RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SIX6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021099

Ensembl transcript IDs: ENSMUST00000021519.7

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCGCGATGGATTCTCGCTTCTAGAGCCTTTAGGCCCGCGGGTCCCTaGCCACGGGGCTTCTGCCAGCGCCGTATTTGCTGGTCTTGTCCT +
Preference number: 1 (lower is better)
Translates to: SRWILASRAFRPAGP*PRGFCQRRICWSCP
Trigger: AGGACAAGACCAGCAAATACGGCGCTGGCAGAAGCCCCGTGGCCAGGGACCCGCGGGCCTAAAGGCTCTAGAAGCGAGAATCCATCGCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 90 bp GCTTCTAGAGCCTTTAGGCCCGCGGGTCCCTGGCCACGGGGCTTCTaGCAGCGCCGTATTTGCTGGTCTTGTCCTCTCTCTTTCTCTCTC +
Preference number: 1 (lower is better)
Translates to: ASRAFRPAGPWPRGF*QRRICWSCPLSFSL
Trigger: GAGAGAGAAAGAGAGAGGACAAGACCAGCAAATACGGCGCTGGCAGAAGCCCCGTGGCCAGGGACCCGCGGGCCTAAAGGCTCTAGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTaGAATCCTGCTAGGCTGATTCTAGCCTATTGTGAGGCGGGAGAA +
Preference number: 1 (lower is better)
Translates to: WSWIIRLRAMNFPLK*NPARLILAYCEAGE
Trigger: TTCTCCCGCCTCACAATAGGCTAGAATCAGCCTAGCAGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CCA 90 bp CTGATTCTAGCCTATTGTGAGGCGGGAGAACCTCGGGTGCAATTATaGTGTTGCTTTCTGAAACACTCTGTGTTTAAAAACAACAAAACA +
Preference number: 1 (lower is better)
Translates to: LILAYCEAGEPRVQL*CCFLKHSVFKNNKT
Trigger: TGTTTTGTTGTTTTTAAACACAGAGTGTTTCAGAAAGCAACACCATAATTGCACCCGAGGTTCTCCCGCCTCACAATAGGCTAGAATCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CCA 90 bp TCTGGCTCTGGATCATTCATAGCTGAAATGAGTTTCGGATGGAGCTaGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAAT +
Preference number: 1 (lower is better)
Translates to: SGSGSFIAEMSFGWS*IIRLRAMNFPLKCN
Trigger: ATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCATCCGAAACTCATTTCAGCTATGAATGATCCAGAGCCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 90 bp GTAAGTATCATTAAACATTGTTTTATACGGAGAAAGCTTAGTTCCTaGAGCCTTACTCTAATTCTGGAGAGGGTGGGTGTTTCCATCTGT +
Preference number: 1 (lower is better)
Translates to: VSIIKHCFIRRKLSS*SLTLILERVGVSIC
Trigger: ACAGATGGAAACACCCACCCTCTCCAGAATTAGAGTAAGGCTGCAGGAACTAAGCTTTCTCCGTATAAAACAATGTTTAATGATACTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 90 bp TGCCTGTCATTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGCCTaGATACTGTCTCCTATCTTAGTATTTCTCCTGGTGAAAATAATT +
Preference number: 1 (lower is better)
Translates to: CLSFLCSMLSGQYKA*ILSPILVFLLVKII
Trigger: AATTATTTTCACCAGGAGAAATACTAAGATAGGAGACAGTATGCAGGCTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CAA 90 bp TTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATaGGGTCAGGCCTCACCGCATGCCCCAGAGTCGCGATGGATTCTC +
Preference number: 2 (lower is better)
Translates to: LQPDPSGKAMRREVA*GQASPHAPESRWIL
Trigger: GAGAATCCATCGCGACTCTGGGGCATGCGGTGAGGCCTGACCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CAA 90 bp CTCAAGGGCAGGCTCTCAGAGTGCAGTTCTGTTCCAAAGGAGTCTTaGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCA +
Preference number: 2 (lower is better)
Translates to: LKGRLSECSSVPKES*QPDPSGKAMRREVA
Trigger: TGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGACTCCTTTGGAACAGAACTGCACTCTGAGAGCCTGCCCTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR GCA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTAGACTCCATGCTGCGTaGCCAGCAAAGGAAATAAGA +
