Pregenerated sensors for SKINT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070868Ensembl transcript IDs: ENSMUST00000038455.12, ENSMUST00000170945.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTTGCCAAGATTTCATCTaGCTTAGAGTTGGACAAGTC | + |
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Preference number: 2 (lower is better) Translates to: GEQPFVTLFIPPEGGISSCQDFI*LRVGQV Trigger: GACTTGTCCAACTCTAAGTCAGATGAAATCTTGGCA...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR TCA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAACAATACATATATGCTaGAAACCAACCATAGACCCG | + |
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Preference number: 2 (lower is better) Translates to: VSTTRGEQPFVTLFIPPETIHIC*KPTIDP Trigger: CGGGTCTATGGTTGGTTTTCAGCATATATGTATTGT...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTTTTCTAAATAATCTGTaGTCCTTTAGTGGAGGTAGC | + |
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Preference number: 2 (lower is better) Translates to: GEQPFVTLFIPPEGGISSFLNNL*SFSGGS Trigger: GCTACCTCCACTAAAGGATCACAGATTATTTAGAAA...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR TCA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGTGTACAAACCATTGTaGGTTCATATGTGTAGCTAC | + |
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Preference number: 2 (lower is better) Translates to: VSTTRGEQPFVTLFIPPEVYKPL*VHMCSY Trigger: GTAGCTACACATATGAACTCACAATGGTTTGTACAC...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAATTTCCTCACATAAGTaGACTTTTAGGGTTAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: VSTTRGEQPFVTLFIPPEISSHK*TFRVRS Trigger: ACTCCTAACCCTAAAAGTGCACTTATGTGAGGAAAT...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR CAA 90 bp | TTTGGCTTTTCATTCAGGACAATTTGTGCTTCCAAAATATGTTTGTaGTGTGGCCATCCACTCCAGCATGAGCAACTTATTGGCAGCTAT | + |
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Preference number: 2 (lower is better) Translates to: FGFSFRTICASKICL*CGHPLQHEQLIGSY Trigger: ATAGCTGCCAATAAGTTGCTCATGCTGGAGTGGATGGCCACACAACAAACATATTTTGGAAGCACAAATTGTCCTGAATGAAAAGCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTGTGCTTCCAAAATATGTTTGTTGTGTGGCCATCCACTCCAGCATGAGACAATACATATATGCTaGAAACCAACCATAGACCCG | + |
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Preference number: 2 (lower is better) Translates to: TICASKICLLCGHPLQHETIHIC*KPTIDP Trigger: CGGGTCTATGGTTGGTTTTCAGCATATATGTATTGT...CTCATGCTGGAGTGGATGGCCACACAACAAACATATTTTGGAAGCACAAATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR GCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGCTACTACAATTCTTCTaGTCCATCTTTTGCAGGATT | + |
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Preference number: 2 (lower is better) Translates to: TSFPLLYYSQSNPFISPLLLQFF*SIFCRI Trigger: AATCCTGCAAAAGATGGAGCAGAAGAATTGTAGTAG...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR GCA 90 bp | ACAATTTGTGCTTCCAAAATATGTTTGTTGTGTGGCCATCCACTCCAGCATGAGATTTCCTCACATAAGTaGACTTTTAGGGTTAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: TICASKICLLCGHPLQHEISSHK*TFRVRS Trigger: ACTCCTAACCCTAAAAGTGCACTTATGTGAGGAAAT...CTCATGCTGGAGTGGATGGCCACACAACAAACATATTTTGGAAGCACAAATTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR TCA 72 bp | CCTGTGCAATCAAGGAGGAGTTTCTACAACACGTGGTaGGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: PVQSRRSFYNTW*AAFCDPLHPSR Trigger: TCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAACTCCTCCTTGATTGCACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR CAA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTACCCTCCTACTGAAGTaGGCAAAAGCAATACAATGG | + |
|
