Pregenerated sensors for SKAP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059182Ensembl transcript IDs: ENSMUST00000078214.8, ENSMUST00000203948.2, ENSMUST00000204778.3
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCACACGGCCTCTCAGTCGGCTGTGGTGGGGGAGGGGTTCCCAAGTaGGTCCACGTGCAAACGACAAGCTGCTGCCATCTGCTGGCCACT | + |
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Preference number: 1 (lower is better) Translates to: SHGLSVGCGGGGVPK*VHVQTTSCCHLLAT Trigger: AGTGGCCAGCAGATGGCAGCAGCTTGTCGTTTGCACGTGGACCCACTTGGGAACCCCTCCCCCACCACAGCCGACTGAGAGGCCGTGTGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 90 bp | GAAAAGAACAAAGGCCACACACGGCTCTGGGAAGAGCGGCCTCTGTaGTGGAAACGGGGGCCATCCGTTGGCAAAGGACTCCCTCTCCTG | + |
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Preference number: 1 (lower is better) Translates to: EKNKGHTRLWEERPL*WKRGPSVGKGLPLL Trigger: CAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTTGTTCTTTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | AAGAACAAAGGCCACACACGGCTCTGGGAAGAGCGGCCTCTGTGCTaGAAACGGGGGCCATCCGTTGGCAAAGGACTCCCTCTCCTGGAT | + |
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Preference number: 1 (lower is better) Translates to: KNKGHTRLWEERPLC*KRGPSVGKGLPLLD Trigger: ATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTTGTTCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 90 bp | AGAGCAAGTCAGCCTTCCCTTCACTCACTGCTGGCTGCCAACTGCTaGCATCCCGCAAGAGTCTGTCTCTTCCGTTTGGTCCAGAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: RASQPSLHSLLAANC*HPARVCLFRLVQSS Trigger: GCTGCTCTGGACCAAACGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCTGACTTGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 90 bp | CAGAGAGCAAGTCAGCCTTCCCTTCACTCACTGCTGGCTGCCAACTaGTGCCATCCCGCAAGAGTCTGTCTCTTCCGTTTGGTCCAGAGC | + |
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Preference number: 1 (lower is better) Translates to: QRASQPSLHSLLAAN*CHPARVCLFRLVQS Trigger: GCTCTGGACCAAACGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCTGACTTGCTCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | GCTCTGGGAAGAGCGGCCTCTGTGCTGGAAACGGGGGCCATCCGTTaGCAAAGGACTCCCTCTCCTGGATTAACTGGAAAAGAAGACGGA | + |
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Preference number: 1 (lower is better) Translates to: ALGRAASVLETGAIR*QRTPSPGLTGKEDG Trigger: TCCGTCTTCTTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 90 bp | GCAGTATCAGAGAGCAAGTCAGCCTTCCCTTCACTCACTGCTGGCTaGCAACTGCTGCCATCCCGCAAGAGTCTGTCTCTTCCGTTTGGT | + |
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Preference number: 1 (lower is better) Translates to: AVSESKSAFPSLTAG*QLLPSRKSLSLPFG Trigger: ACCAAACGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCTGACTTGCTCTCTGATACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 90 bp | GGGTTCCCAAGTGGGTCCACGTGCAAACGACAAGCTGCTGCCATCTaGTGGCCACTTAGGTTAAAGGCACAACCCCGTAACCATAGGCTA | + |
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Preference number: 1 (lower is better) Translates to: GFPSGSTCKRQAAAI*WPLRLKAQPRNHRL Trigger: TAGCCTATGGTTACGGGGTTGTGCCTTTAACCTAAGTGGCCAGCAGATGGCAGCAGCTTGTCGTTTGCACGTGGACCCACTTGGGAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | TTCCCAAGTGGGTCCACGTGCAAACGACAAGCTGCTGCCATCTGCTaGCCACTTAGGTTAAAGGCACAACCCCGTAACCATAGGCTAGGC | + |
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Preference number: 1 (lower is better) Translates to: FPSGSTCKRQAAAIC*PLRLKAQPRNHRLG Trigger: GCCTAGCCTATGGTTACGGGGTTGTGCCTTTAACCTAAGTGGCCAGCAGATGGCAGCAGCTTGTCGTTTGCACGTGGACCCACTTGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | AACGGGGGCCATCCGTTGGCAAAGGACTCCCTCTCCTGGATTAACTaGAAAAGAAGACGGAAATCACACGGCCTCTCAGTCGGCTGTGGT | + |
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Preference number: 1 (lower is better) Translates to: NGGHPLAKDSLSWIN*KRRRKSHGLSVGCG Trigger: ACCACAGCCGACTGAGAGGCCGTGTGATTTCCGTCTTCTTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | AACAGCAGTATCAGAGAGCAAGTCAGCCTTCCCTTCACTCACTGCTaGCTGCCAACTGCTGCCATCCCGCAAGAGTCTGTCTCTTCCGTT | + |