Preference number: 2 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPRLHAA*PAKEIR
Trigger: TCTTATTTCCTTTGCTGGGCACGCAGCATGGAGTCT...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CCA 90 bp GATTTAGAAAATGCCTGTCATTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGCAGCGCCGTATTTGCTaGTCTTGTCCTCTCTCTTTC +
Preference number: 2 (lower is better)
Translates to: DLENACHFSVACFLVNIKQRRIC*SCPLSF
Trigger: GAAAGAGAGAGGACAAGACCAGCAAATACGGCGCTG...CTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCATTTTCTAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR TCA 90 bp TGCTCCTTGTCACCCAAAGAATCGACAGGGACTTTAGAAATCAAAAGATATAGCGTCCATCTTTTGCTATaGGAGTTTCAATTTGCAACA +
Preference number: 2 (lower is better)
Translates to: CSLSPKESTGTLEIKRYSVHLLL*EFQFAT
Trigger: TGTTGCAAATTGAAACTCTCATAGCAAAAGATGGAC...GCTATATCTTTTGATTTCTAAAGTCCCTGTCGATTCTTTGGGTGACAAGGAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CCA 90 bp TGCTCCTTGTCACCCAAAGAATCGACAGGGACTTTAGAAATCAAAAGATATAGCAAAGCCCTCGTGTCTTaGCATTTTTGTAAAATACGA +
Preference number: 2 (lower is better)
Translates to: CSLSPKESTGTLEIKRYSKALVS*HFCKIR
Trigger: TCGTATTTTACAAAAATGCCAAGACACGAGGGCTTT...GCTATATCTTTTGATTTCTAAAGTCCCTGTCGATTCTTTGGGTGACAAGGAGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 72 bp GCCTTTAGGCCCGCGGGTCCCTGGCCACGGGGCTTCTaGCAGCGCCGTATTTGCTGGTCTTGTCCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: AFRPAGPWPRGF*QRRICWSCPLS
Trigger: AGAGAGAGGACAAGACCAGCAAATACGGCGCTGGCAGAAGCCCCGTGGCCAGGGACCCGCGGGCCTAAAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CCA 72 bp ATTCTCGCTTCTAGAGCCTTTAGGCCCGCGGGTCCCTaGCCACGGGGCTTCTGCCAGCGCCGTATTTGCTGG +
Preference number: 3 (lower is better)
Translates to: ILASRAFRPAGP*PRGFCQRRICW
Trigger: CCAGCAAATACGGCGCTGGCAGAAGCCCCGTGGCCAGGGACCCGCGGGCCTAAAGGCTCTAGAAGCGAGAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 72 bp AATACCCGCAGGAGACTCAAGGGCAGGCTCTCAGAGTaGAGTTCTGTTCCAAAGGAGTCTTTGCAGCCAGAT +
Preference number: 3 (lower is better)
Translates to: NTRRRLKGRLSE*SSVPKESLQPD
Trigger: ATCTGGCTGCAAAGACTCCTTTGGAACAGAACTGCACTCTGAGAGCCTGCCCTTGAGTCTCCTGCGGGTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 72 bp GGCTCTCAGAGTGCAGTTCTGTTCCAAAGGAGTCTTTaGAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAG +
Preference number: 3 (lower is better)
Translates to: GSQSAVLFQRSL*SQILQEKQCEE
Trigger: CTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGACTCCTTTGGAACAGAACTGCACTCTGAGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CAA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTGGCCCAAACTGCTCCTaGTCACCCAAAGAATCGACA +
Preference number: 3 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPGPNCS*SPKEST
Trigger: TGTCGATTCTTTGGGTGACAAGGAGCAGTTTGGGCC...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CCA 72 bp GCCTATTGTGAGGCGGGAGAACCTCGGGTGCAATTATaGTGTTGCTTTCTGAAACACTCTGTGTTTAAAAAC +
Preference number: 3 (lower is better)
Translates to: AYCEAGEPRVQL*CCFLKHSVFKN
Trigger: GTTTTTAAACACAGAGTGTTTCAGAAAGCAACACCATAATTGCACCCGAGGTTCTCCCGCCTCACAATAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CAA 90 bp TGCTCCTTGTCACCCAAAGAATCGACAGGGACTTTAGAAATCAAAAGATATAGCCCGTATTTGCTGGTCTaGTCCTCTCTCTTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: CSLSPKESTGTLEIKRYSPYLLV*SSLFLS
