to: ADAQEGLFHIRLRNK*NAGIPLLCLILGNG
Trigger: ACCGTTCCCCAATATTAAACAAAGCAGTGGTATTCCTGCATTTCATTTATTTCTCAATCGTATGTGGAACAATCCTTCTTGTGCATCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGGGTATGAGATTGATGTaGGACACTATCACCACACAC +
Preference number: 5 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQGMRLM*DTITTH
Trigger: GTGTGTGGTGATAGTGTCCAACATCAATCTCATACC...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATATCAAAGGTATGAGATaGATGTTGGACACTATCACC +
Preference number: 5 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNIKGMR*MLDTIT
Trigger: GGTGATAGTGTCCAACATCAATCTCATACCTTTGAT...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAATTGGGGAACGGTCTTaGAATCTAGGTACATGTTCA +
Preference number: 5 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIIGERS*NLGTCS
Trigger: TGAACATGTACCTAGATTCAAAGACCGTTCCCCAAT...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp GGTACAGAGCTAAACAAAATATTCTCAACTGAGGAATACCTAATGGCTAAGAAGATTGGGGAACGGTCTTaGAATCTAGGTACATGTTCA +
Preference number: 5 (lower is better)
Translates to: GTELNKIFSTEEYLMAKKIGERS*NLGTCS
Trigger: TGAACATGTACCTAGATTCAAAGACCGTTCCCCAAT...CTTCTTAGCCATTAGGTATTCCTCAGTTGAGAATATTTTGTTTAGCTCTGTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp TCTCTGATGACTAAGGATGTTGAACATTTCTTTAGTTGCTTCCAGGATAGCATAGATGCACAAGAAGGATaGTTCCACATACGATTGAGA +
Preference number: 5 (lower is better)
Translates to: SLMTKDVEHFFSCFQDSIDAQEG*FHIRLR
Trigger: TCTCAATCGTATGTGGAACAATCCTTCTTGTGCATC...TATGCTATCCTGGAAGCAACTAAAGAAATGTTCAACATCCTTAGTCATCAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp CAACCACAACATATATTCAGAGGTCCCAGTGCAGACTCATTAAGGCTTTATAATGAAATCCTAAAATCATaGAAATATCTGTCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: QPQHIFRGPSADSLRLYNEILKS*KYLSAS
Trigger: GCTGGCTGACAGATATTTCAATGATTTTAGGATTTC...ATTATAAAGCCTTAATGAGTCTGCACTGGGACCTCTGAATATATGTTGTGGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS GCA 90 bp TTGTTTAATATTGGGGAACGGTCTTTGAATCTAGGTACATGTTCATaGAATCTGAAGTATATCAAAGGTATGAGATTGATGTTGGACACT +
Preference number: 5 (lower is better)
Translates to: LFNIGERSLNLGTCS*NLKYIKGMRLMLDT
Trigger: AGTGTCCAACATCAATCTCATACCTTTGATATACTTCAGATTGCATGAACATGTACCTAGATTCAAAGACCGTTCCCCAATATTAAACAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS-3UTR CAA 90 bp ATTGTTAAGACTCTCACAAGAAGAACAAGCCTAACAACCACAACATATATTCAGGAAATCCTAAAATCATaGAAATATCTGTCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: IVKTLTRRTSLTTTTYIQEILKS*KYLSAS
Trigger: GCTGGCTGACAGATATTTCAATGATTTTAGGATTTC...CTGAATATATGTTGTGGTTGTTAGGCTTGTTCTTCTTGTGAGAGTCTTAACAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CAA 72 bp ACGGTTCCGAAACCAGCGAATCTCCATGTGTTGTGCTaGTTGTGGTGGGGACAATTGACAATTGAGTTCTAC +
Preference number: 6 (lower is better)
Translates to: TVPKPANLHVLC*LWWGQLTIEFY
Trigger: GTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGCTGGTTTCGGAACCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS GCA 72 bp ATAACGGTTCCGAAACCAGCGAATCTCCATGTGTTGTaGTTGTTGTGGTGGGGACAATTGACAATTGAGTTC +
Preference number: 6 (lower is better)
Translates to: ITVPKPANLHVL*LLWWGQLTIEF
Trigger: GAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGCTGGTTTCGGAACCGTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CCA 72 bp CCGAAACCAGCGAATCTCCATGTGTTGTGCTTGTTGTaGTGGGGACAATTGACAATTGAGTTCTACATTTCC +
Preference number: 6 (lower is better)
Translates to: PKPANLHVLCLL*WGQLTIEFYIS
Trigger: GGAAATGTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGCTGGTTTCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CCA 72 bp AAACCAGCGAATCTCCATGTGTTGTGCTTGTTGTGGTaGGGACAATTGACAATTGAGTTCTACATTTCCACC +
Preference number: 6 (lower is better)
Translates to: KPANLHVLCLLW*GQLTIEFYIST
Trigger: GGTGGAAATGTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGCTGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CAA 72 bp GTTCCGAAACCAGCGAATCTCCATGTGTTGTGCTTGTaGTGGTGGGGACAATTGACAATTGAGTTCTACATT +