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Preference number: 1 (lower is better) Translates to: NSSIREQVSLPFTHC*LPTAAIPQESVSSV Trigger: AACGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCTGACTTGCTCTCTGATACTGCTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | TGTGCTGGAAACGGGGGCCATCCGTTGGCAAAGGACTCCCTCTCCTaGATTAACTGGAAAAGAAGACGGAAATCACACGGCCTCTCAGTC | + |
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Preference number: 1 (lower is better) Translates to: CAGNGGHPLAKDSLS*INWKRRRKSHGLSV Trigger: GACTGAGAGGCCGTGTGATTTCCGTCTTCTTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | CATGTATATTCACGTTTAGAAAAGAACAAAGGCCACACACGGCTCTaGGAAGAGCGGCCTCTGTGCTGGAAACGGGGGCCATCCGTTGGC | + |
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Preference number: 1 (lower is better) Translates to: HVYSRLEKNKGHTRL*EERPLCWKRGPSVG Trigger: GCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTTGTTCTTTTCTAAACGTGAATATACATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 90 bp | TCAGAGAGGTCAGCGAATACCTGCCTGCCTCGGACTCTGAAAACATaGCCAAGTTGTTTATACCATTGTATTAATGGTAAATGGGCTTTC | + |
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Preference number: 1 (lower is better) Translates to: SERSANTCLPRTLKT*PSCLYHCINGKWAF Trigger: GAAAGCCCATTTACCATTAATACAATGGTATAAACAACTTGGGCATGTTTTCAGAGTCCGAGGCAGGCAGGTATTCGCTGACCTCTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 90 bp | ATGAGTTTATCAACTCAACAGAAAGCGCACTTAAAGCACAGGGAGTaGCAGGTTTTCTCATCTTTCCCAATTTTAAAGGCCTTTGGTTCC | + |
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Preference number: 1 (lower is better) Translates to: MSLSTQQKAHLKHRE*QVFSSFPILKAFGS Trigger: GGAACCAAAGGCCTTTAAAATTGGGAAAGATGAGAAAACCTGCCACTCCCTGTGCTTTAAGTGCGCTTTCTGTTGAGTTGATAAACTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR TCA 90 bp | TTCAAGCACCGGTTTATTCTTTCTTACCTACAGCAGGTAAACCCGTaGGTCTATACAACTTCTTTAATGAAAACATGTTATTACTCTATG | + |
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Preference number: 1 (lower is better) Translates to: FKHRFILSYLQQVNP*VYTTSLMKTCYYSM Trigger: CATAGAGTAATAACATGTTTTCATTAAAGAAGTTGTATAGACTCACGGGTTTACCTGCTGTAGGTAAGAAAGAATAAACCGGTGCTTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CAA 90 bp | GGCTCTGGGAAGAGCGGCCTCTGTGCTGGAAACGGGGGCCATCCGTaGGCAAAGGACTCCCTCTCCTGGATTAACTGGAAAAGAAGACGG | + |
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Preference number: 2 (lower is better) Translates to: GSGKSGLCAGNGGHP*AKDSLSWINWKRRR Trigger: CCGTCTTCTTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR TCA 90 bp | GGTTCCCAAGTGGGTCCACGTGCAAACGACAAGCTGCTGCCATCTGCTGGCCACGCCTGCCTCGGACTCTaGAAACATGCCCAAGTTGTT | + |
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Preference number: 2 (lower is better) Translates to: GSQVGPRANDKLLPSAGHACLGL*KHAQVV Trigger: AACAACTTGGGCATGTTTTCAGAGTCCGAGGCAGGC...GTGGCCAGCAGATGGCAGCAGCTTGTCGTTTGCACGTGGACCCACTTGGGAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR TCA 90 bp | GGTTCCCAAGTGGGTCCACGTGCAAACGACAAGCTGCTGCCATCTGCTGGCCACAGTCACTGGTGCATCTaGGACAGAGTAAGGCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: GSQVGPRANDKLLPSAGHSHWCI*DRVRLS Trigger: GGAGAGCCTTACTCTGTCTCAGATGCACCAGTGACT...GTGGCCAGCAGATGGCAGCAGCTTGTCGTTTGCACGTGGACCCACTTGGGAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR GCA 90 bp | CAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGATGTTCCAAGGCACTTaGAGACAGACACAAGACTTC | + |
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Preference number: 2 (lower is better) Translates to: QLRQECSPKGRWLRAGTQMFQGT*RQTQDF Trigger: GAAGTCTTGTGTCTGTCTGCAAGTGCCTTGGAACAT...CTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| 3UTR-3UTR GCA 90 bp | CTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGGCAATGTTCCAAGGCACTTaGAGACAGACACAAGACTTC | + |
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Preference number: 2 (lower is better) Translates to: LRQECSPKGRWLRAGTQAMFQGT*RQTQDF Trigger: GAAGTCTTGTGTCTGTCTGCAAGTGCCTTGGAACAT...TGCCTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| 3UTR-3UTR GCA 90 bp | ACAAAGGCCACACACGGCTCTGGGAAGAGCGGCCTCTGTGCTGGAAACGGGGGCATTTGCATTCCGACCTaGAAAATTAGGCAAAAGCTA | + |
