Pregenerated sensors for SINHCAF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039985Ensembl transcript IDs: ENSMUST00000054080.15, ENSMUST00000081956.12, ENSMUST00000203164.3, ENSMUST00000204435.3
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAACTGTGCCCCATGCATCCCCAGGACTCACACATTCTGATGAAGTaGTTTCTAACCACGTGCTCTCTACTTTGTGGTCATGCTTTGGGA | + |
|
Preference number: 1 (lower is better) Translates to: QLCPMHPQDSHILMK*FLTTCSLLCGHALG Trigger: TCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAACCACTTCATCAGAATGTGTGAGTCCTGGGGATGCATGGGGCACAGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR GCA 90 bp | CATCCCCAGGACTCACACATTCTGATGAAGTGGTTTCTAACCACGTaGTCTCTACTTTGTGGTCATGCTTTGGGACTATCCCTAGTCAAC | + |
|
Preference number: 1 (lower is better) Translates to: HPQDSHILMKWFLTT*SLLCGHALGLSLVN Trigger: GTTGACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAACCACTTCATCAGAATGTGTGAGTCCTGGGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR TCA 90 bp | TTAGACAACTTCAGTTGGGTTCCACTGAGAAGCCAACCGAATCATTaGGATCTAGAGGTGTGGAGCTCCATTCAGTTTCTTGATGTTAAG | + |
|
Preference number: 1 (lower is better) Translates to: LDNFSWVPLRSQPNH*DLEVWSSIQFLDVK Trigger: CTTAACATCAAGAAACTGAATGGAGCTCCACACCTCTAGATCTCAATGATTCGGTTGGCTTCTCAGTGGAACCCAACTGAAGTTGTCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR GCA 90 bp | GGACCTGGCAACGCCTTAGCATTTACAAATTTTAACTACCTTCTAGGGGCAGGTAGAGGTGCCGGCCCCTaGTCCTCGGGCTTCTCGGCA | + |
|
Preference number: 2 (lower is better) Translates to: GPGNALAFTNFNYLLGAGRGAGP*SSGFSA Trigger: TGCCGAGAAGCCCGAGGAGCAGGGGCCGGCACCTCT...ACCTGCCCCTAGAAGGTAGTTAAAATTTGTAAATGCTAAGGCGTTGCCAGGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000203164.3 |
||
| 3UTR-3UTR TCA 90 bp | CTAGTCAACCTTGCCCATCCTAGAGGCAAGGCCTTCCCCAGAAGGAGATCTGGTTCAGTAGTACAGGTCTaGCTCATTAGGACCTGGCAA | + |
|
Preference number: 2 (lower is better) Translates to: LVNLAHPRGKAFPRRRSGSVVQV*LIRTWQ Trigger: TTGCCAGGTCCTAATGAGTCAGACCTGTACTACTGA...ACCAGATCTCCTTCTGGGGAAGGCCTTGCCTCTAGGATGGGCAAGGTTGACTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CCA 90 bp | ACTGTGCCCCATGCATCCCCAGGACTCACACATTCTGATGAAGTGGTTTCTAACGGCTTCAGAGTTTGTTaGATGAAGGGTAAGGACAGT | + |
|
Preference number: 2 (lower is better) Translates to: TVPHASPGLTHSDEVVSNGFRVC*MKGKDS Trigger: ACTGTCCTTACCCTTCATCCAACAAACTCTGAAGCC...GTTAGAAACCACTTCATCAGAATGTGTGAGTCCTGGGGATGCATGGGGCACAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CCA 90 bp | TCAACTGTGCCCCATGCATCCCCAGGACTCACACATTCTGATGAAGTGGTTTCTGGCTTCAGAGTTTGTTaGATGAAGGGTAAGGACAGT | + |
|
Preference number: 2 (lower is better) Translates to: STVPHASPGLTHSDEVVSGFRVC*MKGKDS Trigger: ACTGTCCTTACCCTTCATCCAACAAACTCTGAAGCC...AGAAACCACTTCATCAGAATGTGTGAGTCCTGGGGATGCATGGGGCACAGTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CCA 90 bp | GGTAATGGCTGGACTCTGTATTACACCAGGGTTGTGGAGAAATGGCCCACTCATCCCCAGAAGGAGATCTaGTTCTGTTTTACAAGATCC | + |
|
Preference number: 2 (lower is better) Translates to: GNGWTLYYTRVVEKWPTHPQKEI*FCFTRS Trigger: GGATCTTGTAAAACAGAACCAGATCTCCTTCTGGGG...ATGAGTGGGCCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR GCA 90 bp | GTGCTCTCTACTTTGTGGTCATGCTTTGGGACTATCCCTAGTCAACCTTGCCCATCTACTTTGTGGTCATaGTTTGGGACTATCCCTAGT | + |
|
