Pregenerated sensors for SKA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020492Ensembl transcript IDs: ENSMUST00000020794.6
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTCTCAGAACAGTAATCTATCAGGCTCAGCCTGGTTGCACAGCATaGAATCCCAGAACTCAGGAGGGAGAGGCAGACAGAGTTCTGTGC | + |
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Preference number: 1 (lower is better) Translates to: ALRTVIYQAQPGCTA*NPRTQEGEADRVLC Trigger: GCACAGAACTCTGTCTGCCTCTCCCTCCTGAGTTCTGGGATTGCATGCTGTGCAACCAGGCTGAGCCTGATAGATTACTGTTCTGAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 90 bp | ATGCCCAGCGTGATAGCAAAGGCAGGCATCTTTAGGATTCAGAGCTaGTCTGGTCTACATAGTGAGCTCCAGGGCCAGCCAGAGCTACAT | + |
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Preference number: 1 (lower is better) Translates to: MPSVIAKAGIFRIQS*SGLHSELQGQPELH Trigger: ATGTAGCTCTGGCTGGCCCTGGAGCTCACTATGTAGACCAGACCAGCTCTGAATCCTAAAGATGCCTGCCTTTGCTATCACGCTGGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR TCA 90 bp | GGACCAGCTTTGTTTCTAGCACCCAGAGCAGAAGCAAGTGATCTCTaGATTCTAGGCCAGCCTGATCTATATCGGTCCAGACCAGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: GPALFLAPRAEASDL*ILGQPDLYRSRPAW Trigger: CCAGGCTGGTCTGGACCGATATAGATCAGGCTGGCCTAGAATTCAGAGATCACTTGCTTCTGCTCTGGGTGCTAGAAACAAAGCTGGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR TCA 90 bp | CCAGGGGATCTAACACCCATTTCTGGCCTCCCTGGGCACCAGGCATaGACATCAGGCACAGACAGATATGCAGGCAAAATACTCATGTAC | + |
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Preference number: 1 (lower is better) Translates to: PGDLTPISGLPGHQA*TSGTDRYAGKILMY Trigger: GTACATGAGTATTTTGCCTGCATATCTGTCTGTGCCTGATGTTCATGCCTGGTGCCCAGGGAGGCCAGAAATGGGTGTTAGATCCCCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 90 bp | ACAACTGTCTTTAGCTCCATTTCCAGGGGATCTAACACCCATTTCTaGCCTCCCTGGGCACCAGGCATGAACATCAGGCACAGACAGATA | + |
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Preference number: 1 (lower is better) Translates to: TTVFSSISRGSNTHF*PPWAPGMNIRHRQI Trigger: TATCTGTCTGTGCCTGATGTTCATGCCTGGTGCCCAGGGAGGCCAGAAATGGGTGTTAGATCCCCTGGAAATGGAGCTAAAGACAGTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR TCA 90 bp | AGATGGACACAGTTTCTCCTCCCTGTAATCACAACACTAAAGGGCTaGAGCAGGCAGGTCACCAAGGTACCTAGACAAACATGGACCATA | + |
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Preference number: 1 (lower is better) Translates to: RWTQFLLPVITTLKG*SRQVTKVPRQTWTI Trigger: TATGGTCCATGTTTGTCTAGGTACCTTGGTGACCTGCCTGCTTCAGCCCTTTAGTGTTGTGATTACAGGGAGGAGAAACTGTGTCCATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 90 bp | CAATGTCAAATATTATCCCTATTGACACCAAATCTGAGGCCAGCCTaGGATATGGAAGACCTTGTCACAGACAGACAGACAGACAATGCC | + |
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Preference number: 1 (lower is better) Translates to: QCQILSLLTPNLRPA*DMEDLVTDRQTDNA Trigger: GGCATTGTCTGTCTGTCTGTCTGTGACAAGGTCTTCCATATCCCAGGCTGGCCTCAGATTTGGTGTCAATAGGGATAATATTTGACATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR TCA 90 bp | TCCAGGCCGGGAGGGTCACAGAGTCTCAAGTCCTGGAAAACAAATGGAAGGGGAACAACACTAAAGGGCTaGAGCAGGCAGGTCACCAAG | + |
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Preference number: 2 (lower is better) Translates to: SRPGGSQSLKSWKTNGRGTTLKG*SRQVTK Trigger: CTTGGTGACCTGCCTGCTTCAGCCCTTTAGTGTTGT...TCCCCTTCCATTTGTTTTCCAGGACTTGAGACTCTGTGACCCTCCCGGCCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CCA 90 bp | TCCAGGCCGGGAGGGTCACAGAGTCTCAAGTCCTGGAAAACAAATGGAAGGGGACTCTGTAGACCAGGCTaGCCTCAAAGTCAGAAATTC | + |
