RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SIRT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029524

Ensembl transcript IDs: ENSMUST00000112066.2, ENSMUST00000112067.8

Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTTTCCTTAGGGGGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTaGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGA +
Preference number: 1 (lower is better)
Translates to: LSLGGSSHFCKQEGA*PLDVALPPLGFRVG
Trigger: TCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCCCCCTAAGGAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR CCA 90 bp TACCAGAAGGCGACACAGCTACTCCATCAAGAGCAGCTATTTCTTTaGAAAAGTCTTTCCTTAGGGGGCAGCTCTCATTTCTGTAAACAG +
Preference number: 1 (lower is better)
Translates to: YQKATQLLHQEQLFL*KSLSLGGSSHFCKQ
Trigger: CTGTTTACAGAAATGAGAGCTGCCCCCTAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCTTGATGGAGTAGCTGTGTCGCCTTCTGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR-3UTR TCA 90 bp TCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGAATTAACAGTTGTGGTTTACTaGCTTCTGCCTGGTCCTTCT +
Preference number: 2 (lower is better)
Translates to: SCHQKYQSASVRHIHLELTVVVY*LLPGPS
Trigger: AGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGT...TAATTCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR-3UTR CCA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTCCTCATAGACAGTTGTaGTTTACTGACTTCTGCCTG +
Preference number: 2 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFPHRQL*FTDFCL
Trigger: CAGGCAGAAGTCAGTAAACCACAACTGTCTATGAGG...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR-3UTR CCA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGAGCAGCTATTTCTTTaGAAAAGTCTTTCCTTAGGG +
Preference number: 2 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFEQLFL*KSLSLG
Trigger: CCCTAAGGAAAGACTTTTCCAAAGAAATAGCTGCTC...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR CCA 72 bp GGGGGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTaGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTC +
Preference number: 3 (lower is better)
Translates to: GGSSHFCKQEGA*PLDVALPPLGF
Trigger: GAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR GCA 72 bp GTTGCCCCTCATAGACAGTTGTGGTTTACTGACTTCTaGCTGGTCCTTCTTCCGGTTACCAGAAGGCGACAC +
Preference number: 3 (lower is better)
Translates to: VAPHRQLWFTDF*LVLLPVTRRRH
Trigger: GTGTCGCCTTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTATGAGGGGCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR CCA 72 bp GAGATCTATCTCCACGTTGCCCCTCATAGACAGTTGTaGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTT +
Preference number: 3 (lower is better)
Translates to: EIYLHVAPHRQL*FTDFCLVLLPV
Trigger: AACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTATGAGGGGCAACGTGGAGATAGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR-3UTR CAA 90 bp ATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAAGAGCAGCTATTTCTTaGGAAAAGTCTTTCCTTAGG +
Preference number: 3 (lower is better)
Translates to: IDSCGLLTSAWSFFRLPERAAIS*EKSFLR
Trigger: CCTAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCT...TTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp GGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAGGCGACACAGCTCGGGCCCAGTACCGCTaGCGGACCGGAGCACTGCGG +
Preference number: 4 (lower is better)
Translates to: GLLTSAWSFFRLPEGDTARAQYR*RTGALR
Trigger: CCGCAGTGCTCCGGTCCGCCAGCGGTACTGGGCCCG...AGCTGTGTCGCCTTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp TGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCTCACAGCACGGGACCTaGAAGCTCCGGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: CLASRRGFATSRIQSWSGSQHGT*KLRTCS
Trigger: GGAGCAGGTCCGGAGCTTTCAGGTCCCGTGCTGTGA...GCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp CCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCATTGGGGTCACAGCACGGGACCTaGAAGCTCCGGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: PLDVALPPLGFRVGAALGSQHGT*KLRTCS
