Pregenerated sensors for SIGMAR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036078Ensembl transcript IDs: ENSMUST00000059354.15, ENSMUST00000071561.7
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGTCTGAATATGAGTTCCAGCGAGTAGAGAGATGGATGTGGTCCTaGCGCGCTCCTGTCCATCCACAGATCTTCCTTCAGGCCTGGCTG | + |
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Preference number: 1 (lower is better) Translates to: LSEYEFQRVERWMWS*RAPVHPQIFLQAWL Trigger: CAGCCAGGCCTGAAGGAAGATCTGTGGATGGACAGGAGCGCGGCAGGACCACATCCATCTCTCTACTCGCTGGAACTCATATTCAGACAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR CCA 90 bp | ACGCTGCTGTCTGAATATGAGTTCCAGCGAGTAGAGAGATGGATGTaGTCCTGCCGCGCTCCTGTCCATCCACAGATCTTCCTTCAGGCC | + |
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Preference number: 1 (lower is better) Translates to: TLLSEYEFQRVERWM*SCRAPVHPQIFLQA Trigger: GGCCTGAAGGAAGATCTGTGGATGGACAGGAGCGCGGCAGGACCACATCCATCTCTCTACTCGCTGGAACTCATATTCAGACAGCAGCGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR TCA 90 bp | ATGAGGCATCAGAGTGAGGTAGTGTGTAACATCTACCTCAACCCTTaGTCCCAGAGCCCTGAATGCCAGCAGGAGGCTCTAGGAAAGCCT | + |
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Preference number: 1 (lower is better) Translates to: MRHQSEVVCNIYLNP*SQSPECQQEALGKP Trigger: AGGCTTTCCTAGAGCCTCCTGCTGGCATTCAGGGCTCTGGGATCAAGGGTTGAGGTAGATGTTACACACTACCTCACTCTGATGCCTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR GCA 90 bp | ATGATCTTACAGTACATACAAGTCTTAGCATCTCTGTGTCTCATTTaGTTCCCAAGAGCTGTGTCTGGATGTACAAGTATGTATGTCCTT | + |
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Preference number: 1 (lower is better) Translates to: MILQYIQVLASLCLI*FPRAVSGCTSMYVL Trigger: AAGGACATACATACTTGTACATCCAGACACAGCTCTTGGGAAGCAAATGAGACACAGAGATGCTAAGACTTGTATGTACTGTAAGATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR CCA 90 bp | GGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTGGCCCTGGGGCACTCAGCGAGTAGAGAGATaGATGTGGTCCTGCCGCGCT | + |
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Preference number: 2 (lower is better) Translates to: GPRLTSPGPLLGNWPWGTQRVER*MWSCRA Trigger: AGCGCGGCAGGACCACATCCATCTCTCTACTCGCTG...AGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR GCA 90 bp | TCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTGGCCCTGGGTCCCAGAGCCCTGAATaGCAGCAGGAGGCTCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: SLDPGLLLQVLSLGTGPGSQSPE*QQEALG Trigger: TCCTAGAGCCTCCTGCTGGCATTCAGGGCTCTGGGA...CCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | GGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGATCTACCTCAACCCTTaGTCCCAGAGCCCTGAATGC | + |
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Preference number: 2 (lower is better) Translates to: GMGWLLGPRLTSPGPLLGIYLNP*SQSPEC Trigger: GCATTCAGGGCTCTGGGATCAAGGGTTGAGGTAGAT...CCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGGTGAAGGGGACCTCCGAAGGGCAGCTCCTCTTTCCCTTCACCAGAGATTCCCAGAGCCCTGAATaGCAGCAGGAGGCTCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: LQVKGTSEGQLLFPFTRDSQSPE*QQEALG Trigger: TCCTAGAGCCTCCTGCTGGCATTCAGGGCTCTGGGA...ATCTCTGGTGAAGGGAAAGAGGAGCTGCCCTTCGGAGGTCCCCTTCACCTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | TGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGGCTCTAGGAAAGCCTaGGTCAGTGAGTCAAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: WNGVAPWTPAYFSRSSPWGSRKA*VSESSL Trigger: CAAGCTTGACTCACTGACTCAGGCTTTCCTAGAGCC...CCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | CTGCAGGTGAAGGGGACCTCCGAAGGGCAGCTCCTCTTTCCCTTCACCAGAGATATGTGTGTTCAAACATaGCTGGCCCCCTGGAGTATA | + |
