Pregenerated sensors for SIX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051367Ensembl transcript IDs: ENSMUST00000050029.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGCAGAATTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTaGTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCAAT | + |
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Preference number: 1 (lower is better) Translates to: AAELSLASMYKCPLD*CGWLLLRPSLQGPN Trigger: ATTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAATTCTGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 90 bp | GCAGAATTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTGCTaGGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCAATATC | + |
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Preference number: 1 (lower is better) Translates to: AELSLASMYKCPLDC*GWLLLRPSLQGPNI Trigger: GATATTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAATTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 90 bp | GAAAGCCTGTGGTTCCTTTCTGCGCAAAGAACCCCAGAAACAAGCTaGAGAATTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTG | + |
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Preference number: 1 (lower is better) Translates to: ESLWFLSAQRTPETS*RIVPGFYVQVSPRL Trigger: CAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAATTCTGCAGCTTGTTTCTGGGGTTCTTTGCGCAGAAAGGAACCACAGGCTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 90 bp | ATTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTGCTGCGGTaGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCAATATCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: IVPGFYVQVSPRLLR*VAAPAIPSRPQYLP Trigger: GGGGAGATATTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 90 bp | AGCTGCAGAATTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATaGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCAA | + |
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Preference number: 2 (lower is better) Translates to: SCRIVPGFYVQVSPR*LRLVAAPAIPSRPQ Trigger: TTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAATTCTGCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 90 bp | TGTGGTTCCTTTCTGCGCAAAGAACCCCAGAAACAAGCTGCAGAATaGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTGCTGCGGT | + |
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Preference number: 2 (lower is better) Translates to: CGSFLRKEPQKQAAE*SLASMYKCPLDCCG Trigger: ACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAATTCTGCAGCTTGTTTCTGGGGTTCTTTGCGCAGAAAGGAACCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR-3UTR GCA 90 bp | TCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAATGTCCCCTAGATTGCTaGGGTTGGTTGCTGCTCCGG | + |
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Preference number: 2 (lower is better) Translates to: SGDRLQKYPLQLTTTTKKCPLDC*GWLLLR Trigger: CCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA...TTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGTAAAGGATGCCTGGGTTGCCCAGAACCAAGCCTGGCTGTTTTTGTTATTTTTAAAAAGACAATTGTaGAAGCCTGTGGTTCCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: TVKDAWVAQNQAWLFLLFLKRQL*KPVVPF Trigger: GAAAGGAACCACAGGCTTTCACAATTGTCTTTTTAA...AAATAACAAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR-3UTR GCA 90 bp | TTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAAGCAAGAAAACTTGACCCCAGAAACAAGCTaGAGAATTGTCCCTGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: FKNTLCNSQLLLRKQENLTPETS*RIVPGF Trigger: GAAGCCAGGGACAATTCTGCAGCTTGTTTCTGGGGT...CAAGTTTTCTTGCTTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CCA 72 bp | GCTTCTATGTACAAGTGTCCCCTAGATTGCTGCGGTTaGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCAAT | + |
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Preference number: 3 (lower is better) Translates to: ASMYKCPLDCCG*LLLRPSLQGPN Trigger: ATTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 72 bp | TTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTaGTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: LSLASMYKCPLD*CGWLLLRPSLQ Trigger: TTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 72 bp | GGAAGAAGAGGTGGAATAAGGGACTACTGTAAAGGATaGCTGGGTTGCCCAGAACCAAGCCTGGCTGTTTTT | + |