Preference number: 6 (lower is better)
Translates to: VPKPANLHVLCL*WWGQLTIEFYI
Trigger: AATGTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGCTGGTTTCGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CAA 72 bp CCAAGGATAATTTCTCTTGTAGCAGGTACCCTCAGATaGATCAGACTCACACTGATCATTGTCCACGGTAGA +
Preference number: 6 (lower is better)
Translates to: PRIISLVAGTLR*IRLTLIIVHGR
Trigger: TCTACCGTGGACAATGATCAGTGTGAGTCTGATCAATCTGAGGGTACCTGCTACAAGAGAAATTATCCTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS TCA 72 bp TCACAGGGTCCTCCAGTTGCTTCTGCTTCCTTCATGTaGATGCACAGTCCAATGCACCACTTTTTATTAAAT +
Preference number: 6 (lower is better)
Translates to: SQGPPVASASFM*MHSPMHHFLLN
Trigger: ATTTAATAAAAAGTGGTGCATTGGACTGTGCATTCACATGAAGGAAGCAGAAGCAACTGGAGGACCCTGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CCA 72 bp ATCACTGTAAAGTGTCCTGAACTCAGTGCTACCATCTaGAGGAGGCATAAGACAACACAGTATGAAGTAAGT +
Preference number: 6 (lower is better)
Translates to: ITVKCPELSATI*RRHKTTQYEVS
Trigger: ACTTACTTCATACTGTGTTGTCTTATGCCTCCTCCAGATGGTAGCACTGAGTTCAGGACACTTTACAGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS TCA 72 bp TTTAATATTAGGCGTATGCATGAGAATCTGTATGTCTaGGCTTGTGGCTGTGACCTTGACCTCTGTGATATG +
Preference number: 6 (lower is better)
Translates to: FNIRRMHENLYV*ACGCDLDLCDM
Trigger: CATATCACAGAGGTCAAGGTCACAGCCACAAGCTCAGACATACAGATTCTCATGCATACGCCTAATATTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CAA 90 bp CTAGGTACATGTTCATGCAATCTGAAGTATATCAAAGGTATGAGATaGATGTTGGACACTATCACCACACACAGGATCACACTAATATCT +
Preference number: 6 (lower is better)
Translates to: LGTCSCNLKYIKGMR*MLDTITTHRITLIS
Trigger: AGATATTAGTGTGATCCTGTGTGTGGTGATAGTGTCCAACATCAATCTCATACCTTTGATATACTTCAGATTGCATGAACATGTACCTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS TCA 72 bp ATGCAAAAAGAGCATGACTCCTATGATTGCAAACACTaGAATTATGGGTACCACTGCAATAATAATCCAAGG +
Preference number: 6 (lower is better)
Translates to: MQKEHDSYDCKH*NYGYHCNNNPR
Trigger: CCTTGGATTATTATTGCAGTGGTACCCATAATTTCAGTGTTTGCAATCATAGGAGTCATGCTCTTTTTGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS GCA 72 bp ATTGGGGAACGGTCTTTGAATCTAGGTACATGTTCATaGAATCTGAAGTATATCAAAGGTATGAGATTGATG +
Preference number: 6 (lower is better)
Translates to: IGERSLNLGTCS*NLKYIKGMRLM
Trigger: CATCAATCTCATACCTTTGATATACTTCAGATTGCATGAACATGTACCTAGATTCAAAGACCGTTCCCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CAA 72 bp TGCAATCTGAAGTATATCAAAGGTATGAGATTGATGTaGGACACTATCACCACACACAGGATCACACTAATA +
Preference number: 6 (lower is better)
Translates to: CNLKYIKGMRLM*DTITTHRITLI
Trigger: TATTAGTGTGATCCTGTGTGTGGTGATAGTGTCCAACATCAATCTCATACCTTTGATATACTTCAGATTGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS CAA 90 bp AAATGCAGGAATACCACTGCTTTGTTTAATATTGGGGAACGGTCTTaGAATCTAGGTACATGTTCATGCAATCTGAAGTATATCAAAGGT +
Preference number: 6 (lower is better)
Translates to: KCRNTTALFNIGERS*NLGTCSCNLKYIKG
Trigger: ACCTTTGATATACTTCAGATTGCATGAACATGTACCTAGATTCAAAGACCGTTCCCCAATATTAAACAAAGCAGTGGTATTCCTGCATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS GCA 72 bp TTCATAGAATTCACCATCTTTAAAGACACAGTGGTATaGACCACCATCATCAACAGTTACATTAAGAATCCT +
Preference number: 6 (lower is better)
Translates to: FIEFTIFKDTVV*TTIINSYIKNP
Trigger: AGGATTCTTAATGTAACTGTTGATGATGGTGGTGCATACCACTGTGTCTTTAAAGATGGTGAATTCTATGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2
CDS GCA 72 bp GAATCTGAAATAGAAACTTTGTTACGTAATTGCAGATaGACAAGAAGGATTGTTCCACATACGATTGAGAAA +
Preference number: 6 (lower is better)
Translates to: ESEIETLLRNCR*TRRIVPHTIEK
Trigger: TTTCTCAATCGTATGTGGAACAATCCTTCTTGTGCATCTGCAATTACGTAACAAAGTTTCTATTTCAGATTC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069769.9
ENSMUST00000106564.8
ENSMUST00000106565.8
ENSMUST00000106566.2