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Preference number: 2 (lower is better) Translates to: SRPGGSQSLKSWKTNGRGLCRPG*PQSQKF Trigger: GAATTTCTGACTTTGAGGCCAGCCTGGTCTACAGAG...TCCCCTTCCATTTGTTTTCCAGGACTTGAGACTCTGTGACCCTCCCGGCCTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR TCA 90 bp | TCCAGGCCGGGAGGGTCACAGAGTCTCAAGTCCTGGAAAACAAATGGAAGGGGACGTGTGGATTTTGTTTaGAAGCAAGTCTTGCTGTGT | + |
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Preference number: 2 (lower is better) Translates to: SRPGGSQSLKSWKTNGRGRVDFV*KQVLLC Trigger: ACACAGCAAGACTTGCTTTCAAACAAAATCCACACG...TCCCCTTCCATTTGTTTTCCAGGACTTGAGACTCTGTGACCCTCCCGGCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CCA 90 bp | GATATGGAAGACCTTGTCACAGACAGACAGACAGACAATGCCCAGCGTGATAGCCCCAATCTCTGCAGTTaGTCTTCTTTCCACCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: DMEDLVTDRQTDNAQRDSPNLCS*SSFHQP Trigger: AGGCTGGTGGAAAGAAGACCAACTGCAGAGATTGGG...GCTATCACGCTGGGCATTGTCTGTCTGTCTGTCTGTGACAAGGTCTTCCATATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CCA 90 bp | TCCAGGCCGGGAGGGTCACAGAGTCTCAAGTCCTGGAAAACAAATGGAAGGGGACACACACACACACACTaGATAATAGCAGATGTGTCA | + |
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Preference number: 2 (lower is better) Translates to: SRPGGSQSLKSWKTNGRGHTHTH*IIADVS Trigger: TGACACATCTGCTATTATCCAGTGTGTGTGTGTGTG...TCCCCTTCCATTTGTTTTCCAGGACTTGAGACTCTGTGACCCTCCCGGCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CCA 90 bp | TCCAGGCCGGGAGGGTCACAGAGTCTCAAGTCCTGGAAAACAAATGGAAGGGGAGTACCTAGACAAACATaGACCATAGAAGGACTCTGT | + |
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Preference number: 2 (lower is better) Translates to: SRPGGSQSLKSWKTNGRGVPRQT*TIEGLC Trigger: ACAGAGTCCTTCTATGGTCCATGTTTGTCTAGGTAC...TCCCCTTCCATTTGTTTTCCAGGACTTGAGACTCTGTGACCCTCCCGGCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR TCA 90 bp | GTGTGGATTTTGTTTGAAAGCAAGTCTTGCTGTGTGGCCCGACTCACCTGGAACGTACGTAAGGCAAGTTaGATTCCAGGCCATCATGAA | + |
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Preference number: 2 (lower is better) Translates to: VWILFESKSCCVARLTWNVRKAS*IPGHHE Trigger: TTCATGATGGCCTGGAATTCAACTTGCCTTACGTAC...GTTCCAGGTGAGTCGGGCCACACAGCAAGACTTGCTTTCAAACAAAATCCACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CAA 90 bp | GGTATCCCAGCACTCAGGAAGTACCAATGTCAAATATTATCCCTATaGACACCAAATCTGAGGCCAGCCTGGGATATGGAAGACCTTGTC | + |
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Preference number: 2 (lower is better) Translates to: GIPALRKYQCQILSL*TPNLRPAWDMEDLV Trigger: GACAAGGTCTTCCATATCCCAGGCTGGCCTCAGATTTGGTGTCAATAGGGATAATATTTGACATTGGTACTTCCTGAGTGCTGGGATACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CCA 90 bp | ACAAAAACAAACAGATGGACACAGTTTCTCCTCCCTGTAATCACAACACTAAAGGGCCAGCCTGGGATATaGAAGACCTTGTCACAGACA | + |
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Preference number: 2 (lower is better) Translates to: TKTNRWTQFLLPVITTLKGQPGI*KTLSQT Trigger: TGTCTGTGACAAGGTCTTCCATATCCCAGGCTGGCC...CTTTAGTGTTGTGATTACAGGGAGGAGAAACTGTGTCCATCTGTTTGTTTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR GCA 90 bp | ACAAAAACAAACAGATGGACACAGTTTCTCCTCCCTGTAATCACAACACTAAAGGTCTCGCCCAATCTCTaGAGTTGGTCTTCTTTCCAC | + |