Preference number: 3 (lower is better) Translates to: GEQPFVTLFIPPEGGISSTLLLK*AKAIQW Trigger: CCATTGTATTGCTTTTGCCAACTTCAGTAGGAGGGT...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR CAA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTGCTTCCAAAATATGTTaGTTGTGTGGCCATCCACTC | + |
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Preference number: 3 (lower is better) Translates to: GEQPFVTLFIPPEGGISSASKIC*LCGHPL Trigger: GAGTGGATGGCCACACAACAAACATATTTTGGAAGC...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR CAA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAACTTCTGCTCCATCTTTaGCAGGATTCTCCAGTTCAA | + |
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Preference number: 3 (lower is better) Translates to: VSTTRGEQPFVTLFIPPELLLHL*QDSPVQ Trigger: TTGAACTGGAGAATCCTGCAAAAGATGGAGCAGAAG...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR CAA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAACCCTCCTACTGAAGTaGGCAAAAGCAATACAATGG | + |
|
Preference number: 3 (lower is better) Translates to: VSTTRGEQPFVTLFIPPETLLLK*AKAIQW Trigger: CCATTGTATTGCTTTTGCCAACTTCAGTAGGAGGGT...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR-3UTR CAA 90 bp | TGCAATCAAGGAGGAGTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCCCTTGTAATTATCTCTaGTTTCTGGCTTTTGTACTC | + |
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Preference number: 3 (lower is better) Translates to: CNQGGVSTTRGEQPFVTLPCNYL*FLAFVL Trigger: GAGTACAAAAGCCAGAAACAAGAGATAATTACAAGG...GAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAACTCCTCCTTGATTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR GCA 72 bp | TGGTGTCCTCCACTCCTCTGGCTACTACAATTCTTCTaGTCCATCTTTTGCAGGATTCTCCAGTTCAAATTA | + |
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Preference number: 3 (lower is better) Translates to: WCPPLLWLLQFF*SIFCRILQFKL Trigger: TAATTTGAACTGGAGAATCCTGCAAAAGATGGAGCAGAAGAATTGTAGTAGCCAGAGGAGTGGAGGACACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR GCA 72 bp | ATTTTCACTTCAGTCTTTATAATCCCCTATGAGCCCTaGTTAGTTGATTCTGTGACCCATGTTCTCATGGTG | + |
|
Preference number: 3 (lower is better) Translates to: IFTSVFIIPYEP*LVDSVTHVLMV Trigger: CACCATGAGAACATGGGTCACAGAATCAACTAAGCAGGGCTCATAGGGGATTATAAAGACTGAAGTGAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR TCA 72 bp | TCTGGGGAATTATATGTCTTGATGTCCATGGAATATTaGTTCCCAGACAGTATTGCTATAATTCCTTCACAT | + |
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Preference number: 3 (lower is better) Translates to: SGELYVLMSMEY*FPDSIAIIPSH Trigger: ATGTGAAGGAATTATAGCAATACTGTCTGGGAATCAATATTCCATGGACATCAAGACATATAATTCCCCAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR TCA 72 bp | TCTGACATGAATATAGATCTGGGGAATTATATGTCTTaGTGTCCATGGAATATTGATTCCCAGACAGTATTG | + |
|
Preference number: 3 (lower is better) Translates to: SDMNIDLGNYMS*CPWNIDSQTVL Trigger: CAATACTGTCTGGGAATCAATATTCCATGGACATCAAGACATATAATTCCCCAGATCTATATTCATGTCAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR TCA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTAGGGAACCAACCTCTTaGATGACACTCAAGCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: GEQPFVTLFIPPEGGISSREPTS*MTLKHH Trigger: GTGATGCTTGAGTGTCATTCAAGAGGTTGGTTCCCT...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR TCA 90 bp | TGCAATCAAGGAGGAGTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCCTTTCTCCAATGATGTaGTCTCTGAGAGCAGCTACC | + |
|
Preference number: 4 (lower is better) Translates to: CNQGGVSTTRGEQPFVTLLSPMM*SLRAAT Trigger: GGTAGCTGCTCTCAGAGATCACATCATTGGAGAAAG...GAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAACTCCTCCTTGATTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAATTGTGCATTTTGTGGTaGGGACAACTGACAACTGAG | + |