Trigger: GGAGCAGGTCCGGAGCTTTCAGGTCCCGTGCTGTGA...CCCCAATGCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp TGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCGGTCCAAAGGAGGGCTaGGCGGCACAAATAACCCCG +
Preference number: 4 (lower is better)
Translates to: CLASRRGFATSRIQSWSGGPKEG*AAQITP
Trigger: CGGGGTTATTTGTGCCGCCCAGCCCTCCTTTGGACC...GCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp TCCTTAGGGGGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACAGCTCCGTCAGCCGCTaGCTCCCTGCTTTGGAGTGC +
Preference number: 4 (lower is better)
Translates to: SLGGSSHFCKQEGAWPLDSSVSR*LPALEC
Trigger: GCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCT...GTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCCCCCTAAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp TCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCCTCGGCGCTCCAGCTaGGGTTCAGGGCTTGGAAGC +
Preference number: 4 (lower is better)
Translates to: SHFCKQEGAWPLDVALPPPRRSS*GSGLGS
Trigger: GCTTCCAAGCCCTGAACCCCAGCTGGAGCGCCGAGG...AGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp CATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTAGCTTGGAAGCGTTCCTaGAGCACCCTGCGGGCAGTC +
Preference number: 4 (lower is better)
Translates to: HFCKQEGAWPLDVALPPLAWKRS*STLRAV
Trigger: GACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGC...TAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp TGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCAATCAATGTGCTGGATaGGTCTCCGGTCAGTGCGGG +
Preference number: 4 (lower is better)
Translates to: CLASRRGFATSRIQSWSGNQCAG*VSGQCG
Trigger: CCCGCACTGACCGGAGACCCATCCAGCACATTGATT...GCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp GGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCTGGGGTTCAGGGCTTaGAAGCGTTCCTGCAGCACC +
Preference number: 4 (lower is better)
Translates to: GSSHFCKQEGAWPLDVALLGFRA*KRSCST
Trigger: GGTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAG...CAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp TGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTCACCTGTAGTCTGGGATaGCGGACTCGGTGGAGATCC +
Preference number: 4 (lower is better)
Translates to: CKQEGAWPLDVALPPLGFTCSLG*RTRWRS
Trigger: GGATCTCCACCGAGTCCGGCATCCCAGACTACAGGT...GAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp GGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGGCTCAGAGCCCAGTGTaGTGGGTTGGGTTGGTGAGA +
Preference number: 4 (lower is better)
Translates to: GSSHFCKQEGAWPLDVALAQSPV*WVGLVR
Trigger: TCTCACCAACCCAACCCAGCACACTGGGCTCTGAGC...CAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp CATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTACTGGGGTTCAGGGCTTaGAAGCGTTCCTGCAGCACC +
Preference number: 4 (lower is better)
Translates to: HFCKQEGAWPLDVALPPLLGFRA*KRSCST
Trigger: GGTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAG...TAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp CCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCATTGGGGAAGTCCCACCTTTTCTaGCCTGTAGTCTGGGATGCC +
Preference number: 4 (lower is better)
Translates to: PLDVALPPLGFRVGAALGKSHLF*PVVWDA
Trigger: GGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTT...CCCCAATGCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp GGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGAATCAATGTGCTGGATaGGTCTCCGGTCAGTGCGGG +
Preference number: 4 (lower is better)
Translates to: GSSHFCKQEGAWPLDVALNQCAG*VSGQCG
Trigger: CCCGCACTGACCGGAGACCCATCCAGCACATTGATT...CAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp TCCTTAGGGGGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACAAGTCCCACCTTTTCTaGCCTGTAGTCTGGGATGCC +
Preference number: 4 (lower is better)
Translates to: SLGGSSHFCKQEGAWPLDKSHLF*PVVWDA
Trigger: GGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTT...GTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCCCCCTAAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp TCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTGCTGACTCCCTGCTTTaGAGTGCAAAGCGTCCACGT +
Preference number: 4 (lower is better)