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Preference number: 3 (lower is better) Translates to: GRRGGIRDYCKG*LGCPEPSLAVF Trigger: AAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGTAGTCCCTTATTCCACCTCTTCTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 72 bp | TGGTTCCTTTCTGCGCAAAGAACCCCAGAAACAAGCTaGAGAATTGTCCCTGGCTTCTATGTACAAGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: WFLSAQRTPETS*RIVPGFYVQVS Trigger: GGACACTTGTACATAGAAGCCAGGGACAATTCTGCAGCTTGTTTCTGGGGTTCTTTGCGCAGAAAGGAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 72 bp | GGTGGAATAAGGGACTACTGTAAAGGATGCCTGGGTTaGCCAGAACCAAGCCTGGCTGTTTTTGTTATTTCC | + |
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Preference number: 3 (lower is better) Translates to: GGIRDYCKGCLG*PEPSLAVFVIS Trigger: GGAAATAACAAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGTAGTCCCTTATTCCACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CCA 72 bp | ACTGTAAAGGATGCCTGGGTTGCCCAGAACCAAGCCTaGCTGTTTTTGTTATTTCCTGACCTTTTAGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: TVKDAWVAQNQA*LFLLFPDLLVG Trigger: TCCCACTAAAAGGTCAGGAAATAACAAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR-3UTR CAA 90 bp | TCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAACAAGCCTGGCTGTTTTaGTTATTTCCTGACCTTTTA | + |
|
Preference number: 3 (lower is better) Translates to: SGDRLQKYPLQLTTTTKKQAWLF*LFPDLL Trigger: TAAAAGGTCAGGAAATAACAAAAACAGCCAGGCTTG...TTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR GCA 72 bp | TCTCTGTTTCGGGTGACAGACTTCAAAAATACCCTCTaGAACTCACAACTACTACTAAGAAAGCAAGAAAAC | + |
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Preference number: 3 (lower is better) Translates to: SLFRVTDFKNTL*NSQLLLRKQEN Trigger: GTTTTCTTGCTTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGAAACAGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR-3UTR CAA 90 bp | TCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAACAACTGAGACCGCTGTaGGTTGTAATTTTTAAAAAG | + |
|
Preference number: 3 (lower is better) Translates to: SGDRLQKYPLQLTTTTKKQLRPL*VVIFKK Trigger: CTTTTTAAAAATTACAACCAACAGCGGTCTCAGTTG...TTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR TCA 90 bp | TGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCCCGTTTCTCCCTCGGTaGGGGGTAGGGGTTGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: CPLDCCGWLLLRPSLQGPPFLPR*GVGVVR Trigger: GCGCACAACCCCTACCCCTCACCGAGGGAGAAACGG...GGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA 64% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR GCA 90 bp | TGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCGGCGCACCCGATATTTaGCCACGGCACCCAGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: CPLDCCGWLLLRPSLQGPGAPDI*PRHPGV Trigger: GACCCCTGGGTGCCGTGGGCAAATATCGGGTGCGCC...GGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR TCA 90 bp | TGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCCCACCAAACTGGAGGTaGGTGGGCCCAGCAGAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: CPLDCCGWLLLRPSLQGPPPNWR*VGPAES Trigger: ACTCTCTGCTGGGCCCACTCACCTCCAGTTTGGTGG...GGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA 62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CCA 90 bp | TGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCTTTGAGCTCCTGGCGTaGCCCATATTGCTCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: CPLDCCGWLLLRPSLQGPFELLA*PILLWS Trigger: GCTCCAGAGCAATATGGGCCACGCCAGGAGCTCAAA...GGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR GCA 90 bp | TGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCCACGCCACTTGCTCTTaGGTAAAACCAAACGACGGC | + |
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Preference number: 4 (lower is better) Translates to: CPLDCCGWLLLRPSLQGPHATCS*VKPNDG Trigger: GCCGTCGTTTGGTTTTACGCAAGAGCAAGTGGCGTG...GGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR GCA 90 bp | GTACAAGTGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGTTCCCTCCTTGCTaGAGAACTTCGCACACGCAC | + |
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Preference number: 4 (lower is better) Translates to: VQVSPRLLRLVAAPAIPSRFPPC*RTSHTH Trigger: GTGCGTGTGCGAAGTTCTGCAGCAAGGAGGGAACCT...TGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 72 bp | GGCTTCTATGTACAAGTGTCCCCTAGATTGCTGCGGTaGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: GFYVQVSPRLLR*VAAPAIPSRPQ Trigger: TTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 72 bp | TCTATGTACAAGTGTCCCCTAGATTGCTGCGGTTGGTaGCTGCTCCGGCCATCCCTTCAAGGCCCCAATATC | + |