Trigger: AGAGAGAAAGAGAGAGGACAAGACCAGCAAATACGG...GCTATATCTTTTGATTTCTAAAGTCCCTGTCGATTCTTTGGGTGACAAGGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR TCA 72 bp AAAGTTATACATATATATAACAGCGTCCTTTCGAAGTaGAATACCCGCAGGAGACTCAAGGGCAGGCTCTCA +
Preference number: 3 (lower is better)
Translates to: KVIHIYNSVLSK*NTRRRLKGRLS
Trigger: TGAGAGCCTGCCCTTGAGTCTCCTGCGGGTATTTCACTTCGAAAGGACGCTGTTATATATATGTATAACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CAA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGAAGTTGGAGAGACAATTaGAATAAGACTCCATGCTGC +
Preference number: 3 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRSWRDN*NKTPCC
Trigger: GCAGCATGGAGTCTTATTCAAATTGTCTCTCCAACT...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CAA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTGGTGCAATTATGGTGTaGCTTTCTGAAACACTCTGT +
Preference number: 3 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPGAIMV*LSETLC
Trigger: ACAGAGTGTTTCAGAAAGCAACACCATAATTGCACC...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 72 bp TTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGCCTaGATACTGTCTCCTATCTTAGTATTTCTCCTGGTG +
Preference number: 3 (lower is better)
Translates to: FLCSMLSGQYKA*ILSPILVFLLV
Trigger: CACCAGGAGAAATACTAAGATAGGAGACAGTATGCAGGCTTTATATTGACCAGAAAGCATGCTACAGAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 72 bp ATTAAACATTGTTTTATACGGAGAAAGCTTAGTTCCTaGAGCCTTACTCTAATTCTGGAGAGGGTGGGTGTT +
Preference number: 3 (lower is better)
Translates to: IKHCFIRRKLSS*SLTLILERVGV
Trigger: AACACCCACCCTCTCCAGAATTAGAGTAAGGCTGCAGGAACTAAGCTTTCTCCGTATAAAACAATGTTTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CCA 72 bp GGATCATTCATAGCTGAAATGAGTTTCGGATGGAGCTaGATTATAAGATTGAGAGCCATGAATTTTCCACTG +
Preference number: 3 (lower is better)
Translates to: GSFIAEMSFGWS*IIRLRAMNFPL
Trigger: CAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCATCCGAAACTCATTTCAGCTATGAATGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR TCA 72 bp CTGAAGAGTATTTGTTTGACTTGGGAATTACCTGTTTaGCCACAAAAGCTTCCTAAACCTGTCCATCTTTTG +
Preference number: 3 (lower is better)
Translates to: LKSICLTWELPV*PQKLPKPVHLL
Trigger: CAAAAGATGGACAGGTTTAGGAAGCTTTTGTGGTCAAACAGGTAATTCCCAAGTCAAACAAATACTCTTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR GCA 72 bp ACTGATTTAGAAAATGCCTGTCATTTCTCTGTAGCATaGTTTCTGGTCAATATAAAGCCTGCATACTGTCTC +
Preference number: 3 (lower is better)
Translates to: TDLENACHFSVA*FLVNIKPAYCL
Trigger: GAGACAGTATGCAGGCTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCATTTTCTAAATCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR TCA 72 bp CTTTATAACACATGTTTATGGGCTGATTCGGGTGATTaGGTAAATTGCTGTTTGAAGATCTGGGCTAATTTC +
Preference number: 3 (lower is better)
Translates to: LYNTCLWADSGD*VNCCLKIWANF
Trigger: GAAATTAGCCCAGATCTTCAAACAGCAATTTACTCAATCACCCGAATCAGCCCATAAACATGTGTTATAAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR-3UTR CAA 90 bp AGAATATTTTATATTTTAATGAAGGCTAGTCCCAAGGCAACGAACTTCCTGATGTGCTACATGCTTACCTaGAATGACCATAAGTTTCTG +
Preference number: 3 (lower is better)
Translates to: RIFYILMKASPKATNFLMCYMLT*NDHKFL
Trigger: CAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCA...CATCAGGAAGTTCGTTGCCTTGGGACTAGCCTTCATTAAAATATAAAATATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CAA 72 bp GATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATaGGGTCAGGCCTCACCGCATGCCCCAGAGTCGCGA +