Translates to: SHFCKQEGAWPLDVALPPADSLL*SAKRPR
Trigger: ACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGC...AGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp CCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCATTGGGGAAAGTCAACCTTGTCTaGGTTCACCGTGTCCCCAAA +
Preference number: 4 (lower is better)
Translates to: PLDVALPPLGFRVGAALGKVNLV*VHRVPK
Trigger: TTTGGGGACACGGTGAACCCAGACAAGGTTGACTTT...CCCCAATGCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp CCTCTAGACGTGGCTTTGCCACCTCTAGGATTCAGAGTTGGAGCGGCATTGGGGAGCGCTGTAACTCTTTaGTCTTTTCAGGGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: PLDVALPPLGFRVGAALGSAVTL*SFQGPK
Trigger: CTTTGGACCCTGAAAAGATCAAAGAGTTACAGCGCT...CCCCAATGCCGCTCCAACTCTGAATCCTAGAGGTGGCAAAGCCACGTCTAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp CACGTTGCCCCTCATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTAAAGCGTCCACGTTCTaGGTCACCAACCAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: HVAPHRQLWFTDFCLVLLKASTF*VTNQCS
Trigger: GCTGCACTGGTTGGTGACTCAGAACGTGGACGCTTT...AAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTATGAGGGGCAACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp TCCTTAGGGGGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACTCTTTCACACGCCGGTaGACAAAGTCAACCTTGTCT +
Preference number: 4 (lower is better)
Translates to: SLGGSSHFCKQEGAWPLDSFTRR*TKSTLS
Trigger: AGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGA...GTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCCCCCTAAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp TCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTTTGGACATCAGAGTaGTGTCTCCGCGGGTCTATT +
Preference number: 4 (lower is better)
Translates to: SHFCKQEGAWPLDVALPPLWTSE*CLRGSI
Trigger: AATAGACCCGCGGAGACAGCACTCTGATGTCCAAAG...AGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp ATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAGGCGGACCGGAGCACTaGGGACGAAATCAATGTGCT +
Preference number: 4 (lower is better)
Translates to: IDSCGLLTSAWSFFRLPEGGPEH*GRNQCA
Trigger: AGCACATTGATTTCGTCCGCAGTGCTCCGGTCCGCC...TTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp TTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGAGCTTGGAAGCGTTCCTaGAGCACCCTGCGGGCAGTC +
Preference number: 4 (lower is better)
Translates to: LLLPSEISKCFSQTHPFGAWKRS*STLRAV
Trigger: GACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGC...TCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp CATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTATCTTTCACACGCCGGTaGACAAAGTCAACCTTGTCT +
Preference number: 4 (lower is better)
Translates to: HFCKQEGAWPLDVALPPLSFTRR*TKSTLS
Trigger: AGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGA...TAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTCCTCGGCGCTCCAGCTaGGGTTCAGGGCTTGGAAGC +
Preference number: 4 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFPRRSS*GSGLGS
Trigger: GCTTCCAAGCCCTGAACCCCAGCTGGAGCGCCGAGG...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp GGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAGGCGACACAGCTAGCGCTGTAACTCTTTaGTCTTTTCAGGGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: GLLTSAWSFFRLPEGDTASAVTL*SFQGPK
Trigger: CTTTGGACCCTGAAAAGATCAAAGAGTTACAGCGCT...AGCTGTGTCGCCTTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR TCA 90 bp CTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGAATTAGCTCCGTCAGCCGCTaGCTCCCTGCTTTGGAGTGC +
Preference number: 4 (lower is better)
Translates to: LLPSEISKCFSQTHPFGISSVSR*LPALEC
Trigger: GCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCT...AATTCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp TTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGAGGTCCAAAGGAGGGCTaGGCGGCACAAATAACCCCG +
Preference number: 4 (lower is better)
Translates to: LLLPSEISKCFSQTHPFGGPKEG*AAQITP
Trigger: CGGGGTTATTTGTGCCGCCCAGCCCTCCTTTGGACC...TCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp ATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAGCTGACTCCCTGCTTTaGAGTGCAAAGCGTCCACGT +