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Preference number: 4 (lower is better) Translates to: SMYKCPLDCCGW*LLRPSLQGPNI Trigger: GATATTGGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 72 bp | ATTGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGATaGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: IVPGFYVQVSPR*LRLVAAPAIPS Trigger: TGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGACAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR TCA 90 bp | AAGCCTGTGGTTCCTTTCTGCGCAAAGAACCCCAGAAACAAGCTGCAGAATTGTCTTCTGAGCTGGACATaGGCGGCTTGCCCCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KPVVPFCAKNPRNKLQNCLLSWT*AACPLP Trigger: TGGAAGGGGGCAAGCCGCTCATGTCCAGCTCAGAAG...ACAATTCTGCAGCTTGTTTCTGGGGTTCTTTGCGCAGAAAGGAACCACAGGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CCA 90 bp | TGTCTTAAGAAGGCAGCCAGTTCCCCTCACACTGAAGGTTTCTTGTTTTCATTATGGGCTTGCAGACCGTaGCTGGGCTGGGAGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: CLKKAASSPHTEGFLFSLWACRP*LGWEAV Trigger: CACAGCCTCCCAGCCCAGCCACGGTCTGCAAGCCCA...TAATGAAAACAAGAAACCTTCAGTGTGAGGGGAACTGGCTGCCTTCTTAAGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR TCA 90 bp | GTGAAAGCCTGTGGTTCCTTTCTGCGCAAAGAACCCCAGAAACAAGCTGCAGAATGGAAGAGAATAGTTTaGGCTCCTGGCGTGGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: VKACGSFLRKEPQKQAAEWKRIV*APGVAH Trigger: ATGGGCCACGCCAGGAGCTCAAACTATTCTCTTCCA...TTCTGCAGCTTGTTTCTGGGGTTCTTTGCGCAGAAAGGAACCACAGGCTTTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR TCA 90 bp | CTCTCTGTTTCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTTGGGCTGGGAGGCTGTaGGGCCTGGAAGAGAATAGT | + |
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Preference number: 4 (lower is better) Translates to: LSVSGDRLQKYPLQLTTTWAGRL*GLEENS Trigger: ACTATTCTCTTCCAGGCCTCACAGCCTCCCAGCCCA...AGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGAAACAGAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CCA 90 bp | TCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAATGTTCTCCCTTTCCTTaGCCTCGGCGGCCCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SGDRLQKYPLQLTTTTKKCSPFP*PRRPGL Trigger: GAGACCGGGCCGCCGAGGCCAAGGAAAGGGAGAACA...TTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR GCA 90 bp | CTCTCTGTTTCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTTCCAGGTTCCCTCCTTaGTGCAGAACTTCGCACACG | + |
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Preference number: 4 (lower is better) Translates to: LSVSGDRLQKYPLQLTTTSRFPP*CRTSHT Trigger: CGTGTGCGAAGTTCTGCAGCAAGGAGGGAACCTGGA...AGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGAAACAGAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR GCA 90 bp | TGTCTTAAGAAGGCAGCCAGTTCCCCTCACACTGAAGGTTTCTTGTTTTCATTAACGACCACAAGAACCTaGCCAGGCGTTCCAGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: CLKKAASSPHTEGFLFSLTTTRT*PGVPGS Trigger: GGAACCTGGAACGCCTGGGCAGGTTCTTGTGGTCGT...TAATGAAAACAAGAAACCTTCAGTGTGAGGGGAACTGGCTGCCTTCTTAAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CCA 90 bp | ACTGTAAAGGATGCCTGGGTTGCCCAGAACCAAGCCTGGCTGTTTTTGTTATTTTGGCCCATATTGCTCTaGAGCAGAAGGACCGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: TVKDAWVAQNQAWLFLLFWPILL*SRRTEF Trigger: GAACTCGGTCCTTCTGCTCCAGAGCAATATGGGCCA...AAATAACAAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR GCA 90 bp | TCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAATGGCGTGGCCCATATTaGTCTGGAGCAGAAGGACCG | + |
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Preference number: 4 (lower is better) Translates to: SGDRLQKYPLQLTTTTKKWRGPY*SGAEGP Trigger: CGGTCCTTCTGCTCCAGAGCAATATGGGCCACGCCA...TTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| 3UTR CAA 72 bp | TTTCTGCGCAAAGAACCCCAGAAACAAGCTGCAGAATaGTCCCTGGCTTCTATGTACAAGTGTCCCCTAGAT | + |
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Preference number: 4 (lower is better) Translates to: FLRKEPQKQAAE*SLASMYKCPLD Trigger: ATCTAGGGGACACTTGTACATAGAAGCCAGGGACAATTCTGCAGCTTGTTTCTGGGGTTCTTTGCGCAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CCA 90 bp | CTCTCTGTTTCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTAATAGTTTGAGCTCCTaGCGTGGCCCATATTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LSVSGDRLQKYPLQLTTTNSLSS*RGPYCS Trigger: AGAGCAATATGGGCCACGCCAGGAGCTCAAACTATT...AGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGAAACAGAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CCA 90 bp | CTCTCTGTTTCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTGTTGATTCTGCTTGTTaGAGGAGGAGTTATTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LSVSGDRLQKYPLQLTTTVDSAC*RRSYCF Trigger: AAAACAATAACTCCTCCTCCAACAAGCAGAATCAAC...AGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGAAACAGAGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | GTACAAGTGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAGTGTTCTCCCTTTCCTaGGCCTCGGCGGCCCGGTCT | + |
