Pregenerated sensors for SIK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024042Ensembl transcript IDs: ENSMUST00000024839.6
Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTaGGACATCAGGTTTCGGCGCTGCCTCTTCCTGGCCTCAGGTAAC | + |
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Preference number: 1 (lower is better) Translates to: SKRYRMGHGAHGGPR*DIRFRRCLFLASGN Trigger: GTTACCTGAGGCCAGGAAGAGGCAGCGCCGAAACCTGATGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR CCA 90 bp | CACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTaGGGCCACTTCTTCCCTGACACCTCTACTCTGTACAGGAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: HGCCLGLPCPGRPVR*GHFFPDTSTLYRRW Trigger: CCACCTCCTGTACAGAGTAGAGGTGTCAGGGAAGAAGTGGCCCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 90 bp | GGAAGTCGCCCGGGAGGCAGAGAGACAGACGCGAGTCAGAAGGGTTaGCATCCCTGGTTCCTTCCAGAGGTGTTTGGATGGCACGGCTGT | + |
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Preference number: 1 (lower is better) Translates to: GSRPGGRETDASQKG*HPWFLPEVFGWHGC Trigger: ACAGCCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCTGACTCGCGTCTGTCTCTCTGCCTCCCGGGCGACTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR GCA 90 bp | CACGACAAGGCGGTCTTCTGGCTGACGGGAGACCCCGAGAATGCATaGCGTTTGTCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAAACC | + |
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Preference number: 1 (lower is better) Translates to: HDKAVFWLTGDPENA*RLSSPGLSLGYSET Trigger: GGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGACAAACGGCATGCATTCTCGGGGTCTCCCGTCAGCCAGAAGACCGCCTTGTCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 90 bp | AGCTGTGAACCCAAGCCTGAAACAACGCCAACCACTACACAGGCATaGGCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTC | + |
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Preference number: 1 (lower is better) Translates to: SCEPKPETTPTTTQA*ATVRAAPTSGMPQL Trigger: GAGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGCTCATGCCTGTGTAGTGGTTGGCGTTGTTTCAGGCTTGGGTTCACAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 90 bp | TGCCTTAGGATACTGAGTGCTTGCTTCCCTGATGCACACATCAGGTaGGTCGGCAGGAGGGACACTTTTTGGTTTGTTCTGTGGAGGGCA | + |
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Preference number: 1 (lower is better) Translates to: CLRILSACFPDAHIR*VGRRDTFWFVLWRA Trigger: TGCCCTCCACAGAACAAACCAAAAAGTGTCCCTCCTGCCGACTCACCTGATGTGTGCATCAGGGAAGCAAGCACTCAGTATCCTAAGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 90 bp | GAATGCATGCCGTTTGTCTTCCCCTGGGCTGAGCCTTGGCTACTCTaGAACCCACACAGAAAGCAGCGAGTTCACAGTTTCTGTCTAAAG | + |
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Preference number: 1 (lower is better) Translates to: ECMPFVFPWAEPWLL*NPHRKQRVHSFCLK Trigger: CTTTAGACAGAAACTGTGAACTCGCTGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGACAAACGGCATGCATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 90 bp | AGTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTaGTCTGTGGTATCCAGACAGGAACTATGGGAGATGAGGGCTGGC | + |
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Preference number: 1 (lower is better) Translates to: SKVLVDSDTQQCTGL*SVVSRQELWEMRAG Trigger: GCCAGCCCTCATCTCCCATAGTTCCTGTCTGGATACCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR GCA 90 bp | AAACCCACACAGAAAGCAGCGAGTTCACAGTTTCTGTCTAAAGCATaGGCGTTTCAGAAGTGGAGAGCTGTGAACCCAAGCCTGAAACAA | + |
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Preference number: 1 (lower is better) Translates to: KPTQKAASSQFLSKA*AFQKWRAVNPSLKQ Trigger: TTGTTTCAGGCTTGGGTTCACAGCTCTCCACTTCTGAAACGCGCATGCTTTAGACAGAAACTGTGAACTCGCTGCTTTCTGTGTGGGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACACCCCCACTTCAGGGATaGCCCAGCTCATCACGCCTC | + |
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Preference number: 2 (lower is better) Translates to: RVSGIGWATGPTEDHAGTPPLQG*PSSSRL Trigger: GAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGG...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR CCA 90 bp | GCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGGCCGCTCTCCCCCCGTCTAGAAAGTTCTTaGCTTTTGAGTCCGGAAACC | + |
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Preference number: 2 (lower is better) Translates to: APTSGMPQLITPRRPLSPRLESS*LLSPET Trigger: GGTTTCCGGACTCAAAAGCCAAGAACTTTCTAGACG...GGGGGAGAGCGGCCTCCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGC 61% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR CAA 90 bp | ACGCGAGTCAGAAGGGTTGACATCCCTGGTTCCTTCCAGAGGTGTTaGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGAC | + |
