Pregenerated sensors for SKINT10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048766Ensembl transcript IDs: ENSMUST00000060327.4, ENSMUST00000068851.6
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACAGATGTGCATGTTTAACAATAATAATCAATAGAGTATCAGTTTaGGCAGGGGTACATGGAAAGCATCGAAAGGAAAGTACCTGGGAG | + |
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Preference number: 1 (lower is better) Translates to: YRCACLTIIINRVSV*AGVHGKHRKESTWE Trigger: CTCCCAGGTACTTTCCTTTCGATGCTTTCCATGTACCCCTGCTCAAACTGATACTCTATTGATTATTATTGTTAAACATGCACATCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR TCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGTCCAATCTTAAGGGCTaGAGTGGGTTGAAGCTATCC | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKESNLKG*SGLKLS Trigger: GGATAGCTTCAACCCACTTCAGCCCTTAAGATTGGA...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR TCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGCAAAAATGTCAGCTTaGCTTTGCTCCATCTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEAKMSA*LCSICV Trigger: GACACAGATGGAGCAAAGTCAAGCTGACATTTTTGC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGCTCAAAGTCATGTTTaGAAAGATCCATGCTCATGG | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEAQSHV*KDPCSW Trigger: CCATGAGCATGGATCTTTCCAAACATGACTTTGAGC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR GCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGTTTGGAAAGATCCATaGTCATGGAAGGTAAGTATG | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEVWKDP*SWKVSM Trigger: CATACTTACCTTCCATGAGCATGGATCTTTCCAAAC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGTACCCCTTCTGTATCTaGAACCTGAATGTTAATCTG | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEYPFCI*NLNVNL Trigger: CAGATTAACATTCAGGTTCCAGATACAGAAGGGGTA...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR TCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGTCTGTATCTGGAACCTaGATGTTAATCTGTATATCC | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKESVSGT*MLICIS Trigger: GGATATACAGATTAACATTCAGGTTCCAGATACAGA...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR TCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGCAAGTAATAGGACTTTaGACTCTGTTCTTCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEQVIGL*TLFFRR Trigger: TCTTCTGAAGAACAGAGTTCAAAGTCCTATTACTTG...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR TCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGAAACAGGTTTTCCTTTaGGACAACAGAAATCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEKQVFL*DNRNQA Trigger: TGCTTGATTTCTGTTGTCTCAAAGGAAAACCTGTTT...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR GCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGAATTATATTCCCTTTaGTGTCTCTCCATGTCATCT | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEELYSL*CLSMSS Trigger: AGATGACATGGAGAGACAGCAAAGGGAATATAATTC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CCA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGCCTGAGAGTCAAATGTaGTTGAATGTGGAATTATAT | + |
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Preference number: 4 (lower is better) Translates to: TWKASKGKYLGEDREMKEPESQM*LNVELY Trigger: ATATAATTCCACATTCAACCACATTTGACTCTCAGG...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGATCCAAGCTCATAGCTaGGGTGAGTACTGTGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKEIQAHS*GEYCGL Trigger: CAGACCACAGTACTCACCCAAGCTATGAGCTTGGAT...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS GCA 90 bp | TATCCTGAGAGTCAAATGTGGTTGAATGTGGAATTATATTCCCTTTaGTGTCTCTCCATGTCATCTCAGCAGGTGGGATCAAGCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: YPESQMWLNVELYSL*CLSMSSQQVGSSFL Trigger: CAGGAAGCTTGATCCCACCTGCTGAGATGACATGGAGAGACAGCAAAGGGAATATAATTCCACATTCAACCACATTTGACTCTCAGGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGAATGTCAGCTTGACTTaGCTCCATCTGTGTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKENVSLT*LHLCPQ Trigger: CTGAGGACACAGATGGAGCAAAGTCAAGCTGACATT...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGTGCAAAAATGTCAGCTaGACTTTGCTCCATCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKECKNVS*TLLHLC Trigger: ACACAGATGGAGCAAAGTCAAGCTGACATTTTTGCA...