Preference number: 4 (lower is better)
Translates to: IDSCGLLTSAWSFFRLPEADSLL*SAKRPR
Trigger: ACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGC...TTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
3UTR CAA 72 bp AGTGAGATCTATCTCCACGTTGCCCCTCATAGACAGTaGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCG +
Preference number: 4 (lower is better)
Translates to: SEIYLHVAPHRQ*WFTDFCLVLLP
Trigger: CGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTATGAGGGGCAACGTGGAGATAGATCTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp GCGACACAGCTACTCCATCAAGAGCAGCTATTTCTTTGGAAAAGTCTTTCCTTAACCTGTAGTCTGGGATaGCGGACTCGGTGGAGATCC +
Preference number: 4 (lower is better)
Translates to: ATQLLHQEQLFLWKSLSLTCSLG*RTRWRS
Trigger: GGATCTCCACCGAGTCCGGCATCCCAGACTACAGGT...TAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCTTGATGGAGTAGCTGTGTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp GCGACACAGCTACTCCATCAAGAGCAGCTATTTCTTTGGAAAAGTCTTTCCTTAGGCGGACCGGAGCACTaGGGACGAAATCAATGTGCT +
Preference number: 4 (lower is better)
Translates to: ATQLLHQEQLFLWKSLSLGGPEH*GRNQCA
Trigger: AGCACATTGATTTCGTCCGCAGTGCTCCGGTCCGCC...TAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCTTGATGGAGTAGCTGTGTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp CAAGAGCAGCTATTTCTTTGGAAAAGTCTTTCCTTAGGGGGCAGCTCTCATTTCACAGGACTCTGTGCATaGATCCGTGGAGCTCCGTCA +
Preference number: 4 (lower is better)
Translates to: QEQLFLWKSLSLGGSSHFTGLCA*IRGAPS
Trigger: TGACGGAGCTCCACGGATGCATGCACAGAGTCCTGT...GAAATGAGAGCTGCCCCCTAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp ATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAATTCAGAATGGCTATTaGGAGCTTTTGCTCGCGGGC +
Preference number: 4 (lower is better)
Translates to: IDSCGLLTSAWSFFRLPEIQNGY*ELLLAG
Trigger: GCCCGCGAGCAAAAGCTCCCAATAGCCATTCTGAAT...TTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp CTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGAATTACAGGACTCTGTGCATaGATCCGTGGAGCTCCGTCA +
Preference number: 4 (lower is better)
Translates to: LLPSEISKCFSQTHPFGITGLCA*IRGAPS
Trigger: TGACGGAGCTCCACGGATGCATGCACAGAGTCCTGT...AATTCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR GCA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTCTTTGGACATCAGAGTaGTGTCTCCGCGGGTCTATT +
Preference number: 4 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFLWTSE*CLRGSI
Trigger: AATAGACCCGCGGAGACAGCACTCTGATGTCCAAAG...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp CAAGAGCAGCTATTTCTTTGGAAAAGTCTTTCCTTAGGGGGCAGCTCTCATTTCGGCCGATATTCAGAATaGCTATTGGGAGCTTTTGCT +
Preference number: 4 (lower is better)
Translates to: QEQLFLWKSLSLGGSSHFGRYSE*LLGAFA
Trigger: AGCAAAAGCTCCCAATAGCCATTCTGAATATCGGCC...GAAATGAGAGCTGCCCCCTAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp CTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGAATTAAAGTCAACCTTGTCTaGGTTCACCGTGTCCCCAAA +
Preference number: 4 (lower is better)
Translates to: LLPSEISKCFSQTHPFGIKVNLV*VHRVPK
Trigger: TTTGGGGACACGGTGAACCCAGACAAGGTTGACTTT...AATTCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CCA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGCCGATATTCAGAATaGCTATTGGGAGCTTTTGCT +
Preference number: 4 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFGRYSE*LLGAFA
Trigger: AGCAAAAGCTCCCAATAGCCATTCTGAATATCGGCC...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp GGAGCCACGCCCTGCGCCTCGGCGCTCCAGCTGGGGTTCAGGGCTTaGAAGCGTTCCTGCAGCACCCTGCGGGCAGTCTGCTCCCCACAG +
Preference number: 5 (lower is better)
Translates to: GATPCASALQLGFRA*KRSCSTLRAVCSPQ
Trigger: CTGTGGGGAGCAGACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAGCTGGAGCGCCGAGGCGCAGGGCGTGGCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp TGCGCCTCGGCGCTCCAGCTGGGGTTCAGGGCTTGGAAGCGTTCCTaGAGCACCCTGCGGGCAGTCTGCTCCCCACAGTTCAGGCACAGG +
Preference number: 5 (lower is better)
Translates to: CASALQLGFRAWKRS*STLRAVCSPQFRHR
