Pregenerated sensors for SKA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036223Ensembl transcript IDs: ENSMUST00000040188.16, ENSMUST00000177604.2, ENSMUST00000237276.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATCTTGTGGCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTaGTTGCCACCCTTCCCCTGGCTGTTCCCAGACGGTCTTTCCTCC | + |
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Preference number: 1 (lower is better) Translates to: YLVASHFILIHLLPK*LPPFPWLFPDGLSS Trigger: GGAGGAAAGACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGCCACAAGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR CCA 90 bp | TTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTaGCTGTTCCCAGACGGTCTTTCCTCCTACTCTATCACAGCGGTC | + |
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Preference number: 1 (lower is better) Translates to: FILIHLLPKCLPPFP*LFPDGLSSYSITAV Trigger: GACCGCTGTGATAGAGTAGGAGGAAAGACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR GCA 90 bp | CTGTTCCCAGACGGTCTTTCCTCCTACTCTATCACAGCGGTCCACTaGCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCT | + |
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Preference number: 1 (lower is better) Translates to: LFPDGLSSYSITAVH*LLCSSFLRTSPDPP Trigger: AGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGACCGCTGTGATAGAGTAGGAGGAAAGACCGTCTGGGAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR TCA 90 bp | GTCCTGTTACTGCATTTTTATATCTTGTGGCATCGCACTTTATCCTaGTCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTGGCTGT | + |
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Preference number: 1 (lower is better) Translates to: VLLLHFYILWHRTLS*STSCPSACHPSPGC Trigger: ACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGCCACAAGATATAAAAATGCAGTAACAGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 90 bp | GCCTCAGGTGATGACGTATCGGGTAAGTCCTCCCCCTCGGACCTCTaGCAGTCTGTGGCAATGCCGCAAAATGTGCATAATCACATAAAA | + |
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Preference number: 1 (lower is better) Translates to: ASGDDVSGKSSPSDL*QSVAMPQNVHNHIK Trigger: TTTTATGTGATTATGCACATTTTGCGGCATTGCCACAGACTGTCAGAGGTCCGAGGGGGAGGACTTACCCGATACGTCATCACCTGAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237276.2 |
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| 3UTR TCA 90 bp | CAGGTTCCACACGAGTCAGTCTTCCTAACTGGCTTACTGTGCTTGTaGGCTCCAGCTTCACCCACGTTCCTAAAGGCAGTACGTTTTGAA | + |
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Preference number: 1 (lower is better) Translates to: QVPHESVFLTGLLCL*APASPTFLKAVRFE Trigger: TTCAAAACGTACTGCCTTTAGGAACGTGGGTGAAGCTGGAGCTCACAAGCACAGTAAGCCAGTTAGGAAGACTGACTCGTGTGGAACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR TCA 90 bp | CTAGTGCCCGCCTTGAAGGCGCCCAAGAATCACCTCACTAGAATCTaGGCAAAAGATGTTCTGATCAGAAAAATGTTTCAAAGGCGTTTG | + |
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Preference number: 1 (lower is better) Translates to: LVPALKAPKNHLTRI*AKDVLIRKMFQRRL Trigger: CAAACGCCTTTGAAACATTTTTCTGATCAGAACATCTTTTGCTCAGATTCTAGTGAGGTGATTCTTGGGCGCCTTCAAGGCGGGCACTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 90 bp | ATCCATATCGTGAGGCACAGTGGCCATGCTTACAACGATGTAAAATaGAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGG | + |
