Pregenerated sensors for SIVA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064326Ensembl transcript IDs: ENSMUST00000021728.12, ENSMUST00000109755.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGGCGAACACACCGTGGCTCAGCTCTTTCAGGCCCACGTGGACTTTaGGTTGGAGCGGGGCTGCGTCTGCGAACGGGCAGCTCCGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: RRTHRGSALSGPRGL*VGAGLRLRTGSSAW Trigger: CCAAGCGGAGCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAGAGCTGAGCCACGGTGTGTTCGCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS GCA 90 bp | AGCACACAGGCCAAAGCACCGCAGCCCCAGCAGGTGTATACACACTaGCCACACAGGGCCCGCTCGCACTGGCTGCAGACCGCCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: STQAKAPQPQQVYTH*PHRARSHWLQTAFP Trigger: TGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGGCCCTGTGTGGGCAGTGTGTATACACCTGCTGGGGCTGCGGTGCTTTGGCCTGTGTGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS TCA 90 bp | GCACTGGCTGCAGACCGCCTTCCCATCCACAGATCTCATGCACGATaGACAAGCGATGGGCGCTGTCCTGGGAAGGCCGAAGACCTCGCG | + |
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Preference number: 5 (lower is better) Translates to: ALAADRLPIHRSHAR*TSDGRCPGKAEDLA Trigger: CGCGAGGTCTTCGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS GCA 90 bp | CCCGCTCGCACTGGCTGCAGACCGCCTTCCCATCCACAGATCTCATaGACGATGAACAAGCGATGGGCGCTGTCCTGGGAAGGCCACCTT | + |
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Preference number: 5 (lower is better) Translates to: PARTGCRPPSHPQIS*TMNKRWALSWEGHL Trigger: AAGGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS GCA 90 bp | CCCGCTCGCACTGGCTGCAGACCGCCTTCCCATCCACAGATCTCATaGACGATGAACAAGCGATGGGCGCTGTCCTGGGAAGGCCGAAGA | + |
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Preference number: 5 (lower is better) Translates to: PARTGCRPPSHPQIS*TMNKRWALSWEGRR Trigger: TCTTCGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS CCA 90 bp | CCCCAGCAGGTGTATACACACTGCCCACACAGGGCCCGCTCGCACTaGCTGCAGACCGCCTTCCCATCCACAGATCTCATGCACGATGAA | + |
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Preference number: 5 (lower is better) Translates to: PQQVYTHCPHRARSH*LQTAFPSTDLMHDE Trigger: TTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGGCCCTGTGTGGGCAGTGTGTATACACCTGCTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS TCA 90 bp | GAACAAGCGATGGGCGCTGTCCTGGGAAGGCCACCTTCTGAGGCCTaGGCTTGGCACCGTGTCAGTCGGCCATCAGGTCCAATCAACATC | + |
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Preference number: 5 (lower is better) Translates to: EQAMGAVLGRPPSEA*AWHRVSRPSGPINI Trigger: GATGTTGATTGGACCTGATGGCCGACTGACACGGTGCCAAGCTCAGGCCTCAGAAGGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS GCA 90 bp | AGCACAGCTGGTGCACAGTGTCTTCTCACCATCGTCGGCATAGTCTaGAAGGCCACACAGCACACAGGCCAAAGCACCGCAGCCCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: STAGAQCLLTIVGIV*KATQHTGQSTAAPA Trigger: TGCTGGGGCTGCGGTGCTTTGGCCTGTGTGCTGTGTGGCCTTGCAGACTATGCCGACGATGGTGAGAAGACACTGTGCACCAGCTGTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CCA 90 bp | CATCCACAGATCTCATGCACGATGAACAAGCGATGGGCGCTGTCCTaGGAAGGCCGAAGACCTCGCGTGAGTAGCGCTCGGCGAACACAC | + |
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Preference number: 5 (lower is better) Translates to: HPQISCTMNKRWALS*EGRRPRVSSARRTH Trigger: GTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTTCGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS CCA 90 bp | AGACCGCCTTCCCATCCACAGATCTCATGCACGATGAACAAGCGATaGGCGCTGTCCTGGGAAGGCCGAAGACCTCGCGTGAGTAGCGCT | + |