Trigger: CCTGTGCCTGAACTGTGGGGAGCAGACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAGCTGGAGCGCCGAGGCGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS TCA 90 bp CTGGATGGGTCTCCGGTCAGTGCGGGCGTAAAGTCCCACCTTTTCTaGCCTGTAGTCTGGGATGCCGGACTCGGTGGAGATCCCCGCGCC +
Preference number: 5 (lower is better)
Translates to: LDGSPVSAGVKSHLF*PVVWDAGLGGDPRA
Trigger: GGCGCGGGGATCTCCACCGAGTCCGGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTTTACGCCCGCACTGACCGGAGACCCATCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp AGCCCACAAAGTTTCGGGCCCAGTACCGCTGGCGGACCGGAGCACTaGGGACGAAATCAATGTGCTGGATGGGTCTCCGGTCAGTGCGGG +
Preference number: 5 (lower is better)
Translates to: SPQSFGPSTAGGPEH*GRNQCAGWVSGQCG
Trigger: CCCGCACTGACCGGAGACCCATCCAGCACATTGATTTCGTCCGCAGTGCTCCGGTCCGCCAGCGGTACTGGGCCCGAAACTTTGTGGGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp GGGTTCAGGGCTTGGAAGCGTTCCTGCAGCACCCTGCGGGCAGTCTaGTCCCCACAGTTCAGGCACAGGACTCTGTGCATGCATCCGTGG +
Preference number: 5 (lower is better)
Translates to: GFRAWKRSCSTLRAV*SPQFRHRTLCMHPW
Trigger: CCACGGATGCATGCACAGAGTCCTGTGCCTGAACTGTGGGGAGCAGACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGCCCTGAACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp TGCGGGCAGTCTGCTCCCCACAGTTCAGGCACAGGACTCTGTGCATaGATCCGTGGAGCTCCGTCAGCCGCTGACTCCCTGCTTTGGAGT +
Preference number: 5 (lower is better)
Translates to: CGQSAPHSSGTGLCA*IRGAPSAADSLLWS
Trigger: ACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCTCCACGGATGCATGCACAGAGTCCTGTGCCTGAACTGTGGGGAGCAGACTGCCCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp ACCGCTGGCGGACCGGAGCACTGCGGACGAAATCAATGTGCTGGATaGGTCTCCGGTCAGTGCGGGCGTAAAGTCCCACCTTTTCTGACC +
Preference number: 5 (lower is better)
Translates to: TAGGPEHCGRNQCAG*VSGQCGRKVPPFLT
Trigger: GGTCAGAAAAGGTGGGACTTTACGCCCGCACTGACCGGAGACCCATCCAGCACATTGATTTCGTCCGCAGTGCTCCGGTCCGCCAGCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp CAGTGCGGGCGTAAAGTCCCACCTTTTCTGACCTGTAGTCTGGGATaGCGGACTCGGTGGAGATCCCCGCGCCTGTCATCACGAGGAGTT +
Preference number: 5 (lower is better)
Translates to: QCGRKVPPFLTCSLG*RTRWRSPRLSSRGV
Trigger: AACTCCTCGTGATGACAGGCGCGGGGATCTCCACCGAGTCCGGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTTTACGCCCGCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp CCAGTGCAGCTTCCCCAGTCTCTCCCAGTTGCTCAGAGCCCAGTGTaGTGGGTTGGGTTGGTGAGAGGAGAATTGAGGCCAGCCCACAAA +
Preference number: 5 (lower is better)
Translates to: PVQLPQSLPVAQSPV*WVGLVRGELRPAHK
Trigger: TTTGTGGGCTGGCCTCAATTCTCCTCTCACCAACCCAACCCAGCACACTGGGCTCTGAGCAACTGGGAGAGACTGGGGAAGCTGCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp GACTCTGTGCATGCATCCGTGGAGCTCCGTCAGCCGCTGACTCCCTaGTTTGGAGTGCAAAGCGTCCACGTTCTGAGTCACCAACCAGTG +
Preference number: 5 (lower is better)
Translates to: DSVHASVELRQPLTP*FGVQSVHVLSHQPV
Trigger: CACTGGTTGGTGACTCAGAACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCTCCACGGATGCATGCACAGAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp GCTTCCCCAGTCTCTCCCAGTTGCTCAGAGCCCAGTGTGCTGGGTTaGGTTGGTGAGAGGAGAATTGAGGCCAGCCCACAAAGTTTCGGG +
Preference number: 5 (lower is better)
Translates to: ASPVSPSCSEPSVLG*VGERRIEASPQSFG
Trigger: CCCGAAACTTTGTGGGCTGGCCTCAATTCTCCTCTCACCAACCCAACCCAGCACACTGGGCTCTGAGCAACTGGGAGAGACTGGGGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp TGTGCATGCATCCGTGGAGCTCCGTCAGCCGCTGACTCCCTGCTTTaGAGTGCAAAGCGTCCACGTTCTGAGTCACCAACCAGTGCAGCT +
Preference number: 5 (lower is better)
Translates to: CACIRGAPSAADSLL*SAKRPRSESPTSAA
Trigger: AGCTGCACTGGTTGGTGACTCAGAACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCTCCACGGATGCATGCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp TCCTTAGGGGGCAGCTCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGCTGGGGTTCAGGGCTaGGAAGCGTTCCTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: SLGGSSHFCKQEGAWPLDAGVQG*EAFLQH
Trigger: GTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAGC...GTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGAGCTGCCCCCTAAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp GAGCACTGCGGACGAAATCAATGTGCTGGATGGGTCTCCGGTCAGTaGGGGCGTAAAGTCCCACCTTTTCTGACCTGTAGTCTGGGATGC +