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Preference number: 2 (lower is better) Translates to: LQVKGTSEGQLLFPFTRDMCVQT*LAPWSI Trigger: TATACTCCAGGGGGCCAGTCATGTTTGAACACACAT...ATCTCTGGTGAAGGGAAAGAGGAGCTGCCCTTCGGAGGTCCCCTTCACCTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | AAGGGTCTCCGTAGTGGAGGACCTCCCTTCCCTTTAGCATCCTCTACATGCCTCGGCTCTAGGAAAGCCTaGGTCAGTGAGTCAAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: KGLRSGGPPFPLASSTCLGSRKA*VSESSL Trigger: CAAGCTTGACTCACTGACTCAGGCTTTCCTAGAGCC...GAGGCATGTAGAGGATGCTAAAGGGAAGGGAGGTCCTCCACTACGGAGACCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | CAGGGGAGTGGAATGGAGATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGTTGATCCCAGAGCCCTaGATGCCAGCAGGAGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: QGSGMEIRHMVRKGMKGRLIPEP*MPAGGS Trigger: AGAGCCTCCTGCTGGCATTCAGGGCTCTGGGATCAA...CCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATCTCCATTCCACTCCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR GCA 90 bp | TTTGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTTCTCTGTGTCTCATTTaGTTCCCAAGAGCTGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: FGMGWLLGPRLTSPGPLLSLCLI*FPRAVS Trigger: AGACACAGCTCTTGGGAAGCAAATGAGACACAGAGA...AAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | TTTGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTAGTGAGTCAAGCTTGTaGTGTGTGTTCAAACATGAC | + |
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Preference number: 2 (lower is better) Translates to: FGMGWLLGPRLTSPGPLLSESSL*CVFKHD Trigger: GTCATGTTTGAACACACATCACAAGCTTGACTCACT...AAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | GTGTGCACACACACACTAAAGGCTTCTTTTGGAATGGGGTGGCTCCTTGGACCCCTTTCTGGGTGGATGTaGGTGCATGATCTTACAGTA | + |
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Preference number: 2 (lower is better) Translates to: VCTHTLKASFGMGWLLGPLSGWM*VHDLTV Trigger: TACTGTAAGATCATGCACTCACATCCACCCAGAAAG...GGGTCCAAGGAGCCACCCCATTCCAAAAGAAGCCTTTAGTGTGTGTGTGCACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR CCA 90 bp | TTTCTGGGTGGATGTGAGTGCATGATCTTACAGTACATACAAGTCTTAGCATCTCAGCGAGTAGAGAGATaGATGTGGTCCTGCCGCGCT | + |
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Preference number: 2 (lower is better) Translates to: FLGGCECMILQYIQVLASQRVER*MWSCRA Trigger: AGCGCGGCAGGACCACATCCATCTCTCTACTCGCTG...AGATGCTAAGACTTGTATGTACTGTAAGATCATGCACTCACATCCACCCAGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | AGAGAGAGACAAGAAGACAGAGATTGCAACAGATATGTCTGGAAACTGATAGGGCTTTCTGGGTGGATGTaGGTGCATGATCTTACAGTA | + |
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Preference number: 2 (lower is better) Translates to: RERQEDRDCNRYVWKLIGLSGWM*VHDLTV Trigger: TACTGTAAGATCATGCACTCACATCCACCCAGAAAG...CCCTATCAGTTTCCAGACATATCTGTTGCAATCTCTGTCTTCTTGTCTCTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR TCA 90 bp | AGAGAGAGACAAGAAGACAGAGATTGCAACAGATATGTCTGGAAACTGATAGGGGTGGATGTGAGTGCATaGTCTTACAGTACATACAAG | + |