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Preference number: 2 (lower is better) Translates to: TKTNRWTQFLLPVITTLKVSPNL*SWSSFH Trigger: GTGGAAAGAAGACCAACTGCAGAGATTGGGCGAGAC...CTTTAGTGTTGTGATTACAGGGAGGAGAAACTGTGTCCATCTGTTTGTTTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR GCA 90 bp | ACAAAAACAAACAGATGGACACAGTTTCTCCTCCCTGTAATCACAACACTAAAGTACACAAACCAGACGTaGTTCTGCACACTGGGTATC | + |
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Preference number: 2 (lower is better) Translates to: TKTNRWTQFLLPVITTLKYTNQT*FCTLGI Trigger: GATACCCAGTGTGCAGAAGCACGTCTGGTTTGTGTA...CTTTAGTGTTGTGATTACAGGGAGGAGAAACTGTGTCCATCTGTTTGTTTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CAA 90 bp | CTACATAGTGAGCTCCAGGGCCAGCCAGAGCTACATAGTGAAACCTaGTCTCAAAAGAGCAAACAACACCTGAATTTTTATACAAGTATT | + |
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Preference number: 2 (lower is better) Translates to: LHSELQGQPELHSET*SQKSKQHLNFYTSI Trigger: AATACTTGTATAAAAATTCAGGTGTTGTTTGCTCTTTTGAGACAAGGTTTCACTATGTAGCTCTGGCTGGCCCTGGAGCTCACTATGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CAA 90 bp | TGCTGGGTATCAGTATTTACATTGCTTTATTTCCATCCCATCCTTTaGGTTTTCAGTCACAGGACATCTACGCTTCTTACAATTTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: CWVSVFTLLYFHPIL*VFSHRTSTLLTISS Trigger: TGAGGAAATTGTAAGAAGCGTAGATGTCCTGTGACTGAAAACCAAAAGGATGGGATGGAAATAAAGCAATGTAAATACTGATACCCAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 72 bp | CAGGGTTGGGATGTGGCTCAGCTGAGCCGTGCTAGCTaGTACTACACAAACCAGACGTGCTTCTGCACACTG | + |
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Preference number: 3 (lower is better) Translates to: QGWDVAQLSRAS*YYTNQTCFCTL Trigger: CAGTGTGCAGAAGCACGTCTGGTTTGTGTAGTACCAGCTAGCACGGCTCAGCTGAGCCACATCCCAACCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR GCA 72 bp | TCATCAGCCCCGCCTCTAGACGTCTCGCCCAATCTCTaGAGTTGGTCTTCTTTCCACCAGCCTTCCTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: SSAPPLDVSPNL*SWSSFHQPSSL Trigger: TAAAGAGGAAGGCTGGTGGAAAGAAGACCAACTGCAGAGATTGGGCGAGACGTCTAGAGGCGGGGCTGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 72 bp | TTTAGCTCCATTTCCAGGGGATCTAACACCCATTTCTaGCCTCCCTGGGCACCAGGCATGAACATCAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: FSSISRGSNTHF*PPWAPGMNIRH Trigger: GTGCCTGATGTTCATGCCTGGTGCCCAGGGAGGCCAGAAATGGGTGTTAGATCCCCTGGAAATGGAGCTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CAA 90 bp | GTGTGGATTTTGTTTGAAAGCAAGTCTTGCTGTGTGGCCCGACTCACCTGGAACTCAGGCTCAGCCTGGTaGCACAGCATGCAATCCCAG | + |
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Preference number: 3 (lower is better) Translates to: VWILFESKSCCVARLTWNSGSAW*HSMQSQ Trigger: CTGGGATTGCATGCTGTGCAACCAGGCTGAGCCTGA...GTTCCAGGTGAGTCGGGCCACACAGCAAGACTTGCTTTCAAACAAAATCCACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 72 bp | GTGATAGCAAAGGCAGGCATCTTTAGGATTCAGAGCTaGTCTGGTCTACATAGTGAGCTCCAGGGCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: VIAKAGIFRIQS*SGLHSELQGQP Trigger: TGGCTGGCCCTGGAGCTCACTATGTAGACCAGACCAGCTCTGAATCCTAAAGATGCCTGCCTTTGCTATCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CAA 90 bp | GATATGGAAGACCTTGTCACAGACAGACAGACAGACAATGCCCAGCGTGATAGCGCCCAATCTCTGCAGTaGGTCTTCTTTCCACCAGCC | + |
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Preference number: 3 (lower is better) Translates to: DMEDLVTDRQTDNAQRDSAQSLQ*VFFPPA Trigger: GGCTGGTGGAAAGAAGACCAACTGCAGAGATTGGGC...GCTATCACGCTGGGCATTGTCTGTCTGTCTGTCTGTGACAAGGTCTTCCATATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR GCA 72 bp | CATTCACACGTGTGGATTTTGTTTGAAAGCAAGTCTTaGTGTGTGGCCCGACTCACCTGGAACTCCATGGCC | + |