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Preference number: 1 (lower is better) Translates to: IHIVRHSGHAYNDVK*KGIKGKFRSRCGGW Trigger: CCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTCATTTTACATCGTTGTAAGCATGGCCACTGTGCCTCACGATATGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR GCA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTCCTGCCCAAGTGCTTaGCACCCTTCCCCTGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: ASHFILIHLLPKCLPPFPSCPSA*HPSPGC Trigger: ACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGA...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR TCA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCGGCTTACTGTGCTTGTaGGCTCCAGCTTCACCCACG | + |
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Preference number: 2 (lower is better) Translates to: ASHFILIHLLPKCLPPFPGLLCL*APASPT Trigger: CGTGGGTGAAGCTGGAGCTCACAAGCACAGTAAGCC...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR CAA 90 bp | CTTGTGGCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTaGCCACCCTTCCCCTGGCTGTTCCCAGACGGTCTTTCCTCCTAC | + |
|
Preference number: 2 (lower is better) Translates to: LVASHFILIHLLPKC*PPFPWLFPDGLSSY Trigger: GTAGGAGGAAAGACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGCCACAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR TCA 90 bp | GTGATGACGTATCGGGTAAGTCCTCCCCCTCGGACCTCTGACAGTCTGTGGCAACTCCTCCTGGCCTCATaGTCCCCCGACTCCTATACA | + |
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Preference number: 2 (lower is better) Translates to: VMTYRVSPPPRTSDSLWQLLLAS*SPDSYT Trigger: TGTATAGGAGTCGGGGGATCATGAGGCCAGGAGGAG...TTGCCACAGACTGTCAGAGGTCCGAGGGGGAGGACTTACCCGATACGTCATCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000237276.2 |
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| 3UTR-3UTR TCA 90 bp | GTCCACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTGGCTTACTGTGCTTGTaGGCTCCAGCTTCACCCACG | + |
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Preference number: 2 (lower is better) Translates to: VHCLLCSSFLRTSPDPPPGLLCL*APASPT Trigger: CGTGGGTGAAGCTGGAGCTCACAAGCACAGTAAGCC...AGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR TCA 90 bp | ACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTGGCTGTTCCCAGACGGTCTTTTGTCAGCTTCCACGATaGAGTGATGACCTTTCGTGT | + |
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Preference number: 2 (lower is better) Translates to: TSCPSACHPSPGCSQTVFCQLPR*SDDLSC Trigger: ACACGAAAGGTCATCACTTCATCGTGGAAGCTGACA...AAAGACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237276.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTGGCCTCATCGCACTTTATCCTaGTCCACCTCCTGCCCAAGT | + |
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Preference number: 2 (lower is better) Translates to: LPSLFLFSPHFSRSSSWPHRTLS*STSCPS Trigger: ACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATG...AGGCCAGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGACAGGGGTATGCAGATCTCTGAGTTCAAGAGCAGCCTGGTCTACAGAGCAAGGGGTGTCCCTGCATaGAGGCCCAGAGCAGTGATT | + |
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Preference number: 2 (lower is better) Translates to: EDRGMQISEFKSSLVYRARGVPA*RPRAVI Trigger: AATCACTGCTCTGGGCCTCCATGCAGGGACACCCCT...TGCTCTGTAGACCAGGCTGCTCTTGAACTCAGAGATCTGCATACCCCTGTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR TCA 90 bp | GTCCACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTCATCGCACTTTATCCTaGTCCACCTCCTGCCCAAGT | + |