Preference number: 5 (lower is better)
Translates to: EHCGRNQCAGWVSGQ*GRKVPPFLTCSLGC
Trigger: GCATCCCAGACTACAGGTCAGAAAAGGTGGGACTTTACGCCCGCACTGACCGGAGACCCATCCAGCACATTGATTTCGTCCGCAGTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp AAAGTCCCACCTTTTCTGACCTGTAGTCTGGGATGCCGGACTCGGTaGAGATCCCCGCGCCTGTCATCACGAGGAGTTTCTTGGAAAGGC +
Preference number: 5 (lower is better)
Translates to: KVPPFLTCSLGCRTR*RSPRLSSRGVSWKG
Trigger: GCCTTTCCAAGAAACTCCTCGTGATGACAGGCGCGGGGATCTCCACCGAGTCCGGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp GGAGTCCGCCTCTTTCACACGCCGGTGCACAAAGTCAACCTTGTCTaGGTTCACCGTGTCCCCAAAGAAAACGACGTCCGGTTTCAGAGG +
Preference number: 5 (lower is better)
Translates to: GVRLFHTPVHKVNLV*VHRVPKENDVRFQR
Trigger: CCTCTGAAACCGGACGTCGTTTTCTTTGGGGACACGGTGAACCCAGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGAGGCGGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp GATGATCCCACCACCAGTAGGGAGTCCGCCTCTTTCACACGCCGGTaGACAAAGTCAACCTTGTCTGGGTTCACCGTGTCCCCAAAGAAA +
Preference number: 5 (lower is better)
Translates to: DDPTTSRESASFTRR*TKSTLSGFTVSPKK
Trigger: TTTCTTTGGGGACACGGTGAACCCAGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGAGGCGGACTCCCTACTGGTGGTGGGATCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 90 bp AGCCAAATCGTCAGACCGGGTGGGGCCGATATTCAGAATGGCTATTaGGAGCTTTTGCTCGCGGGCGGTGAGGATGAACCTGTAACCAGA +
Preference number: 5 (lower is better)
Translates to: SQIVRPGGADIQNGY*ELLLAGGEDEPVTR
Trigger: TCTGGTTACAGGTTCATCCTCACCGCCCGCGAGCAAAAGCTCCCAATAGCCATTCTGAATATCGGCCCCACCCGGTCTGACGATTTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 90 bp GCGGAACTCAGAGGAAAGTTCATTTCCAGCCTTTGGACATCAGAGTaGTGTCTCCGCGGGTCTATTAAAGGCAGCAACTCTCCACAGCGG +
Preference number: 5 (lower is better)
Translates to: AELRGKFISSLWTSE*CLRGSIKGSNSPQR
Trigger: CCGCTGTGGAGAGTTGCTGCCTTTAATAGACCCGCGGAGACAGCACTCTGATGTCCAAAGGCTGGAAATGAACTTTCCTCTGAGTTCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp CATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTATTGGTGAGAGGAGAATaGAGGCCAGCCCACAAAGTT +
Preference number: 5 (lower is better)
Translates to: HFCKQEGAWPLDVALPPLLVRGE*RPAHKV
Trigger: AACTTTGTGGGCTGGCCTCAATTCTCCTCTCACCAA...TAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp TGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTCTAGGATTCGTTCATTTCCAGCCTTaGGACATCAGAGTGCTGTCT +
Preference number: 5 (lower is better)
Translates to: CKQEGAWPLDVALPPLGFVHFQP*DIRVLS
Trigger: AGACAGCACTCTGATGTCCAAAGGCTGGAAATGAAC...GAATCCTAGAGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp TCTCATTTCTGTAAACAGGAGGGTGCCTGGCCTCTAGACGTGGCTTTGCCACCTGTTCATTTCCAGCCTTaGGACATCAGAGTGCTGTCT +
Preference number: 5 (lower is better)
Translates to: SHFCKQEGAWPLDVALPPVHFQP*DIRVLS
Trigger: AGACAGCACTCTGATGTCCAAAGGCTGGAAATGAAC...AGGTGGCAAAGCCACGTCTAGAGGCCAGGCACCCTCCTGTTTACAGAAATGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp ATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAGTGTGCTGGGTTGGGTaGGTGAGAGGAGAATTGAGG +
Preference number: 5 (lower is better)
Translates to: IDSCGLLTSAWSFFRLPEVCWVG*VRGELR
Trigger: CCTCAATTCTCCTCTCACCAACCCAACCCAGCACAC...TTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp TTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGGACCCAGTCTCTCCCAGTaGCTCAGAGCCCAGTGTGCT +
Preference number: 5 (lower is better)
Translates to: LLLPSEISKCFSQTHPFGPSLSQ*LRAQCA
Trigger: AGCACACTGGGCTCTGAGCAACTGGGAGAGACTGGG...TCCAAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTGCTGGGGTTCAGGGCTaGGAAGCGTTCCTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFAGVQG*EAFLQH
Trigger: GTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAGC...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp GGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAGGCGACACAGCTAAGCGCTGTAACTCTTaGATCTTTTCAGGGTCCAAA +
Preference number: 5 (lower is better)
Translates to: GLLTSAWSFFRLPEGDTAKRCNS*IFSGSK
