Pregenerated sensors for SKINT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034359Ensembl transcript IDs: ENSMUST00000058791.14, ENSMUST00000106560.10, ENSMUST00000186969.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGAGCGCCATTGGGAGTATGTaGTGCCATTCTTGGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: PELRSCLHQISLWPYMGSAIGSM*CHSWAG Trigger: ACCTGCCCAAGAATGGCACCACATACTCCCAATGGC...GCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| 3UTR-3UTR CCA 90 bp | TCTATATATAAGGCCTGGGCTATTCAAGGGCCTTATATAAATAAAATCACATCGTTAGTCCATGAGTCCTaGGAAATATGTGTGATCCAA | + |
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Preference number: 2 (lower is better) Translates to: SIYKAWAIQGPYINKITSLVHES*EICVIQ Trigger: TTGGATCACACATATTTCCCAGGACTCATGGACTAA...CGATGTGATTTTATTTATATAAGGCCCTTGAATAGCCCAGGCCTTATATATAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| 3UTR-3UTR CCA 90 bp | TCATATTATACAACTCCCATCACCAGTCATCTCTTTAAATGCTTTTACTTCCACCAACAGGAAAATACATaGTTCAAGTGGTTTAGCGAC | + |
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Preference number: 2 (lower is better) Translates to: SYYTTPITSHLFKCFYFHQQENT*FKWFSD Trigger: GTCGCTAAACCACTTGAACCATGTATTTTCCTGTTG...GTGGAAGTAAAAGCATTTAAAGAGATGACTGGTGATGGGAGTTGTATAATATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| 3UTR CCA 72 bp | CCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTaGCCCTATATGGGGAGCATTTTCTTGACTGATGAT | + |
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Preference number: 3 (lower is better) Translates to: PELRSCLHQISL*PYMGSIFLTDD Trigger: ATCATCAGTCAAGAAAATGCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| 3UTR GCA 72 bp | GAGTTATCTAGGAAAAAGAAACCTGAACTAAGAAGTTaGCTTCATCAGATTAGCCTTTGGCCCTATATGGGG | + |
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Preference number: 3 (lower is better) Translates to: ELSRKKKPELRS*LHQISLWPYMG Trigger: CCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTTCTTTTTCCTAGATAACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| 3UTR TCA 72 bp | ATGAAAAACTTCACTAAAATGTTCAATTCAACCTTGTaGTTCTGCAGTATGATTGAGGATATAGCTCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: MKNFTKMFNSTL*FCSMIEDIALA Trigger: AGCCAGAGCTATATCCTCAATCATACTGCAGAATCACAAGGTTGAATTGAACATTTTAGTGAAGTTTTTCAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| 3UTR CCA 72 bp | CTTGCAATTTCCATTCTACTGTCTATATATAAGGCCTaGGCTATTCAAGGGCCTTATATAAATAAAATCACA | + |
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Preference number: 3 (lower is better) Translates to: LAISILLSIYKA*AIQGPYINKIT Trigger: TGTGATTTTATTTATATAAGGCCCTTGAATAGCCCAGGCCTTATATATAGACAGTAGAATGGAAATTGCAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR TCA 90 bp | AAACCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGGAAGACACAGTGGTATaGCCCATCATCATCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KPELRSCLHQISLWPYMGEDTVV*PIIISC Trigger: ACAGCTGATGATGATGGGTCATACCACTGTGTCTTC...CCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | AGGAAAAAGAAACCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTCTCTCCATTCCATATaGGGCTGTGGGAACCAACCT | + |