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGGAATTATATTCCCTTaGCTGTCTCTCCATGTCATC | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKEGIIFP*LSLHVI Trigger: GATGACATGGAGAGACAGCAAAGGGAATATAATTCC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGTGCTCAAAGTCATGTTaGGAAAGATCCATGCTCATG | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKECSKSC*ERSMLM Trigger: CATGAGCATGGATCTTTCCAAACATGACTTTGAGCA...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGCAAGTAATAGGACTTaGAACTCTGTTCTTCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKEASNRT*NSVLQK Trigger: CTTCTGAAGAACAGAGTTCAAAGTCCTATTACTTGC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS-3UTR CAA 90 bp | ACATGGAAAGCATCGAAAGGAAAGTACCTGGGAGAAGATAGAGAGATGAAAGAGGAGAGTCAAATGTGGTaGAATGTGGAATTATATTCC | + |
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Preference number: 5 (lower is better) Translates to: TWKASKGKYLGEDREMKEESQMW*NVELYS Trigger: GGAATATAATTCCACATTCAACCACATTTGACTCTC...CTCTTTCATCTCTCTATCTTCTCCCAGGTACTTTCCTTTCGATGCTTTCCATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS CCA 90 bp | ACCTGGCTTCAGAACACTCTTGGAATAATTTCTAGCTGCAAAATGTaGTTTAATCAATGCAAAAATGTCAGCTTGACTTTGCTCCATCTG | + |
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Preference number: 5 (lower is better) Translates to: TWLQNTLGIISSCKM*FNQCKNVSLTLLHL Trigger: CAGATGGAGCAAAGTCAAGCTGACATTTTTGCATTGATTAAACCACATTTTGCAGCTAGAAATTATTCCAAGAGTGTTCTGAAGCCAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068851.6 |
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| CDS CCA 90 bp | TGCTTTTCAAATACAATAACCCAGCTCTATCCTGAGAGTCAAATGTaGTTGAATGTGGAATTATATTCCCTTTGCTGTCTCTCCATGTCA | + |
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Preference number: 5 (lower is better) Translates to: CFSNTITQLYPESQM*LNVELYSLCCLSMS Trigger: TGACATGGAGAGACAGCAAAGGGAATATAATTCCACATTCAACCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTATTTGAAAAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS TCA 90 bp | TTCAGAAGAATGCTGCTTTTCAAATACAATAACCCAGCTCTATCCTaGGAGTCAAATGTGGTTGAATGTGGAATTATATTCCCTTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: FRRMLLFKYNNPALS*ESNVVECGIIFPLL Trigger: CAGCAAAGGGAATATAATTCCACATTCAACCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTATTTGAAAAGCAGCATTCTTCTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS CAA 90 bp | AGCTTCACCTCTGCAGGCACTGGTACTTTCATGCACATACATTCCTaGAATGTTGCAAGTTGGGTTCATAAAACAGGAATCATGAACTTC | + |
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Preference number: 6 (lower is better) Translates to: SFTSAGTGTFMHIHS*NVASWVHKTGIMNF Trigger: GAAGTTCATGATTCCTGTTTTATGAACCCAACTTGCAACATTCAAGGAATGTATGTGCATGAAAGTACCAGTGCCTGCAGAGGTGAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068851.6 |
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| CDS TCA 72 bp | CTGCAGGCACTGGTACTTTCATGCACATACATTCCTTaGATGTTGCAAGTTGGGTTCATAAAACAGGAATCA | + |
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Preference number: 6 (lower is better) Translates to: LQALVLSCTYIP*MLQVGFIKQES Trigger: TGATTCCTGTTTTATGAACCCAACTTGCAACATTCAAGGAATGTATGTGCATGAAAGTACCAGTGCCTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068851.6 |
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| CDS TCA 72 bp | ATGCTGCTTTTCAAATACAATAACCCAGCTCTATCCTaGGAGTCAAATGTGGTTGAATGTGGAATTATATTC | + |
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Preference number: 6 (lower is better) Translates to: MLLFKYNNPALS*ESNVVECGIIF Trigger: GAATATAATTCCACATTCAACCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTATTTGAAAAGCAGCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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| CDS CAA 72 bp | CTGAAGTGGGTTGAAGCTATCCTCTATACAACTTTCTaGGTGTTGACTAAATATTGTTTCTTCAAAAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LKWVEAILYTTF*VLTKYCFFKSS Trigger: GGAACTTTTGAAGAAACAATATTTAGTCAACACCAAGAAAGTTGTATAGAGGATAGCTTCAACCCACTTCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060327.4 |
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