Trigger: TTTGGACCCTGAAAAGATCAAAGAGTTACAGCGCTT...AGCTGTGTCGCCTTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp CTATTGCTCCTGCCATCAGAAATATCAAAGTGCTTCAGTCAGACACATCCATTTCCCAGTCTCTCCCAGTaGCTCAGAGCCCAGTGTGCT +
Preference number: 5 (lower is better)
Translates to: LLLLPSEISKCFSQTHPFPSLSQ*LRAQCA
Trigger: AGCACACTGGGCTCTGAGCAACTGGGAGAGACTGGG...AAATGGATGTGTCTGACTGAAGCACTTTGATATTTCTGATGGCAGGAGCAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp CAAGAGCAGCTATTTCTTTGGAAAAGTCTTTCCTTAGGGGGCAGCTCTCATTTCTTGGTGAGAGGAGAATaGAGGCCAGCCCACAAAGTT +
Preference number: 5 (lower is better)
Translates to: QEQLFLWKSLSLGGSSHFLVRGE*RPAHKV
Trigger: AACTTTGTGGGCTGGCCTCAATTCTCCTCTCACCAA...GAAATGAGAGCTGCCCCCTAAGGAAAGACTTTTCCAAAGAAATAGCTGCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS-3UTR CAA 90 bp ATAGACAGTTGTGGTTTACTGACTTCTGCCTGGTCCTTCTTCCGGTTACCAGAAAAGCGCTGTAACTCTTaGATCTTTTCAGGGTCCAAA +
Preference number: 5 (lower is better)
Translates to: IDSCGLLTSAWSFFRLPEKRCNS*IFSGSK
Trigger: TTTGGACCCTGAAAAGATCAAAGAGTTACAGCGCTT...TTCTGGTAACCGGAAGAAGGACCAGGCAGAAGTCAGTAAACCACAACTGTCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 90 bp GGGAGCCACGCCCTGCGCCTCGGCGCTCCAGCTGGGGTTCAGGGCTaGGAAGCGTTCCTGCAGCACCCTGCGGGCAGTCTGCTCCCCACA +
Preference number: 6 (lower is better)
Translates to: GSHALRLGAPAGVQG*EAFLQHPAGSLLPT
Trigger: TGTGGGGAGCAGACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAGCTGGAGCGCCGAGGCGCAGGGCGTGGCTCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 72 bp GCCCTGCGCCTCGGCGCTCCAGCTGGGGTTCAGGGCTaGGAAGCGTTCCTGCAGCACCCTGCGGGCAGTCTG +
Preference number: 6 (lower is better)
Translates to: ALRLGAPAGVQG*EAFLQHPAGSL
Trigger: CAGACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGCCCTGAACCCCAGCTGGAGCGCCGAGGCGCAGGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp AGTTTCGGGCCCAGTACCGCTGGCGGACCGGAGCACTaGGGACGAAATCAATGTGCTGGATGGGTCTCCGGT +
Preference number: 6 (lower is better)
Translates to: SFGPSTAGGPEH*GRNQCAGWVSG
Trigger: ACCGGAGACCCATCCAGCACATTGATTTCGTCCGCAGTGCTCCGGTCCGCCAGCGGTACTGGGCCCGAAACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp GCTTGGAAGCGTTCCTGCAGCACCCTGCGGGCAGTCTaGTCCCCACAGTTCAGGCACAGGACTCTGTGCATG +
Preference number: 6 (lower is better)
Translates to: AWKRSCSTLRAV*SPQFRHRTLCM
Trigger: CATGCACAGAGTCCTGTGCCTGAACTGTGGGGAGCAGACTGCCCGCAGGGTGCTGCAGGAACGCTTCCAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 72 bp GGACCGGAGCACTGCGGACGAAATCAATGTGCTGGATaGGTCTCCGGTCAGTGCGGGCGTAAAGTCCCACCT +
Preference number: 6 (lower is better)
Translates to: GPEHCGRNQCAG*VSGQCGRKVPP
Trigger: AGGTGGGACTTTACGCCCGCACTGACCGGAGACCCATCCAGCACATTGATTTCGTCCGCAGTGCTCCGGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS TCA 72 bp ACTCTGTGCATGCATCCGTGGAGCTCCGTCAGCCGCTaGCTCCCTGCTTTGGAGTGCAAAGCGTCCACGTTC +
Preference number: 6 (lower is better)
Translates to: TLCMHPWSSVSR*LPALECKASTF
Trigger: GAACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCTCCACGGATGCATGCACAGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp CATGCATCCGTGGAGCTCCGTCAGCCGCTGACTCCCTaGTTTGGAGTGCAAAGCGTCCACGTTCTGAGTCAC +
Preference number: 6 (lower is better)
Translates to: HASVELRQPLTP*FGVQSVHVLSH
Trigger: GTGACTCAGAACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCTCCACGGATGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 72 bp ATCCGTGGAGCTCCGTCAGCCGCTGACTCCCTGCTTTaGAGTGCAAAGCGTCCACGTTCTGAGTCACCAACC +
Preference number: 6 (lower is better)
Translates to: IRGAPSAADSLL*SAKRPRSESPT
Trigger: GGTTGGTGACTCAGAACGTGGACGCTTTGCACTCCAAAGCAGGGAGTCAGCGGCTGACGGAGCTCCACGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS TCA 72 bp TCTCCGGTCAGTGCGGGCGTAAAGTCCCACCTTTTCTaGCCTGTAGTCTGGGATGCCGGACTCGGTGGAGAT +
Preference number: 6 (lower is better)
Translates to: SPVSAGVKSHLF*PVVWDAGLGGD
Trigger: ATCTCCACCGAGTCCGGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTTTACGCCCGCACTGACCGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp CGTAAAGTCCCACCTTTTCTGACCTGTAGTCTGGGATaGCGGACTCGGTGGAGATCCCCGCGCCTGTCATCA +
