Pregenerated sensors for SKINT11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057977Ensembl transcript IDs: ENSMUST00000079915.10, ENSMUST00000145797.8, ENSMUST00000151810.2, ENSMUST00000164297.8
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGGAATTATATTCCCCTTGCTGTCTCTCCATGTCATCTCAGCAGGTaGGAACAAACTTTCTGCAGTACACTCTACCAGTACCCCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: WNYIPLAVSPCHLSR*EQTFCSTLYQYPFF Trigger: GAAGAAGGGGTACTGGTAGAGTGTACTGCAGAAAGTTTGTTCCCACCTGCTGAGATGACATGGAGAGACAGCAAGGGGAATATAATTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS GCA 90 bp | TGCTCTTCAAACACAATAACCCAGCTCTATCCTGAGAGTCAAATGTaGTTGAGGGTGGAATTATATTCCCCTTGCTGTCTCTCCATGTCA | + |
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Preference number: 5 (lower is better) Translates to: CSSNTITQLYPESQM*LRVELYSPCCLSMS Trigger: TGACATGGAGAGACAGCAAGGGGAATATAATTCCACCCTCAAGCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTGTTTGAAGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS CCA 90 bp | TCTGCAGTACACTCTACCAGTACCCCTTCTTCTGTATCTGGAATCTaGGTGTTTATCTGTATATCCAAGCTCATTACTTGGGTGAGTACT | + |
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Preference number: 5 (lower is better) Translates to: SAVHSTSTPSSVSGI*VFICISKLITWVST Trigger: AGTACTCACCCAAGTAATGAGCTTGGATATACAGATAAACACCCAGATTCCAGATACAGAAGAAGGGGTACTGGTAGAGTGTACTGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000145797.8 ENSMUST00000164297.8 |
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| CDS CCA 90 bp | CAAACTTTCTGCAGTACACTCTACCAGTACCCCTTCTTCTGTATCTaGAATCTGGGTGTTTATCTGTATATCCAAGCTCATTACTTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: QTFCSTLYQYPFFCI*NLGVYLYIQAHYLG Trigger: ACCCAAGTAATGAGCTTGGATATACAGATAAACACCCAGATTCCAGATACAGAAGAAGGGGTACTGGTAGAGTGTACTGCAGAAAGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000145797.8 ENSMUST00000164297.8 |
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| CDS CCA 90 bp | GTATCTGGAATCTGGGTGTTTATCTGTATATCCAAGCTCATTACTTaGGTGAGTACTGTGATCTTTAGGAGAATGCAGACCATGAAGAAT | + |
|
Preference number: 5 (lower is better) Translates to: VSGIWVFICISKLIT*VSTVIFRRMQTMKN Trigger: ATTCTTCATGGTCTGCATTCTCCTAAAGATCACAGTACTCACCCAAGTAATGAGCTTGGATATACAGATAAACACCCAGATTCCAGATAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145797.8 ENSMUST00000164297.8 |
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| CDS CCA 72 bp | ATTCCCCTTGCTGTCTCTCCATGTCATCTCAGCAGGTaGGAACAAACTTTCTGCAGTACACTCTACCAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: IPLAVSPCHLSR*EQTFCSTLYQY Trigger: GTACTGGTAGAGTGTACTGCAGAAAGTTTGTTCCCACCTGCTGAGATGACATGGAGAGACAGCAAGGGGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS GCA 72 bp | TCTCCATGTCATCTCAGCAGGTGGGAACAAACTTTCTaGAGTACACTCTACCAGTACCCCTTCTTCTGTATC | + |
|
Preference number: 6 (lower is better) Translates to: SPCHLSRWEQTF*STLYQYPFFCI Trigger: GATACAGAAGAAGGGGTACTGGTAGAGTGTACTGCAGAAAGTTTGTTCCCACCTGCTGAGATGACATGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS CAA 72 bp | ACAATAACCCAGCTCTATCCTGAGAGTCAAATGTGCTaGAGGGTGGAATTATATTCCCCTTGCTGTCTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: TITQLYPESQMC*RVELYSPCCLS Trigger: GGAGAGACAGCAAGGGGAATATAATTCCACCCTCAAGCACATTTGACTCTCAGGATAGAGCTGGGTTATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS GCA 72 bp | AACACAATAACCCAGCTCTATCCTGAGAGTCAAATGTaGTTGAGGGTGGAATTATATTCCCCTTGCTGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: NTITQLYPESQM*LRVELYSPCCL Trigger: GAGACAGCAAGGGGAATATAATTCCACCCTCAAGCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS CAA 90 bp | TCTTCAAACACAATAACCCAGCTCTATCCTGAGAGTCAAATGTGCTaGAGGGTGGAATTATATTCCCCTTGCTGTCTCTCCATGTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: SSNTITQLYPESQMC*RVELYSPCCLSMSS Trigger: AGATGACATGGAGAGACAGCAAGGGGAATATAATTCCACCCTCAAGCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTGTTTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS CCA 72 bp | AGTGGACAGCAAGCTCTTGTTTTATTACTCCAAACTTaGGTGAGTACTGTGATCTTTAGGAGAATGCAGACC | + |
|
Preference number: 6 (lower is better) Translates to: SGQQALVLLLQT*VSTVIFRRMQT Trigger: GGTCTGCATTCTCCTAAAGATCACAGTACTCACCCAAGTTTGGAGTAATAAAACAAGAGCTTGCTGTCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079915.10 |
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| CDS CCA 72 bp | CACTCTACCAGTACCCCTTCTTCTGTATCTGGAATCTaGGTGTTTATCTGTATATCCAAGCTCATTACTTGG | + |
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Preference number: 6 (lower is better) Translates to: HSTSTPSSVSGI*VFICISKLITW Trigger: CCAAGTAATGAGCTTGGATATACAGATAAACACCCAGATTCCAGATACAGAAGAAGGGGTACTGGTAGAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000145797.8 ENSMUST00000164297.8 |
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| CDS CCA 72 bp | TGCAGTACACTCTACCAGTACCCCTTCTTCTGTATCTaGAATCTGGGTGTTTATCTGTATATCCAAGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: CSTLYQYPFFCI*NLGVYLYIQAH Trigger: ATGAGCTTGGATATACAGATAAACACCCAGATTCCAGATACAGAAGAAGGGGTACTGGTAGAGTGTACTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145797.8 ENSMUST00000151810.2 ENSMUST00000164297.8 |
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| CDS CCA 72 bp | ATCTGGGTGTTTATCTGTATATCCAAGCTCATTACTTaGGTGAGTACTGTGATCTTTAGGAGAATGCAGACC | + |
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Preference number: 6 (lower is better) Translates to: IWVFICISKLIT*VSTVIFRRMQT Trigger: GGTCTGCATTCTCCTAAAGATCACAGTACTCACCCAAGTAATGAGCTTGGATATACAGATAAACACCCAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145797.8 ENSMUST00000164297.8 |
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