Pregenerated sensors for SKINT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089773Ensembl transcript IDs: ENSMUST00000117379.9, ENSMUST00000161389.8, ENSMUST00000162158.2, ENSMUST00000162885.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCTGCTCTGAGCTTGCTGTaGCCATCTGAAGAAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: ALPSIGFPKICLMFGCGSALSLL*PSEEGT Trigger: TGTTCCTTCTTCAGATGGTCACAGCAAGCTCAGAGC...AGATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR GCA 90 bp | TGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCCTTCTGTCTCTCCATTaGATGAGAGGTCGTGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: CPSFYRIPQNLLNVWMWILLSLH*MRGRGN Trigger: GTTCCCACGACCTCTCATGCAATGGAGAGACAGAAG...GATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | ATTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGAACCAACCTCCAGAGTaGCACTCCACTATCACACCT | + |
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Preference number: 4 (lower is better) Translates to: IPCPSFYRIPQNLLNVWMNQPPE*HSTITP Trigger: AGGTGTGATAGTGGAGTGTCACTCTGGAGGTTGGTT...CATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | TGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCGAGACAACTGACAACTaGGTTCTAAGTTTCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: CPSFYRIPQNLLNVWMWIETTDN*VLSFHP Trigger: TGGGTGGAAACTTAGAACTCAGTTGTCAGTTGTCTC...GATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR CCA 90 bp | CCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCTTTCTGGGCTTGTTGTGGTaGAGACAACTGACAACTGAG | + |
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Preference number: 4 (lower is better) Translates to: PSFYRIPQNLLNVWMWIFLGLLW*RQLTTE Trigger: CTCAGTTGTCAGTTGTCTCCACCACAACAAGCCCAG...AAAGATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR CCA 90 bp | TTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTTCTCTACCCTGTGAGTaGGATTTTGATGCAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: FLALPSIGFPKICLMFGCSLPCE*DFDAAG Trigger: TCCAGCTGCATCAAAATCCCACTCACAGGGTAGAGA...ACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | CCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCTTTCACTATAAATGGCTCTaGGCTTGCTGTGACCATCTG | + |
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Preference number: 4 (lower is better) Translates to: PSFYRIPQNLLNVWMWIFHYKWL*ACCDHL Trigger: CAGATGGTCACAGCAAGCTCAGAGCCATTTATAGTG...AAAGATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | GCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCTAGAAATCACCATCTTTaGACACACAGTGGTAAGACC | + |
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Preference number: 4 (lower is better) Translates to: ALPSIGFPKICLMFGCGSRNHHL*THSGKT Trigger: GGTCTTACCACTGTGTGTTCAAAGATGGTGATTTCT...AGATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | CTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATTAGGAGGGTGCACATaGATCTGTACCTGTAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: LALPSIGFPKICLMFGCGLGGCT*ICTCKF Trigger: AAACTTACAGGTACAGATTCATGTGCACCCTCCTAA...TCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | GCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGATCTCCTGTTAGAGGGTTCTaGAGACAACAAATGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: ALPSIGFPKICLMFGCGSPVRGF*RQQMTF Trigger: GAAAGTCATTTGTTGTCTTCAGAACCCTCTAACAGG...AGATCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | TTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGCAGGAACCATCAGTaGACACAGGATTACACTTAT | + |