Preference number: 6 (lower is better)
Translates to: RKVPPFLTCSLG*RTRWRSPRLSS
Trigger: TGATGACAGGCGCGGGGATCTCCACCGAGTCCGGCATCCCAGACTACAGGTCAGAAAAGGTGGGACTTTACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp ACCACCAGTAGGGAGTCCGCCTCTTTCACACGCCGGTaGACAAAGTCAACCTTGTCTGGGTTCACCGTGTCC +
Preference number: 6 (lower is better)
Translates to: TTSRESASFTRR*TKSTLSGFTVS
Trigger: GGACACGGTGAACCCAGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGAGGCGGACTCCCTACTGGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 72 bp CCTTTTCTGACCTGTAGTCTGGGATGCCGGACTCGGTaGAGATCCCCGCGCCTGTCATCACGAGGAGTTTCT +
Preference number: 6 (lower is better)
Translates to: PFLTCSLGCRTR*RSPRLSSRGVS
Trigger: AGAAACTCCTCGTGATGACAGGCGCGGGGATCTCCACCGAGTCCGGCATCCCAGACTACAGGTCAGAAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 90 bp GTCAGACCGGGTGGGGCCGATATTCAGAATGGCTATTGGGAGCTTTaGCTCGCGGGCGGTGAGGATGAACCTGTAACCAGAGTACACCTG +
Preference number: 6 (lower is better)
Translates to: VRPGGADIQNGYWEL*LAGGEDEPVTRVHL
Trigger: CAGGTGTACTCTGGTTACAGGTTCATCCTCACCGCCCGCGAGCAAAAGCTCCCAATAGCCATTCTGAATATCGGCCCCACCCGGTCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 90 bp AGTAGGGAGTCCGCCTCTTTCACACGCCGGTGCACAAAGTCAACCTaGTCTGGGTTCACCGTGTCCCCAAAGAAAACGACGTCCGGTTTC +
Preference number: 6 (lower is better)
Translates to: SRESASFTRRCTKST*SGFTVSPKKTTSGF
Trigger: GAAACCGGACGTCGTTTTCTTTGGGGACACGGTGAACCCAGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGAGGCGGACTCCCTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CCA 72 bp CTCTTTCACACGCCGGTGCACAAAGTCAACCTTGTCTaGGTTCACCGTGTCCCCAAAGAAAACGACGTCCGG +
Preference number: 6 (lower is better)
Translates to: LFHTPVHKVNLV*VHRVPKENDVR
Trigger: CCGGACGTCGTTTTCTTTGGGGACACGGTGAACCCAGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 72 bp TCCGCCTCTTTCACACGCCGGTGCACAAAGTCAACCTaGTCTGGGTTCACCGTGTCCCCAAAGAAAACGACG +
Preference number: 6 (lower is better)
Translates to: SASFTRRCTKST*SGFTVSPKKTT
Trigger: CGTCGTTTTCTTTGGGGACACGGTGAACCCAGACAAGGTTGACTTTGTGCACCGGCGTGTGAAAGAGGCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 72 bp GGTGGGGCCGATATTCAGAATGGCTATTGGGAGCTTTaGCTCGCGGGCGGTGAGGATGAACCTGTAACCAGA +
Preference number: 6 (lower is better)
Translates to: GGADIQNGYWEL*LAGGEDEPVTR
Trigger: TCTGGTTACAGGTTCATCCTCACCGCCCGCGAGCAAAAGCTCCCAATAGCCATTCTGAATATCGGCCCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp GGACGAAATCAATGTGCTGGATGGGTCTCCGGTCAGTaGGGGCGTAAAGTCCCACCTTTTCTGACCTGTAGT +
Preference number: 6 (lower is better)
Translates to: GRNQCAGWVSGQ*GRKVPPFLTCS
Trigger: ACTACAGGTCAGAAAAGGTGGGACTTTACGCCCGCACTGACCGGAGACCCATCCAGCACATTGATTTCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 90 bp CCGGACTCGGTGGAGATCCCCGCGCCTGTCATCACGAGGAGTTTCTaGGAAAGGCTAATGAAGCGCTGTAACTCTTTGATCTTTTCAGGG +
Preference number: 6 (lower is better)
Translates to: PDSVEIPAPVITRSF*ERLMKRCNSLIFSG
Trigger: CCCTGAAAAGATCAAAGAGTTACAGCGCTTCATTAGCCTTTCCAAGAAACTCCTCGTGATGACAGGCGCGGGGATCTCCACCGAGTCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 72 bp GTGGAGATCCCCGCGCCTGTCATCACGAGGAGTTTCTaGGAAAGGCTAATGAAGCGCTGTAACTCTTTGATC +
Preference number: 6 (lower is better)
Translates to: VEIPAPVITRSF*ERLMKRCNSLI
Trigger: GATCAAAGAGTTACAGCGCTTCATTAGCCTTTCCAAGAAACTCCTCGTGATGACAGGCGCGGGGATCTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS GCA 72 bp AGAGGAAAGTTCATTTCCAGCCTTTGGACATCAGAGTaGTGTCTCCGCGGGTCTATTAAAGGCAGCAACTCT +
Preference number: 6 (lower is better)
Translates to: RGKFISSLWTSE*CLRGSIKGSNS
Trigger: AGAGTTGCTGCCTTTAATAGACCCGCGGAGACAGCACTCTGATGTCCAAAGGCTGGAAATGAACTTTCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8
CDS CAA 90 bp ATCACGAGGAGTTTCTTGGAAAGGCTAATGAAGCGCTGTAACTCTTaGATCTTTTCAGGGTCCAAAGGAGGGCTGGGCGGCACAAATAAC +
Preference number: 6 (lower is better)
Translates to: ITRSFLERLMKRCNS*IFSGSKGGLGGTNN
Trigger: GTTATTTGTGCCGCCCAGCCCTCCTTTGGACCCTGAAAAGATCAAAGAGTTACAGCGCTTCATTAGCCTTTCCAAGAAACTCCTCGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112066.2
ENSMUST00000112067.8