RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SIT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028460

Ensembl transcript IDs: ENSMUST00000030180.7

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTCAGGTCAGAAACCAAACTTGGGACCCTAGGAGCCTTCCAGCTGTaGGCTCTCCCATGCATGATATCCACCCACATCCTCTCTGGCTTC +
Preference number: 1 (lower is better)
Translates to: FRSETKLGTLGAFQL*ALPCMISTHILSGF
Trigger: GAAGCCAGAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCTAGGGTCCCAAGTTTGGTTTCTGACCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR TCA 90 bp TCTCTTTGCAACTCCTTCCTCAGGAAACCAGGAGGCTTCCGACTCTaGGATGTATGGACGCTGTCATGCAACTTAGGATGCTCCTGCCAC +
Preference number: 1 (lower is better)
Translates to: SLCNSFLRKPGGFRL*DVWTLSCNLGCSCH
Trigger: GTGGCAGGAGCATCCTAAGTTGCATGACAGCGTCCATACATCTCAGAGTCGGAAGCCTCCTGGTTTCCTGAGGAAGGAGTTGCAAAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR CCA 90 bp ACCTGGCTAAACCCTAAATGGAGGGAAAGGTGTGAGCAACGAGTTTaGGGGCTTACAGGAGAACGTAGAAAAGGTAAGTGTGGAGATCTC +
Preference number: 1 (lower is better)
Translates to: TWLNPKWRERCEQRV*GLTGERRKGKCGDL
Trigger: GAGATCTCCACACTTACCTTTTCTACGTTCTCCTGTAAGCCCCCAAACTCGTTGCTCACACCTTTCCCTCCATTTAGGGTTTAGCCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR CCA 90 bp GGGGACGCCAGAGGCAACAGCATGAAGGCCATTCTCTGTCCCCAGCTTTCAGGTCCAGTAGCTGAGCCATaGGTGCCCACAGTTCCAGGT +
Preference number: 2 (lower is better)
Translates to: GDARGNSMKAILCPQLSGPVAEP*VPTVPG
Trigger: ACCTGGAACTGTGGGCACCCATGGCTCAGCTACTGG...ACCTGAAAGCTGGGGACAGAGAATGGCCTTCATGCTGTTGCCTCTGGCGTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR TCA 90 bp GGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATCCTCTCTATGGAGGGAAAGGTGTaGGCAACGAGTTTGGGGGCT +
Preference number: 2 (lower is better)
Translates to: GAFQLWALPCMISTHILSMEGKV*ATSLGA
Trigger: AGCCCCCAAACTCGTTGCTCACACCTTTCCCTCCAT...AGAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR GCA 90 bp AGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATCCTCTCGTTAGAAACCAAACATaGCCTAGCCAGGACAGCAGG +
Preference number: 2 (lower is better)
Translates to: RSLPAVGSPMHDIHPHPLVRNQT*PSQDSR
Trigger: CCTGCTGTCCTGGCTAGGGCATGTTTGGTTTCTAAC...GAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR CCA 90 bp CCAGGGGACGCCAGAGGCAACAGCATGAAGGCCATTCTCTGTCCCCAGCTTTCATCAATGCCCTGGAGGTaGTTAGAAACCAAACATGCC +
Preference number: 2 (lower is better)
Translates to: PGDARGNSMKAILCPQLSSMPWR*LETKHA
Trigger: GGCATGTTTGGTTTCTAACCACCTCCAGGGCATTGA...TGAAAGCTGGGGACAGAGAATGGCCTTCATGCTGTTGCCTCTGGCGTCCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR CCA 90 bp ACTTGGGACCCTAGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACTGTGAGCAACGAGTTTaGGGGCTTACAGGAGAACGT +
Preference number: 2 (lower is better)
Translates to: TWDPRSLPAVGSPMHDIHCEQRV*GLTGER
Trigger: ACGTTCTCCTGTAAGCCCCCAAACTCGTTGCTCACA...GTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCTAGGGTCCCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR TCA 90 bp AGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATCCTCTCTGTCTGAGGAGACAATaGGGTATCTGCGTAAGCTTA +
Preference number: 2 (lower is better)
Translates to: RSLPAVGSPMHDIHPHPLCLRRQ*GICVSL
Trigger: TAAGCTTACGCAGATACCTCATTGTCTCCTCAGACA...GAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR-3UTR GCA 90 bp GGACATGGGGGAACCTGGCTAAACCCTAAATGGAGGGAAAGGTGTGAGCAACGAGTGGAGATCTCTCTTTaGAACTCCTTCCTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: GHGGTWLNPKWRERCEQRVEISL*NSFLRK