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Preference number: 2 (lower is better) Translates to: RERQEDRDCNRYVWKLIGVDVSA*SYSTYK Trigger: CTTGTATGTACTGTAAGATCATGCACTCACATCCAC...CCCTATCAGTTTCCAGACATATCTGTTGCAATCTCTGTCTTCTTGTCTCTCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR CAA 90 bp | CATGATCTTACAGTACATACAAGTCTTAGCATCTCTGTGTCTCATTaGCTTCCCAAGAGCTGTGTCTGGATGTACAAGTATGTATGTCCT | + |
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Preference number: 2 (lower is better) Translates to: HDLTVHTSLSISVSH*LPKSCVWMYKYVCP Trigger: AGGACATACATACTTGTACATCCAGACACAGCTCTTGGGAAGCAAATGAGACACAGAGATGCTAAGACTTGTATGTACTGTAAGATCATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR CCA 90 bp | TCTCATTTGCTTCCCAAGAGCTGTGTCTGGATGTACAAGTATGTATGTCCTTCCTACTTAATATCTGCATaGTATACGCTGCTGTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: SHLLPKSCVWMYKYVCPSYLISA*YTLLSE Trigger: TTCAGACAGCAGCGTATACCATGCAGATATTAAGTA...GGAAGGACATACATACTTGTACATCCAGACACAGCTCTTGGGAAGCAAATGAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR CCA 90 bp | AGAGAGAGACAAGAAGACAGAGATTGCAACAGATATGTCTGGAAACTGATAGGGTACTTAATATCTGCATaGTATACGCTGCTGTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: RERQEDRDCNRYVWKLIGYLISA*YTLLSE Trigger: TTCAGACAGCAGCGTATACCATGCAGATATTAAGTA...CCCTATCAGTTTCCAGACATATCTGTTGCAATCTCTGTCTTCTTGTCTCTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR CCA 72 bp | CCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTaGCCCTGGGGCACTAGCCAGCTTTCCCATTCTAAC | + |
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Preference number: 3 (lower is better) Translates to: PRLTSPGPLLGN*PWGTSQLSHSN Trigger: GTTAGAATGGGAAAGCTGGCTAGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR CAA 90 bp | TGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGATCTCTGTGTCTCATTaGCTTCCCAAGAGCTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: WNGVAPWTPAYFSRSSPWISVSH*LPKSCV Trigger: GACACAGCTCTTGGGAAGCAAATGAGACACAGAGAT...CCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR CCA 72 bp | CTGCTGTCTGAATATGAGTTCCAGCGAGTAGAGAGATaGATGTGGTCCTGCCGCGCTCCTGTCCATCCACAG | + |
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Preference number: 3 (lower is better) Translates to: LLSEYEFQRVER*MWSCRAPVHPQ Trigger: CTGTGGATGGACAGGAGCGCGGCAGGACCACATCCATCTCTCTACTCGCTGGAACTCATATTCAGACAGCAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR-3UTR CAA 90 bp | CTGCAGGTGAAGGGGACCTCCGAAGGGCAGCTCCTCTTTCCCTTCACCAGAGATATCTCTGTGTCTCATTaGCTTCCCAAGAGCTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: LQVKGTSEGQLLFPFTRDISVSH*LPKSCV Trigger: GACACAGCTCTTGGGAAGCAAATGAGACACAGAGAT...ATCTCTGGTGAAGGGAAAGAGGAGCTGCCCTTCGGAGGTCCCCTTCACCTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR GCA 72 bp | TATGAGTTCCAGCGAGTAGAGAGATGGATGTGGTCCTaGCGCGCTCCTGTCCATCCACAGATCTTCCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: YEFQRVERWMWS*RAPVHPQIFLQ Trigger: CTGAAGGAAGATCTGTGGATGGACAGGAGCGCGGCAGGACCACATCCATCTCTCTACTCGCTGGAACTCATA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR CCA 72 bp | TCTGAATATGAGTTCCAGCGAGTAGAGAGATGGATGTaGTCCTGCCGCGCTCCTGTCCATCCACAGATCTTC | + |
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Preference number: 3 (lower is better) Translates to: SEYEFQRVERWM*SCRAPVHPQIF Trigger: GAAGATCTGTGGATGGACAGGAGCGCGGCAGGACCACATCCATCTCTCTACTCGCTGGAACTCATATTCAGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR GCA 72 bp | AGATTGCAACAGATATGTCTGGAAACTGATAGGGTGTaGACACACACACTAAAGGCTTCTTTTGGAATGGGG | + |