Preference number: 4 (lower is better)
Translates to: DPSGKAMRREVA*GQASPHAPESR
Trigger: TCGCGACTCTGGGGCATGCGGTGAGGCCTGACCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR TCA 90 bp GTCTTTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATTGGGCACTGTCGCTGGATGTaGTGGAGATGGCCGAAGTGG +
Preference number: 4 (lower is better)
Translates to: VFAARSFRKSNAKRSSIGHCRWM*WRWPKW
Trigger: CCACTTCGGCCATCTCCATCACATCCAGCGACAGTG...CCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CCA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGAGGCTTCACAAGCTGCTaGGGCCACGGGCAGCGACCA +
Preference number: 4 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRGFTSC*GHGQRP
Trigger: TGGTCGCTGCCCGTGGCCCCAGCAGCTTGTGAAGCC...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CCA 90 bp GTCTTTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATTGGGGTCAGTCCGGTTGCCTaGGCGAGCTCTCGCTTTTTG +
Preference number: 4 (lower is better)
Translates to: VFAARSFRKSNAKRSSIGVSPVA*ASSRFL
Trigger: CAAAAAGCGAGAGCTCGCCCAGGCAACCGGACTGAC...CCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp GTCTTTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATTGGGAAAGCTCGCGGTAGTTaGCACCGTGGAAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: VFAARSFRKSNAKRSSIGKARGS*HRGKPR
Trigger: TCGTGGCTTTCCACGGTGGCAACTACCGCGAGCTTT...CCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTCCGAAGTGGCCGCCTTaGTCGACAGACTGGCAGCCG +
Preference number: 4 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPPKWPP*STDWQP
Trigger: CGGCTGCCAGTCTGTCGAGCAAGGCGGCCACTTCGG...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR TCA 90 bp GTCTTTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATTGGGTTGGGATATGGGTCCTaGAGGTACCACTCTCGAAGC +
Preference number: 4 (lower is better)
Translates to: VFAARSFRKSNAKRSSIGLGYGS*RYHSRS
Trigger: GCTTCGAGAGTGGTACCTTCAGGACCCATATCCCAA...CCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp TGCTCCTTGTCACCCAAAGAATCGACAGGGACTTTAGAAATCAAAAGATATAGCTCGAGCCACAGCGCCTaGAGCTTGGCGTGCGATTCC +
Preference number: 4 (lower is better)
Translates to: CSLSPKESTGTLEIKRYSSSHSA*SLACDS
Trigger: GGAATCGCACGCCAAGCTGCAGGCGCTGTGGCTCGA...GCTATATCTTTTGATTTCTAAAGTCCCTGTCGATTCTTTGGGTGACAAGGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp AGAATATTTTATATTTTAATGAAGGCTAGTCCCAAGGCAACGAACTTCCTGATGACCCGCCCGGGGCCCTaGGACAGAACCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RIFYILMKASPKATNFLMTRPGP*DRTCCW
Trigger: CCAGCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGT...CATCAGGAAGTTCGTTGCCTTGGGACTAGCCTTCATTAAAATATAAAATATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR TCA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGAGCCGCGTGCGCTCCTTaGAGCAGTGAGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRAACAP*SSESSV
Trigger: AACAGAAGACTCACTGCTTCAAGGAGCGCACGCGGC...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CCA 90 bp TGCTCCTTGTCACCCAAAGAATCGACAGGGACTTTAGAAATCAAAAGATATAGCTGGAGATGGCCGAAGTaGCCGCCTTGCTCGACAGAC +
Preference number: 4 (lower is better)
Translates to: CSLSPKESTGTLEIKRYSWRWPK*PPCSTD
Trigger: GTCTGTCGAGCAAGGCGGCCACTTCGGCCATCTCCA...GCTATATCTTTTGATTTCTAAAGTCCCTGTCGATTCTTTGGGTGACAAGGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp AGAATATTTTATATTTTAATGAAGGCTAGTCCCAAGGCAACGAACTTCCTGATGGGGGGTCAGTCCGGTTaGCTGGGCGAGCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: RIFYILMKASPKATNFLMGGQSG*LGELSL