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Preference number: 4 (lower is better) Translates to: RKKKPELRSCLHQISLWPSLHSI*GCGNQP Trigger: AGGTTGGTTCCCACAGCCTCATATGGAATGGAGAGA...GGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTTCTTTTTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR CCA 90 bp | CCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGAGCCTCTGTGTTACCATCTaGAGGAAGTGTAAGACAACA | + |
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Preference number: 4 (lower is better) Translates to: PELRSCLHQISLWPYMGSLCVTI*RKCKTT Trigger: TGTTGTCTTACACTTCCTCCAGATGGTAACACAGAG...GCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | CTCAACTCTTGTGGCGTGACCAACAGGAAAATACATGGTTCAAGTGGTTTAGCGGTAAGCCAGTCACTGTaGATTTTTCTGAACTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: LNSCGVTNRKIHGSSGLAVSQSL*IFLNSV Trigger: CACAGAGTTCAGAAAAATTCACAGTGACTGGCTTAC...CGCTAAACCACTTGAACCATGTATTTTCCTGTTGGTCACGCCACAAGAGTTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR TCA 90 bp | CTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGAGCATTTTCAGAACTCTCCAACTTTaGAGACACAGTGGTATGACC | + |
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Preference number: 4 (lower is better) Translates to: LRSCLHQISLWPYMGSIFRTLQL*RHSGMT Trigger: GGTCATACCACTGTGTCTTCAAAGTTGGAGAGTTCT...GAAAATGCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | GGAAATATGTGTGATCCAATGGTCATGACTCATAAGTTGAGGACCTCTACAGTATCTCTCCATTCCATATaGGGCTGTGGGAACCAACCT | + |
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Preference number: 4 (lower is better) Translates to: GNMCDPMVMTHKLRTSTVSLHSI*GCGNQP Trigger: AGGTTGGTTCCCACAGCCTCATATGGAATGGAGAGA...TACTGTAGAGGTCCTCAACTTATGAGTCATGACCATTGGATCACACATATTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR CCA 90 bp | GGAAATATGTGTGATCCAATGGTCATGACTCATAAGTTGAGGACCTCTACAGTAAACATTTCCACCCAATaGTGCCAAGACTGGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: GNMCDPMVMTHKLRTSTVNISTQ*CQDWPL Trigger: CAGAGGCCAGTCTTGGCACCATTGGGTGGAAATGTT...TACTGTAGAGGTCCTCAACTTATGAGTCATGACCATTGGATCACACATATTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR CCA 90 bp | CCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGAGCACTTTGAAGACACAGTaGTATGACCCATCATCATCA | + |
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Preference number: 4 (lower is better) Translates to: PELRSCLHQISLWPYMGSTLKTQ*YDPSSS Trigger: TGATGATGATGGGTCATACCACTGTGTCTTCAAAGT...GCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | CTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGAGCATTTTCGTAAGCCAGTCACTGTaGATTTTTCTGAACTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: LRSCLHQISLWPYMGSIFVSQSL*IFLNSV Trigger: CACAGAGTTCAGAAAAATTCACAGTGACTGGCTTAC...GAAAATGCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | AGGAAAAAGAAACCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTGTGGCGGAGACAACTaGCAACTCAGTTCAACATTT | + |
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Preference number: 4 (lower is better) Translates to: RKKKPELRSCLHQISLWPCGGDN*QLSSTF Trigger: AAATGTTGAACTGAGTTGTCAGTTGTCTCCGCCACA...GGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTTCTTTTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | AGTTCTCAACTCTTGTGGCGTGACCAACAGGAAAATACATGGTTCAAGTGGTTTAGAACTCTCCAACTTTaGAGACACAGTGGTATGACC | + |