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Preference number: 2 (lower is better) Translates to: TRVRRVDIPGSFQRC*DGTAVAWAFPAQVD Trigger: GTCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCTGACTCGCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR CAA 90 bp | TGGAAGTCGCCCGGGAGGCAGAGAGACAGACGCGAGTCAGAAGGGTaGACATCCCTGGTTCCTTCCAGAGGTGTTTGGATGGCACGGCTG | + |
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Preference number: 2 (lower is better) Translates to: WKSPGRQRDRRESEG*TSLVPSRGVWMARL Trigger: CAGCCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCTGACTCGCGTCTGTCTCTCTGCCTCCCGGGCGACTTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR TCA 90 bp | GTTCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCCAAAAACCCCCAAGCTaGACCACGACAAGGCGGTCT | + |
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Preference number: 2 (lower is better) Translates to: VPSRGVWMARLLPGPSLPQKPPS*TTTRRS Trigger: AGACCGCCTTGTCGTGGTTCAGCTTGGGGGTTTTTG...GGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | CTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTACAGCCCCTTGGTATTaGACAATTCCCCCAAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: LPEVFGWHGCCLGLPCPGTAPWY*TIPPSQ Trigger: CTGACTTGGGGGAATTGTGCAATACCAAGGGGCTGT...ACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR CCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGGGCACGGCTGTTGCCTaGGCCTTCCCTGCCCAGGTA | + |
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Preference number: 2 (lower is better) Translates to: VKCLSILTHSSAQAFDLWGTAVA*AFPAQV Trigger: TACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCC...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | GCCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTGGGGCCACTTCTTCCCTGATACTCCGAAATTATTaGTTGGAAGAGTCAATCGGC | + |
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Preference number: 2 (lower is better) Translates to: AWAFPAQVDLSGGATSSLILRNY*LEESIG Trigger: GCCGATTGACTCTTCCAAGCAATAATTTCGGAGTAT...CAGGGAAGAAGTGGCCCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACATTTCTGTCTAAAGCATaGGCGTTTCAGAAGTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: RVSGIGWATGPTEDHAGTFLSKA*AFQKWR Trigger: TCTCCACTTCTGAAACGCGCATGCTTTAGACAGAAA...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGTGCCTGGGCCTTCCCTaGCCAGGTAGACCTGTCAGG | + |
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Preference number: 2 (lower is better) Translates to: VKCLSILTHSSAQAFDLWCLGLP*PGRPVR Trigger: CCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGCA...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGATCAGGTTTCGGCGCTaGCTCTTCCTGGCCTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: VKCLSILTHSSAQAFDLWIRFRR*LFLASG Trigger: ACCTGAGGCCAGGAAGAGGCAGCGCCGAAACCTGAT...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR TCA 90 bp | AGGCTTTTACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATTGTCTTCCCCTGGGCTaGGCCTTGGCTACTCTGAAA | + |
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Preference number: 2 (lower is better) Translates to: RLLPGKVPGQGQGSHNQDCLPLG*ALATLK Trigger: TTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGACA...ATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTAAAAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR GCA 90 bp | CCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGAATTGAGGTCACTCAGTaGAAGGAGAAAACAAAACAA | + |
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Preference number: 2 (lower is better) Translates to: PEVFGWHGCCLGLPCPGRIEVTQ*KEKTKQ Trigger: TTGTTTTGTTTTCTCCTTGCACTGAGTGACCTCAAT...TCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR CCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGACTCTGTACAGGAGGTaGGTAGCCTACAGGCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: VKCLSILTHSSAQAFDLWTLYRR*VAYRPF Trigger: GAAAGGCCTGTAGGCTACCCACCTCCTGTACAGAGT...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR CCA 72 bp | TCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTaGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: SFQRCLDGTAVA*AFPAQVDLSGG Trigger: CCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR GCA 72 bp | TGGTTCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTaGCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: WFLPEVFGWHGC*LGLPCPGRPVR Trigger: CCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAACCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR CCA 72 bp | GAAGGGTTGACATCCCTGGTTCCTTCCAGAGGTGTTTaGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: EGLTSLVPSRGV*MARLLPGPSLP Trigger: GGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR GCA 72 bp | CACGGAGGACCACGCTGGGACATCAGGTTTCGGCGCTaGCTCTTCCTGGCCTCAGGTAACTCGGTCAATCTT | + |