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Preference number: 2 (lower is better) Translates to: TKATHGSGKSGLCAGNGGICIPT*KIRQKL Trigger: TAGCTTTTGCCTAATTTTGCAGGTCGGAATGCAAAT...GCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR CCA 90 bp | CTACTGCTTGTATCTAATGTAACCCATCACTGCCTGCTCAATCTGACATCAGAGCGTGACTACATCGAATaGCAGCTGAGGCAGGAATGT | + |
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Preference number: 2 (lower is better) Translates to: LLLVSNVTHHCLLNLTSERDYIE*QLRQEC Trigger: ACATTCCTGCCTCAGCTGCCATTCGATGTAGTCACG...CTCTGATGTCAGATTGAGCAGGCAGTGATGGGTTACATTAGATACAAGCAGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| 3UTR-3UTR GCA 90 bp | ACTGTCAAGGGTAGAGAGAAACTTCTTCATAGCACAAAGATGAGTTTATCAACTGTGCAAACGACAAGCTaGTGCCATCTGCTGGCCACT | + |
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Preference number: 2 (lower is better) Translates to: TVKGREKLLHSTKMSLSTVQTTS*CHLLAT Trigger: AGTGGCCAGCAGATGGCAGCAGCTTGTCGTTTGCAC...AGTTGATAAACTCATCTTTGTGCTATGAAGAAGTTTCTCTCTACCCTTGACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR GCA 90 bp | TTGGTTCCAGTCTTCTATCTCCCATGTATATTCACGTTTAGAAAAGAACAAAGGAAAGAGTCAGGATTCTaGAACCCTTACCCATGCATC | + |
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Preference number: 2 (lower is better) Translates to: LVPVFYLPCIFTFRKEQRKESGF*NPYPCI Trigger: GATGCATGGGTAAGGGTTGCAGAATCCTGACTCTTT...CCTTTGTTCTTTTCTAAACGTGAATATACATGGGAGATAGAAGACTGGAACCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR CCA 90 bp | ACTGTCAAGGGTAGAGAGAAACTTCTTCATAGCACAAAGATGAGTTTATCAACTAATTTTAAAGGCCTTTaGTTCCAGTCTTCTATCTCC | + |
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Preference number: 2 (lower is better) Translates to: TVKGREKLLHSTKMSLSTNFKGL*FQSSIS Trigger: GGAGATAGAAGACTGGAACCAAAGGCCTTTAAAATT...AGTTGATAAACTCATCTTTGTGCTATGAAGAAGTTTCTCTCTACCCTTGACAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | GGCCACACACGGCTCTGGGAAGAGCGGCCTCTGTGCTaGAAACGGGGGCCATCCGTTGGCAAAGGACTCCCT | + |
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Preference number: 3 (lower is better) Translates to: GHTRLWEERPLC*KRGPSVGKGLP Trigger: AGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 72 bp | AAAGGCCACACACGGCTCTGGGAAGAGCGGCCTCTGTaGTGGAAACGGGGGCCATCCGTTGGCAAAGGACTC | + |
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Preference number: 3 (lower is better) Translates to: KGHTRLWEERPL*WKRGPSVGKGL Trigger: GAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | CTCTCAGTCGGCTGTGGTGGGGGAGGGGTTCCCAAGTaGGTCCACGTGCAAACGACAAGCTGCTGCCATCTG | + |
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Preference number: 3 (lower is better) Translates to: LSVGCGGGGVPK*VHVQTTSCCHL Trigger: CAGATGGCAGCAGCTTGTCGTTTGCACGTGGACCCACTTGGGAACCCCTCCCCCACCACAGCCGACTGAGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | AAGACGGAAATCACACGGCCTCTCAGTCGGCTGTGGTaGGGGAGGGGTTCCCAAGTGGGTCCACGTGCAAAC | + |
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Preference number: 3 (lower is better) Translates to: KTEITRPLSRLW*GRGSQVGPRAN Trigger: GTTTGCACGTGGACCCACTTGGGAACCCCTCCCCCACCACAGCCGACTGAGAGGCCGTGTGATTTCCGTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | AAGAAGACGGAAATCACACGGCCTCTCAGTCGGCTGTaGTGGGGGAGGGGTTCCCAAGTGGGTCCACGTGCA | + |
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Preference number: 3 (lower is better) Translates to: KKTEITRPLSRL*WGRGSQVGPRA Trigger: TGCACGTGGACCCACTTGGGAACCCCTCCCCCACCACAGCCGACTGAGAGGCCGTGTGATTTCCGTCTTCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 72 bp | GAAGGGCTTTCAGCAACCCGGCTCTGGTTTGATCTGTaGGCCAGCGGACAGCAGGCTGCCACTTTCCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: EGLSATRLWFDL*ASGQQAATFPL Trigger: TAGAGGGAAAGTGGCAGCCTGCTGTCCGCTGGCGCACAGATCAAACCAGAGCCGGGTTGCTGAAAGCCCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR CAA 90 bp | CCTCTCAGTCGGCTGTGGTGGGGGAGGGGTTCCCAAGTGGGTCCACGTGCAAACCATGTTCCAAGGCACTaGCAGACAGACACAAGACTT | + |