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Preference number: 2 (lower is better) Translates to: VHCLLCSSFLRTSPDPPPHRTLS*STSCPS Trigger: ACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATG...AGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR GCA 90 bp | AATGAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCTCCTGCCCAAGTGCTTaGCACCCTTCCCCTGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: NEKELRESLGPGVVGGTRSCPSA*HPSPGC Trigger: ACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGA...GCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR GCA 90 bp | GTCCACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTATCACAGCGGTCCACTaGCTTCTCTGTTCCTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: VHCLLCSSFLRTSPDPPPITAVH*LLCSSF Trigger: AAAAGAGGAACAGAGAAGGCAGTGGACCGCTGTGAT...AGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR TCA 90 bp | AATGAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCCGAAGCCTGTCGGCATaGCCAAACATCTCTAGCCTC | + |
|
Preference number: 2 (lower is better) Translates to: NEKELRESLGPGVVGGTRRSLSA*PNISSL Trigger: GAGGCTAGAGATGTTTGGTCATGCCGACAGGCTTCG...GCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGACAGGGGTATGCAGATCTCTGAGTTCAAGAGCAGCCTGGTCTACAGAGCAATCACAGCGGTCCACTaGCTTCTCTGTTCCTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: EDRGMQISEFKSSLVYRAITAVH*LLCSSF Trigger: AAAAGAGGAACAGAGAAGGCAGTGGACCGCTGTGAT...TGCTCTGTAGACCAGGCTGCTCTTGAACTCAGAGATCTGCATACCCCTGTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR GCA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCCACAGAGCTCATAGATaGTTTTGGTTGATGCATAAT | + |
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Preference number: 2 (lower is better) Translates to: ASHFILIHLLPKCLPPFPHRAHR*FWLMHN Trigger: ATTATGCATCAACCAAAAGCATCTATGAGCTCTGTG...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237276.2 |
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| 3UTR-3UTR CCA 90 bp | AATGAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCCCGGGAGCAGGAGAATaGCTCCAAACTGCAACTTCC | + |
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Preference number: 2 (lower is better) Translates to: NEKELRESLGPGVVGGTRPGAGE*LQTATS Trigger: GGAAGTTGCAGTTTGGAGCCATTCTCCTGCTCCCGG...GCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR CCA 90 bp | GTCCACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTTTCTCTATGGGCACGTaGAAAAACAGTAATCAGACT | + |
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Preference number: 2 (lower is better) Translates to: VHCLLCSSFLRTSPDPPPFSMGT*KNSNQT Trigger: AGTCTGATTACTGTTTTTCCACGTGCCCATAGAGAA...AGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR TCA 90 bp | ATGAGTCCTGTTACTGCATTTTTATATCTTGTGGCATCGCACTTTATCCTGATCGGCTTACTGTGCTTGTaGGCTCCAGCTTCACCCACG | + |
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Preference number: 2 (lower is better) Translates to: MSPVTAFLYLVASHFILIGLLCL*APASPT Trigger: CGTGGGTGAAGCTGGAGCTCACAAGCACAGTAAGCC...GATCAGGATAAAGTGCGATGCCACAAGATATAAAAATGCAGTAACAGGACTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR CCA 90 bp | ATGAGTCCTGTTACTGCATTTTTATATCTTGTGGCATCGCACTTTATCCTGATCTTGCCACCCTTCCCCTaGCTGTTCCCAGACGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: MSPVTAFLYLVASHFILILPPFP*LFPDGL Trigger: AAGACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAA...GATCAGGATAAAGTGCGATGCCACAAGATATAAAAATGCAGTAACAGGACTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR CCA 90 bp | AGGTCCAGGTGTGGTGGGTGGTACACGCCTTTAGTTCCAGCACTTAGAAGACAGCTCATACTATGCTCATaGTATCTGCACTTAACAGAA | + |