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Preference number: 3 (lower is better) Translates to: HGGPRWDIRFRR*LFLASGNSVNL Trigger: AAGATTGACCGAGTTACCTGAGGCCAGGAAGAGGCAGCGCCGAAACCTGATGTCCCAGCGTGGTCCTCCGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 72 bp | CCGGGAGGCAGAGAGACAGACGCGAGTCAGAAGGGTTaGCATCCCTGGTTCCTTCCAGAGGTGTTTGGATGG | + |
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Preference number: 3 (lower is better) Translates to: PGGRETDASQKG*HPWFLPEVFGW Trigger: CCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCTGACTCGCGTCTGTCTCTCTGCCTCCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR CAA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACATTTCCCTACTTATCATaGAGGTCACTCAGTGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: RVSGIGWATGPTEDHAGTFPYLS*RSLSAR Trigger: CCTTGCACTGAGTGACCTCAATGATAAGTAGGGAAA...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 72 bp | ACCCCGAGAATGCATGCCGTTTGTCTTCCCCTGGGCTaGGCCTTGGCTACTCTGAAACCCACACAGAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: TPRMHAVCLPLG*ALATLKPTQKA Trigger: TGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGACAAACGGCATGCATTCTCGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR CCA 72 bp | CACTTCTTCCCTGACACCTCTACTCTGTACAGGAGGTaGGTAGCCTACAGGCCTTTCACCACAAACATGGGG | + |
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Preference number: 3 (lower is better) Translates to: HFFPDTSTLYRR*VAYRPFTTNMG Trigger: CCCCATGTTTGTGGTGAAAGGCCTGTAGGCTACCCACCTCCTGTACAGAGTAGAGGTGTCAGGGAAGAAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR-3UTR CAA 90 bp | ATGAGGGCTGGCTGCCTTAGGATACTGAGTGCTTGCTTCCCTGATGCACACATCGAAAGTTCTTGGCTTTaGAGTCCGGAAACCATCTTC | + |
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Preference number: 3 (lower is better) Translates to: MRAGCLRILSACFPDAHIESSWL*SPETIF Trigger: GAAGATGGTTTCCGGACTCAAAAGCCAAGAACTTTC...GATGTGTGCATCAGGGAAGCAAGCACTCAGTATCCTAAGGCAGCCAGCCCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 72 bp | ATACTGAGTGCTTGCTTCCCTGATGCACACATCAGGTaGGTCGGCAGGAGGGACACTTTTTGGTTTGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: ILSACFPDAHIR*VGRRDTFWFVL Trigger: CAGAACAAACCAAAAAGTGTCCCTCCTGCCGACTCACCTGATGTGTGCATCAGGGAAGCAAGCACTCAGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR TCA 72 bp | CTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTaGTCTGTGGTATCCAGACAGGAACTATGGGAGATG | + |
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Preference number: 3 (lower is better) Translates to: LVDSDTQQCTGL*SVVSRQELWEM Trigger: CATCTCCCATAGTTCCTGTCTGGATACCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR GCA 72 bp | CAGAAAGCAGCGAGTTCACAGTTTCTGTCTAAAGCATaGGCGTTTCAGAAGTGGAGAGCTGTGAACCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: QKAASSQFLSKA*AFQKWRAVNPS Trigger: GCTTGGGTTCACAGCTCTCCACTTCTGAAACGCGCATGCTTTAGACAGAAACTGTGAACTCGCTGCTTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| 3UTR GCA 72 bp | GCAACTAGAAGACACAAAAACTGCCAGAAAGTAAAGTaGTTGTCGATTCTGACACACAGCAGTGCACAGGCC | + |
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Preference number: 3 (lower is better) Translates to: ATRRHKNCQKVK*LSILTHSSAQA Trigger: GGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTACTTTCTGGCAGTTTTTGTGTCTTCTAGTTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR TCA 90 bp | GCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGGCCGCTCTCCCCCGTGCCCAGACCTGCCTaGGTCTGGAGCACAGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: APTSGMPQLITPRRPLSPVPRPA*VWSTGV Trigger: CACCCCTGTGCTCCAGACTCAGGCAGGTCTGGGCAC...GGGGGAGAGCGGCCTCCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR TCA 90 bp | GCCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTGGGGCCACTTCTTCCCTGCTGGGGACAGCCTGGTaGGGCACTGTGGCAGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: AWAFPAQVDLSGGATSSLLGTAW*GTVAGA Trigger: GGCCCCTGCCACAGTGCCTCACCAGGCTGTCCCCAG...CAGGGAAGAAGTGGCCCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CCA 90 bp | GCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGGCCGCTCTCCCCCCCGGGCAGGGGTTCCTaGACCTCCTGTTCCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: APTSGMPQLITPRRPLSPPGRGS*TSCSSS Trigger: AGAGGAGGAACAGGAGGTCCAGGAACCCCTGCCCGG...GGGGGAGAGCGGCCTCCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGC 69% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CCA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACAGGGACCGGGGACAGCTaGGGGCCCTGCTGGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: RVSGIGWATGPTEDHAGTGTGDS*GPCWQP Trigger: TGGCTGCCAGCAGGGCCCCCAGCTGTCCCCGGTCCC...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR GCA 90 bp | GCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGGCCGCTCTCCCCCAAGGCAGGGTCATCCTaGTGCAGGAGAGTGGGGTCG | + |