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Preference number: 4 (lower is better) Translates to: SSQLLWRDQQENTWFKWFRTLQL*RHSGMT Trigger: GGTCATACCACTGTGTCTTCAAAGTTGGAGAGTTCT...AAACCACTTGAACCATGTATTTTCCTGTTGGTCACGCCACAAGAGTTGAGAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR CCA 90 bp | AAAAAGAAACCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATAACATTTCCACCCAATaGTGCCAAGACTGGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KKKPELRSCLHQISLWPYNISTQ*CQDWPL Trigger: CAGAGGCCAGTCTTGGCACCATTGGGTGGAAATGTT...ATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTTCTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR TCA 90 bp | AGTATGATTGAGGATATAGCTCTGGCTTACAATAGTGCAGCAGTTCTCAACTCTTGTGGCGGAGACAACTaGCAACTCAGTTCAACATTT | + |
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Preference number: 4 (lower is better) Translates to: SMIEDIALAYNSAAVLNSCGGDN*QLSSTF Trigger: AAATGTTGAACTGAGTTGTCAGTTGTCTCCGCCACA...AGAGTTGAGAACTGCTGCACTATTGTAAGCCAGAGCTATATCCTCAATCATACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR TCA 90 bp | CTCAACTCTTGTGGCGTGACCAACAGGAAAATACATGGTTCAAGTGGTTTAGCGGGGTCATTGTCATGTTaGACAATTTGTTTTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: LNSCGVTNRKIHGSSGLAGSLSC*TICFHP Trigger: AGGATGAAAACAAATTGTTCAACATGACAATGACCC...CGCTAAACCACTTGAACCATGTATTTTCCTGTTGGTCACGCCACAAGAGTTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR TCA 90 bp | AAACCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGGGGTCATTGTCATGTTaGACAATTTGTTTTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: KPELRSCLHQISLWPYMGGSLSC*TICFHP Trigger: AGGATGAAAACAAATTGTTCAACATGACAATGACCC...CCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTT 41% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR CCA 90 bp | AGTATGATTGAGGATATAGCTCTGGCTTACAATAGTGCAGCAGTTCTCAACTCTCTCTGTGTTACCATCTaGAGGAAGTGTAAGACAACA | + |
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Preference number: 4 (lower is better) Translates to: SMIEDIALAYNSAAVLNSLCVTI*RKCKTT Trigger: TGTTGTCTTACACTTCCTCCAGATGGTAACACAGAG...AGAGTTGAGAACTGCTGCACTATTGTAAGCCAGAGCTATATCCTCAATCATACT 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR GCA 90 bp | AGTATGATTGAGGATATAGCTCTGGCTTACAATAGTGCAGCAGTTCTCAACTCTCCTCTTTGTTTTAGATaGAAAATGAGCATGACTCCT | + |
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Preference number: 4 (lower is better) Translates to: SMIEDIALAYNSAAVLNSPLCFR*KMSMTP Trigger: AGGAGTCATGCTCATTTTGCATCTAAAACAAAGAGG...AGAGTTGAGAACTGCTGCACTATTGTAAGCCAGAGCTATATCCTCAATCATACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| 3UTR CAA 72 bp | GGAAATATGTGTGATCCAATGGTCATGACTCATAAGTaGAGGACCTCTACAGTATATAGGACTACTTCATCT | + |
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Preference number: 4 (lower is better) Translates to: GNMCDPMVMTHK*RTSTVYRTTSS Trigger: AGATGAAGTAGTCCTATATACTGTAGAGGTCCTCAACTTATGAGTCATGACCATTGGATCACACATATTTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS TCA 90 bp | AACCAACGAATCTCCATATGCTGTGCTTGTTGTGGCGGAGACAACTaGCAACTCAGTTCAACATTTCCACCCAATGGTGCCAAGACTGGC | + |
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Preference number: 5 (lower is better) Translates to: NQRISICCACCGGDN*QLSSTFPPNGAKTG Trigger: GCCAGTCTTGGCACCATTGGGTGGAAATGTTGAACTGAGTTGTCAGTTGTCTCCGCCACAACAAGCACAGCATATGGAGATTCGTTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS TCA 90 bp | TTCCACCCAATGGTGCCAAGACTGGCCTCTGTAAGCCAGTCACTGTaGATTTTTCTGAACTCTGTGTTACCATCTGGAGGAAGTGTAAGA | + |