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Preference number: 2 (lower is better) Translates to: RSRCGGWYTPLVPALRRQLILCS*YLHLTE Trigger: TTCTGTTAAGTGCAGATACCATGAGCATAGTATGAG...CTGTCTTCTAAGTGCTGGAACTAAAGGCGTGTACCACCCACCACACCTGGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR TCA 90 bp | AACATCTCTAGCCTCATCAGGCAGCAGAACTTGACAGCTTTGACCAAGTGGTTTGCCTCCAGCTTATACTaGATGCATTTTAGGCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: NISSLIRQQNLTALTKWFASSLY*MHFRQA Trigger: AGCTTGCCTAAAATGCATTCAGTATAAGCTGGAGGC...AAACCACTTGGTCAAAGCTGTCAAGTTCTGCTGCCTGATGAGGCTAGAGATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR GCA 90 bp | AATGAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCAGAATGGCTCCAAACTaGAACTTCCTAGTCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: NEKELRESLGPGVVGGTRRMAPN*NFLVMA Trigger: AGCCATGACTAGGAAGTTGCAGTTTGGAGCCATTCT...GCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTTACTTCTGTAACAAACAAGGCCAGGAAATGGAGAAGCTAAAAACATACCTCCTCCTGGCCTCATaGTCCCCCGACTCCTATACA | + |
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Preference number: 2 (lower is better) Translates to: KFYFCNKQGQEMEKLKTYLLLAS*SPDSYT Trigger: TGTATAGGAGTCGGGGGATCATGAGGCCAGGAGGAG...GTATGTTTTTAGCTTCTCCATTTCCTGGCCTTGTTTGTTACAGAAGTAAAACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR GCA 90 bp | ATGAGTCCTGTTACTGCATTTTTATATCTTGTGGCATCGCACTTTATCCTGATCATCACAGCGGTCCACTaGCTTCTCTGTTCCTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: MSPVTAFLYLVASHFILIITAVH*LLCSSF Trigger: AAAAGAGGAACAGAGAAGGCAGTGGACCGCTGTGAT...GATCAGGATAAAGTGCGATGCCACAAGATATAAAAATGCAGTAACAGGACTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR GCA 72 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTaGTTGCCACCCTTCCCCTGGCTGTTCCCAGACGGT | + |
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Preference number: 3 (lower is better) Translates to: ASHFILIHLLPK*LPPFPWLFPDG Trigger: ACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR TCA 72 bp | TTCTCCGCACTTCTCCAGATCCTCCTCCTGGCCTCATaGTCCCCCGACTCCTATACACACACAGGTTCCACA | + |
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Preference number: 3 (lower is better) Translates to: FSALLQILLLAS*SPDSYTHTGST Trigger: TGTGGAACCTGTGTGTGTATAGGAGTCGGGGGATCATGAGGCCAGGAGGAGGATCTGGAGAAGTGCGGAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR GCA 72 bp | GACGGTCTTTCCTCCTACTCTATCACAGCGGTCCACTaGCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: DGLSSYSITAVH*LLCSSFLRTSP Trigger: TGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGACCGCTGTGATAGAGTAGGAGGAAAGACCGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR CAA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCGCAGTGCCTGAATATTaGCTGAAAGGAAGGGATTTT | + |
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Preference number: 3 (lower is better) Translates to: ASHFILIHLLPKCLPPFPAVPEY*LKGRDF Trigger: AAAATCCCTTCCTTTCAGCAAATATTCAGGCACTGC...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR CAA 90 bp | AGGTCCAGGTGTGGTGGGTGGTACACGCCTTTAGTTCCAGCACTTAGAAGACAGAGAAAGCAACAGAACTaGGCAGCTTTAGCCATGTGG | + |