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Preference number: 4 (lower is better) Translates to: APTSGMPQLITPRRPLSPKAGSS*CRRVGS Trigger: CGACCCCACTCTCCTGCAGCAGGATGACCCTGCCTT...GGGGGAGAGCGGCCTCCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CCA 90 bp | GCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGCGGAGGGGCTTCTGCTaGCCCTGGCCAGTGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ATVRAAPTSGMPQLITPRRRGFC*PWPVPE Trigger: CTCAGGCACTGGCCAGGGCCAGCAGAAGCCCCTCCG...CCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CCA 90 bp | CTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTGGAGCTGGGGCTGTCTaGTGGGTGCAGGGGTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LPEVFGWHGCCLGLPCPGGAGAV*WVQGWA Trigger: GGCCCACCCCTGCACCCACCAGACAGCCCCAGCTCC...ACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR TCA 90 bp | TTCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAAGGGGTGGGCCGGGATaGGGGCTGGGCGCTTCGATG | + |
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Preference number: 4 (lower is better) Translates to: FLPEVFGWHGCCLGLPCPRGGPG*GLGASM Trigger: CATCGAAGCGCCCAGCCCTCATCCCGGCCCACCCCT...TGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR TCA 90 bp | GCCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTGGGGCCACTTCTTCCCTGAGGGCGAGGCCAATCTaGCTGGAGAGCTGGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: AWAFPAQVDLSGGATSSLRARPI*LESWCP Trigger: TGGGCACCAGCTCTCCAGTCAGATTGGCCTCGCCCT...CAGGGAAGAAGTGGCCCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR GCA 90 bp | CTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTGACAGCTGGGGGCCCTaGTGGCAGCCAGATGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LPEVFGWHGCCLGLPCPGDSWGP*WQPDEA Trigger: CGCCTCATCTGGCTGCCAGCAGGGCCCCCAGCTGTC...ACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR GCA 90 bp | GCCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTGGGGCCACTTCTTCCCTGTGGGTATCCAGGAGATaGGCAGCAGACGCCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: AWAFPAQVDLSGGATSSLWVSRR*AADATG Trigger: CCCTGTGGCGTCTGCTGCGCATCTCCTGGATACCCA...CAGGGAAGAAGTGGCCCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CCA 90 bp | CTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTCCTGCTGCAGGAGAGTaGGGTCGGCCTGCATCCACC | + |
|
Preference number: 4 (lower is better) Translates to: LPEVFGWHGCCLGLPCPGPAAGE*GRPAST Trigger: GGTGGATGCAGGCCGACCCCACTCTCCTGCAGCAGG...ACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGGCCGCTCTCCCCCGCACTGATGTGCAAGTaGGTATCCAGGAGATGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: APTSGMPQLITPRRPLSPALMCK*VSRRCA Trigger: TGCGCATCTCCTGGATACCCACTTGCACATCAGTGC...GGGGGAGAGCGGCCTCCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACACTGTGGCAGCCCAGCTaGATCACAGCCTGGGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: RVSGIGWATGPTEDHAGTLWQPS*ITAWGQ Trigger: CTGTCCCCAGGCTGTGATCCAGCTGGGCTGCCACAG...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | GCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGGCCGCTCTCCCCCAGCGTCTCACAGTCTTaGGACATGAAGAAGGGGATG | + |
|
Preference number: 4 (lower is better) Translates to: APTSGMPQLITPRRPLSPSVSQS*DMKKGM Trigger: CATCCCCTTCTTCATGTCTCAAGACTGTGAGACGCT...GGGGGAGAGCGGCCTCCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | GTTCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCACGCCACAGGGGACATaGCAGCCTGGAGAAGGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VPSRGVWMARLLPGPSLPTPQGT*QPGEGV Trigger: CACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCGT...GGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGTCTGAGCTTCGGAGCTaGGGCTGTCTGGTGGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: ATVRAAPTSGMPQLITPRSELRS*GCLVGA Trigger: TGCACCCACCAGACAGCCCCAGCTCCGAAGCTCAGA...CCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | CCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGAGTTCGGACGGAGGACTaGCACACCTGGCGAGCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: PEVFGWHGCCLGLPCPGRVRTED*HTWRAN Trigger: GTTGGCTCGCCAGGTGTGCCAGTCCTCCGTCCGAAC...TCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTCATCACGCCTCGGAGTGGGGAGGGCCACTaGGCCAGCACTGATGTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ATVRAAPTSGMPQLITPRSGEGH*ASTDVQ Trigger: TTGCACATCAGTGCTGGCCCAGTGGCCCTCCCCACT...CCGAGGCGTGATGAGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | TCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAAACCCACACAGAAAGCAGCGAGGCCCTGGCCAGTGCCTaGGGGGACCGCACTGAACTC | + |
|