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Preference number: 5 (lower is better) Translates to: RPPSHPQISCTMNKR*ALSWEGRRPRVSSA Trigger: AGCGCTACTCACGCGAGGTCTTCGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS GCA 90 bp | AGCAGGTGTATACACACTGCCCACACAGGGCCCGCTCGCACTGGCTaGAGACCGCCTTCCCATCCACAGATCTCATGCACGATGAACAAG | + |
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Preference number: 5 (lower is better) Translates to: SRCIHTAHTGPARTG*RPPSHPQISCTMNK Trigger: CTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGGCCCTGTGTGGGCAGTGTGTATACACCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CCA 90 bp | CATCCACAGATCTCATGCACGATGAACAAGCGATGGGCGCTGTCCTaGGAAGGCCACCTTCTGAGGCCTGAGCTTGGCACCGTGTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: HPQISCTMNKRWALS*EGHLLRPELGTVSV Trigger: GACTGACACGGTGCCAAGCTCAGGCCTCAGAAGGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS CCA 90 bp | ATATGTGATCTCTATAGGCCCGAGCCCCTTGGAAAAGGAGCTGCTTaGTTCTTTCGAAGACCTCGCGTGAGTAGCGCTCGGCGAACACAC | + |
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Preference number: 5 (lower is better) Translates to: ICDLYRPEPLGKGAA*FFRRPRVSSARRTH Trigger: GTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTTCGAAAGAACCAAGCAGCTCCTTTTCCAAGGGGCTCGGGCCTATAGAGATCACATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS TCA 72 bp | GATGGGCGCTGTCCTGGGAAGGCCGAAGACCTCGCGTaGGTAGCGCTCGGCGAACACACCGTGGCTCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: DGRCPGKAEDLA*VALGEHTVAQL Trigger: GAGCTGAGCCACGGTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTTCGGCCTTCCCAGGACAGCGCCCATC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS TCA 72 bp | CACCGTGGCTCAGCTCTTTCAGGCCCACGTGGACTTTaGGTTGGAGCGGGGCTGCGTCTGCGAACGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: HRGSALSGPRGL*VGAGLRLRTGS Trigger: GCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAGAGCTGAGCCACGGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CCA 72 bp | TGGCTCAGCTCTTTCAGGCCCACGTGGACTTTGAGTTaGAGCGGGGCTGCGTCTGCGAACGGGCAGCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: WLSSFRPTWTLS*SGAASANGQLR Trigger: GCGGAGCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAGAGCTGAGCCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CAA 72 bp | GTGGCTCAGCTCTTTCAGGCCCACGTGGACTTTGAGTaGGAGCGGGGCTGCGTCTGCGAACGGGCAGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: VAQLFQAHVDFE*ERGCVCERAAP Trigger: CGGAGCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAGAGCTGAGCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CAA 90 bp | TCGGCGAACACACCGTGGCTCAGCTCTTTCAGGCCCACGTGGACTTaGAGTTGGAGCGGGGCTGCGTCTGCGAACGGGCAGCTCCGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SANTPWLSSFRPTWT*SWSGAASANGQLRL Trigger: CAAGCGGAGCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAGAGCTGAGCCACGGTGTGTTCGCCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CAA 90 bp | GAACACACCGTGGCTCAGCTCTTTCAGGCCCACGTGGACTTTGAGTaGGAGCGGGGCTGCGTCTGCGAACGGGCAGCTCCGCTTGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: EHTVAQLFQAHVDFE*ERGCVCERAAPLGH Trigger: ATGCCCAAGCGGAGCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAGAGCTGAGCCACGGTGTGTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS GCA 72 bp | ATACACACTGCCCACACAGGGCCCGCTCGCACTGGCTaGAGACCGCCTTCCCATCCACAGATCTCATGCACG | + |
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Preference number: 6 (lower is better) Translates to: IHTAHTGPARTG*RPPSHPQISCT Trigger: CGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGGCCCTGTGTGGGCAGTGTGTAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS TCA 72 bp | GCAGACCGCCTTCCCATCCACAGATCTCATGCACGATaGACAAGCGATGGGCGCTGTCCTGGGAAGGCCACC | + |