Trigger: AAGCGAGAGCTCGCCCAGGCAACCGGACTGACCCCC...CATCAGGAAGTTCGTTGCCTTGGGACTAGCCTTCATTAAAATATAAAATATTCT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTGTTTTTGGCTGCAGCTaGCCGGTCTCTTTGTCTGCG +
Preference number: 4 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPVFGCS*PVSLSA
Trigger: CGCAGACAAAGAGACCGGGCAGCTGCAGCCAAAAAC...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGACCCTGCGACAGAACCTaGTGCTGGAGTCTGTTTTTG +
Preference number: 4 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRPCDRT*CWSLFL
Trigger: CAAAAACAGACTCCAGCAGCAGGTTCTGTCGCAGGG...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp GATTTAGAAAATGCCTGTCATTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGCACTCTCGAAGCAGGTaGCGCGTGCGCTCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: DLENACHFSVACFLVNIKHSRSR*RVRSLK
Trigger: CTTCAAGGAGCGCACGCGGCACCTGCTTCGAGAGTG...CTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCATTTTCTAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGATGCGACAGAACCTGCTaGTGGAGTCTGTTTTTGGCT +
Preference number: 4 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRCDRTC*WSLFLA
Trigger: AGCCAAAAACAGACTCCAGCAGCAGGTTCTGTCGCA...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CCA 90 bp AGAATATTTTATATTTTAATGAAGGCTAGTCCCAAGGCAACGAACTTCCTGATGAGTTGCCCACCTGTGTaGGGGTCAGTCCGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: RIFYILMKASPKATNFLMSCPPV*GSVRLP
Trigger: AGGCAACCGGACTGACCCCCACACAGGTGGGCAACT...CATCAGGAAGTTCGTTGCCTTGGGACTAGCCTTCATTAAAATATAAAATATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR TCA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTTTTGTCTGCGGTTTTTaGACCAGTTGCCCACCTGTG +
Preference number: 4 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPFVCGF*TSCPPV
Trigger: CACAGGTGGGCAACTGGTTCAAAAACCGCAGACAAA...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTCATACCCCGGCTACTTaGTGGGGGCTGAAATTCAAA +
Preference number: 4 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPHTPAT*WGLKFK
Trigger: TTTGAATTTCAGCCCCCAGCAAGTAGCCGGGGTATG...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CAA 72 bp TTTATTATTTGGCTTCTTCACACAGAACGCGTGAGCTaGCTCATTCAAAACAGCAAGTTCCCCAAGCTACAG +
Preference number: 4 (lower is better)
Translates to: FIIWLLHTERVS*LIQNSKFPKLQ
Trigger: CTGTAGCTTGGGGAACTTGCTGTTTTGAATGAGCAAGCTCACGCGTTCTGTGTGAAGAAGCCAAATAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR GCA 90 bp GATTTAGAAAATGCCTGTCATTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGCGAGCTCTCGCTTTTTaGTGGGGTTGGGATATGGGT +
Preference number: 4 (lower is better)
Translates to: DLENACHFSVACFLVNIKRALAF*WGWDMG
Trigger: ACCCATATCCCAACCCCAGCAAAAAGCGAGAGCTCG...CTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCATTTTCTAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CCA 90 bp GATTTAGAAAATGCCTGTCATTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGGCTCTCGCTTTTTGCTaGGGTTGGGATATGGGTCCT +
Preference number: 4 (lower is better)
Translates to: DLENACHFSVACFLVNIKALAFC*GWDMGP
Trigger: AGGACCCATATCCCAACCCCAGCAAAAAGCGAGAGC...CTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCATTTTCTAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
3UTR CAA 72 bp GCTGAAATGAGTTTCGGATGGAGCTGGATTATAAGATaGAGAGCCATGAATTTTCCACTGAAGTGCAATCCT +