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Preference number: 4 (lower is better) Translates to: FLALPSIGFPKICLMFGCGRNHQ*TQDYTY Trigger: ATAAGTGTAATCCTGTGTTCACTGATGGTTCCTGCC...ACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR CCA 90 bp | ACATTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATATAGGAAACAAGCATaGTGGCAGGAACCATCAGTG | + |
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Preference number: 4 (lower is better) Translates to: TFLALPSIGFPKICLMFGYRKQA*WQEPSV Trigger: CACTGATGGTTCCTGCCACCATGCTTGTTTCCTATA...TCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | ATTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGCTTGCTGTGACCATCTaGAGAAGGAACATGACAATA | + |
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Preference number: 4 (lower is better) Translates to: IPCPSFYRIPQNLLNVWMLAVTI*RRNMTI Trigger: TATTGTCATGTTCCTTCTTCAGATGGTCACAGCAAG...CATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | ATTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGTGGTGGAGACAACTaGCAACTGAGTTCTAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: IPCPSFYRIPQNLLNVWMCGGDN*QLSSKF Trigger: AAACTTAGAACTCAGTTGTCAGTTGTCTCCACCACA...CATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR TCA 90 bp | TTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGGATATCTTCATATTaGACAGTTTGTCTCTACCCT | + |
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Preference number: 4 (lower is better) Translates to: FLALPSIGFPKICLMFGCGISSY*TVCLYP Trigger: AGGGTAGAGACAAACTGTTCAATATGAAGATATCCC...ACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS-3UTR CCA 90 bp | CTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGGACAACAAATGACTTTCTaGAAGAAGCTTTCACTAATG | + |
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Preference number: 4 (lower is better) Translates to: LALPSIGFPKICLMFGCGQQMTF*KKLSLM Trigger: CATTAGTGAAAGCTTCTTCCAGAAAGTCATTTGTTG...TCCACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS CCA 90 bp | TGGAATGACCTCCCCTCTTCTGTCTCTCCATTGCATGAGAGGTCGTaGGAACCAACCTCCAGAGTGACACTCCACTATCACACCTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: WNDLPSSVSPLHERS*EPTSRVTLHYHTFG Trigger: ACCAAAGGTGTGATAGTGGAGTGTCACTCTGGAGGTTGGTTCCCACGACCTCTCATGCAATGGAGAGACAGAAGAGGGGAGGTCATTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS TCA 90 bp | GAATCTCCATGTGCTGGGCTTGTTGTGGTGGAGACAACTGACAACTaGGTTCTAAGTTTCCACCCAATGAAGCCAAGACTGGCCCCTCTA | + |
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Preference number: 5 (lower is better) Translates to: ESPCAGLVVVETTDN*VLSFHPMKPRLAPL Trigger: TAGAGGGGCCAGTCTTGGCTTCATTGGGTGGAAACTTAGAACTCAGTTGTCAGTTGTCTCCACCACAACAAGCCCAGCACATGGAGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 ENSMUST00000162885.8 |
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| CDS TCA 90 bp | AACCAGCGAATCTCCATGTGCTGGGCTTGTTGTGGTGGAGACAACTaGCAACTGAGTTCTAAGTTTCCACCCAATGAAGCCAAGACTGGC | + |
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Preference number: 5 (lower is better) Translates to: NQRISMCWACCGGDN*QLSSKFPPNEAKTG Trigger: GCCAGTCTTGGCTTCATTGGGTGGAAACTTAGAACTCAGTTGTCAGTTGTCTCCACCACAACAAGCCCAGCACATGGAGATTCGCTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 ENSMUST00000162885.8 |
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| CDS-3UTR CAA 90 bp | TTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTCTCCATGTGCTGGGCTaGTTGTGGTGGAGACAACTG | + |
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Preference number: 5 (lower is better) Translates to: FLALPSIGFPKICLMFGCLHVLG*LWWRQL Trigger: CAGTTGTCTCCACCACAACAAGCCCAGCACATGGAG...ACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS TCA 90 bp | AGTTCCCTCCCCTGCTCCCACGTGGCATACGTACCTTTATGCTCATaGTGTAGCAGACAACTAAAAACAAAGATAGAGACCACCATCATA | + |