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Preference number: 6 (lower is better) Translates to: ADRLPIHRSHAR*TSDGRCPGKAT Trigger: GGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS CCA 72 bp | GTGTATACACACTGCCCACACAGGGCCCGCTCGCACTaGCTGCAGACCGCCTTCCCATCCACAGATCTCATG | + |
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Preference number: 6 (lower is better) Translates to: VYTHCPHRARSH*LQTAFPSTDLM Trigger: CATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGGCCCTGTGTGGGCAGTGTGTATACAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CCA 72 bp | ATCTCATGCACGATGAACAAGCGATGGGCGCTGTCCTaGGAAGGCCGAAGACCTCGCGTGAGTAGCGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: ISCTMNKRWALS*EGRRPRVSSAR Trigger: CCGAGCGCTACTCACGCGAGGTCTTCGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS TCA 72 bp | GCAGACCGCCTTCCCATCCACAGATCTCATGCACGATaGACAAGCGATGGGCGCTGTCCTGGGAAGGCCGAA | + |
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Preference number: 6 (lower is better) Translates to: ADRLPIHRSHAR*TSDGRCPGKAE Trigger: TTCGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109755.5 |
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| CDS CCA 72 bp | ATCTCATGCACGATGAACAAGCGATGGGCGCTGTCCTaGGAAGGCCACCTTCTGAGGCCTGAGCTTGGCACC | + |
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Preference number: 6 (lower is better) Translates to: ISCTMNKRWALS*EGHLLRPELGT Trigger: GGTGCCAAGCTCAGGCCTCAGAAGGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS TCA 72 bp | GAAAAGGAGCTGCTTGGTTCTTTCGAAGACCTCGCGTaGGTAGCGCTCGGCGAACACACCGTGGCTCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: EKELLGSFEDLA*VALGEHTVAQL Trigger: GAGCTGAGCCACGGTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTTCGAAAGAACCAAGCAGCTCCTTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS GCA 72 bp | ACTGGCTGCAGACCGCCTTCCCATCCACAGATCTCATaGACGATGAACAAGCGATGGGCGCTGTCCTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: TGCRPPSHPQIS*TMNKRWALSWE Trigger: TTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS GCA 72 bp | GGTGCACAGTGTCTTCTCACCATCGTCGGCATAGTCTaGAAGGCCACACAGCACACAGGCCAAAGCACCGCA | + |
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Preference number: 6 (lower is better) Translates to: GAQCLLTIVGIV*KATQHTGQSTA Trigger: TGCGGTGCTTTGGCCTGTGTGCTGTGTGGCCTTGCAGACTATGCCGACGATGGTGAGAAGACACTGTGCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021728.12 ENSMUST00000109755.5 |
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| CDS CCA 72 bp | TCCCATCCACAGATCTCATGCACGATGAACAAGCGATaGGCGCTGTCCTGGGAAGGCCACCTTCTGAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SHPQISCTMNKR*ALSWEGHLLRP Trigger: AGGCCTCAGAAGGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTGCATGAGATCTGTGGATGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS TCA 72 bp | CCATCAGGTCCAATCAACATCTGTCCCCTCGCAGGTTaGGGGGCTCCTACCACACCAGACTTCAGTGACTCC | + |
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Preference number: 6 (lower is better) Translates to: PSGPINICPLAG*GAPTTPDFSDS Trigger: GGAGTCACTGAAGTCTGGTGTGGTAGGAGCCCCTCAACCTGCGAGGGGACAGATGTTGATTGGACCTGATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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| CDS CAA 72 bp | TTCGCTCGATATGTGATCTCTATAGGCCCGAGCCCCTaGGAAAAGGAGCTGCTTGGTTCTTTCGAAGACCTC | + |
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Preference number: 6 (lower is better) Translates to: FARYVISIGPSP*EKELLGSFEDL Trigger: GAGGTCTTCGAAAGAACCAAGCAGCTCCTTTTCCAAGGGGCTCGGGCCTATAGAGATCACATATCGAGCGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021728.12 |
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