Preference number: 4 (lower is better)
Translates to: AEMSFGWSWIIR*RAMNFPLKCNP
Trigger: AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCATCCGAAACTCATTTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR TCA 90 bp AGAATATTTTATATTTTAATGAAGGCTAGTCCCAAGGCAACGAACTTCCTGATGCTACTTGCTGGGGGCTaGAATTCAAAATGGGCAGCT +
Preference number: 4 (lower is better)
Translates to: RIFYILMKASPKATNFLMLLAGG*NSKWAA
Trigger: AGCTGCCCATTTTGAATTTCAGCCCCCAGCAAGTAG...CATCAGGAAGTTCGTTGCCTTGGGACTAGCCTTCATTAAAATATAAAATATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS GCA 90 bp TCAGGCGTTCCCTCACCCTCCGAGCGTAGCACCCGCCCGGGGCCCTaGGACAGAACCTGCTGCTGGAGTCTGTTTTTGGCTGCAGCTGCC +
Preference number: 5 (lower is better)
Translates to: SGVPSPSERSTRPGP*DRTCCWSLFLAAAA
Trigger: GGCAGCTGCAGCCAAAAACAGACTCCAGCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGTGCTACGCTCGGAGGGTGAGGGAACGCCTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS GCA 90 bp CCCTCCGAGCGTAGCACCCGCCCGGGGCCCTGCGACAGAACCTGCTaGTGGAGTCTGTTTTTGGCTGCAGCTGCCCGGTCTCTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: PSERSTRPGPCDRTC*WSLFLAAAARSLCL
Trigger: CAGACAAAGAGACCGGGCAGCTGCAGCCAAAAACAGACTCCAGCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGTGCTACGCTCGGAGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS CCA 90 bp TCCGAGCGTAGCACCCGCCCGGGGCCCTGCGACAGAACCTGCTGCTaGAGTCTGTTTTTGGCTGCAGCTGCCCGGTCTCTTTGTCTGCGG +
Preference number: 5 (lower is better)
Translates to: SERSTRPGPCDRTCC*SLFLAAAARSLCLR
Trigger: CCGCAGACAAAGAGACCGGGCAGCTGCAGCCAAAAACAGACTCCAGCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGTGCTACGCTCGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTTGGGGGTCAGTCCGGTaGCCTGGGCGAGCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPWGSVR*PGRALA
Trigger: AGCGAGAGCTCGCCCAGGCAACCGGACTGACCCCCA...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp GTCTTTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATTGGGCGGTTTTTGAACCAGTaGCCCACCTGTGTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: VFAARSFRKSNAKRSSIGRFLNQ*PTCVGV
Trigger: GACCCCCACACAGGTGGGCAACTGGTTCAAAAACCG...CCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp TGGAGCTGGATTATAAGATTGAGAGCCATGAATTTTCCACTGAAGTGCAATCCTGCCGAAGTGGCCGCCTaGCTCGACAGACTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: WSWIIRLRAMNFPLKCNPAEVAA*LDRLAA
Trigger: GGCTGCCAGTCTGTCGAGCAAGGCGGCCACTTCGGC...AGGATTGCACTTCAGTGGAAAATTCATGGCTCTCAATCTTATAATCCAGCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp GTCTTTGCAGCCAGATCCTTCAGGAAAAGCAATGCGAAGAGAAGTAGCATTGGGCTTTGTCTGCGGTTTTaGAACCAGTTGCCCACCTGT +
Preference number: 5 (lower is better)
Translates to: VFAARSFRKSNAKRSSIGLCLRF*NQLPTC
Trigger: ACAGGTGGGCAACTGGTTCAAAAACCGCAGACAAAG...CCCAATGCTACTTCTCTTCGCATTGCTTTTCCTGAAGGATCTGGCTGCAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGATTCCTTACTCGGTACTaGTCTACTGGCCCTAGGGGC +
Preference number: 5 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRFLTRY*STGPRG
Trigger: GCCCCTAGGGCCAGTAGACAAGTACCGAGTAAGGAA...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp TGCTCCTTGTCACCCAAAGAATCGACAGGGACTTTAGAAATCAAAAGATATAGCACATACCCCGGCTACTaGCTGGGGGCTGAAATTCAA +
Preference number: 5 (lower is better)
Translates to: CSLSPKESTGTLEIKRYSTYPGY*LGAEIQ