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Preference number: 5 (lower is better) Translates to: SSLPCSHVAYVPLCS*CSRQLKTKIETTII Trigger: TATGATGGTGGTCTCTATCTTTGTTTTTAGTTGTCTGCTACATCATGAGCATAAAGGTACGTATGCCACGTGGGAGCAGGGGAGGGAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161389.8 |
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| CDS CCA 90 bp | AGAAGGGATATCTTCATATTGAACAGTTTGTCTCTACCCTGTGAGTaGGATTTTGATGCAGCTGGAATGACCTCCCCTCTTCTGTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: RRDIFILNSLSLPCE*DFDAAGMTSPLLSL Trigger: GAGAGACAGAAGAGGGGAGGTCATTCCAGCTGCATCAAAATCCCACTCACAGGGTAGAGACAAACTGTTCAATATGAAGATATCCCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS-3UTR CAA 90 bp | TTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTTCTCCAAACATGTCTTaGCCATCTCTGTACAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: FLALPSIGFPKICLMFGCSPNMS*PSLYRC Trigger: GCACCTGTACAGAGATGGCAAAGACATGTTTGGAGA...ACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS TCA 90 bp | CCTGAAATATGTATAGGAAACAAGCATGGTGGCAGGAACCATCAGTaGACACAGGATTACACTTATGTCTTCCACCCACAAAGTATCCAA | + |
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Preference number: 5 (lower is better) Translates to: PEICIGNKHGGRNHQ*TQDYTYVFHPQSIQ Trigger: TTGGATACTTTGTGGGTGGAAGACATAAGTGTAATCCTGTGTTCACTGATGGTTCCTGCCACCATGCTTGTTTCCTATACATATTTCAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS TCA 90 bp | GATAGAATAACACTTGTCCTTTCCTCTTGGCCTGTTAGAGGGTTCTaGAGACAACAAATGACTTTCTGGAAGAAGCTTTCACTAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: DRITLVLSSWPVRGF*RQQMTFWKKLSLMR Trigger: TCTCATTAGTGAAAGCTTCTTCCAGAAAGTCATTTGTTGTCTTCAGAACCCTCTAACAGGCCAAGAGGAAAGGACAAGTGTTATTCTATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS-3UTR CAA 90 bp | TTCCTTGCCCTTCCTTCTATAGGATTCCCCAAAATCTGCTTAATGTTTGGATGTGTACGTTCCACATACTaGGAGATAATTTCTCCAAAC | + |
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Preference number: 5 (lower is better) Translates to: FLALPSIGFPKICLMFGCVRSTY*EIISPN Trigger: GTTTGGAGAAATTATCTCCAAGTATGTGGAACGTAC...ACATCCAAACATTAAGCAGATTTTGGGGAATCCTATAGAAGGAAGGGCAAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS TCA 90 bp | TTTATCCAAGGAGCATCCCACTTCCACTTACAAACTTTATGCTCATaGTGTAGCAGACAACTAAAAACAAAGATAGAGACCACCATCATA | + |
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Preference number: 5 (lower is better) Translates to: FIQGASHFHLQTLCS*CSRQLKTKIETTII Trigger: TATGATGGTGGTCTCTATCTTTGTTTTTAGTTGTCTGCTACATCATGAGCATAAAGTTTGTAAGTGGAAGTGGGATGCTCCTTGGATAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS CAA 72 bp | TGCAGCTGGAATGACCTCCCCTCTTCTGTCTCTCCATaGCATGAGAGGTCGTGGGAACCAACCTCCAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: CSWNDLPSSVSP*HERSWEPTSRV Trigger: CACTCTGGAGGTTGGTTCCCACGACCTCTCATGCAATGGAGAGACAGAAGAGGGGAGGTCATTCCAGCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS CCA 72 bp | CTCCCCTCTTCTGTCTCTCCATTGCATGAGAGGTCGTaGGAACCAACCTCCAGAGTGACACTCCACTATCAC | + |
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Preference number: 6 (lower is better) Translates to: LPSSVSPLHERS*EPTSRVTLHYH Trigger: GTGATAGTGGAGTGTCACTCTGGAGGTTGGTTCCCACGACCTCTCATGCAATGGAGAGACAGAAGAGGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS TCA 72 bp | TGTGCTGGGCTTGTTGTGGTGGAGACAACTGACAACTaGGTTCTAAGTTTCCACCCAATGAAGCCAAGACTG | + |
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Preference number: 6 (lower is better) Translates to: CAGLVVVETTDN*VLSFHPMKPRL Trigger: CAGTCTTGGCTTCATTGGGTGGAAACTTAGAACTCAGTTGTCAGTTGTCTCCACCACAACAAGCCCAGCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 ENSMUST00000162885.8 |