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Preference number: 5 (lower is better) Translates to: VQVSPRLLRLVAAPAIPSVFSLS*ASAARS Trigger: AGACCGGGCCGCCGAGGCCAAGGAAAGGGAGAACAC...TGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | TGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCCGGCCATCCCTTCAAGGCCCCCTGGAAGAGAATAGTTaGAGCTCCTGGCGTGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: CPLDCCGWLLLRPSLQGPLEENS*SSWRGP Trigger: TGGGCCACGCCAGGAGCTCAAACTATTCTCTTCCAG...GGGGCCTTGAAGGGATGGCCGGAGCAGCAACCAACCGCAGCAATCTAGGGGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | TCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCGCACGCCACTTGCTCTaGCGTAAAACCAAACGACGG | + |
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Preference number: 5 (lower is better) Translates to: SLASMYKCPLDCCGWLLLARHLL*RKTKRR Trigger: CCGTCGTTTGGTTTTACGCAAGAGCAAGTGGCGTGC...GAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | TCCCTGGCTTCTATGTACAAGTGTCCCCTAGATTGCTGCGGTTGGTTGCTGCTCTTCCAGGTTCCCTCCTaGCTGCAGAACTTCGCACAC | + |
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Preference number: 5 (lower is better) Translates to: SLASMYKCPLDCCGWLLLFQVPS*LQNFAH Trigger: GTGTGCGAAGTTCTGCAGCAAGGAGGGAACCTGGAA...GAGCAGCAACCAACCGCAGCAATCTAGGGGACACTTGTACATAGAAGCCAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | TGTCTTAAGAAGGCAGCCAGTTCCCCTCACACTGAAGGTTTCTTGTTTTCATTACGGCGCACCCGATATTaGCCCACGGCACCCAGGGGT | + |
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Preference number: 5 (lower is better) Translates to: CLKKAASSPHTEGFLFSLRRTRY*PTAPRG Trigger: ACCCCTGGGTGCCGTGGGCAAATATCGGGTGCGCCG...TAATGAAAACAAGAAACCTTCAGTGTGAGGGGAACTGGCTGCCTTCTTAAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS TCA 90 bp | TCTGAGCTGGACATGAGCGGCTTGCCCCCTTCCAGAGGAGAGAGTTaGTTCTGCTTGTTGGAGGAGGAGTTATTGTTTTCGGTGTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SELDMSGLPPSRGES*FCLLEEELLFSVFS Trigger: GGAGAACACCGAAAACAATAACTCCTCCTCCAACAAGCAGAATCAACTCTCTCCTCTGGAAGGGGGCAAGCCGCTCATGTCCAGCTCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | ACTGTAAAGGATGCCTGGGTTGCCCAGAACCAAGCCTGGCTGTTTTTGTTATTTACCACCGCCTTGGCCTaGAGCACGCTCTCGTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TVKDAWVAQNQAWLFLLFTTALA*STLSFL Trigger: CAAGAACGAGAGCGTGCTCAAGGCCAAGGCGGTGGT...AAATAACAAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | TCGGGTGACAGACTTCAAAAATACCCTCTGCAACTCACAACTACTACTAAGAAACTGGACATGAGCGGCTaGCCCCCTTCCAGAGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: SGDRLQKYPLQLTTTTKKLDMSG*PPSRGE Trigger: CTCTCCTCTGGAAGGGGGCAAGCCGCTCATGTCCAG...TTTCTTAGTAGTAGTTGTGAGTTGCAGAGGGTATTTTTGAAGTCTGTCACCCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | TGTCTTAAGAAGGCAGCCAGTTCCCCTCACACTGAAGGTTTCTTGTTTTCATTACTGGCGTGGCCCATATaGCTCTGGAGCAGAAGGACC | + |
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Preference number: 5 (lower is better) Translates to: CLKKAASSPHTEGFLFSLLAWPI*LWSRRT Trigger: GGTCCTTCTGCTCCAGAGCAATATGGGCCACGCCAG...TAATGAAAACAAGAAACCTTCAGTGTGAGGGGAACTGGCTGCCTTCTTAAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS-3UTR CAA 90 bp | ACTGTAAAGGATGCCTGGGTTGCCCAGAACCAAGCCTGGCTGTTTTTGTTATTTTTGGAGGAGGAGTTATaGTTTTCGGTGTTCTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: TVKDAWVAQNQAWLFLLFLEEEL*FSVFSL Trigger: AAGGGAGAACACCGAAAACAATAACTCCTCCTCCAA...AAATAACAAAAACAGCCAGGCTTGGTTCTGGGCAACCCAGGCATCCTTTACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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| CDS CCA 72 bp | TGCCCCCTTCCAGAGGAGAGAGTTGATTCTGCTTGTTaGAGGAGGAGTTATTGTTTTCGGTGTTCTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: CPLPEERVDSAC*RRSYCFRCSPF Trigger: AAAGGGAGAACACCGAAAACAATAACTCCTCCTCCAACAAGCAGAATCAACTCTCTCCTCTGGAAGGGGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050029.8 |
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