Trigger: TTTCCTGAGGAAGGAGTTGCAAAGAGAGATCTCCAC...TCGTTGCTCACACCTTTCCCTCCATTTAGGGTTTAGCCAGGTTCCCCCATGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR TCA 72 bp CTTCTCCCTGCCCACTTCCTGTGTCTGAGGAGACAATaGGGTATCTGCGTAAGCTTAGAGAGGACATGGGGG +
Preference number: 3 (lower is better)
Translates to: LLPAHFLCLRRQ*GICVSLERTWG
Trigger: CCCCCATGTCCTCTCTAAGCTTACGCAGATACCTCATTGTCTCCTCAGACACAGGAAGTGGGCAGGGAGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
3UTR CCA 72 bp AACCCTAAATGGAGGGAAAGGTGTGAGCAACGAGTTTaGGGGCTTACAGGAGAACGTAGAAAAGGTAAGTGT +
Preference number: 3 (lower is better)
Translates to: NPKWRERCEQRV*GLTGERRKGKC
Trigger: ACACTTACCTTTTCTACGTTCTCCTGTAAGCCCCCAAACTCGTTGCTCACACCTTTCCCTCCATTTAGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR TCA 90 bp CCAGGGGACGCCAGAGGCAACAGCATGAAGGCCATTCTCTGTCCCCAGCTTTCACTGGGGATCCGACCTTaGGCTGGTCGCAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PGDARGNSMKAILCPQLSLGIRP*AGRSCR
Trigger: CCTGCAGCTGCGACCAGCTCAAGGTCGGATCCCCAG...TGAAAGCTGGGGACAGAGAATGGCCTTCATGCTGTTGCCTCTGGCGTCCCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp GACCCTAGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATGGTCCCTGTCCCTCCTaGTTCCTTCTCCGACCACGG +
Preference number: 4 (lower is better)
Translates to: DPRSLPAVGSPMHDIHPHGPCPS*FLLRPR
Trigger: CCGTGGTCGGAGAAGGAACCAGGAGGGACAGGGACC...ATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCTAGGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp CCAGGGGACGCCAGAGGCAACAGCATGAAGGCCATTCTCTGTCCCCAGCTTTCAGGACCTTCCGGAGAGTaGTCCCTGTCCCTCCTGGTT +
Preference number: 4 (lower is better)
Translates to: PGDARGNSMKAILCPQLSGPSGE*SLSLLV
Trigger: AACCAGGAGGGACAGGGACCACTCTCCGGAAGGTCC...TGAAAGCTGGGGACAGAGAATGGCCTTCATGCTGTTGCCTCTGGCGTCCCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp GGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATCCTCTCTTGGGGCCTGGGGCTTTaGCTCAGAGTCCAGCACCAC +
Preference number: 4 (lower is better)
Translates to: GAFQLWALPCMISTHILSWGLGL*LRVQHH
Trigger: GTGGTGCTGGACTCTGAGCCAAAGCCCCAGGCCCCA...AGAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp GACCCTAGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATGATCCGACCTTGAGCTaGTCGCAGCTGCAGGCTAGT +
Preference number: 4 (lower is better)
Translates to: DPRSLPAVGSPMHDIHPHDPTLS*SQLQAS
Trigger: ACTAGCCTGCAGCTGCGACCAGCTCAAGGTCGGATC...ATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCTAGGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp GGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATCCTCTCTGGCATAGGCTTGATCTaGGAAGGAAGCCCGGCCTCT +
Preference number: 4 (lower is better)
Translates to: GAFQLWALPCMISTHILSGIGLI*EGSPAS
Trigger: AGAGGCCGGGCTTCCTTCCCAGATCAAGCCTATGCC...AGAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp AGCAACGAGTTTGGGGGCTTACAGGAGAACGTAGAAAAGGTAAGTGTGGAGATCCACAGTCCCCACGCGTaGCTTATGGAGGGGATCCCC +
Preference number: 4 (lower is better)
Translates to: SNEFGGLQENVEKVSVEIHSPHA*LMEGIP
Trigger: GGGGATCCCCTCCATAAGCCACGCGTGGGGACTGTG...GATCTCCACACTTACCTTTTCTACGTTCTCCTGTAAGCCCCCAAACTCGTTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CCA 90 bp AACCCTAAATGGAGGGAAAGGTGTGAGCAACGAGTTTGGGGGCTTACAGGAGAAGTGCAGGCTGGCTGTTaGCATAGGCTTGATCTGGGA +