Preference number: 2 (lower is better) Translates to: VLSTLWSCFGTIPSQPCPSTLWS*FGTIPS Trigger: ACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGA...TGGGCAAGGTTGACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR TCA 90 bp | TCAACTGTGCCCCATGCATCCCCAGGACTCACACATTCTGATGAAGTGGTTTCTGGCAGGTCATGCTACTaGGTTATGACAAATTATCAT | + |
|
Preference number: 2 (lower is better) Translates to: STVPHASPGLTHSDEVVSGRSCY*VMTNYH Trigger: ATGATAATTTGTCATAACTCAGTAGCATGACCTGCC...AGAAACCACTTCATCAGAATGTGTGAGTCCTGGGGATGCATGGGGCACAGTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR GCA 90 bp | GGTAATGGCTGGACTCTGTATTACACCAGGGTTGTGGAGAAATGGCCCACTCATTACACTTCTTTTTCTTaGAGTAAGCTAGAGACTGGC | + |
|
Preference number: 2 (lower is better) Translates to: GNGWTLYYTRVVEKWPTHYTSFS*SKLETG Trigger: GCCAGTCTCTAGCTTACTGCAAGAAAAAGAAGTGTA...ATGAGTGGGCCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CCA 90 bp | TTTCTAACCACGTGCTCTCTACTTTGTGGTCATGCTTTGGGACTATCCCTAGTCGGCTTCAGAGTTTGTTaGATGAAGGGTAAGGACAGT | + |
|
Preference number: 2 (lower is better) Translates to: FLTTCSLLCGHALGLSLVGFRVC*MKGKDS Trigger: ACTGTCCTTACCCTTCATCCAACAAACTCTGAAGCC...GACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CCA 90 bp | TTTCTAACCACGTGCTCTCTACTTTGTGGTCATGCTTTGGGACTATCCCTAGTCCCCCAGAAGGAGATCTaGTTCTGTTTTACAAGATCC | + |
|
Preference number: 2 (lower is better) Translates to: FLTTCSLLCGHALGLSLVPQKEI*FCFTRS Trigger: GGATCTTGTAAAACAGAACCAGATCTCCTTCTGGGG...GACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR TCA 90 bp | TGTGGAGCTCCATTCAGTTTCTTGATGTTAAGAAGCCAACCCAACCCACCAACTGGCAGGTCATGCTACTaGGTTATGACAAATTATCAT | + |
|
Preference number: 2 (lower is better) Translates to: CGAPFSFLMLRSQPNPPTGRSCY*VMTNYH Trigger: ATGATAATTTGTCATAACTCAGTAGCATGACCTGCC...AGTTGGTGGGTTGGGTTGGCTTCTTAACATCAAGAAACTGAATGGAGCTCCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR GCA 90 bp | GGACCTGGCAACGCCTTAGCATTTACAAATTTTAACTACCTTCTAGGGGCAGGTTACACTTCTTTTTCTTaGAGTAAGCTAGAGACTGGC | + |
|
Preference number: 2 (lower is better) Translates to: GPGNALAFTNFNYLLGAGYTSFS*SKLETG Trigger: GCCAGTCTCTAGCTTACTGCAAGAAAAAGAAGTGTA...ACCTGCCCCTAGAAGGTAGTTAAAATTTGTAAATGCTAAGGCGTTGCCAGGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR GCA 90 bp | ATTAGACAACTTCAGTTGGGTTCCACTGAGAAGCCAACCGAATCATTGAGATCTTACACTTCTTTTTCTTaGAGTAAGCTAGAGACTGGC | + |
|
Preference number: 2 (lower is better) Translates to: IRQLQLGSTEKPTESLRSYTSFS*SKLETG Trigger: GCCAGTCTCTAGCTTACTGCAAGAAAAAGAAGTGTA...AGATCTCAATGATTCGGTTGGCTTCTCAGTGGAACCCAACTGAAGTTGTCTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR TCA 90 bp | GCTACTTGTGTGTTCAGAAATTGTTTCCTCCTTCAAGCTATTTGCAGAAAGCTCGGCAGGTCATGCTACTaGGTTATGACAAATTATCAT | + |
|
Preference number: 2 (lower is better) Translates to: ATCVFRNCFLLQAICRKLGRSCY*VMTNYH Trigger: ATGATAATTTGTCATAACTCAGTAGCATGACCTGCC...GAGCTTTCTGCAAATAGCTTGAAGGAGGAAACAATTTCTGAACACACAAGTAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR TCA 90 bp | ATCCCCGACAGTCGTGTTAACACCAATGTCAATTATTTACATACTGTAAGCCCTGGCAGGTCATGCTACTaGGTTATGACAAATTATCAT | + |
|
Preference number: 2 (lower is better) Translates to: IPDSRVNTNVNYLHTVSPGRSCY*VMTNYH Trigger: ATGATAATTTGTCATAACTCAGTAGCATGACCTGCC...AGGGCTTACAGTATGTAAATAATTGACATTGGTGTTAACACGACTGTCGGGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR GCA 90 bp | GCTACTTGTGTGTTCAGAAATTGTTTCCTCCTTCAAGCTATTTGCAGAAAGCTCTACACTTCTTTTTCTTaGAGTAAGCTAGAGACTGGC | + |