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Preference number: 4 (lower is better) Translates to: VSTTRGEQPFVTLFIPPELCILW*GQLTTE Trigger: CTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAA...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR GCA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGAGATAGTTTCTCCATaGAGGTCTTTACCATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: VSTTRGEQPFVTLFIPPEEIVSP*RSLPFL Trigger: CAGGAATGGTAAAGACCTGCATGGAGAAACTATCTC...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR TCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGAGGGAACCAACCTCTTaGATGACACTCAAGCATCAC | + |
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Preference number: 4 (lower is better) Translates to: TSFPLLYYSQSNPFISPLREPTS*MTLKHH Trigger: GTGATGCTTGAGTGTCATTCAAGAGGTTGGTTCCCT...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | GGTGTCCTCCACTCCTCTGGCTACTACAATTCTTCTGCTCCATCTTTTGCAGGATTTTCATCCTGTGACTaGGATTTTGATGTAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GVLHSSGYYNSSAPSFAGFSSCD*DFDVAG Trigger: TCCAGCTACATCAAAATCCCAGTCACAGGATGAAAA...TCCTGCAAAAGATGGAGCAGAAGAATTGTAGTAGCCAGAGGAGTGGAGGACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTTCTCTCATATTCTCTTaGCATAACCATATGGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: GEQPFVTLFIPPEGGISSSLIFS*HNHMGF Trigger: AAAGCCCATATGGTTATGCCAAGAGAATATGAGAGA...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR GCA 90 bp | TGCAATCAAGGAGGAGTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCACTCATGCATACCATTaGATTCTTTCTCCAATGATG | + |
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Preference number: 4 (lower is better) Translates to: CNQGGVSTTRGEQPFVTLTHAYH*ILSPMM Trigger: CATCATTGGAGAAAGAATGCAATGGTATGCATGAGT...GAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAACTCCTCCTTGATTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS-3UTR TCA 90 bp | CAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAACAGGCTGTGGTGGGGACAACTaGCAACTGAGTTCAAGGATT | + |
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Preference number: 4 (lower is better) Translates to: QSNPFISPLQLTLQKQTGCGGDN*QLSSRI Trigger: AATCCTTGAACTCAGTTGTCAGTTGTCCCCACCACA...GCCTGTTTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | TGCAATCAAGGAGGAGTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTCTTTGAAGACACAATaGTATGATCCATCATCATCA | + |
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Preference number: 4 (lower is better) Translates to: CNQGGVSTTRGEQPFVTLSLKTQ*YDPSSS Trigger: TGATGATGATGGATCATACCATTGTGTCTTCAAAGA...GAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAACTCCTCCTTGATTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR TCA 90 bp | TACTCCCAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAATGTGGTGGGGACAACTaGCAACTGAGTTCAAGGATT | + |
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Preference number: 4 (lower is better) Translates to: YSQSNPFISPLQLTLQKQCGGDN*QLSSRI Trigger: AATCCTTGAACTCAGTTGTCAGTTGTCCCCACCACA...TTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTGGGAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR GCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGAATCTCCATTTGTTGTaGATTTTGTGGTGGGGACAA | + |
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Preference number: 4 (lower is better) Translates to: TSFPLLYYSQSNPFISPLNLHLL*ILWWGQ Trigger: TTGTCCCCACCACAAAATGCACAACAAATGGAGATT...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR GCA 90 bp | ACAATTTGTGCTTCCAAAATATGTTTGTTGTGTGGCCATCCACTCCAGCATGAGGAGATAGTTTCTCCATaGAGGTCTTTACCATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TICASKICLLCGHPLQHEEIVSP*RSLPFL Trigger: CAGGAATGGTAAAGACCTGCATGGAGAAACTATCTC...CTCATGCTGGAGTGGATGGCCACACAACAAACATATTTTGGAAGCACAAATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGTTTTCATCCTGTGACTaGGATTTTGATGTAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: TSFPLLYYSQSNPFISPLFSSCD*DFDVAG Trigger: TCCAGCTACATCAAAATCCCAGTCACAGGATGAAAA...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR TCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGTATAATCTTTATATCTaGGCTTGTGGCAGTGACCTT | + |