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Preference number: 3 (lower is better) Translates to: PLSRLWWGRGSQVGPRANHVPRH*QTDTRL Trigger: AAGTCTTGTGTCTGTCTGCAAGTGCCTTGGAACATG...GTTTGCACGTGGACCCACTTGGGAACCCCTCCCCCACCACAGCCGACTGAGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 72 bp | CAGCCTTCCCTTCACTCACTGCTGGCTGCCAACTGCTaGCATCCCGCAAGAGTCTGTCTCTTCCGTTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: QPSLHSLLAANC*HPARVCLFRLV Trigger: GACCAAACGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 72 bp | GAGAGCAAGTCAGCCTTCCCTTCACTCACTGCTGGCTaGCAACTGCTGCCATCCCGCAAGAGTCTGTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: ESKSAFPSLTAG*QLLPSRKSLSL Trigger: AAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCTGACTTGCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | TGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTaGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCA | + |
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Preference number: 3 (lower is better) Translates to: WQLRQECSPKGR*LRAGTQAFHVP Trigger: TGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | AGAGCGGCCTCTGTGCTGGAAACGGGGGCCATCCGTTaGCAAAGGACTCCCTCTCCTGGATTAACTGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: RAASVLETGAIR*QRTPSPGLTGK Trigger: TTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTTTCCAGCACAGAGGCCGCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | TCACGTTTAGAAAAGAACAAAGGCCACACACGGCTCTaGGAAGAGCGGCCTCTGTGCTGGAAACGGGGGCCA | + |
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Preference number: 3 (lower is better) Translates to: SRLEKNKGHTRL*EERPLCWKRGP Trigger: TGGCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTTGTTCTTTTCTAAACGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | AACGGGGGCCATCCGTTGGCAAAGGACTCCCTCTCCTaGATTAACTGGAAAAGAAGACGGAAATCACACGGC | + |
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Preference number: 3 (lower is better) Translates to: NGGHPLAKDSLS*INWKRRRKSHG Trigger: GCCGTGTGATTTCCGTCTTCTTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATGGCCCCCGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | CATCCGTTGGCAAAGGACTCCCTCTCCTGGATTAACTaGAAAAGAAGACGGAAATCACACGGCCTCTCAGTC | + |
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Preference number: 3 (lower is better) Translates to: HPLAKDSLSWIN*KRRRKSHGLSV Trigger: GACTGAGAGGCCGTGTGATTTCCGTCTTCTTTTCCAGTTAATCCAGGAGAGGGAGTCCTTTGCCAACGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR TCA 72 bp | TGCCTGCTCAATCTGACATCAGAGTGCTTTAGTGCGTaGCTACATCGAATGGCAGCTGAGGCAGGAATGTTC | + |
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Preference number: 3 (lower is better) Translates to: CLLNLTSECFSA*LHRMAAEAGMF Trigger: GAACATTCCTGCCTCAGCTGCCATTCGATGTAGTCACGCACTAAAGCACTCTGATGTCAGATTGAGCAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| 3UTR TCA 72 bp | CAGAGAGGTCAGCGAATACCTGCCTGCCTCGGACTCTaGAAACATGCCCAAGTTGTTTATACCATTGTATTA | + |
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Preference number: 3 (lower is better) Translates to: QRGQRIPACLGL*KHAQVVYTIVL Trigger: TAATACAATGGTATAAACAACTTGGGCATGTTTTCAGAGTCCGAGGCAGGCAGGTATTCGCTGACCTCTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR CCA 72 bp | TCAACTCAACAGAAAGCGCACTTAAAGCACAGGGAGTaGCAGGTTTTCTCATCTTTCCCAATTTTAAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: STQQKAHLKHRE*QVFSSFPILKA Trigger: GGCCTTTAAAATTGGGAAAGATGAGAAAACCTGCCACTCCCTGTGCTTTAAGTGCGCTTTCTGTTGAGTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR GCA 72 bp | TCAGCGAATACCTGCCTGCCTCGGACTCTGAAAACATaGCCAAGTTGTTTATACCATTGTATTAATGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: SANTCLPRTLKT*PSCLYHCINGK Trigger: TTTACCATTAATACAATGGTATAAACAACTTGGGCATGTTTTCAGAGTCCGAGGCAGGCAGGTATTCGCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| 3UTR-3UTR CAA 90 bp | AATTATTTGTGGCACTCTAAAAATAACTTACACCCAGCGACTAAGAGAAACAGCCATGTTCCAAGGCACTaGCAGACAGACACAAGACTT | + |
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Preference number: 3 (lower is better) Translates to: NYLWHSKNNLHPATKRNSHVPRH*QTDTRL Trigger: AAGTCTTGTGTCTGTCTGCAAGTGCCTTGGAACATG...GCTGTTTCTCTTAGTCGCTGGGTGTAAGTTATTTTTAGAGTGCCACAAATAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| 3UTR TCA 72 bp | CGGTTTATTCTTTCTTACCTACAGCAGGTAAACCCGTaGGTCTATACAACTTCTTTAATGAAAACATGTTAT | + |
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Preference number: 3 (lower is better) Translates to: RFILSYLQQVNP*VYTTSLMKTCY Trigger: ATAACATGTTTTCATTAAAGAAGTTGTATAGACTCACGGGTTTACCTGCTGTAGGTAAGAAAGAATAAACCG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