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Preference number: 3 (lower is better) Translates to: RLQQICLETDRV*THTLKASFGMG Trigger: CCCCATTCCAAAAGAAGCCTTTAGTGTGTGTGTGCACACCCTATCAGTTTCCAGACATATCTGTTGCAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR GCA 72 bp | CAGTACATACAAGTCTTAGCATCTCTGTGTCTCATTTaGTTCCCAAGAGCTGTGTCTGGATGTACAAGTATG | + |
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Preference number: 3 (lower is better) Translates to: QYIQVLASLCLI*FPRAVSGCTSM Trigger: CATACTTGTACATCCAGACACAGCTCTTGGGAAGCAAATGAGACACAGAGATGCTAAGACTTGTATGTACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR GCA 90 bp | GGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTGGCCCTGGGGCACTAGCACGTGGCCTGGGTaGAGCCTCCGCAGCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: GPRLTSPGPLLGNWPWGTSTWPG*SLRSST Trigger: CGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCT...AGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR CCA 90 bp | TGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGCGGCAGCACGTGGCCTaGGTGCAGCCTCCGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: WNGVAPWTPAYFSRSSPWRQHVA*VQPPQL Trigger: GAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCG...CCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR GCA 90 bp | TGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGAGCACGTGGCCTGGGTaGAGCCTCCGCAGCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: WNGVAPWTPAYFSRSSPWSTWPG*SLRSST Trigger: CGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCT...CCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR CCA 90 bp | GGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTGGCCCTGGGGCACTCGTGCAGAATACACATaGCGCCCATCCAGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: GPRLTSPGPLLGNWPWGTRAEYT*RPSSRP Trigger: CGGGCGGCTGGATGGGCGCCATGTGTATTCTGCACG...AGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR CCA 90 bp | CTGCAGGTGAAGGGGACCTCCGAAGGGCAGCTCCTCTTTCCCTTCACCAGAGATTCATCCGGCAGCACGTaGCCTGGGTGCAGCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: LQVKGTSEGQLLFPFTRDSSGST*PGCSLR Trigger: GCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGA...ATCTCTGGTGAAGGGAAAGAGGAGCTGCCCTTCGGAGGTCCCCTTCACCTGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| 3UTR CAA 72 bp | TCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTaGGGAACTGGCCCTGGGGCACTAGCCAGCTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: SLDPGLLLQVLS*GTGPGALASFP Trigger: GGGAAAGCTGGCTAGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR TCA 90 bp | GGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTGGCCCTGGGGCACTGGTAGTCCTGGGTGCTaGAGAAAGTGTCGGCTAGTG | + |
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Preference number: 4 (lower is better) Translates to: GPRLTSPGPLLGNWPWGTGSPGC*RKCRLV Trigger: CACTAGCCGACACTTTCTTCAGCACCCAGGACTACC...AGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR GCA 90 bp | AAGGGTCTCCGTAGTGGAGGACCTCCCTTCCCTTTAGCATCCTCTACATGCCTCGGGAGCCCAGGGCGGTaGCGAAGAGCAGCACGTACT | + |