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Preference number: 3 (lower is better) Translates to: HSHVWILFESKS*CVARLTWNSMA Trigger: GGCCATGGAGTTCCAGGTGAGTCGGGCCACACAGCAAGACTTGCTTTCAAACAAAATCCACACGTGTGAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR TCA 72 bp | CAGTTTCTCCTCCCTGTAATCACAACACTAAAGGGCTaGAGCAGGCAGGTCACCAAGGTACCTAGACAAACA | + |
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Preference number: 3 (lower is better) Translates to: QFLLPVITTLKG*SRQVTKVPRQT Trigger: TGTTTGTCTAGGTACCTTGGTGACCTGCCTGCTTCAGCCCTTTAGTGTTGTGATTACAGGGAGGAGAAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CAA 90 bp | GATATGGAAGACCTTGTCACAGACAGACAGACAGACAATGCCCAGCGTGATAGCTTCCATCCCATCCTTTaGGTTTTCAGTCACAGGACA | + |
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Preference number: 3 (lower is better) Translates to: DMEDLVTDRQTDNAQRDSFHPIL*VFSHRT Trigger: TGTCCTGTGACTGAAAACCAAAAGGATGGGATGGAA...GCTATCACGCTGGGCATTGTCTGTCTGTCTGTCTGTGACAAGGTCTTCCATATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR-3UTR CAA 90 bp | GTCTCCAGACACGCCAACAAGAAGGCACAAGATCCCATTACAGATGGCTGTGAGCAAATATTATCCCTATaGACACCAAATCTGAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: VSRHANKKAQDPITDGCEQILSL*TPNLRP Trigger: TGGCCTCAGATTTGGTGTCAATAGGGATAATATTTG...CTCACAGCCATCTGTAATGGGATCTTGTGCCTTCTTGTTGGCGTGTCTGGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR TCA 72 bp | TTGTTTCTAGCACCCAGAGCAGAAGCAAGTGATCTCTaGATTCTAGGCCAGCCTGATCTATATCGGTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: LFLAPRAEASDL*ILGQPDLYRSR Trigger: TCTGGACCGATATAGATCAGGCTGGCCTAGAATTCAGAGATCACTTGCTTCTGCTCTGGGTGCTAGAAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 72 bp | ATATTATCCCTATTGACACCAAATCTGAGGCCAGCCTaGGATATGGAAGACCTTGTCACAGACAGACAGACA | + |
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Preference number: 3 (lower is better) Translates to: ILSLLTPNLRPA*DMEDLVTDRQT Trigger: TGTCTGTCTGTCTGTGACAAGGTCTTCCATATCCCAGGCTGGCCTCAGATTTGGTGTCAATAGGGATAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CCA 72 bp | TATAGTACCTTCTTGACTCCTCTCAGCCTACTAAACTaGTTTTCTGTGCACCTCTCAGTATATACCTTAAGC | + |
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Preference number: 3 (lower is better) Translates to: YSTFLTPLSLLN*FSVHLSVYTLS Trigger: GCTTAAGGTATATACTGAGAGGTGCACAGAAAACCAGTTTAGTAGGCTGAGAGGAGTCAAGAAGGTACTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS-3UTR CCA 90 bp | TCCAGGCCGGGAGGGTCACAGAGTCTCAAGTCCTGGAAAACAAATGGAAGGGGACACAAATGCAGCTCTTaGTCTCCTTTTGCTCAACAG | + |
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Preference number: 4 (lower is better) Translates to: SRPGGSQSLKSWKTNGRGHKCSS*SPFAQQ Trigger: CTGTTGAGCAAAAGGAGACCAAGAGCTGCATTTGTG...TCCCCTTCCATTTGTTTTCCAGGACTTGAGACTCTGTGACCCTCCCGGCCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS-3UTR GCA 90 bp | GTCTCCAGACACGCCAACAAGAAGGCACAAGATCCCATTACAGATGGCTGTGAGCTCTTGGTCTCCTTTTaGTCAACAGAAACTGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: VSRHANKKAQDPITDGCELLVSF*STETAL Trigger: TAAGGCAGTTTCTGTTGAGCAAAAGGAGACCAAGAG...CTCACAGCCATCTGTAATGGGATCTTGTGCCTTCTTGTTGGCGTGTCTGGAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS-3UTR TCA 90 bp | GATATGGAAGACCTTGTCACAGACAGACAGACAGACAATGCCCAGCGTGATAGCATTTTTCTCTCCTGCTaGATGTGGGTGATTAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: DMEDLVTDRQTDNAQRDSIFLSC*MWVISL Trigger: AAGACTAATCACCCACATTCAGCAGGAGAGAAAAAT...GCTATCACGCTGGGCATTGTCTGTCTGTCTGTCTGTGACAAGGTCTTCCATATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CAA 72 bp | ACAAATGGAAGGGGAAAACATTCACACGTGTGGATTTaGTTTGAAAGCAAGTCTTGCTGTGTGGCCCGACTC | + |