|
Preference number: 2 (lower is better) Translates to: ATCVFRNCFLLQAICRKLYTSFS*SKLETG Trigger: GCCAGTCTCTAGCTTACTGCAAGAAAAAGAAGTGTA...GAGCTTTCTGCAAATAGCTTGAAGGAGGAAACAATTTCTGAACACACAAGTAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR CCA 72 bp | ATGGTAATGGCTGGACTCTGTATTACACCAGGGTTGTaGAGAAATGGCCCACTCATTGGGCTGTCTGTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: MVMAGLCITPGL*RNGPLIGLSVH Trigger: GTGCACAGACAGCCCAATGAGTGGGCCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CAA 90 bp | TCAACCTTGCCCATCCTAGAGGCAAGGCCTTCCCCAGAAGGAGATCTGGTTCTGTTGTGTGTTCAGAAATaGTTTCCTCCTTCAAGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: STLPILEARPSPEGDLVLLCVQK*FPPSSY Trigger: ATAGCTTGAAGGAGGAAACAATTTCTGAACACACAA...CAGAACCAGATCTCCTTCTGGGGAAGGCCTTGCCTCTAGGATGGGCAAGGTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CAA 90 bp | AGGAGAATGGTAATGGCTGGACTCTGTATTACACCAGGGTTGTGGAGAAATGGCATTAGACAACTTCAGTaGGGTTCCACTGAGAAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: RRMVMAGLCITPGLWRNGIRQLQ*GSTEKP Trigger: TGGCTTCTCAGTGGAACCCAACTGAAGTTGTCTAAT...GCCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACCATTCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR CCA 72 bp | GATGAAGTGGTTTCTAACCACGTGCTCTCTACTTTGTaGTCATGCTTTGGGACTATCCCTAGTCAACCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: DEVVSNHVLSTL*SCFGTIPSQPC Trigger: GCAAGGTTGACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAACCACTTCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR CCA 72 bp | TCCCATGTCAAAGTAACGCAGGAGAATGGTAATGGCTaGACTCTGTATTACACCAGGGTTGTGGAGAAATGG | + |
|
Preference number: 3 (lower is better) Translates to: SHVKVTQENGNG*TLYYTRVVEKW Trigger: CCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACCATTCTCCTGCGTTACTTTGACATGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR TCA 72 bp | TTCAGTTGGGTTCCACTGAGAAGCCAACCGAATCATTaGGATCTAGAGGTGTGGAGCTCCATTCAGTTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: FSWVPLRSQPNH*DLEVWSSIQFL Trigger: AAGAAACTGAATGGAGCTCCACACCTCTAGATCTCAATGATTCGGTTGGCTTCTCAGTGGAACCCAACTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR GCA 72 bp | GACTCACACATTCTGATGAAGTGGTTTCTAACCACGTaGTCTCTACTTTGTGGTCATGCTTTGGGACTATCC | + |
|
Preference number: 3 (lower is better) Translates to: DSHILMKWFLTT*SLLCGHALGLS Trigger: GGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAACCACTTCATCAGAATGTGTGAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR-3UTR CAA 90 bp | GTGCTCTCTACTTTGTGGTCATGCTTTGGGACTATCCCTAGTCAACCTTGCCCATTGTGTGTTCAGAAATaGTTTCCTCCTTCAAGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: VLSTLWSCFGTIPSQPCPLCVQK*FPPSSY Trigger: ATAGCTTGAAGGAGGAAACAATTTCTGAACACACAA...TGGGCAAGGTTGACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR GCA 90 bp | AGGAGAATGGTAATGGCTGGACTCTGTATTACACCAGGGTTGTGGAGAAATGGCAGAGGTGCCGGCCCCTaGTCCTCGGGCTTCTCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RRMVMAGLCITPGLWRNGRGAGP*SSGFSA Trigger: TGCCGAGAAGCCCGAGGAGCAGGGGCCGGCACCTCT...GCCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACCATTCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000204435.3 |
||