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Preference number: 4 (lower is better) Translates to: TSFPLLYYSQSNPFISPLYNLYI*ACGSDL Trigger: AAGGTCACTGCCACAAGCTCAGATATAAAGATTATA...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR GCA 90 bp | ACAATTTGTGCTTCCAAAATATGTTTGTTGTGTGGCCATCCACTCCAGCATGAGAATCTCCATTTGTTGTaGATTTTGTGGTGGGGACAA | + |
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Preference number: 4 (lower is better) Translates to: TICASKICLLCGHPLQHENLHLL*ILWWGQ Trigger: TTGTCCCCACCACAAAATGCACAACAAATGGAGATT...CTCATGCTGGAGTGGATGGCCACACAACAAACATATTTTGGAAGCACAAATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGTCTCTCATATTCTCTTaGCATAACCATATGGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TSFPLLYYSQSNPFISPLSLIFS*HNHMGF Trigger: AAAGCCCATATGGTTATGCCAAGAGAATATGAGAGA...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | ACCAGTTTCCCCTTACTCTACTACTCCCAATCTAACCCATTTATCTCTCCTCTGTCTTTGAAGACACAATaGTATGATCCATCATCATCA | + |
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Preference number: 4 (lower is better) Translates to: TSFPLLYYSQSNPFISPLSLKTQ*YDPSSS Trigger: TGATGATGATGGATCATACCATTGTGTCTTCAAAGA...CAGAGGAGAGATAAATGGGTTAGATTGGGAGTAGTAGAGTAAGGGGAAACTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR CAA 72 bp | TCATTCAGGACAATTTGTGCTTCCAAAATATGTTTGTaGTGTGGCCATCCACTCCAGCATGAGCAACTTATT | + |
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Preference number: 4 (lower is better) Translates to: SFRTICASKICL*CGHPLQHEQLI Trigger: AATAAGTTGCTCATGCTGGAGTGGATGGCCACACAACAAACATATTTTGGAAGCACAAATTGTCCTGAATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CCA 90 bp | ATTTTTACATTCATTCTTCTCTCATACAATACTCCTGACCAGTTTCCCCTTACTGAAGATAGGAAGTCATaGAGTAGGGTATCATCACAC | + |
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Preference number: 4 (lower is better) Translates to: IFTFILLSYNTPDQFPLTEDRKS*SRVSSH Trigger: GTGTGATGATACCCTACTCCATGACTTCCTATCTTC...AGTAAGGGGAAACTGGTCAGGAGTATTGTATGAGAGAAGAATGAATGTAAAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| 3UTR CAA 72 bp | TCTTCTCTGATTGCCAAGATTTCATCTGACTTAGAGTaGGACAAGTCTTATTCATGGTGTACAAACCATTGT | + |
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Preference number: 4 (lower is better) Translates to: SSLIAKISSDLE*DKSYSWCTNHC Trigger: ACAATGGTTTGTACACCATGAATAAGACTTGTCCAACTCTAAGTCAGATGAAATCTTGGCAATCAGAGAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| 3UTR CAA 72 bp | TTACAGATCCATCTCTTTATCCTTAACCACCTAAATTaGTGTCTTTTGGCTTTTCATTCAGGACAATTTGTG | + |
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Preference number: 4 (lower is better) Translates to: LQIHLFILNHLN*CLLAFHSGQFV Trigger: CACAAATTGTCCTGAATGAAAAGCCAAAAGACACAAATTTAGGTGGTTAAGGATAAAGAGATGGATCTGTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTGTCCGCTCCACATACTaGGAGATAGTTTCTCCATGC | + |
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Preference number: 5 (lower is better) Translates to: GEQPFVTLFIPPEGGISSVRSTY*EIVSPC Trigger: GCATGGAGAAACTATCTCCAAGTATGTGGAGCGGAC...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | GGTGTCCTCCACTCCTCTGGCTACTACAATTCTTCTGCTCCATCTTTTGCAGGAGTCCGCTCCACATACTaGGAGATAGTTTCTCCATGC | + |