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Preference number: 4 (lower is better) Translates to: TNGRGKHSHVWI*FESKSCCVARL Trigger: GAGTCGGGCCACACAGCAAGACTTGCTTTCAAACAAAATCCACACGTGTGAATGTTTTCCCCTTCCATTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS-3UTR GCA 90 bp | GATATGGAAGACCTTGTCACAGACAGACAGACAGACAATGCCCAGCGTGATAGCAGCTCCAGGTTTGTTTaGTTTTGTAGTTCTTGTATC | + |
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Preference number: 4 (lower is better) Translates to: DMEDLVTDRQTDNAQRDSSSRFV*FCSSCI Trigger: GATACAAGAACTACAAAAGCAAACAAACCTGGAGCT...GCTATCACGCTGGGCATTGTCTGTCTGTCTGTCTGTGACAAGGTCTTCCATATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CAA 72 bp | GAGCTCCAGGGCCAGCCAGAGCTACATAGTGAAACCTaGTCTCAAAAGAGCAAACAACACCTGAATTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: ELQGQPELHSET*SQKSKQHLNFY Trigger: ATAAAAATTCAGGTGTTGTTTGCTCTTTTGAGACAAGGTTTCACTATGTAGCTCTGGCTGGCCCTGGAGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| 3UTR CAA 72 bp | GCACTCAGGAAGTACCAATGTCAAATATTATCCCTATaGACACCAAATCTGAGGCCAGCCTGGGATATGGAA | + |
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Preference number: 4 (lower is better) Translates to: ALRKYQCQILSL*TPNLRPAWDME Trigger: TTCCATATCCCAGGCTGGCCTCAGATTTGGTGTCAATAGGGATAATATTTGACATTGGTACTTCCTGAGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS-3UTR CAA 90 bp | TTCAGAGCTGGTCTGGTCTACATAGTGAGCTCCAGGGCCAGCCAGAGCTACATAGAGTTAGCTCCAGGTTaGTTTGCTTTTGTAGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FRAGLVYIVSSRASQSYIELAPG*FAFVVL Trigger: AAGAACTACAAAAGCAAACAAACCTGGAGCTAACTC...TATGTAGCTCTGGCTGGCCCTGGAGCTCACTATGTAGACCAGACCAGCTCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS GCA 90 bp | GCAGCTTTCTCTTCTTCAGTCAGTAGAGTTAGCTCCAGGTTTGTTTaGTTTTGTAGTTCTTGTATCATGGTCATTGTCTTGTTCAAAGTA | + |
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Preference number: 5 (lower is better) Translates to: AAFSSSVSRVSSRFV*FCSSCIMVIVLFKV Trigger: TACTTTGAACAAGACAATGACCATGATACAAGAACTACAAAAGCAAACAAACCTGGAGCTAACTCTACTGACTGAAGAAGAGAAAGCTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS-3UTR CAA 90 bp | GGTATCAGTATTTACATTGCTTTATTTCCATCCCATCCTTTTGGTTTTCAGTCAATCATGGTCATTGTCTaGTTCAAAGTAGCACAAATG | + |
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Preference number: 5 (lower is better) Translates to: GISIYIALFPSHPFGFQSIMVIV*FKVAQM Trigger: CATTTGTGCTACTTTGAACAAGACAATGACCATGAT...TGACTGAAAACCAAAAGGATGGGATGGAAATAAAGCAATGTAAATACTGATACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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| CDS GCA 72 bp | TCTTCTTCAGTCAGTAGAGTTAGCTCCAGGTTTGTTTaGTTTTGTAGTTCTTGTATCATGGTCATTGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSSVSRVSSRFV*FCSSCIMVIVL Trigger: CAAGACAATGACCATGATACAAGAACTACAAAAGCAAACAAACCTGGAGCTAACTCTACTGACTGAAGAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020794.6 |
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