Preference number: 4 (lower is better)
Translates to: NPKWRERCEQRVWGLTGEVQAGC*HRLDLG
Trigger: TCCCAGATCAAGCCTATGCCAACAGCCAGCCTGCAC...TTCTCCTGTAAGCCCCCAAACTCGTTGCTCACACCTTTCCCTCCATTTAGGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR TCA 90 bp AGCAACGAGTTTGGGGGCTTACAGGAGAACGTAGAAAAGGTAAGTGTGGAGATCTGGGTCCTGCTCTTCTaGCCTTGGTTCTTGAGACAG +
Preference number: 4 (lower is better)
Translates to: SNEFGGLQENVEKVSVEIWVLLF*PWFLRQ
Trigger: CTGTCTCAAGAACCAAGGTCAGAAGAGCAGGACCCA...GATCTCCACACTTACCTTTTCTACGTTCTCCTGTAAGCCCCCAAACTCGTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS GCA 90 bp GCTGGCTGTTGGCATAGGCTTGATCTGGGAAGGAAGCCCGGCCTCTaGGGGTCTGGGCACACACGGAGGCATAAAGTTCCGGCTCAGGGC +
Preference number: 5 (lower is better)
Translates to: AGCWHRLDLGRKPGL*GSGHTRRHKVPAQG
Trigger: GCCCTGAGCCGGAACTTTATGCCTCCGTGTGTGCCCAGACCCGCAGAGGCCGGGCTTCCTTCCCAGATCAAGCCTATGCCAACAGCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CCA 90 bp GGAACTTCTTCCGCGGACCTTCCGGAGAGTGGTCCCTGTCCCTCCTaGTTCCTTCTCCGACCACGGGTCCACTGGGACAAGAGTGCAGCC +
Preference number: 5 (lower is better)
Translates to: GTSSADLPESGPCPS*FLLRPRVHWDKSAA
Trigger: GGCTGCACTCTTGTCCCAGTGGACCCGTGGTCGGAGAAGGAACCAGGAGGGACAGGGACCACTCTCCGGAAGGTCCGCGGAAGAAGTTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CCA 90 bp ACAGTACTTGATGGGGTTTCCAGAGCTGGGGATCCGACCTTGAGCTaGTCGCAGCTGCAGGCTAGTGTAGCACATGGCCTCCTCCGCCCC +
Preference number: 5 (lower is better)
Translates to: TVLDGVSRAGDPTLS*SQLQASVAHGLLRP
Trigger: GGGGCGGAGGAGGCCATGTGCTACACTAGCCTGCAGCTGCGACCAGCTCAAGGTCGGATCCCCAGCTCTGGAAACCCCATCAAGTACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CAA 90 bp GGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACATCCTCTCTGCTGGGGATCCGACCTaGAGCTGGTCGCAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: GAFQLWALPCMISTHILSAGDPT*SWSQLQ
Trigger: CTGCAGCTGCGACCAGCTCAAGGTCGGATCCCCAGC...AGAGAGGATGTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS TCA 90 bp TTCTCCGACCACGGGTCCACTGGGACAAGAGTGCAGCCAATGAGATaGGAAGCAGCACCGTCACAACTCCTAAGAGGGCCCACAGTCCCC +
Preference number: 5 (lower is better)
Translates to: FSDHGSTGTRVQPMR*EAAPSQLLRGPTVP
Trigger: GGGGACTGTGGGCCCTCTTAGGAGTTGTGACGGTGCTGCTTCTCATCTCATTGGCTGCACTCTTGTCCCAGTGGACCCGTGGTCGGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CCA 90 bp AGTGGTCCCTGTCCCTCCTGGTTCCTTCTCCGACCACGGGTCCACTaGGACAAGAGTGCAGCCAATGAGATGAGAAGCAGCACCGTCACA +
Preference number: 5 (lower is better)
Translates to: SGPCPSWFLLRPRVH*DKSAANEMRSSTVT
Trigger: TGTGACGGTGCTGCTTCTCATCTCATTGGCTGCACTCTTGTCCCAGTGGACCCGTGGTCGGAGAAGGAACCAGGAGGGACAGGGACCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CAA 90 bp GGGACCCTAGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCACACCACCTCACAGTACTaGATGGGGTTTCCAGAGCTG +
Preference number: 5 (lower is better)
Translates to: GTLGAFQLWALPCMISTHTTSQY*MGFPEL
Trigger: CAGCTCTGGAAACCCCATCAAGTACTGTGAGGTGGT...GTGGGTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCTAGGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CAA 90 bp CTCAGCAAAGTCTCAATGCCCTGGAGGTGGTTAGAAACCAAACATGCCCTAGCCCTGGGGCCTGGGGCTTaGGCTCAGAGTCCAGCACCA +
Preference number: 5 (lower is better)
Translates to: LSKVSMPWRWLETKHALALGPGA*AQSPAP