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Preference number: 5 (lower is better) Translates to: GVLHSSGYYNSSAPSFAGVRSTY*EIVSPC Trigger: GCATGGAGAAACTATCTCCAAGTATGTGGAGCGGAC...TCCTGCAAAAGATGGAGCAGAAGAATTGTAGTAGCCAGAGGAGTGGAGGACACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS GCA 90 bp | CCTAATGGGGCAAGGACTGGCCTCTCTAAGCCAGTAATTGTGAACTaGTCTGAACTCAGTACTAACATCTGGAGGACGCACAAGACAACA | + |
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Preference number: 5 (lower is better) Translates to: PNGARTGLSKPVIVN*SELSTNIWRTHKTT Trigger: TGTTGTCTTGTGCGTCCTCCAGATGTTAGTACTGAGTTCAGAGCAGTTCACAATTACTGGCTTAGAGAGGCCAGTCCTTGCCCCATTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS GCA 90 bp | AGGTTCTGTATAGCGATTCCGGAACCAGCGAATCTCCATTTGTTGTaGATTTTGTGGTGGGGACAACTGACAACTGAGTTCAAGGATTCC | + |
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Preference number: 5 (lower is better) Translates to: RFCIAIPEPANLHLL*ILWWGQLTTEFKDS Trigger: GGAATCCTTGAACTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACAGAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | GGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGGTGGAATAAGCAGTGTCATGTTGAACAATTaGTTTTCATCCTGTGACTGG | + |
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Preference number: 5 (lower is better) Translates to: GEQPFVTLFIPPEGGISSVMLNN*FSSCDW Trigger: CCAGTCACAGGATGAAAACAAATTGTTCAACATGAC...ACTGCTTATTCCACCTTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | GTTTCTACAACACGTGGTGAGCAGCCTTTTGTGACCCTCTTCATCCCTCCAGAAGTCATGTTGAACAATTaGTTTTCATCCTGTGACTGG | + |
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Preference number: 5 (lower is better) Translates to: VSTTRGEQPFVTLFIPPEVMLNN*FSSCDW Trigger: CCAGTCACAGGATGAAAACAAATTGTTCAACATGAC...TTCTGGAGGGATGAAGAGGGTCACAAAAGGCTGCTCACCACGTGTTGTAGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS TCA 90 bp | ATTGCTATCTCTCCATTCCATATGAGGCTGAGGGAACCAACCTCTTaGATGACACTCAAGCATCACACCTTTAATATTCGGGGGATGCAT | + |
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Preference number: 5 (lower is better) Translates to: IAISPFHMRLREPTS*MTLKHHTFNIRGMH Trigger: ATGCATCCCCCGAATATTAAAGGTGTGATGCTTGAGTGTCATTCAAGAGGTTGGTTCCCTCAGCCTCATATGGAATGGAGAGATAGCAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | TACTCCCAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAGCGAATCTCCATTTGTaGTGCATTTTGTGGTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: YSQSNPFISPLQLTLQKQANLHL*CILWWG Trigger: TCCCCACCACAAAATGCACAACAAATGGAGATTCGC...TTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTGGGAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | CAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAACAGGCGGAATGACCTGTCCATaGCTATCTCTCCATTCCATA | + |
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Preference number: 5 (lower is better) Translates to: QSNPFISPLQLTLQKQTGGMTCP*LSLHSI Trigger: TATGGAATGGAGAGATAGCAATGGACAGGTCATTCC...GCCTGTTTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS TCA 90 bp | CATCACACCTTTAATATTCGGGGGATGCATTATAATCTTTATATCTaGGCTTGTGGCAGTGACCTTGACCTCTGTGATATGCTCTTCATA | + |
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Preference number: 5 (lower is better) Translates to: HHTFNIRGMHYNLYI*ACGSDLDLCDMLFI Trigger: TATGAAGAGCATATCACAGAGGTCAAGGTCACTGCCACAAGCTCAGATATAAAGATTATAATGCATCCCCCGAATATTAAAGGTGTGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | ATTTTTACATTCATTCTTCTCTCATACAATACTCCTGACCAGTTTCCCCTTACTGCGAATCTCCATTTGTaGTGCATTTTGTGGTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: IFTFILLSYNTPDQFPLTANLHL*CILWWG Trigger: TCCCCACCACAAAATGCACAACAAATGGAGATTCGC...AGTAAGGGGAAACTGGTCAGGAGTATTGTATGAGAGAAGAATGAATGTAAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS TCA 90 bp | GATATGCTCTTCATAGAATATACCATCTTTGAAGACACAATGGTATaGTCCATCATCATCAACTGTCACTTTAAAGACCCTGAGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: DMLFIEYTIFEDTMV*SIIINCHFKDPEGH Trigger: GTGACCCTCAGGGTCTTTAAAGTGACAGTTGATGATGATGGATCATACCATTGTGTCTTCAAAGATGGTATATTCTATGAAGAGCATATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | CAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAACAGGCGTAAGTAAATTGAGCTaGAGGTTAAACACAATCACC | + |