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Preference number: 5 (lower is better) Translates to: FHPMVPRLASVSQSL*IFLNSVLPSGGSVR Trigger: TCTTACACTTCCTCCAGATGGTAACACAGAGTTCAGAAAAATTCACAGTGACTGGCTTACAGAGGCCAGTCTTGGCACCATTGGGTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS-3UTR CAA 90 bp | CCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGAGCCTTGTGGCTGTGACCTaGATTTCTGTGATATGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PELRSCLHQISLWPYMGSLVAVT*ISVICS Trigger: AGAGCATATCACAGAAATCAAGGTCACAGCCACAAG...GCTCCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS-3UTR CAA 90 bp | AGTATGATTGAGGATATAGCTCTGGCTTACAATAGTGCAGCAGTTCTCAACTCTCTTGTGGCTGTGACCTaGATTTCTGTGATATGCTCT | + |
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Preference number: 5 (lower is better) Translates to: SMIEDIALAYNSAAVLNSLVAVT*ISVICS Trigger: AGAGCATATCACAGAAATCAAGGTCACAGCCACAAG...AGAGTTGAGAACTGCTGCACTATTGTAAGCCAGAGCTATATCCTCAATCATACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS-3UTR CAA 90 bp | AAACCTGAACTAAGAAGTTGCCTTCATCAGATTAGCCTTTGGCCCTATATGGGGGTCATGTTGAACAATTaGTTTTCATCCTGTGAATGG | + |
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Preference number: 5 (lower is better) Translates to: KPELRSCLHQISLWPYMGVMLNN*FSSCEW Trigger: CCATTCACAGGATGAAAACAAATTGTTCAACATGAC...CCCCATATAGGGCCAAAGGCTAATCTGATGAAGGCAACTTCTTAGTTCAGGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058791.14 |
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| CDS CCA 90 bp | AGAAGGGTCATTGTCATGTTGAACAATTTGTTTTCATCCTGTGAATaGGCCTTTGATGTAGCTGGAATGATATTTCCCTTGTTGTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: RRVIVMLNNLFSSCE*AFDVAGMIFPLLSL Trigger: GAGAGACAACAAGGGAAATATCATTCCAGCTACATCAAAGGCCCATTCACAGGATGAAAACAAATTGTTCAACATGACAATGACCCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS-3UTR CAA 90 bp | AGTATGATTGAGGATATAGCTCTGGCTTACAATAGTGCAGCAGTTCTCAACTCTGTCATGTTGAACAATTaGTTTTCATCCTGTGAATGG | + |
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Preference number: 5 (lower is better) Translates to: SMIEDIALAYNSAAVLNSVMLNN*FSSCEW Trigger: CCATTCACAGGATGAAAACAAATTGTTCAACATGAC...AGAGTTGAGAACTGCTGCACTATTGTAAGCCAGAGCTATATCCTCAATCATACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106560.10 |
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| CDS TCA 72 bp | ATCTCCATATGCTGTGCTTGTTGTGGCGGAGACAACTaGCAACTCAGTTCAACATTTCCACCCAATGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: ISICCACCGGDN*QLSSTFPPNGA Trigger: GGCACCATTGGGTGGAAATGTTGAACTGAGTTGTCAGTTGTCTCCGCCACAACAAGCACAGCATATGGAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CAA 90 bp | CCCTTTCCAATGTCATCTTTCAGGAGTTCAGTCCGCTCCACATACTaGGAGATAGTTTCTCCATGCAGGTCTTTACCATTCCTGTACAGG | + |
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Preference number: 6 (lower is better) Translates to: PFPMSSFRSSVRSTY*EIVSPCRSLPFLYR Trigger: CCTGTACAGGAATGGTAAAGACCTGCATGGAGAAACTATCTCCAAGTATGTGGAGCGGACTGAACTCCTGAAAGATGACATTGGAAAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS TCA 72 bp | ATGGTGCCAAGACTGGCCTCTGTAAGCCAGTCACTGTaGATTTTTCTGAACTCTGTGTTACCATCTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: MVPRLASVSQSL*IFLNSVLPSGG Trigger: TCCTCCAGATGGTAACACAGAGTTCAGAAAAATTCACAGTGACTGGCTTACAGAGGCCAGTCTTGGCACCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CAA 72 bp | GCGATTTCGAAACCAACGAATCTCCATATGCTGTGCTaGTTGTGGCGGAGACAACTGACAACTCAGTTCAAC | + |