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| CDS-3UTR GCA 90 bp | GTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGCACTTGCAGACAGAATTGGCTGGCTCCTCTaGGGGCTGCTGACGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: VAPSRHSGIPCSKALADRIGWLL*GLLTAA Trigger: TGCTGCCGTCAGCAGCCCGCAGAGGAGCCAGCCAAT...TCTGTCTGCAAGTGCCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| CDS-3UTR TCA 90 bp | ACAAAGGCCACACACGGCTCTGGGAAGAGCGGCCTCTGTGCTGGAAACGGGGGCAGAACACTGTTTTGCTaGGCGCACACCACCGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TKATHGSGKSGLCAGNGGRTLFC*AHTTVS Trigger: AGAAACGGTGGTGTGCGCTCAGCAAAACAGTGTTCT...GCCCCCGTTTCCAGCACAGAGGCCGCTCTTCCCAGAGCCGTGTGTGGCCTTTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | GCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGGCAGGAAGGTCCTGGGCTaGAATGGGAGGAAACTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: AEAGMFTQRKVAPSRHSGRKVLG*NGRKLV Trigger: AACCAGTTTCCTCCCATTGCAGCCCAGGACCTTCCT...GCCTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| 3UTR CAA 72 bp | AGGATACTGAAGGGCTTTCAGCAACCCGGCTCTGGTTaGATCTGTGCGCCAGCGGACAGCAGGCTGCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: RILKGFQQPGSG*ICAPADSRLPL Trigger: AAGTGGCAGCCTGCTGTCCGCTGGCGCACAGATCAAACCAGAGCCGGGTTGCTGAAAGCCCTTCAGTATCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| 3UTR CAA 72 bp | AACTGCTGCCATCCCGCAAGAGTCTGTCTCTTCCGTTaGGTCCAGAGCAGCGCACAGGAGTTTCGGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NCCHPARVCLFR*VQSSAQEFRPG Trigger: TCCTGGCCGAAACTCCTGTGCGCTGCTCTGGACCAAACGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR TCA 90 bp | GAATGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCCTCGTCCATCTTCACTaGAGCAGTGTCCTCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: EWQLRQECSPKGRWLRAGLVHLH*SSVLFL Trigger: GAGGAAGAGGACACTGCTTCAGTGAAGATGGACGAG...GCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCATTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | GGTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGCACTTGCAGACAGGCAATGGGAGGAAACTaGTTTCCATCAGAGGGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: GGSEQALRHSMFQGTCRQAMGGN*FPSEGP Trigger: TGGCCCCTCTGATGGAAACCAGTTTCCTCCCATTGC...CTGTCTGCAAGTGCCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | GCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGCAATGGGAGGAAACTaGTTTCCATCAGAGGGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: AAEAGMFTQRKVAPSRHSAMGGN*FPSEGP Trigger: TGGCCCCTCTGATGGAAACCAGTTTCCTCCCATTGC...TGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | TCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGAGGAAGGTCCTGGGCTaGAATGGGAGGAAACTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SPKGRWLRAGTQAFHVPRRKVLG*NGRKLV Trigger: AACCAGTTTCCTCCCATTGCAGCCCAGGACCTTCCT...CCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | GGTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGCACTTGCAGACAGGCACACCACCGTTTCTaGCATTCAAACCCCAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GGSEQALRHSMFQGTCRQAHHRF*HSNPRK Trigger: CTTTCTGGGGTTTGAATGGCAGAAACGGTGGTGTGC...CTGTCTGCAAGTGCCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | AGCCTTCCCTTCACTCACTGCTGGCTGCCAACTGCTGCCATCCCGCAAGAGTCTGTCCTCTTCCTCCTCTaGGAGCTCCTCATAAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: SLPFTHCWLPTAAIPQESVLFLL*ELLINL Trigger: GAGATTTATGAGGAGCTCCCAGAGGAGGAAGAGGAC...AGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGAAGGGAAGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | GTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGCACTTGCAGACAGAGTCCTCTTCCTCCTCTaGGAGCTCCTCATAAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: VAPSRHSGIPCSKALADRVLFLL*ELLINL Trigger: GAGATTTATGAGGAGCTCCCAGAGGAGGAAGAGGAC...TCTGTCTGCAAGTGCCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | GAATGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCAGCTGTGATCTTTTCTaGGTTTTTCCAGGTAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: EWQLRQECSPKGRWLRAGSCDLF*VFPGSQ Trigger: CTGGCTACCTGGAAAAACGCAGAAAAGATCACAGCT...GCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCATTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR TCA 90 bp | GAATGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCGGGTGTTGTTCATTCTaGCATCATAGCCATCTATTG | + |