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Preference number: 5 (lower is better) Translates to: QSNPFISPLQLTLQKQTGVSKLS*RLNTIT Trigger: GGTGATTGTGTTTAACCTCAAGCTCAATTTACTTAC...GCCTGTTTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | TACTCCCAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAATGTATGAGATGTTGTaGAAGATAGGAAGTCATGGA | + |
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Preference number: 5 (lower is better) Translates to: YSQSNPFISPLQLTLQKQMYEML*KIGSHG Trigger: TCCATGACTTCCTATCTTCAACAACATCTCATACAT...TTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTGGGAGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | TACTCCCAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAACCATGTATGAGATGTaGTTGAAGATAGGAAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: YSQSNPFISPLQLTLQKQTMYEM*LKIGSH Trigger: ATGACTTCCTATCTTCAACAACATCTCATACATGGT...TTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTGGGAGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS-3UTR CAA 90 bp | TACTCCCAATCTAACCCATTTATCTCTCCTCTGCAACTAACTCTTCAGAAACAAAACTCATGCATACCATaGCATTCTTTCTCCAATGAT | + |
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Preference number: 5 (lower is better) Translates to: YSQSNPFISPLQLTLQKQNSCIP*HSFSND Trigger: ATCATTGGAGAAAGAATGCAATGGTATGCATGAGTT...TTGTTTCTGAAGAGTTAGTTGCAGAGGAGAGATAAATGGGTTAGATTGGGAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS GCA 72 bp | GCAAGGACTGGCCTCTCTAAGCCAGTAATTGTGAACTaGTCTGAACTCAGTACTAACATCTGGAGGACGCAC | + |
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Preference number: 6 (lower is better) Translates to: ARTGLSKPVIVN*SELSTNIWRTH Trigger: GTGCGTCCTCCAGATGTTAGTACTGAGTTCAGAGCAGTTCACAATTACTGGCTTAGAGAGGCCAGTCCTTGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CCA 72 bp | CCGGAACCAGCGAATCTCCATTTGTTGTGCATTTTGTaGTGGGGACAACTGACAACTGAGTTCAAGGATTCC | + |
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Preference number: 6 (lower is better) Translates to: PEPANLHLLCIL*WGQLTTEFKDS Trigger: GGAATCCTTGAACTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 90 bp | CACAGGTTCTGTATAGCGATTCCGGAACCAGCGAATCTCCATTTGTaGTGCATTTTGTGGTGGGGACAACTGACAACTGAGTTCAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: HRFCIAIPEPANLHL*CILWWGQLTTEFKD Trigger: ATCCTTGAACTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACAGAACCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 90 bp | GTACACAGGTTCTGTATAGCGATTCCGGAACCAGCGAATCTCCATTaGTTGTGCATTTTGTGGTGGGGACAACTGACAACTGAGTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: VHRFCIAIPEPANLH*LCILWWGQLTTEFK Trigger: CTTGAACTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACAGAACCTGTGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS GCA 72 bp | ATAGCGATTCCGGAACCAGCGAATCTCCATTTGTTGTaGATTTTGTGGTGGGGACAACTGACAACTGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: IAIPEPANLHLL*ILWWGQLTTEF Trigger: GAACTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 72 bp | TGTATAGCGATTCCGGAACCAGCGAATCTCCATTTGTaGTGCATTTTGTGGTGGGGACAACTGACAACTGAG | + |