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Preference number: 3 (lower is better) Translates to: RSRCGGWYTPLVPALRRQRKQQN*AALAMW Trigger: CCACATGGCTAAAGCTGCCAAGTTCTGTTGCTTTCT...CTGTCTTCTAAGTGCTGGAACTAAAGGCGTGTACCACCCACCACACCTGGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 72 bp | CACGAGTCAGTCTTCCTAACTGGCTTACTGTGCTTGTaGGCTCCAGCTTCACCCACGTTCCTAAAGGCAGTA | + |
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Preference number: 3 (lower is better) Translates to: HESVFLTGLLCL*APASPTFLKAV Trigger: TACTGCCTTTAGGAACGTGGGTGAAGCTGGAGCTCACAAGCACAGTAAGCCAGTTAGGAAGACTGACTCGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTGGCCTGCAGTGCCTGAATATTaGCTGAAAGGAAGGGATTTT | + |
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Preference number: 3 (lower is better) Translates to: LPSLFLFSPHFSRSSSWPAVPEY*LKGRDF Trigger: AAAATCCCTTCCTTTCAGCAAATATTCAGGCACTGC...AGGCCAGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR-3UTR CAA 90 bp | GAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCCTTAACTCATGCAGAGGCTaGACAGGGCAGTGCCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: EKELRESLGPGVVGGTRLNSCRG*TGQCLN Trigger: ATTCAGGCACTGCCCTGTCAAGCCTCTGCATGAGTT...AAGGCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 72 bp | CTGCATTTTTATATCTTGTGGCATCGCACTTTATCCTaGTCCACCTCCTGCCCAAGTGCTTGCCACCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LHFYILWHRTLS*STSCPSACHPS Trigger: GGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGCCACAAGATATAAAAATGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR CCA 72 bp | ACAGGGGTATGCAGATCTCTGAGTTCAAGAGCAGCCTaGTCTACAGAGCAAGTTCCAAGACAGCCATGCTTA | + |
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Preference number: 3 (lower is better) Translates to: TGVCRSLSSRAA*STEQVPRQPCL Trigger: TAAGCATGGCTGTCTTGGAACTTGCTCTGTAGACCAGGCTGCTCTTGAACTCAGAGATCTGCATACCCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR CCA 72 bp | GAATGCATTTTAGGCAAGCTGTTCTCTATGGGCACGTaGAAAAACAGTAATCAGACTTTACGCCACAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: ECILGKLFSMGT*KNSNQTLRHRG Trigger: TCCTCTGTGGCGTAAAGTCTGATTACTGTTTTTCCACGTGCCCATAGAGAACAGCTTGCCTAAAATGCATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 72 bp | AGTATCTCAATGTACTTCAGAGCCTCCAGCTTATACTaGATGCATTTTAGGCAAGCTGTTCTCTATGGGCAC | + |
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Preference number: 3 (lower is better) Translates to: SISMYFRASSLY*MHFRQAVLYGH Trigger: GTGCCCATAGAGAACAGCTTGCCTAAAATGCATTCAGTATAAGCTGGAGGCTCTGAAGTACATTGAGATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 72 bp | ATGTTTCAAAGGCGTTTGAAAGCTACAGTCAAGAACTaGGTTCAACACAAGACGCACCCTTACCACTTAGGA | + |
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Preference number: 3 (lower is better) Translates to: MFQRRLKATVKN*VQHKTHPYHLG Trigger: TCCTAAGTGGTAAGGGTGCGTCTTGTGTTGAACTCAGTTCTTGACTGTAGCTTTCAAACGCCTTTGAAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR TCA 72 bp | GCCTTGAAGGCGCCCAAGAATCACCTCACTAGAATCTaGGCAAAAGATGTTCTGATCAGAAAAATGTTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: ALKAPKNHLTRI*AKDVLIRKMFQ Trigger: TTGAAACATTTTTCTGATCAGAACATCTTTTGCTCAGATTCTAGTGAGGTGATTCTTGGGCGCCTTCAAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| 3UTR GCA 72 bp | TCTCTGGTAGAGATTTCTCTTCACAGAGCTCATAGATaGTTTTGGTTGATGCATAATCTTATATTTGCTAAC | + |