Preference number: 4 (lower is better) Translates to: SSPGLSLGYSETHTESSEALASA*GDRTEL Trigger: GAGTTCAGTGCGGTCCCCTCAGGCACTGGCCAGGGC...CTCGCTGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | TACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATGCCGACAGTGGCAGGGGCCCAGTaGGGAGGGCCACTGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: YQERSQAKGKVVITKMPTVAGAQ*GGPLGQ Trigger: CTGGCCCAGTGGCCCTCCCCACTGGGCCCCTGCCAC...TGTCGGCATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | CCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGAAGCTGGATCACAGCCTaGGGACAGCCTGGTGAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PEVFGWHGCCLGLPCPGRSWITA*GQPGEA Trigger: TGCCTCACCAGGCTGTCCCCAGGCTGTGATCCAGCT...TCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | TCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAAACCCACACAGAAAGCAGCGAGGCCTGCAGGACAGACTaGGCCAAGGCCTGGGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SSPGLSLGYSETHTESSEACRTD*AKAWGC Trigger: ACAGCCCCAGGCCTTGGCTCAGTCTGTCCTGCAGGC...CTCGCTGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACAAACTGGAGCAGCCTCTaGTGGTGCAGGACCTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RVSGIGWATGPTEDHAGTNWSSL*WCRTSS Trigger: TGAAGAGGTCCTGCACCAGCAGAGGCTGCTCCAGTT...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GCCTGGGCCTTCCCTGCCCAGGTAGACCTGTCAGGTGGGGCCACTTCTTCCCTGGTCCCAGGAACCCCTTaGTCCTCGCATTTTTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: AWAFPAQVDLSGGATSSLVPGTP*SSHFSS Trigger: TGAGGAAAAATGCGAGGACCAAGGGGTTCCTGGGAC...CAGGGAAGAAGTGGCCCCACCTGACAGGTCTACCTGGGCAGGGAAGGCCCAGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | TACACAGGCATGAGCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTTTGCAGGCCGGAGCTTaGGGCTGGGGTGTGGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: YTGMSNSTSCPHFRDAPALQAGA*GWGVEG Trigger: ACCTTCCACACCCCAGCCCCAAGCTCCGGCCTGCAA...AGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGCTCATGCCTGTGTA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | CCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGAGCGGCGGTAGAAGAGTaGTGCTGTAACTGGAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: PEVFGWHGCCLGLPCPGRAAVEE*CCNWSS Trigger: GCTGCTCCAGTTACAGCACCACTCTTCTACCGCCGC...TCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GTTCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCGGGTGTTGGCAGCAGTaGAATTCCAGACACGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VPSRGVWMARLLPGPSLPGCWQQ*NSRHEE Trigger: CTCCTCGTGTCTGGAATTCCACTGCTGCCAACACCC...GGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| 3UTR CAA 72 bp | AGAAGGGTTGACATCCCTGGTTCCTTCCAGAGGTGTTaGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: RRVDIPGSFQRC*DGTAVAWAFPA Trigger: GGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | ATGAGGGCTGGCTGCCTTAGGATACTGAGTGCTTGCTTCCCTGATGCACACATCGCAGGGTCATCCTGCTaGAGGAGAGTGGGGTCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: MRAGCLRILSACFPDAHIAGSSC*RRVGSA Trigger: GGCCGACCCCACTCTCCTGCAGCAGGATGACCCTGC...GATGTGTGCATCAGGGAAGCAAGCACTCAGTATCCTAAGGCAGCCAGCCCTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | ATGAGGGCTGGCTGCCTTAGGATACTGAGTGCTTGCTTCCCTGATGCACACATCGGGTGGCCAGGCCACTaGCAAGCCCTGCAGGACCTT | + |
|
Preference number: 4 (lower is better) Translates to: MRAGCLRILSACFPDAHIGWPGH*QALQDL Trigger: AAGGTCCTGCAGGGCTTGGCAGTGGCCTGGCCACCC...GATGTGTGCATCAGGGAAGCAAGCACTCAGTATCCTAAGGCAGCCAGCCCTCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | TACACAGGCATGAGCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTCTTCAAGTAGGCTCCTaGCCTCCCGATTGCTGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: YTGMSNSTSCPHFRDAPALQVGS*PPDCWS Trigger: CGACCAGCAATCGGGAGGGCAGGAGCCTACTTGAAG...AGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGCTCATGCCTGTGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | AGGCTTTTACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATTGGTGGGTGCAGGGGTaGGCCGGGATGAGGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RLLPGKVPGQGQGSHNQDWWVQG*AGMRAG Trigger: CCCAGCCCTCATCCCGGCCCACCCCTGCACCCACCA...ATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTAAAAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | TCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAAACCCACACAGAAAGCAGCGAGTGTCCAGCAGACTGCTaGGGGAGATGGATCGGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: SSPGLSLGYSETHTESSECPADC*GRWIGA Trigger: GGCACCGATCCATCTCCCCCAGCAGTCTGCTGGACA...CTCGCTGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | AGGCTTTTACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATCCAGCAGCCCTGGGGTaGCCAGGCCACTGCCAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: RLLPGKVPGQGQGSHNQDPAALG*PGHCQA Trigger: GGCTTGGCAGTGGCCTGGCCACCCCAGGGCTGCTGG...ATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTAAAAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | TCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAAACCCACACAGAAAGCAGCGAGCGAGGCCAATCTGACTaGAGAGCTGGTGCCCAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SSPGLSLGYSETHTESSERGQSD*RAGAQQ Trigger: CTGCTGGGCACCAGCTCTCCAGTCAGATTGGCCTCG...CTCGCTGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | TTCCTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCACACGGGAGAATTTCTTaGGGAACCTCCAGACTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FLPEVFGWHGCCLGLPCPHGRIS*GTSRLL Trigger: CAGCAGTCTGGAGGTTCCTCAAGAAATTCTCCCGTG...TGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | TCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAAACCCACACAGAAAGCAGCGAGCCTTCAGCCCCTGAGTaGGAGAGGTATCAGACGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SSPGLSLGYSETHTESSEPSAPE*ERYQTL Trigger: GAGCGTCTGATACCTCTCTCACTCAGGGGCTGAAGG...CTCGCTGCTTTCTGTGTGGGTTTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | TACACAGGCATGAGCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTTGCAGGACCTTCACTTaGAGAGAAGGGGAGGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: YTGMSNSTSCPHFRDAPACRTFT*REGEAA Trigger: AGCTGCCTCCCCTTCTCTGCAAGTGAAGGTCCTGCA...AGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGCTCATGCCTGTGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGCCTGGTGAGGCACTGTaGCAGGGGCCCAGTGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VKCLSILTHSSAQAFDLWPGEAL*QGPSGE Trigger: CTCCCCACTGGGCCCCTGCCACAGTGCCTCACCAGG...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| 3UTR CAA 72 bp | TTCTGGCTGACGGGAGACCCCGAGAATGCATGCCGTTaGTCTTCCCCTGGGCTGAGCCTTGGCTACTCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: FWLTGDPENACR*SSPGLSLGYSE Trigger: TTCAGAGTAGCCAAGGCTCAGCCCAGGGGAAGACAAACGGCATGCATTCTCGGGGTCTCCCGTCAGCCAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGGGCAGCTGTCGGAGCTaGTCCCTTCCGAGGGACTCG | + |
|
Preference number: 4 (lower is better) Translates to: VKCLSILTHSSAQAFDLWGSCRS*SLPRDS Trigger: CGAGTCCCTCGGAAGGGACCAGCTCCGACAGCTGCC...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | ATGAGGGCTGGCTGCCTTAGGATACTGAGTGCTTGCTTCCCTGATGCACACATCGCCGGAGCTTGGGGCTaGGGTGTGGAAGGTACTCAT | + |
|
Preference number: 4 (lower is better) Translates to: MRAGCLRILSACFPDAHIAGAWG*GVEGTH Trigger: ATGAGTACCTTCCACACCCCAGCCCCAAGCTCCGGC...GATGTGTGCATCAGGGAAGCAAGCACTCAGTATCCTAAGGCAGCCAGCCCTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | GGCTTTTACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATGTGCCGAGGGCCTGCATaGTCCCTAGCACCTGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: GFYQERSQAKGKVVITKMCRGPA*SLAPVR Trigger: ACGAACAGGTGCTAGGGATCATGCAGGCCCTCGGCA...CATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTAAAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | GCATGCGCGTTTCAGAAGTGGAGAGCTGTGAACCCAAGCCTGAAACAACGCCAAGCCACTGCCAAGCCCTaGAGGACCTTCACTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: ACAFQKWRAVNPSLKQRQATAKP*RTFTCR Trigger: TCTGCAAGTGAAGGTCCTGCAGGGCTTGGCAGTGGC...TTGGCGTTGTTTCAGGCTTGGGTTCACAGCTCTCCACTTCTGAAACGCGCATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | AGAGTAAGCGGTATAGGATGGGCCACGGGGCCCACGGAGGACCACGCTGGGACACACTCAAGTGCCCGTTaGAAGTCAGATAATCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: RVSGIGWATGPTEDHAGTHSSAR*KSDNQT Trigger: TGTTTGATTATCTGACTTCCAACGGGCACTTGAGTG...TGTCCCAGCGTGGTCCTCCGTGGGCCCCGTGGCCCATCCTATACCGCTTACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | GCATGCGCGTTTCAGAAGTGGAGAGCTGTGAACCCAAGCCTGAAACAACGCCAAGCGGTAGAAGAGTGGTaGTGTAACTGGAGCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ACAFQKWRAVNPSLKQRQAVEEW*CNWSSL Trigger: GAGGCTGCTCCAGTTACAGCACCACTCTTCTACCGC...TTGGCGTTGTTTCAGGCTTGGGTTCACAGCTCTCCACTTCTGAAACGCGCATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGCTGTGTCCAGCAGACTaGTGGGGGAGATGGATCGGT | + |
|
Preference number: 4 (lower is better) Translates to: VKCLSILTHSSAQAFDLWLCPAD*WGRWIG Trigger: ACCGATCCATCTCCCCCAGCAGTCTGCTGGACACAG...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGGAGGTAAGACGGCTGTaGCCAGACCTGCCTGAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VKCLSILTHSSAQAFDLWEVRRL*PDLPES Trigger: AGACTCAGGCAGGTCTGGGCACAGCCGTCTTACCTC...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | TACACAGGCATGAGCAACAGTACGAGCTGCCCCCACTTCAGGGATGCCCCAGCTCAAAATCTGCTAGCTTaGTATCCATGTTGCTGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: YTGMSNSTSCPHFRDAPAQNLLA*YPCCCP Trigger: TGGACAGCAACATGGATATCAAGCTAGCAGATTTTG...AGCTGGGGCATCCCTGAAGTGGGGGCAGCTCGTACTGTTGCTCATGCCTGTGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGTGGAGCAGCCTCTGCTaGTGCAGGACCTCTTCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: VKCLSILTHSSAQAFDLWWSSLC*CRTSSS Trigger: ACTTGAAGAGGTCCTGCACCAGCAGAGGCTGCTCCA...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | AAAGAAACTTTACAAACACTGACCTATACTTATGATCCTCCTGGAAAGCAAGCCAGAGTGGGGTCGGCCTaGATCCACCGGTGCTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: KETLQTLTYTYDPPGKQARVGSA*IHRCWR Trigger: CCGCCAGCACCGGTGGATGCAGGCCGACCCCACTCT...GGCTTGCTTTCCAGGAGGATCATAAGTATAGGTCAGTGTTTGTAAAGTTTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR TCA 90 bp | GGCTTTTACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATGGGGAATAATAAGGGCTaGAGTGAGCTGTGGAGATCA | + |