Trigger: TTGAATTTCAGCCCCCAGCAAGTAGCCGGGGTATGT...GCTATATCTTTTGATTTCTAAAGTCCCTGTCGATTCTTTGGGTGACAAGGAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp TTCTACCTGTGCTACATGCTTACCTTGAATGACCATAAGTTTCTGAGTGGGAGAAGCACCGACTCATTCTaGTTAAGGGCTTCACAAGCT +
Preference number: 5 (lower is better)
Translates to: FYLCYMLTLNDHKFLSGRSTDSF*LRASQA
Trigger: AGCTTGTGAAGCCCTTAACAAGAATGAGTCGGTGCT...TCTCCCACTCAGAAACTTATGGTCATTCAAGGTAAGCATGTAGCACAGGTAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp GATTTAGAAAATGCCTGTCATTTCTCTGTAGCATGCTTTCTGGTCAATATAAAGCACAGCGCCTGCAGCTaGGCGTGCGATTCCTTAGTA +
Preference number: 5 (lower is better)
Translates to: DLENACHFSVACFLVNIKHSACS*ACDSLV
Trigger: TACTAAGGAATCGCACGCCAAGCTGCAGGCGCTGTG...CTTTATATTGACCAGAAAGCATGCTACAGAGAAATGACAGGCATTTTCTAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS-3UTR CAA 90 bp AGAATATTTTATATTTTAATGAAGGCTAGTCCCAAGGCAACGAACTTCCTGATGTGCTGGAGTCTGTTTTaGGCTGCAGCTGCCCGGTCT +
Preference number: 5 (lower is better)
Translates to: RIFYILMKASPKATNFLMCWSLF*AAAARS
Trigger: AGACCGGGCAGCTGCAGCCAAAAACAGACTCCAGCA...CATCAGGAAGTTCGTTGCCTTGGGACTAGCCTTCATTAAAATATAAAATATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS CCA 72 bp TGGAGATGGCCGAAGTGGCCGCCTTGCTCGACAGACTaGCAGCCGGGCTGGAGGCGACGCCCAACACCTCAG +
Preference number: 6 (lower is better)
Translates to: WRWPKWPPCSTD*QPGWRRRPTPQ
Trigger: CTGAGGTGTTGGGCGTCGCCTCCAGCCCGGCTGCCAGTCTGTCGAGCAAGGCGGCCACTTCGGCCATCTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS GCA 72 bp CGTAGCACCCGCCCGGGGCCCTGCGACAGAACCTGCTaGTGGAGTCTGTTTTTGGCTGCAGCTGCCCGGTCT +
Preference number: 6 (lower is better)
Translates to: RSTRPGPCDRTC*WSLFLAAAARS
Trigger: AGACCGGGCAGCTGCAGCCAAAAACAGACTCCAGCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGTGCTACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS GCA 72 bp CCCTCACCCTCCGAGCGTAGCACCCGCCCGGGGCCCTaGGACAGAACCTGCTGCTGGAGTCTGTTTTTGGCT +
Preference number: 6 (lower is better)
Translates to: PSPSERSTRPGP*DRTCCWSLFLA
Trigger: AGCCAAAAACAGACTCCAGCAGCAGGTTCTGTCGCAGGGCCCCGGGCGGGTGCTACGCTCGGAGGGTGAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS CAA 72 bp TCGCTGGATGTGATGGAGATGGCCGAAGTGGCCGCCTaGCTCGACAGACTGGCAGCCGGGCTGGAGGCGACG +
Preference number: 6 (lower is better)
Translates to: SLDVMEMAEVAA*LDRLAAGLEAT
Trigger: CGTCGCCTCCAGCCCGGCTGCCAGTCTGTCGAGCAAGGCGGCCACTTCGGCCATCTCCATCACATCCAGCGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS GCA 72 bp GGGTCAGTCCGGTTGCCTGGGCGAGCTCTCGCTTTTTaGTGGGGTTGGGATATGGGTCCTGAAGGTACCACT +
Preference number: 6 (lower is better)
Translates to: GSVRLPGRALAF*WGWDMGPEGTT
Trigger: AGTGGTACCTTCAGGACCCATATCCCAACCCCAGCAAAAAGCGAGAGCTCGCCCAGGCAACCGGACTGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS TCA 72 bp GGTACCACTCTCGAAGCAGGTGCCGCGTGCGCTCCTTaGAGCAGTGAGTCTTCTGTTCGCCATCCCAAATGG +
Preference number: 6 (lower is better)
Translates to: GTTLEAGAACAP*SSESSVRHPKW
Trigger: CCATTTGGGATGGCGAACAGAAGACTCACTGCTTCAAGGAGCGCACGCGGCACCTGCTTCGAGAGTGGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7
CDS GCA 72 bp TATGATTTTCCAGGATATGATAAAGCTCGCGGTAGTTaGCACCGTGGAAAGCCACGATGGCTCTCGCTCGCA +
Preference number: 6 (lower is better)
Translates to: YDFPGYDKARGS*HRGKPRWLSLA
Trigger: TGCGAGCGAGAGCCATCGTGGCTTTCCACGGTGGCAACTACCGCGAGCTTTATCATATCCTGGAAAATCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021519.7