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Preference number: 6 (lower is better) Translates to: CIAIPEPANLHL*CILWWGQLTTE Trigger: CTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 72 bp | ATTCCGGAACCAGCGAATCTCCATTTGTTGTGCATTTaGTGGTGGGGACAACTGACAACTGAGTTCAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: IPEPANLHLLCI*WWGQLTTEFKD Trigger: ATCCTTGAACTCAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 72 bp | TTCTGTATAGCGATTCCGGAACCAGCGAATCTCCATTaGTTGTGCATTTTGTGGTGGGGACAACTGACAACT | + |
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Preference number: 6 (lower is better) Translates to: FCIAIPEPANLH*LCILWWGQLTT Trigger: AGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 90 bp | CCTTTTCCAATGTCATGTTTTAGGAGTTCTGTCCGCTCCACATACTaGGAGATAGTTTCTCCATGCAGGTCTTTACCATTCCTGTACAGG | + |
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Preference number: 6 (lower is better) Translates to: PFPMSCFRSSVRSTY*EIVSPCRSLPFLYR Trigger: CCTGTACAGGAATGGTAAAGACCTGCATGGAGAAACTATCTCCAAGTATGTGGAGCGGACAGAACTCCTAAAACATGACATTGGAAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS TCA 72 bp | TCTCCATTCCATATGAGGCTGAGGGAACCAACCTCTTaGATGACACTCAAGCATCACACCTTTAATATTCGG | + |
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Preference number: 6 (lower is better) Translates to: SPFHMRLREPTS*MTLKHHTFNIR Trigger: CCGAATATTAAAGGTGTGATGCTTGAGTGTCATTCAAGAGGTTGGTTCCCTCAGCCTCATATGGAATGGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS TCA 72 bp | ACTCATGCATACCATTGCATTCTTTCTCCAATGATGTaGTCTCTGAGAGCAGCTACCATGTATGAGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: THAYHCILSPMM*SLRAATMYEML Trigger: CAACATCTCATACATGGTAGCTGCTCTCAGAGATCACATCATTGGAGAAAGAATGCAATGGTATGCATGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS TCA 72 bp | TTTAATATTCGGGGGATGCATTATAATCTTTATATCTaGGCTTGTGGCAGTGACCTTGACCTCTGTGATATG | + |
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Preference number: 6 (lower is better) Translates to: FNIRGMHYNLYI*ACGSDLDLCDM Trigger: CATATCACAGAGGTCAAGGTCACTGCCACAAGCTCAGATATAAAGATTATAATGCATCCCCCGAATATTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CCA 72 bp | CTGTGTCTTATTGCATCATCTTCTCTCATATTCTCTTaGCATAACCATATGGGCTTTGGAACAGTTTTTATG | + |
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Preference number: 6 (lower is better) Translates to: LCLIASSSLIFS*HNHMGFGTVFM Trigger: CATAAAAACTGTTCCAAAGCCCATATGGTTATGCCAAGAGAATATGAGAGAAGATGATGCAATAAGACACAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS CAA 72 bp | TGTAGGCCAACATCAGCAAAAAGGTTCATTGTCATGTaGAACAATTTGTTTTCATCCTGTGACTGGGATTTT | + |
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Preference number: 6 (lower is better) Translates to: CRPTSAKRFIVM*NNLFSSCDWDF Trigger: AAAATCCCAGTCACAGGATGAAAACAAATTGTTCAACATGACAATGAACCTTTTTGCTGATGTTGGCCTACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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| CDS TCA 72 bp | ATGCAAAATAAGCATGGATCCTATAATTGCAATCACTaGACTCATGCATACCATTGCATTCTTTCTCCAATG | + |
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Preference number: 6 (lower is better) Translates to: MQNKHGSYNCNH*THAYHCILSPM Trigger: CATTGGAGAAAGAATGCAATGGTATGCATGAGTTCAGTGATTGCAATTATAGGATCCATGCTTATTTTGCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170945.2 |
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| CDS TCA 72 bp | TTCATAGAATATACCATCTTTGAAGACACAATGGTATaGTCCATCATCATCAACTGTCACTTTAAAGACCCT | + |
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Preference number: 6 (lower is better) Translates to: FIEYTIFEDTMV*SIIINCHFKDP Trigger: AGGGTCTTTAAAGTGACAGTTGATGATGATGGATCATACCATTGTGTCTTCAAAGATGGTATATTCTATGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038455.12 ENSMUST00000170945.2 |
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