|
Preference number: 4 (lower is better) Translates to: GFYQERSQAKGKVVITKMGNNKG*SELWRS Trigger: TGATCTCCACAGCTCACTTCAGCCCTTATTATTCCC...CATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTAAAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | AAAGAAACTTTACAAACACTGACCTATACTTATGATCCTCCTGGAAAGCAAGCCGGGGACATGCCAGCCTaGAGAAGGGGTGTTGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KETLQTLTYTYDPPGKQAGDMPA*RRGVGS Trigger: GCTGCCAACACCCCTTCTCCAGGCTGGCATGTCCCC...GGCTTGCTTTCCAGGAGGATCATAAGTATAGGTCAGTGTTTGTAAAGTTTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR CCA 90 bp | AAAGAAACTTTACAAACACTGACCTATACTTATGATCCTCCTGGAAAGCAAGCCCTCACAGTCCCCCTGTaGCAGCCCAGCTGGATCACA | + |
|
Preference number: 4 (lower is better) Translates to: KETLQTLTYTYDPPGKQALTVPL*QPSWIT Trigger: TGTGATCCAGCTGGGCTGCCACAGGGGGACTGTGAG...GGCTTGCTTTCCAGGAGGATCATAAGTATAGGTCAGTGTTTGTAAAGTTTCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS-3UTR GCA 90 bp | ATGAGGGCTGGCTGCCTTAGGATACTGAGTGCTTGCTTCCCTGATGCACACATCGTCAATTATTTTTATTaGAACCTGCGTTTTGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: MRAGCLRILSACFPDAHIVNYFY*NLRFGD Trigger: GTCACCAAAACGCAGGTTGCAATAAAAATAATTGAC...GATGTGTGCATCAGGGAAGCAAGCACTCAGTATCCTAAGGCAGCCAGCCCTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
||
| CDS TCA 90 bp | GGCACTGTGGCAGGGGCCCAGTGGGGAGGGCCACTGGGCCAGCACTaGTGTGCAAGTGGGTATCCAGGAGATGCGCAGCAGACGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: GTVAGAQWGGPLGQH*CASGYPGDAQQTPQ Trigger: CTGTGGCGTCTGCTGCGCATCTCCTGGATACCCACTTGCACATCAGTGCTGGCCCAGTGGCCCTCCCCACTGGGCCCCTGCCACAGTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CCA 90 bp | CAGCCTGGTGAGGCACTGTGGCAGGGGCCCAGTGGGGAGGGCCACTaGGCCAGCACTGATGTGCAAGTGGGTATCCAGGAGATGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QPGEALWQGPSGEGH*ASTDVQVGIQEMRS Trigger: GCTGCGCATCTCCTGGATACCCACTTGCACATCAGTGCTGGCCCAGTGGCCCTCCCCACTGGGCCCCTGCCACAGTGCCTCACCAGGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS GCA 90 bp | AGGGCCACTGGGCCAGCACTGATGTGCAAGTGGGTATCCAGGAGATaGGCAGCAGACGCCACAGGGGACATGCCAGCCTGGAGAAGGGGT | + |
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Preference number: 5 (lower is better) Translates to: RATGPALMCKWVSRR*AADATGDMPAWRRG Trigger: ACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCGTCTGCTGCGCATCTCCTGGATACCCACTTGCACATCAGTGCTGGCCCAGTGGCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CCA 90 bp | CGCAGCAGACGCCACAGGGGACATGCCAGCCTGGAGAAGGGGTGTTaGCAGCAGTGGAATTCCAGACACGAGGAGGCTGTCACAGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: RSRRHRGHASLEKGC*QQWNSRHEEAVTGS Trigger: GCTCCCTGTGACAGCCTCCTCGTGTCTGGAATTCCACTGCTGCCAACACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCGTCTGCTGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS GCA 90 bp | GAGGCGGCGGCGGTAGAAGAGTGGTGCTGTAACTGGAGCAGCCTCTaGTGGTGCAGGACCTCTTCAAGTAGGCTCCTGCCCTCCCGATTG | + |
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Preference number: 5 (lower is better) Translates to: EAAAVEEWCCNWSSL*WCRTSSSRLLPSRL Trigger: CAATCGGGAGGGCAGGAGCCTACTTGAAGAGGTCCTGCACCAGCAGAGGCTGCTCCAGTTACAGCACCACTCTTCTACCGCCGCCGCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CAA 90 bp | CCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGACTGCAGGACCTTCACTaGCAGAGAAGGGGAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PEVFGWHGCCLGLPCPGRLQDLH*QRRGGS Trigger: GCTGCCTCCCCTTCTCTGCAAGTGAAGGTCCTGCAG...TCTACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CCA 90 bp | GTATCCAGGAGATGCGCAGCAGACGCCACAGGGGACATGCCAGCCTaGAGAAGGGGTGTTGGCAGCAGTGGAATTCCAGACACGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: VSRRCAADATGDMPA*RRGVGSSGIPDTRR Trigger: CCTCCTCGTGTCTGGAATTCCACTGCTGCCAACACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCGTCTGCTGCGCATCTCCTGGATAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS TCA 90 bp | GGAAAGGGTCACACGGGAGAATTTCTTGAGGAACCTCCAGACTGCTaGGGTCTGAGCTTCGGAGCTGGGGCTGTCTGGTGGGTGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: GKGHTGEFLEEPPDC*GLSFGAGAVWWVQG Trigger: CCCCTGCACCCACCAGACAGCCCCAGCTCCGAAGCTCAGACCTCAGCAGTCTGGAGGTTCCTCAAGAAATTCTCCCGTGTGACCCTTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CAA 90 bp | CTTCCAGAGGTGTTTGGATGGCACGGCTGTTGCCTGGGCCTTCCCTGCCCAGGTAGCTTGATATCCATGTaGCTGTCCAGGAGCAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: LPEVFGWHGCCLGLPCPGSLISM*LSRSRF Trigger: GAACCTGCTCCTGGACAGCAACATGGATATCAAGCT...ACCTGGGCAGGGAAGGCCCAGGCAACAGCCGTGCCATCCAAACACCTCTGGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CAA 90 bp | GAGTCAGAAGGGTTGACATCCCTGGTTCCTTCCAGAGGTGTTTGGATGGCACGGCCTGGAGAAGGGGTGTaGGCAGCAGTGGAATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ESEGLTSLVPSRGVWMARPGEGV*AAVEFQ Trigger: CTGGAATTCCACTGCTGCCAACACCCCTTCTCCAGG...CCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCTGACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CAA 90 bp | GAGTCAGAAGGGTTGACATCCCTGGTTCCTTCCAGAGGTGTTTGGATGGCACGGATTATGCAAGGAGGGTaGAGCGGGGAGAAATGGGTG | + |