|
Preference number: 4 (lower is better) Translates to: EWQLRQECSPKGRWLRAGGCCSF*HHSHLL Trigger: CAATAGATGGCTATGATGTCAGAATGAACAACACCC...GCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | TCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGAGCTGTGATCTTTTCTaGGTTTTTCCAGGTAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: SPKGRWLRAGTQAFHVPRSCDLF*VFPGSQ Trigger: CTGGCTACCTGGAAAAACGCAGAAAAGATCACAGCT...CCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | CTACTGCTTGTATCTAATGTAACCCATCACTGCCTGCTCAATCTGACATCAGAGATTGGCTGGCTCCTCTaGGGGCTGCTGACGGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LLLVSNVTHHCLLNLTSEIGWLL*GLLTAA Trigger: TGCTGCCGTCAGCAGCCCGCAGAGGAGCCAGCCAAT...CTCTGATGTCAGATTGAGCAGGCAGTGATGGGTTACATTAGATACAAGCAGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR TCA 90 bp | CAGGCATTCCATGTTCCAAGGCACTTGCAGACAGACACAAGACTTCTCCAGACTGGTAGCCAGCCTTTATaGCAAAAGGAAGGTCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: QAFHVPRHLQTDTRLLQTGSQPL*QKEGPG Trigger: CCCAGGACCTTCCTTTTGTCATAAAGGCTGGCTACC...AGTCTGGAGAAGTCTTGTGTCTGTCTGCAAGTGCCTTGGAACATGGAATGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | TCACTCACTGCTGGCTGCCAACTGCTGCCATCCCGCAAGAGTCTGTCTCTTCCGTCCTTTCAGTGTGTCTaGCACAAATGTTTCAACATC | + |
|
Preference number: 4 (lower is better) Translates to: SLTAGCQLLPSRKSLSLPSFQCV*HKCFNI Trigger: GATGTTGAAACATTTGTGGCAGACACACTGAAAGGA...CGGAAGAGACAGACTCTTGCGGGATGGCAGCAGTTGGCAGCCAGCAGTGAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | TACATCGAATGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAATCTTTGGGAGAGGCTaGTGTAAACTGATAGATACG | + |
|
Preference number: 4 (lower is better) Translates to: YIEWQLRQECSPKGRWLRIFGRG*CKLIDT Trigger: CGTATCTATCAGTTTACAGCAGCCTCTCCCAAAGAT...TCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCATTCGATGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | GGTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGCACTTGCAGACAGAAATGTTTCAACATCTaGCAACAGGTTCCTAATTTC | + |
|
Preference number: 4 (lower is better) Translates to: GGSEQALRHSMFQGTCRQKCFNI*QQVPNF Trigger: GAAATTAGGAACCTGTTGGCAGATGTTGAAACATTT...CTGTCTGCAAGTGCCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR TCA 90 bp | CTACTGCTTGTATCTAATGTAACCCATCACTGCCTGCTCAATCTGACATCAGAGGGTAGCCAGCCTTTATaGCAAAAGGAAGGTCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LLLVSNVTHHCLLNLTSEGSQPL*QKEGPG Trigger: CCCAGGACCTTCCTTTTGTCATAAAGGCTGGCTACC...CTCTGATGTCAGATTGAGCAGGCAGTGATGGGTTACATTAGATACAAGCAGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR TCA 90 bp | CTACTGCTTGTATCTAATGTAACCCATCACTGCCTGCTCAATCTGACATCAGAGCTCGTCCATCTTCACTaGAGCAGTGTCCTCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LLLVSNVTHHCLLNLTSELVHLH*SSVLFL Trigger: GAGGAAGAGGACACTGCTTCAGTGAAGATGGACGAG...CTCTGATGTCAGATTGAGCAGGCAGTGATGGGTTACATTAGATACAAGCAGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | CAGGCATTCCATGTTCCAAGGCACTTGCAGACAGACACAAGACTTCTCCAGACTAGTATAAATTTCAGCTaGTGGACCCATTCCTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: QAFHVPRHLQTDTRLLQTSINFS*WTHSSA Trigger: TGCTGAGGAATGGGTCCAGCAGCTGAAATTTATACT...AGTCTGGAGAAGTCTTGTGTCTGTCTGCAAGTGCCTTGGAACATGGAATGCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | CTACTGCTTGTATCTAATGTAACCCATCACTGCCTGCTCAATCTGACATCAGAGAATTCACCTTTCTGTTaGTTGTCTTTATCGCTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: LLLVSNVTHHCLLNLTSENSPFC*LSLSLP Trigger: CGGGAGCGATAAAGACAAGCAACAGAAAGGTGAATT...CTCTGATGTCAGATTGAGCAGGCAGTGATGGGTTACATTAGATACAAGCAGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | AATTATTTGTGGCACTCTAAAAATAACTTACACCCAGCGACTAAGAGAAACAGCGGTCCTGGGCTGCAATaGGAGGAAACTGGTTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: NYLWHSKNNLHPATKRNSGPGLQ*EETGFH Trigger: ATGGAAACCAGTTTCCTCCCATTGCAGCCCAGGACC...GCTGTTTCTCTTAGTCGCTGGGTGTAAGTTATTTTTAGAGTGCCACAAATAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR TCA 90 bp | AATTATTTGTGGCACTCTAAAAATAACTTACACCCAGCGACTAAGAGAAACAGCAGAACACTGTTTTGCTaGGCGCACACCACCGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: NYLWHSKNNLHPATKRNSRTLFC*AHTTVS Trigger: AGAAACGGTGGTGTGCGCTCAGCAAAACAGTGTTCT...GCTGTTTCTCTTAGTCGCTGGGTGTAAGTTATTTTTAGAGTGCCACAAATAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | GAGTGGAACATTATTGTAAGATCTAATGGCAACAGAGTACAAATTCAGTACAGAGGTCCTGGGCTGCAATaGGAGGAAACTGGTTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: EWNIIVRSNGNRVQIQYRGPGLQ*EETGFH Trigger: ATGGAAACCAGTTTCCTCCCATTGCAGCCCAGGACC...TCTGTACTGAATTTGTACTCTGTTGCCATTAGATCTTACAATAATGTTCCACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR CCA 90 bp | AATTATTTGTGGCACTCTAAAAATAACTTACACCCAGCGACTAAGAGAAACAGCACAAAAGGAAGGTCCTaGGCTGCAATGGGAGGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: NYLWHSKNNLHPATKRNSTKGRS*AAMGGN Trigger: GTTTCCTCCCATTGCAGCCCAGGACCTTCCTTTTGT...GCTGTTTCTCTTAGTCGCTGGGTGTAAGTTATTTTTAGAGTGCCACAAATAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | CCTCTATCTGTAATTCAAGCACCGGTTTATTCTTTCTTACCTACAGCAGGTAAAAATTCACCTTTCTGTTaGTTGTCTTTATCGCTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: PLSVIQAPVYSFLPTAGKNSPFC*LSLSLP Trigger: CGGGAGCGATAAAGACAAGCAACAGAAAGGTGAATT...TTTACCTGCTGTAGGTAAGAAAGAATAAACCGGTGCTTGAATTACAGATAGAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | AATTATTTGTGGCACTCTAAAAATAACTTACACCCAGCGACTAAGAGAAACAGCATCTTTGGGAGAGGCTaGTGTAAACTGATAGATACG | + |
|
Preference number: 4 (lower is better) Translates to: NYLWHSKNNLHPATKRNSIFGRG*CKLIDT Trigger: CGTATCTATCAGTTTACAGCAGCCTCTCCCAAAGAT...GCTGTTTCTCTTAGTCGCTGGGTGTAAGTTATTTTTAGAGTGCCACAAATAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR GCA 90 bp | TTGGTTCCAGTCTTCTATCTCCCATGTATATTCACGTTTAGAAAAGAACAAAGGAGTATAAATTTCAGCTaGTGGACCCATTCCTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LVPVFYLPCIFTFRKEQRSINFS*WTHSSA Trigger: TGCTGAGGAATGGGTCCAGCAGCTGAAATTTATACT...CCTTTGTTCTTTTCTAAACGTGAATATACATGGGAGATAGAAGACTGGAACCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204778.3 |
||
| CDS TCA 90 bp | ATGCACACTGTCCCGACTTCCCTTCCCTTGCTCGTCCATCTTCACTaGAGCAGTGTCCTCTTCCTCCTCTGGGAGCTCCTCATAAATCTC | + |
|
Preference number: 5 (lower is better) Translates to: MHTVPTSLPLLVHLH*SSVLFLLWELLINL Trigger: GAGATTTATGAGGAGCTCCCAGAGGAGGAAGAGGACACTGCTTCAGTGAAGATGGACGAGCAAGGGAAGGGAAGTCGGGACAGTGTGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS CCA 90 bp | TCATCGATTGGCTGGCTCCTCTGCGGGCTGCTGACGGCAGCAGGATaGTCAACGTCATCATATAATTCTCCTCTTTCCTCATCATCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SSIGWLLCGLLTAAG*STSSYNSPLSSSSS Trigger: TGAGGATGATGAGGAAAGAGGAGAATTATATGATGACGTTGACCATCCTGCTGCCGTCAGCAGCCCGCAGAGGAGCCAGCCAATCGATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CAA 90 bp | GCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAAGCATCACCTTTGTCTaGAAATTCCTGAAGATAGAC | + |
|
Preference number: 5 (lower is better) Translates to: AAEAGMFTQRKVAPSRHSSITFV*KFLKID Trigger: GTCTATCTTCAGGAATTTCAAGACAAAGGTGATGCT...TGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CAA 90 bp | GCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCACTCAGGCCATCATAGCCATCTATaGCAAATTCACCTTTCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: AEAGMFTQRKVAPSRHSGHHSHL*QIHLSV Trigger: AACAGAAAGGTGAATTTGCAATAGATGGCTATGATG...GCCTGAGTGCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS TCA 90 bp | CCACAGACCCTGGTAAAAATTAGCGTAATCAGTGCTTTTATCTCCTaGGGTGTGATGCACACTGTCCCGACTTCCCTTCCCTTGCTCGTC | + |
|
Preference number: 5 (lower is better) Translates to: PQTLVKISVISAFIS*GVMHTVPTSLPLLV Trigger: GACGAGCAAGGGAAGGGAAGTCGGGACAGTGTGCATCACACCTCAGGAGATAAAAGCACTGATTACGCTAATTTTTACCAGGGTCTGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078214.8 ENSMUST00000203948.2 ENSMUST00000204778.3 |
||
| CDS-3UTR CAA 90 bp | GAATGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAGCAGGCCATCATAGCCATCTATaGCAAATTCACCTTTCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: EWQLRQECSPKGRWLRAGHHSHL*QIHLSV Trigger: AACAGAAAGGTGAATTTGCAATAGATGGCTATGATG...GCCTGCTCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS-3UTR CAA 90 bp | GTGGCTCCGAGCAGGCACTCAGGCATTCCATGTTCCAAGGCACTTGCAGACAGACACCAGCCATATCTATaGTATTCCTTGCTAAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: VAPSRHSGIPCSKALADRHQPYL*YSLLRM Trigger: CATTCTTAGCAAGGAATACAATAGATATGGCTGGTG...TCTGTCTGCAAGTGCCTTGGAACATGGAATGCCTGAGTGCCTGCTCGGAGCCAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS GCA 90 bp | TCAGGAATAACGTCGGATCCCAGGTCTTGTAGTATAAATTTCAGCTaGTGGACCCATTCCTCAGCATCTTTGGGAGAGGCTGCTGTAAAC | + |