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Preference number: 6 (lower is better) Translates to: AISKPTNLHMLC*LWRRQLTTQFN Trigger: GTTGAACTGAGTTGTCAGTTGTCTCCGCCACAACAAGCACAGCATATGGAGATTCGTTGGTTTCGAAATCGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CCA 72 bp | TCGAAACCAACGAATCTCCATATGCTGTGCTTGTTGTaGCGGAGACAACTGACAACTCAGTTCAACATTTCC | + |
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Preference number: 6 (lower is better) Translates to: SKPTNLHMLCLL*RRQLTTQFNIS Trigger: GGAAATGTTGAACTGAGTTGTCAGTTGTCTCCGCCACAACAAGCACAGCATATGGAGATTCGTTGGTTTCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CCA 72 bp | GTCACTGTGAATTTTTCTGAACTCTGTGTTACCATCTaGAGGAAGTGTAAGACAACACAGAGAAGTACTCCT | + |
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Preference number: 6 (lower is better) Translates to: VTVNFSELCVTI*RKCKTTQRSTP Trigger: AGGAGTACTTCTCTGTGTTGTCTTACACTTCCTCCAGATGGTAACACAGAGTTCAGAAAAATTCACAGTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CAA 90 bp | TGGGAGCTGGCTTCAATAAGAAGGGTCATTGTCATGTTGAACAATTaGTTTTCATCCTGTGAATGGGCCTTTGATGTAGCTGGAATGATA | + |
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Preference number: 6 (lower is better) Translates to: WELASIRRVIVMLNN*FSSCEWAFDVAGMI Trigger: TATCATTCCAGCTACATCAAAGGCCCATTCACAGGATGAAAACAAATTGTTCAACATGACAATGACCCTTCTTATTGAAGCCAGCTCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS TCA 72 bp | TTCATAGAACTCTCCAACTTTGAAGACACAGTGGTATaGCCCATCATCATCAGCTGTCAGTTTAAAGATCCT | + |
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Preference number: 6 (lower is better) Translates to: FIELSNFEDTVV*PIIISCQFKDP Trigger: AGGATCTTTAAACTGACAGCTGATGATGATGGGTCATACCACTGTGTCTTCAAAGTTGGAGAGTTCTATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CAA 72 bp | GCTTCAATAAGAAGGGTCATTGTCATGTTGAACAATTaGTTTTCATCCTGTGAATGGGCCTTTGATGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: ASIRRVIVMLNN*FSSCEWAFDVA Trigger: AGCTACATCAAAGGCCCATTCACAGGATGAAAACAAATTGTTCAACATGACAATGACCCTTCTTATTGAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS CCA 72 bp | ATTGTCATGTTGAACAATTTGTTTTCATCCTGTGAATaGGCCTTTGATGTAGCTGGAATGATATTTCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: IVMLNNLFSSCE*AFDVAGMIFPL Trigger: CAAGGGAAATATCATTCCAGCTACATCAAAGGCCCATTCACAGGATGAAAACAAATTGTTCAACATGACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058791.14 ENSMUST00000106560.10 ENSMUST00000186969.2 |
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| CDS TCA 72 bp | ATATCTTCAAGCCACAAAGTGTCCAATTCAAAATGTTaGTCTGAAACTGGGACTCTTTGTTTTAGATGCAAA | + |
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Preference number: 6 (lower is better) Translates to: ISSSHKVSNSKC*SETGTLCFRCK Trigger: TTTGCATCTAAAACAAAGAGTCCCAGTTTCAGATCAACATTTTGAATTGGACACTTTGTGGCTTGAAGATAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186969.2 |
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