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Preference number: 4 (lower is better) Translates to: KGLRSGGPPFPLASSTCLGSPGR*RRAART Trigger: AGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCC...GAGGCATGTAGAGGATGCTAAAGGGAAGGGAGGTCCTCCACTACGGAGACCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR CCA 90 bp | GTGTGCACACACACACTAAAGGCTTCTTTTGGAATGGGGTGGCTCCTTGGACCCTCTCCCGAATGGCCATaGGAGCCCAGGGCGGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: VCTHTLKASFGMGWLLGPSPEWP*EPRAVP Trigger: CGGCACCGCCCTGGGCTCCCATGGCCATTCGGGAGA...GGGTCCAAGGAGCCACCCCATTCCAAAAGAAGCCTTTAGTGTGTGTGTGCACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
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| CDS-3UTR CCA 90 bp | GATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGGCATCATAGCTGCAGGTCGTCCCGAATGGCCATaGGAGCCCAGGGCGGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: DKAYGEERDEGKGIIAAGRPEWP*EPRAVP Trigger: CGGCACCGCCCTGGGCTCCCATGGCCATTCGGGACG...ACCTGCAGCTATGATGCCCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
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| CDS-3UTR CCA 90 bp | GTGTGCACACACACACTAAAGGCTTCTTTTGGAATGGGGTGGCTCCTTGGACCCCGTGCAGAATACACATaGCGCCCATCCAGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: VCTHTLKASFGMGWLLGPRAEYT*RPSSRP Trigger: CGGGCGGCTGGATGGGCGCCATGTGTATTCTGCACG...GGGTCCAAGGAGCCACCCCATTCCAAAAGAAGCCTTTAGTGTGTGTGTGCACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR CCA 90 bp | GGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGCCCTCTTTCCATTGGTaGAAGGTGCCAGAGATGATG | + |
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Preference number: 4 (lower is better) Translates to: GMGWLLGPRLTSPGPLLGPSFHW*KVPEMM Trigger: CATCATCTCTGGCACCTTCCACCAATGGAAAGAGGG...CCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
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| CDS-3UTR CCA 90 bp | GGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGAACTGGCCCTGGGGCACTAGACCTCACTTTTCGTaGTGCCCTCTTTCCATTGGT | + |
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Preference number: 4 (lower is better) Translates to: GPRLTSPGPLLGNWPWGTRPHFS*CPLSIG Trigger: ACCAATGGAAAGAGGGCACCACGAAAAGTGAGGTCT...AGTGCCCCAGGGCCAGTTCCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
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| CDS-3UTR TCA 90 bp | TTTGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGTAGTCCTGGGTGCTaGAGAAAGTGTCGGCTAGTG | + |
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Preference number: 4 (lower is better) Translates to: FGMGWLLGPRLTSPGPLLGSPGC*RKCRLV Trigger: CACTAGCCGACACTTTCTTCAGCACCCAGGACTACC...AAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR GCA 90 bp | GTAGAGAGATGGATGTGGTCCTGCCGCGCTCCTGTCCATCCACAGATCTTCCTTTCAGACAGCGAGGCGTaGAGAATACACATGGCGCCC | + |
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Preference number: 4 (lower is better) Translates to: VERWMWSCRAPVHPQIFLSDSEA*RIHMAP Trigger: GGGCGCCATGTGTATTCTGCACGCCTCGCTGTCTGA...AAGGAAGATCTGTGGATGGACAGGAGCGCGGCAGGACCACATCCATCTCTCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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| CDS-3UTR GCA 90 bp | GGGGAGTGGAATGGAGATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGGCCCACTCCAGAGCCGTTaGTTCTCCAGGCCCGTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: GEWNGDKAYGEERDEGKGPLQSR*FSRPVY Trigger: GTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGG...GCCCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATCTCCATTCCACTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR GCA 90 bp | GGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTGGGTACTGTCGAGCAAGCTaGGCTATTTCTTCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: GMGWLLGPRLTSPGPLLGYCRAS*AISSLE Trigger: CTCTAGAGAAGAAATAGCGCAGCTTGCTCGACAGTA...CCCAAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CCA 90 bp | TGTAGAGGACCCTTTCTGGGTGGATGTGAGTGCATGATCTTACAGTACATACAACGGCAGCACGTGGCCTaGGTGCAGCCTCCGCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: CRGPFLGGCECMILQYIQRQHVA*VQPPQL Trigger: GAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCG...TTGTATGTACTGTAAGATCATGCACTCACATCCACCCAGAAAGGGTCCTCTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CCA 90 bp | GTGTGCACACACACACTAAAGGCTTCTTTTGGAATGGGGTGGCTCCTTGGACCCCACCATCCACGTGTTTaGTCCCCACTCCAGAGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: VCTHTLKASFGMGWLLGPHHPRV*SPLQSR Trigger: ACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTG...GGGTCCAAGGAGCCACCCCATTCCAAAAGAAGCCTTTAGTGTGTGTGTGCACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR GCA 90 bp | CTTCCCAAGAGCTGTGTCTGGATGTACAAGTATGTATGTCCTTCCTCATACAGCAATCAGGGTGATCCATaGCCACCGCCGTCCCGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: LPKSCVWMYKYVCPSSYSNQGDP*PPPSRG Trigger: GCCGCGGGACGGCGGTGGGCATGGATCACCCTGATT...GCTGTATGAGGAAGGACATACATACTTGTACATCCAGACACAGCTCTTGGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CCA 90 bp | GTGTGCACACACACACTAAAGGCTTCTTTTGGAATGGGGTGGCTCCTTGGACCCGAGAAGGCAAGCTCATaGTCCAGCCCCGCATACTGT | + |
|
Preference number: 4 (lower is better) Translates to: VCTHTLKASFGMGWLLGPEKASS*SSPAYC Trigger: ACAGTATGCGGGGCTGGACCATGAGCTTGCCTTCTC...GGGTCCAAGGAGCCACCCCATTCCAAAAGAAGCCTTTAGTGTGTGTGTGCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CCA 90 bp | GGGGAGTGGAATGGAGATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGGCGAGAAGGCAAGCTCATaGTCCAGCCCCGCATACTGT | + |
|
Preference number: 4 (lower is better) Translates to: GEWNGDKAYGEERDEGKGEKASS*SSPAYC Trigger: ACAGTATGCGGGGCTGGACCATGAGCTTGCCTTCTC...GCCCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATCTCCATTCCACTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CCA 90 bp | AAGGGTCTCCGTAGTGGAGGACCTCCCTTCCCTTTAGCATCCTCTACATGCCTCGTGCCCTCTTTCCATTaGTGGAAGGTGCCAGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: KGLRSGGPPFPLASSTCLVPSFH*WKVPEM Trigger: CATCTCTGGCACCTTCCACCAATGGAAAGAGGGCAC...GAGGCATGTAGAGGATGCTAAAGGGAAGGGAGGTCCTCCACTACGGAGACCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS-3UTR CCA 90 bp | CAGGGGAGTGGAATGGAGATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGCACCATCCACGTGTTTaGTCCCCACTCCAGAGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: QGSGMEIRHMVRKGMKGRHHPRV*SPLQSR Trigger: ACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTG...CCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATCTCCATTCCACTCCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR TCA 90 bp | GGGACCTCCGAAGGGCAGCTCCTCTTTCCCTTCACCAGAGATTACTACAGGAATGGAAGGTGCCAGAGATaGTGGTGTCAGAAATCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GTSEGQLLFPFTRDYYRNGRCQR*WCQKSQ Trigger: CTGAGATTTCTGACACCATCATCTCTGGCACCTTCC...ATTCCTGTAGTAATCTCTGGTGAAGGGAAAGAGGAGCTGCCCTTCGGAGGTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS-3UTR GCA 90 bp | TTTGGAATGGGGTGGCTCCTTGGACCCCGGCTTACTTCTCCAGGTCCTCTCCTTTACTGTCGAGCAAGCTaGGCTATTTCTTCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: FGMGWLLGPRLTSPGPLLYCRAS*AISSLE Trigger: CTCTAGAGAAGAAATAGCGCAGCTTGCTCGACAGTA...AAGGAGAGGACCTGGAGAAGTAAGCCGGGGTCCAAGGAGCCACCCCATTCCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR GCA 90 bp | GGGACCTCCGAAGGGCAGCTCCTCTTTCCCTTCACCAGAGATTACTACAGGAATGGCCTGGATCAGCACTaGGATAATAGTCAGAATCAG | + |