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Preference number: 3 (lower is better) Translates to: SLVEISLHRAHR*FWLMHNLIFAN Trigger: GTTAGCAAATATAAGATTATGCATCAACCAAAAGCATCTATGAGCTCTGTGAAGAGAAATCTCTACCAGAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237276.2 |
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| CDS-3UTR TCA 90 bp | AGGTCCAGGTGTGGTGGGTGGTACACGCCTTTAGTTCCAGCACTTAGAAGACAGTCCCCCTCGGACCTCTaGCAGTCTGTGGCAATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: RSRCGGWYTPLVPALRRQSPSDL*QSVAMP Trigger: CGGCATTGCCACAGACTGTCAGAGGTCCGAGGGGGA...CTGTCTTCTAAGTGCTGGAACTAAAGGCGTGTACCACCCACCACACCTGGACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CCA 90 bp | TATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTGGCTGTTCCCACCTCTGACAGTCTGTaGCAATGCCGCAAAATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YPDPPPAQVLATLPLAVPTSDSL*QCRKMC Trigger: GCACATTTTGCGGCATTGCCACAGACTGTCAGAGGT...GGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CCA 90 bp | ACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTGGCTGTTCCCAGACGGTCTTTTTCAAGGCAGGGTCCTaGCCAAGATTTCTTATCGAC | + |
|
Preference number: 4 (lower is better) Translates to: TSCPSACHPSPGCSQTVFFKAGS*PRFLID Trigger: GTCGATAAGAAATCTTGGCCAGGACCCTGCCTTGAA...AAAGACCGTCTGGGAACAGCCAGGGGAAGGGTGGCAAGCACTTGGGCAGGAGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| CDS-3UTR CCA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCTTCAAGGCAGGGTCCTaGCCAAGATTTCTTATCGAC | + |
|
Preference number: 4 (lower is better) Translates to: ASHFILIHLLPKCLPPFPFKAGS*PRFLID Trigger: GTCGATAAGAAATCTTGGCCAGGACCCTGCCTTGAA...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| CDS-3UTR TCA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCACAGAGCTCCTTGAGTaGACTGTTAGTTTGTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ASHFILIHLLPKCLPPFPTELLE*TVSLFL Trigger: CAAGAACAAACTAACAGTTCACTCAAGGAGCTCTGT...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | GAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCCTTCTCCTCAGCTTTGTCTaGCTCTTTAGGATCCGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: EKELRESLGPGVVGGTRLLLSFV*LFRIRL Trigger: GAGCCGGATCCTAAAGAGTCAGACAAAGCTGAGGAG...AAGGCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CCA 90 bp | ACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTGGCCCTATTTTACTTAAGGTaGTCTTCAAGGCAGGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TAFSVPLFSALLQILLLALFYLR*SSRQGP Trigger: AGGACCCTGCCTTGAAGACCACCTTAAGTAAAATAG...GGCCAGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| CDS-3UTR TCA 90 bp | AACATCTCTAGCCTCATCAGGCAGCAGAACTTGACAGCTTTGACCAAGTGGTTTCTCCTCAGCTTTGTCTaGCTCTTTAGGATCCGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: NISSLIRQQNLTALTKWFLLSFV*LFRIRL Trigger: GAGCCGGATCCTAAAGAGTCAGACAAAGCTGAGGAG...AAACCACTTGGTCAAAGCTGTCAAGTTCTGCTGCCTGATGAGGCTAGAGATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | ATGAGTCCTGTTACTGCATTTTTATATCTTGTGGCATCGCACTTTATCCTGATCTCCCCCTCGGACCTCTaGCAGTCTGTGGCAATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: MSPVTAFLYLVASHFILISPSDL*QSVAMP Trigger: CGGCATTGCCACAGACTGTCAGAGGTCCGAGGGGGA...GATCAGGATAAAGTGCGATGCCACAAGATATAAAAATGCAGTAACAGGACTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CCA 90 bp | GAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCCTTACCTCTGACAGTCTGTaGCAATGCCGCAAAATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: EKELRESLGPGVVGGTRLTSDSL*QCRKMC Trigger: GCACATTTTGCGGCATTGCCACAGACTGTCAGAGGT...AAGGCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | ACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTGGCCGCTCATTTACTGCAATaGTCTCATCTCCTATTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: TAFSVPLFSALLQILLLAAHLLQ*SHLLFY Trigger: GTAAAATAGGAGATGAGATCATTGCAGTAAATGAGC...GGCCAGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| CDS-3UTR TCA 90 bp | GAAGACAGGGGTATGCAGATCTCTGAGTTCAAGAGCAGCCTGGTCTACAGAGCAACAGAGCTCCTTGAGTaGACTGTTAGTTTGTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: EDRGMQISEFKSSLVYRATELLE*TVSLFL Trigger: CAAGAACAAACTAACAGTTCACTCAAGGAGCTCTGT...TGCTCTGTAGACCAGGCTGCTCTTGAACTCAGAGATCTGCATACCCCTGTCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | AGGTCCAGGTGTGGTGGGTGGTACACGCCTTTAGTTCCAGCACTTAGAAGACAGCAACTTTCAAAGCCGTaGATTCCTTTATGTCAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: RSRCGGWYTPLVPALRRQQLSKP*IPLCQL Trigger: AAGCTGACATAAAGGAATTCACGGCTTTGAAAGTTG...CTGTCTTCTAAGTGCTGGAACTAAAGGCGTGTACCACCCACCACACCTGGACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | AACATCTCTAGCCTCATCAGGCAGCAGAACTTGACAGCTTTGACCAAGTGGTTTTGTCAGCTTCCACGATaGAGTGATGACCTTTCGTGT | + |
|
Preference number: 4 (lower is better) Translates to: NISSLIRQQNLTALTKWFCQLPR*SDDLSC Trigger: ACACGAAAGGTCATCACTTCATCGTGGAAGCTGACA...AAACCACTTGGTCAAAGCTGTCAAGTTCTGCTGCCTGATGAGGCTAGAGATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR GCA 90 bp | GTCCACTGCCTTCTCTGTTCCTCTTTTCTCCGCACTTCTCCAGATCCTCCTCCTCACAGAGCTCATAGATaGTTTTGGTTGATGCATAAT | + |
|
Preference number: 4 (lower is better) Translates to: VHCLLCSSFLRTSPDPPPHRAHR*FWLMHN Trigger: ATTATGCATCAACCAAAAGCATCTATGAGCTCTGTG...AGGAGGAGGATCTGGAGAAGTGCGGAGAAAAGAGGAACAGAGAAGGCAGTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR GCA 90 bp | AATGAAAAGGAATTAAGGGAAAGTTTAGGTCCAGGTGTGGTGGGTGGTACACGCCACAGAGCTCATAGATaGTTTTGGTTGATGCATAAT | + |
|
Preference number: 4 (lower is better) Translates to: NEKELRESLGPGVVGGTRHRAHR*FWLMHN Trigger: ATTATGCATCAACCAAAAGCATCTATGAGCTCTGTG...GCGTGTACCACCCACCACACCTGGACCTAAACTTTCCCTTAATTCCTTTTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | AAGTTTTACTTCTGTAACAAACAAGGCCAGGAAATGGAGAAGCTAAAAACATACTGTCAGCTTCCACGATaGAGTGATGACCTTTCGTGT | + |
|
Preference number: 4 (lower is better) Translates to: KFYFCNKQGQEMEKLKTYCQLPR*SDDLSC Trigger: ACACGAAAGGTCATCACTTCATCGTGGAAGCTGACA...GTATGTTTTTAGCTTCTCCATTTCCTGGCCTTGTTTGTTACAGAAGTAAAACTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CCA 90 bp | AAGTTTTACTTCTGTAACAAACAAGGCCAGGAAATGGAGAAGCTAAAAACATACTTCAAGGCAGGGTCCTaGCCAAGATTTCTTATCGAC | + |
|