Trigger: TGGTGCTGGACTCTGAGCCAAAGCCCCAGGCCCCAG...GGCTAGGGCATGTTTGGTTTCTAACCACCTCCAGGGCATTGAGACTTTGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS-3UTR CAA 90 bp ACTTGGGACCCTAGGAGCCTTCCAGCTGTGGGCTCTCCCATGCATGATATCCACCCTGCTCTTCTGACCTaGGTTCTTGAGACAGCCGAC +
Preference number: 5 (lower is better)
Translates to: TWDPRSLPAVGSPMHDIHPALLT*VLETAD
Trigger: GTCGGCTGTCTCAAGAACCAAGGTCAGAAGAGCAGG...GTGGATATCATGCATGGGAGAGCCCACAGCTGGAAGGCTCCTAGGGTCCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS GCA 90 bp ACCTTGGTTCTTGAGACAGCCGACCTGTCTGTAAATAGTGCAGGTTaGCATACAGGGGAACTTCTTCCGCGGACCTTCCGGAGAGTGGTC +
Preference number: 5 (lower is better)
Translates to: TLVLETADLSVNSAG*HTGELLPRTFRRVV
Trigger: GACCACTCTCCGGAAGGTCCGCGGAAGAAGTTCCCCTGTATGGCAACCTGCACTATTTACAGACAGGTCGGCTGTCTCAAGAACCAAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CCA 72 bp TCCGCGGACCTTCCGGAGAGTGGTCCCTGTCCCTCCTaGTTCCTTCTCCGACCACGGGTCCACTGGGACAAG +
Preference number: 6 (lower is better)
Translates to: SADLPESGPCPS*FLLRPRVHWDK
Trigger: CTTGTCCCAGTGGACCCGTGGTCGGAGAAGGAACCAGGAGGGACAGGGACCACTCTCCGGAAGGTCCGCGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CCA 72 bp GATGGGGTTTCCAGAGCTGGGGATCCGACCTTGAGCTaGTCGCAGCTGCAGGCTAGTGTAGCACATGGCCTC +
Preference number: 6 (lower is better)
Translates to: DGVSRAGDPTLS*SQLQASVAHGL
Trigger: GAGGCCATGTGCTACACTAGCCTGCAGCTGCGACCAGCTCAAGGTCGGATCCCCAGCTCTGGAAACCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CAA 90 bp CACCTCACAGTACTTGATGGGGTTTCCAGAGCTGGGGATCCGACCTaGAGCTGGTCGCAGCTGCAGGCTAGTGTAGCACATGGCCTCCTC +
Preference number: 6 (lower is better)
Translates to: HLTVLDGVSRAGDPT*SWSQLQASVAHGLL
Trigger: GAGGAGGCCATGTGCTACACTAGCCTGCAGCTGCGACCAGCTCAAGGTCGGATCCCCAGCTCTGGAAACCCCATCAAGTACTGTGAGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS TCA 72 bp CACGGGTCCACTGGGACAAGAGTGCAGCCAATGAGATaGGAAGCAGCACCGTCACAACTCCTAAGAGGGCCC +
Preference number: 6 (lower is better)
Translates to: HGSTGTRVQPMR*EAAPSQLLRGP
Trigger: GGGCCCTCTTAGGAGTTGTGACGGTGCTGCTTCTCATCTCATTGGCTGCACTCTTGTCCCAGTGGACCCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CCA 72 bp TGTCCCTCCTGGTTCCTTCTCCGACCACGGGTCCACTaGGACAAGAGTGCAGCCAATGAGATGAGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: CPSWFLLRPRVH*DKSAANEMRSS
Trigger: GCTGCTTCTCATCTCATTGGCTGCACTCTTGTCCCAGTGGACCCGTGGTCGGAGAAGGAACCAGGAGGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS CAA 90 bp CCCTGGCAAGGCCTCCAGAGGATGGTGGGTCCTGCTCTTCTGACCTaGGTTCTTGAGACAGCCGACCTGTCTGTAAATAGTGCAGGTTGC +
Preference number: 6 (lower is better)
Translates to: PWQGLQRMVGPALLT*VLETADLSVNSAGC
Trigger: GCAACCTGCACTATTTACAGACAGGTCGGCTGTCTCAAGAACCAAGGTCAGAAGAGCAGGACCCACCATCCTCTGGAGGCCTTGCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS TCA 72 bp GCTTTGGCTCAGAGTCCAGCACCACCTCACAGTACTTaGTGGGGTTTCCAGAGCTGGGGATCCGACCTTGAG +
Preference number: 6 (lower is better)
Translates to: ALAQSPAPPHST*WGFQSWGSDLE
Trigger: CTCAAGGTCGGATCCCCAGCTCTGGAAACCCCATCAAGTACTGTGAGGTGGTGCTGGACTCTGAGCCAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7
CDS GCA 72 bp CTTGAGACAGCCGACCTGTCTGTAAATAGTGCAGGTTaGCATACAGGGGAACTTCTTCCGCGGACCTTCCGG +
Preference number: 6 (lower is better)
Translates to: LETADLSVNSAG*HTGELLPRTFR
Trigger: CCGGAAGGTCCGCGGAAGAAGTTCCCCTGTATGGCAACCTGCACTATTTACAGACAGGTCGGCTGTCTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030180.7