| CDS-3UTR GCA 90 bp | TCAACCTTGCCCATCCTAGAGGCAAGGCCTTCCCCAGAAGGAGATCTGGTTCTGCCTGAGCGAGTCTCATaGAACCCAAAACAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: STLPILEARPSPEGDLVLPERVS*NPKQLW Trigger: CCAGAGCTGTTTTGGGTTGCATGAGACTCGCTCAGG...CAGAACCAGATCTCCTTCTGGGGAAGGCCTTGCCTCTAGGATGGGCAAGGTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR GCA 90 bp | CTAGTCAACCTTGCCCATCCTAGAGGCAAGGCCTTCCCCAGAAGGAGATCTGGTCCTGAGCGAGTCTCATaGAACCCAAAACAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LVNLAHPRGKAFPRRRSGPERVS*NPKQLW Trigger: CCAGAGCTGTTTTGGGTTGCATGAGACTCGCTCAGG...ACCAGATCTCCTTCTGGGGAAGGCCTTGCCTCTAGGATGGGCAAGGTTGACTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR GCA 90 bp | TTTCTAACCACGTGCTCTCTACTTTGTGGTCATGCTTTGGGACTATCCCTAGTCCCTGAGCGAGTCTCATaGAACCCAAAACAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FLTTCSLLCGHALGLSLVPERVS*NPKQLW Trigger: CCAGAGCTGTTTTGGGTTGCATGAGACTCGCTCAGG...GACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR GCA 90 bp | GGACCTGGCAACGCCTTAGCATTTACAAATTTTAACTACCTTCTAGGGGCAGGTCCTGAGCGAGTCTCATaGAACCCAAAACAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GPGNALAFTNFNYLLGAGPERVS*NPKQLW Trigger: CCAGAGCTGTTTTGGGTTGCATGAGACTCGCTCAGG...ACCTGCCCCTAGAAGGTAGTTAAAATTTGTAAATGCTAAGGCGTTGCCAGGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR CAA 72 bp | AGGGAGGCGACACGGTGCTACTTGTGTGTTCAGAAATaGTTTCCTCCTTCAAGCTATTTGCAGAAAGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: REATRCYLCVQK*FPPSSYLQKAQ Trigger: CTGAGCTTTCTGCAAATAGCTTGAAGGAGGAAACAATTTCTGAACACACAAGTAGCACCGTGTCGCCTCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| 3UTR CAA 72 bp | CTTCAGTTGGGTTCCACTGAGAAGCCAACCGAATCATaGAGATCTAGAGGTGTGGAGCTCCATTCAGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LQLGSTEKPTES*RSRGVELHSVS Trigger: AGAAACTGAATGGAGCTCCACACCTCTAGATCTCAATGATTCGGTTGGCTTCTCAGTGGAACCCAACTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR CAA 90 bp | GGACCTGGCAACGCCTTAGCATTTACAAATTTTAACTACCTTCTAGGGGCAGGTAGTTTGCTGATCTGGTaGCTTTTCATCCTGTTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: GPGNALAFTNFNYLLGAGSLLIW*LFILFP Trigger: TGGAAACAGGATGAAAAGCAACCAGATCAGCAAACT...ACCTGCCCCTAGAAGGTAGTTAAAATTTGTAAATGCTAAGGCGTTGCCAGGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR CAA 90 bp | ATTAGACAACTTCAGTTGGGTTCCACTGAGAAGCCAACCGAATCATTGAGATCTAGTTTGCTGATCTGGTaGCTTTTCATCCTGTTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: IRQLQLGSTEKPTESLRSSLLIW*LFILFP Trigger: TGGAAACAGGATGAAAAGCAACCAGATCAGCAAACT...AGATCTCAATGATTCGGTTGGCTTCTCAGTGGAACCCAACTGAAGTTGTCTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR CAA 90 bp | GCTACTTGTGTGTTCAGAAATTGTTTCCTCCTTCAAGCTATTTGCAGAAAGCTCAGTTTGCTGATCTGGTaGCTTTTCATCCTGTTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: ATCVFRNCFLLQAICRKLSLLIW*LFILFP Trigger: TGGAAACAGGATGAAAAGCAACCAGATCAGCAAACT...GAGCTTTCTGCAAATAGCTTGAAGGAGGAAACAATTTCTGAACACACAAGTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||
| CDS-3UTR CAA 90 bp | CGGTGCTACTTGTGTGTTCAGAAATTGTTTCCTCCTTCAAGCTATTTGCAGAAAAGTTTGCTGATCTGGTaGCTTTTCATCCTGTTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: RCYLCVQKLFPPSSYLQKSLLIW*LFILFP Trigger: TGGAAACAGGATGAAAAGCAACCAGATCAGCAAACT...TTTCTGCAAATAGCTTGAAGGAGGAAACAATTTCTGAACACACAAGTAGCACCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000054080.15 ENSMUST00000081956.12 ENSMUST00000203164.3 ENSMUST00000204435.3 |
||