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| CDS TCA 72 bp | ATCTCCATGTGCTGGGCTTGTTGTGGTGGAGACAACTaGCAACTGAGTTCTAAGTTTCCACCCAATGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: ISMCWACCGGDN*QLSSKFPPNEA Trigger: GGCTTCATTGGGTGGAAACTTAGAACTCAGTTGTCAGTTGTCTCCACCACAACAAGCCCAGCACATGGAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 ENSMUST00000162885.8 |
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| CDS TCA 72 bp | CCCTGCTCCCACGTGGCATACGTACCTTTATGCTCATaGTGTAGCAGACAACTAAAAACAAAGATAGAGACC | + |
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Preference number: 6 (lower is better) Translates to: PCSHVAYVPLCS*CSRQLKTKIET Trigger: GGTCTCTATCTTTGTTTTTAGTTGTCTGCTACATCATGAGCATAAAGGTACGTATGCCACGTGGGAGCAGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161389.8 |
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| CDS TCA 72 bp | TCTGAGCATGATTGTGCTGGCACCAGTCTTTCAACCTaGAATATGTATAGGAAACAAGCATGGTGGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: SEHDCAGTSLST*NMYRKQAWWQE Trigger: TTCCTGCCACCATGCTTGTTTCCTATACATATTTCAGGTTGAAAGACTGGTGCCAGCACAATCATGCTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS TCA 72 bp | CCTCTGTTATGTGCTCTTCATAGAAATCACCATCTTTaGACACACAGTGGTAAGACCCATCATCATCAACAG | + |
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Preference number: 6 (lower is better) Translates to: PLLCALHRNHHL*THSGKTHHHQQ Trigger: CTGTTGATGATGATGGGTCTTACCACTGTGTGTTCAAAGATGGTGATTTCTATGAAGAGCACATAACAGAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 ENSMUST00000162885.8 |
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| CDS CAA 90 bp | AAGAAGCTTTCACTAATGAGAAGGGATATCTTCATATTGAACAGTTaGTCTCTACCCTGTGAGTGGGATTTTGATGCAGCTGGAATGACC | + |
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Preference number: 6 (lower is better) Translates to: KKLSLMRRDIFILNS*SLPCEWDFDAAGMT Trigger: GGTCATTCCAGCTGCATCAAAATCCCACTCACAGGGTAGAGACAAACTGTTCAATATGAAGATATCCCTTCTCATTAGTGAAAGCTTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS CAA 90 bp | ACTTTCTGGAAGAAGCTTTCACTAATGAGAAGGGATATCTTCATATaGAACAGTTTGTCTCTACCCTGTGAGTGGGATTTTGATGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: TFWKKLSLMRRDIFI*NSLSLPCEWDFDAA Trigger: AGCTGCATCAAAATCCCACTCACAGGGTAGAGACAAACTGTTCAATATGAAGATATCCCTTCTCATTAGTGAAAGCTTCTTCCAGAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS TCA 72 bp | GGAGCATCCCACTTCCACTTACAAACTTTATGCTCATaGTGTAGCAGACAACTAAAAACAAAGATAGAGACC | + |
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Preference number: 6 (lower is better) Translates to: GASHFHLQTLCS*CSRQLKTKIET Trigger: GGTCTCTATCTTTGTTTTTAGTTGTCTGCTACATCATGAGCATAAAGTTTGTAAGTGGAAGTGGGATGCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162158.2 |
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| CDS CAA 72 bp | TCACTAATGAGAAGGGATATCTTCATATTGAACAGTTaGTCTCTACCCTGTGAGTGGGATTTTGATGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SLMRRDIFILNS*SLPCEWDFDAA Trigger: AGCTGCATCAAAATCCCACTCACAGGGTAGAGACAAACTGTTCAATATGAAGATATCCCTTCTCATTAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 |
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| CDS CAA 72 bp | ATCCCATCTTTTAAGAGTTCTGTACGTTCCACATACTaGGAGATAATTTCTCCAAACATGTCTTTGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: IPSFKSSVRSTY*EIISPNMSLPS Trigger: AGATGGCAAAGACATGTTTGGAGAAATTATCTCCAAGTATGTGGAACGTACAGAACTCTTAAAAGATGGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000117379.9 ENSMUST00000161389.8 ENSMUST00000162158.2 ENSMUST00000162885.8 |
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