Preference number: 4 (lower is better) Translates to: KFYFCNKQGQEMEKLKTYFKAGS*PRFLID Trigger: GTCGATAAGAAATCTTGGCCAGGACCCTGCCTTGAA...GTATGTTTTTAGCTTCTCCATTTCCTGGCCTTGTTTGTTACAGAAGTAAAACTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| CDS-3UTR CCA 90 bp | AAGTTTTACTTCTGTAACAAACAAGGCCAGGAAATGGAGAAGCTAAAAACATACCTATTTTACTTAAGGTaGTCTTCAAGGCAGGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KFYFCNKQGQEMEKLKTYLFYLR*SSRQGP Trigger: AGGACCCTGCCTTGAAGACCACCTTAAGTAAAATAG...GTATGTTTTTAGCTTCTCCATTTCCTGGCCTTGTTTGTTACAGAAGTAAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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| CDS-3UTR TCA 90 bp | GATGAAGTGATGACCTTTCGTGTCCTTCGTTTCTTCATTAATAAATCTCTGGTAGCTCATTTACTGCAATaGTCTCATCTCCTATTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: DEVMTFRVLRFFINKSLVAHLLQ*SHLLFY Trigger: GTAAAATAGGAGATGAGATCATTGCAGTAAATGAGC...TACCAGAGATTTATTAATGAAGAAACGAAGGACACGAAAGGTCATCACTTCATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237276.2 |
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| CDS-3UTR TCA 90 bp | AAGTTTTACTTCTGTAACAAACAAGGCCAGGAAATGGAGAAGCTAAAAACATACCAACTTTCAAAGCCGTaGATTCCTTTATGTCAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: KFYFCNKQGQEMEKLKTYQLSKP*IPLCQL Trigger: AAGCTGACATAAAGGAATTCACGGCTTTGAAAGTTG...GTATGTTTTTAGCTTCTCCATTTCCTGGCCTTGTTTGTTACAGAAGTAAAACTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR TCA 90 bp | AACCCTGAACAAGGAACCAGACGTAAAGCTGTAATACATATCATATGTAATACAGCTCATTTACTGCAATaGTCTCATCTCCTATTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: NPEQGTRRKAVIHIICNTAHLLQ*SHLLFY Trigger: GTAAAATAGGAGATGAGATCATTGCAGTAAATGAGC...TGTATTACATATGATATGTATTACAGCTTTACGTCTGGTTCCTTGTTCAGGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CAA 90 bp | GCATCGCACTTTATCCTGATCCACCTCCTGCCCAAGTGCTTGCCACCCTTCCCCCCAGGCTCCTCAGCTTaGTCTGACTCTTTAGGATCC | + |
|
Preference number: 5 (lower is better) Translates to: ASHFILIHLLPKCLPPFPPGSSA*SDSLGS Trigger: GGATCCTAAAGAGTCAGACAAAGCTGAGGAGCCTGG...GGGGAAGGGTGGCAAGCACTTGGGCAGGAGGTGGATCAGGATAAAGTGCGATGC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CAA 90 bp | CTCATGCAGAGGCTTGACAGGGCAGTGCCTGAATATTTGCTGAAAGGAAGGGATGGAGGGACGTGTTCTTaGAGATGTTCCACATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: LMQRLDRAVPEYLLKGRDGGTCS*RCSTSS Trigger: TGAAGATGTGGAACATCTCAAAGAACACGTCCCTCC...ATCCCTTCCTTTCAGCAAATATTCAGGCACTGCCCTGTCAAGCCTCTGCATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CAA 90 bp | AACATCTCTAGCCTCATCAGGCAGCAGAACTTGACAGCTTTGACCAAGTGGTTTGGAGGGACGTGTTCTTaGAGATGTTCCACATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: NISSLIRQQNLTALTKWFGGTCS*RCSTSS Trigger: TGAAGATGTGGAACATCTCAAAGAACACGTCCCTCC...AAACCACTTGGTCAAAGCTGTCAAGTTCTGCTGCCTGATGAGGCTAGAGATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS-3UTR CAA 90 bp | AAGTTTTACTTCTGTAACAAACAAGGCCAGGAAATGGAGAAGCTAAAAACATACCCAGGCTCCTCAGCTTaGTCTGACTCTTTAGGATCC | + |
|
Preference number: 5 (lower is better) Translates to: KFYFCNKQGQEMEKLKTYPGSSA*SDSLGS Trigger: GGATCCTAAAGAGTCAGACAAAGCTGAGGAGCCTGG...GTATGTTTTTAGCTTCTCCATTTCCTGGCCTTGTTTGTTACAGAAGTAAAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 |
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| CDS CCA 72 bp | CCTATTTTACTTAAGGTGGTCTTCAAGGCAGGGTCCTaGCCAAGATTTCTTATCGACAGAATTTTCTTAATA | + |
|
Preference number: 6 (lower is better) Translates to: PILLKVVFKAGS*PRFLIDRIFLI Trigger: TATTAAGAAAATTCTGTCGATAAGAAATCTTGGCCAGGACCCTGCCTTGAAGACCACCTTAAGTAAAATAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040188.16 ENSMUST00000177604.2 ENSMUST00000237276.2 |
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