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Preference number: 5 (lower is better) Translates to: ESEGLTSLVPSRGVWMARIMQGG*SGEKWV Trigger: CACCCATTTCTCCCCGCTCAACCCTCCTTGCATAAT...CCGTGCCATCCAAACACCTCTGGAAGGAACCAGGGATGTCAACCCTTCTGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CAA 90 bp | AGGCTTTTACCAGGAAAGGTCCCAGGCCAAGGGCAAGGTAGTCATAACCAAGATAGTCCCAGGAACCCCTaGGTCCTCGCATTTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RLLPGKVPGQGQGSHNQDSPRNP*VLAFFL Trigger: GAGGAAAAATGCGAGGACCAAGGGGTTCCTGGGACT...ATCTTGGTTATGACTACCTTGCCCTTGGCCTGGGACCTTTCCTGGTAAAAGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS-3UTR CAA 90 bp | GTAAAGTGCTTGTCGATTCTGACACACAGCAGTGCACAGGCCTTTGATCTGTGGCAGCGTCTCACAGTCTaGAGACATGAAGAAGGGGAT | + |
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Preference number: 5 (lower is better) Translates to: VKCLSILTHSSAQAFDLWQRLTV*RHEEGD Trigger: ATCCCCTTCTTCATGTCTCAAGACTGTGAGACGCTG...CCACAGATCAAAGGCCTGTGCACTGCTGTGTGTCAGAATCGACAAGCACTTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CCA 72 bp | CCGATTGCTGGTCGTGCAGCCTTGCAGGCCGGAGCTTaGGGCTGGGGTGTGGAAGGTACTCATCCCTCCCCG | + |
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Preference number: 6 (lower is better) Translates to: PIAGRAALQAGA*GWGVEGTHPSP Trigger: CGGGGAGGGATGAGTACCTTCCACACCCCAGCCCCAAGCTCCGGCCTGCAAGGCTGCACGACCAGCAATCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS GCA 72 bp | GCCTCTGCTGGTGCAGGACCTCTTCAAGTAGGCTCCTaGCCTCCCGATTGCTGGTCGTGCAGCCTTGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: ASAGAGPLQVGS*PPDCWSCSLAG Trigger: GCCTGCAAGGCTGCACGACCAGCAATCGGGAGGGCAGGAGCCTACTTGAAGAGGTCCTGCACCAGCAGAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CCA 72 bp | CGCCACAGGGGACATGCCAGCCTGGAGAAGGGGTGTTaGCAGCAGTGGAATTCCAGACACGAGGAGGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: RHRGHASLEKGC*QQWNSRHEEAV Trigger: GACAGCCTCCTCGTGTCTGGAATTCCACTGCTGCCAACACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CCA 72 bp | AGATGCGCAGCAGACGCCACAGGGGACATGCCAGCCTaGAGAAGGGGTGTTGGCAGCAGTGGAATTCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RCAADATGDMPA*RRGVGSSGIPD Trigger: GTCTGGAATTCCACTGCTGCCAACACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCGTCTGCTGCGCATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS GCA 72 bp | GCGGTAGAAGAGTGGTGCTGTAACTGGAGCAGCCTCTaGTGGTGCAGGACCTCTTCAAGTAGGCTCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: AVEEWCCNWSSL*WCRTSSSRLLP Trigger: GGGCAGGAGCCTACTTGAAGAGGTCCTGCACCAGCAGAGGCTGCTCCAGTTACAGCACCACTCTTCTACCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CAA 90 bp | GAGGGACTCGCCGTGGCAGAGGAGGAGACAATTATGCAAGGAGGGTaGAGCGGGGAGAAATGGGTGGAGACTTCAGCCAATGTGTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: EGLAVAEEETIMQGG*SGEKWVETSANVCL Trigger: GAGGCACACATTGGCTGAAGTCTCCACCCATTTCTCCCCGCTCAACCCTCCTTGCATAATTGTCTCCTCCTCTGCCACGGCGAGTCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS TCA 72 bp | CACACGGGAGAATTTCTTGAGGAACCTCCAGACTGCTaGGGTCTGAGCTTCGGAGCTGGGGCTGTCTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: HTGEFLEEPPDC*GLSFGAGAVWW Trigger: CCACCAGACAGCCCCAGCTCCGAAGCTCAGACCTCAGCAGTCTGGAGGTTCCTCAAGAAATTCTCCCGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS TCA 72 bp | AGAGAGGGCCGGAAAGGGTCACACGGGAGAATTTCTTaGGGAACCTCCAGACTGCTGAGGTCTGAGCTTCGG | + |
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Preference number: 6 (lower is better) Translates to: REGRKGSHGRIS*GTSRLLRSELR Trigger: CCGAAGCTCAGACCTCAGCAGTCTGGAGGTTCCTCAAGAAATTCTCCCGTGTGACCCTTTCCGGCCCTCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS CAA 72 bp | GCCGTGGCAGAGGAGGAGACAATTATGCAAGGAGGGTaGAGCGGGGAGAAATGGGTGGAGACTTCAGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: AVAEEETIMQGG*SGEKWVETSAN Trigger: ATTGGCTGAAGTCTCCACCCATTTCTCCCCGCTCAACCCTCCTTGCATAATTGTCTCCTCCTCTGCCACGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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| CDS TCA 72 bp | CCACTGCAGTTGGTATCCAGGGGGAATAATAAGGGCTaGAGTGAGCTGTGGAGATCACAGTCTATCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: PLQLVSRGNNKG*SELWRSQSISA Trigger: GGCTGAGATAGACTGTGATCTCCACAGCTCACTTCAGCCCTTATTATTCCCCCTGGATACCAACTGCAGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024839.6 |
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