|
Preference number: 5 (lower is better) Translates to: SGITSDPRSCSINFS*WTHSSASLGEAAVN Trigger: GTTTACAGCAGCCTCTCCCAAAGATGCTGAGGAATGGGTCCAGCAGCTGAAATTTATACTACAAGACCTGGGATCCGACGTTATTCCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS GCA 90 bp | ACTGAAGCAGTGTCCTCTTCCTCCTCTTGTAGTATAAATTTCAGCTaGTGGACCCATTCCTCAGCATCTTTGGGAGAGGCTGCTGTAAAC | + |
|
Preference number: 5 (lower is better) Translates to: TEAVSSSSSCSINFS*WTHSSASLGEAAVN Trigger: GTTTACAGCAGCCTCTCCCAAAGATGCTGAGGAATGGGTCCAGCAGCTGAAATTTATACTACAAGAGGAGGAAGAGGACACTGCTTCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203948.2 |
||
| CDS-3UTR CAA 90 bp | TACATCGAATGGCAGCTGAGGCAGGAATGTTCACCCAAAGGAAGGTGGCTCCGAAGCATCACCTTTGTCTaGAAATTCCTGAAGATAGAC | + |
|
Preference number: 5 (lower is better) Translates to: YIEWQLRQECSPKGRWLRSITFV*KFLKID Trigger: GTCTATCTTCAGGAATTTCAAGACAAAGGTGATGCT...TCGGAGCCACCTTCCTTTGGGTGAACATTCCTGCCTCAGCTGCCATTCGATGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS TCA 90 bp | GTTGCTTGTCTTTATCGCTCCCGTAATAATAGAACACTGTTTTGCTaGGCGCACACCACCGTTTCTGCCATTCAAACCCCAGAAAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: VACLYRSRNNRTLFC*AHTTVSAIQTPESC Trigger: ACAGCTTTCTGGGGTTTGAATGGCAGAAACGGTGGTGTGCGCTCAGCAAAACAGTGTTCTATTATTACGGGAGCGATAAAGACAAGCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS CCA 72 bp | GGCTGGCTCCTCTGCGGGCTGCTGACGGCAGCAGGATaGTCAACGTCATCATATAATTCTCCTCTTTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: GWLLCGLLTAAG*STSSYNSPLSS Trigger: TGAGGAAAGAGGAGAATTATATGATGACGTTGACCATCCTGCTGCCGTCAGCAGCCCGCAGAGGAGCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS GCA 72 bp | GTAGCCAGCCTTTATGACAAAAGGAAGGTCCTGGGCTaGAATGGGAGGAAACTGGTTTCCATCAGAGGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: VASLYDKRKVLG*NGRKLVSIRGA Trigger: GGCCCCTCTGATGGAAACCAGTTTCCTCCCATTGCAGCCCAGGACCTTCCTTTTGTCATAAAGGCTGGCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS GCA 72 bp | ACGTCGGATCCCAGGTCTTGTAGTATAAATTTCAGCTaGTGGACCCATTCCTCAGCATCTTTGGGAGAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: TSDPRSCSINFS*WTHSSASLGEA Trigger: AGCCTCTCCCAAAGATGCTGAGGAATGGGTCCAGCAGCTGAAATTTATACTACAAGACCTGGGATCCGACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
||
| CDS GCA 72 bp | GTGTCCTCTTCCTCCTCTTGTAGTATAAATTTCAGCTaGTGGACCCATTCCTCAGCATCTTTGGGAGAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: VSSSSSCSINFS*WTHSSASLGEA Trigger: AGCCTCTCCCAAAGATGCTGAGGAATGGGTCCAGCAGCTGAAATTTATACTACAAGAGGAGGAAGAGGACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203948.2 |
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| CDS TCA 72 bp | CTTTATCGCTCCCGTAATAATAGAACACTGTTTTGCTaGGCGCACACCACCGTTTCTGCCATTCAAACCCCA | + |
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Preference number: 6 (lower is better) Translates to: LYRSRNNRTLFC*AHTTVSAIQTP Trigger: TGGGGTTTGAATGGCAGAAACGGTGGTGTGCGCTCAGCAAAACAGTGTTCTATTATTACGGGAGCGATAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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| CDS TCA 72 bp | CTGGTAAAAATTAGCGTAATCAGTGCTTTTATCTCCTaGGGTGTGATGCACACTGTCCCGACTTCCCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LVKISVISAFIS*GVMHTVPTSLP Trigger: GGGAAGGGAAGTCGGGACAGTGTGCATCACACCTCAGGAGATAAAAGCACTGATTACGCTAATTTTTACCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078214.8 ENSMUST00000203948.2 ENSMUST00000204778.3 |
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| CDS CAA 72 bp | GTCATATTCATCGCCGTCCTCAGCATCACCTTTGTCTaGAAATTCCTGAAGATAGACAGACTTTACATCTTT | + |
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Preference number: 6 (lower is better) Translates to: VIFIAVLSITFV*KFLKIDRLYIF Trigger: AAAGATGTAAAGTCTGTCTATCTTCAGGAATTTCAAGACAAAGGTGATGCTGAGGACGGCGATGAATATGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078214.8 ENSMUST00000204778.3 |
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