|
Preference number: 4 (lower is better) Translates to: GTSEGQLLFPFTRDYYRNGLDQH*DNSQNQ Trigger: CTGATTCTGACTATTATCGCAGTGCTGATCCAGGCC...ATTCCTGTAGTAATCTCTGGTGAAGGGAAAGAGGAGCTGCCCTTCGGAGGTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR GCA 90 bp | CAGGGGAGTGGAATGGAGATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGCCTCACTTTTCGTGGTaGCCTCTTTCCATTGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QGSGMEIRHMVRKGMKGRPHFSW*PLSIGG Trigger: TCCACCAATGGAAAGAGGGCACCACGAAAAGTGAGG...CCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATCTCCATTCCACTCCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS-3UTR GCA 90 bp | TCTCATTTGCTTCCCAAGAGCTGTGTCTGGATGTACAAGTATGTATGTCCTTCCCCACTCCAGAGCCGTTaGTTCTCCAGGCCCGTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SHLLPKSCVWMYKYVCPSPLQSR*FSRPVY Trigger: GTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGG...GGAAGGACATACATACTTGTACATCCAGACACAGCTCTTGGGAAGCAAATGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR GCA 90 bp | CAGGGGAGTGGAATGGAGATAAGGCATATGGTGAGGAAAGGGATGAAGGGAAGGGGCCTGGATCAGCACTaGGATAATAGTCAGAATCAG | + |
|
Preference number: 4 (lower is better) Translates to: QGSGMEIRHMVRKGMKGRGLDQH*DNSQNQ Trigger: CTGATTCTGACTATTATCGCAGTGCTGATCCAGGCC...CCTTCCCTTCATCCCTTTCCTCACCATATGCCTTATCTCCATTCCACTCCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CCA 90 bp | CTTCCCAAGAGCTGTGTCTGGATGTACAAGTATGTATGTCCTTCCTCATACAGCTACAACTGTCTCTCCTaGGTAGAAGACCTCACTTTT | + |
|
Preference number: 4 (lower is better) Translates to: LPKSCVWMYKYVCPSSYSYNCLS*VEDLTF Trigger: AAAAGTGAGGTCTTCTACCCAGGAGAGACAGTTGTA...GCTGTATGAGGAAGGACATACATACTTGTACATCCAGACACAGCTCTTGGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| 3UTR CAA 72 bp | ACAGTACATACAAGTCTTAGCATCTCTGTGTCTCATTaGCTTCCCAAGAGCTGTGTCTGGATGTACAAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: TVHTSLSISVSH*LPKSCVWMYKY Trigger: ATACTTGTACATCCAGACACAGCTCTTGGGAAGCAAATGAGACACAGAGATGCTAAGACTTGTATGTACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 90 bp | ATACACATGGCGCCCATCCAGCCGCCCGCGTTCACAAATACCCACTaGAGCTCCTCATCCGGCAGCACGTGGCCTGGGTGCAGCCTCCGC | + |
|
Preference number: 5 (lower is better) Translates to: IHMAPIQPPAFTNTH*SSSSGSTWPGCSLR Trigger: GCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGTGAACGCGGGCGGCTGGATGGGCGCCATGTGTAT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 90 bp | CCCGCGTTCACAAATACCCACTGCAGCTCCTCATCCGGCAGCACGTaGCCTGGGTGCAGCCTCCGCAGCTCCACGATCAGCCGAGAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: PAFTNTHCSSSSGST*PGCSLRSSTISREK Trigger: CTTCTCTCGGCTGATCGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGTGAACGCGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 90 bp | ACAAATACCCACTGCAGCTCCTCATCCGGCAGCACGTGGCCTGGGTaGAGCCTCCGCAGCTCCACGATCAGCCGAGAGAAGGCAAGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: TNTHCSSSSGSTWPG*SLRSSTISREKASS Trigger: TGAGCTTGCCTTCTCTCGGCTGATCGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 90 bp | TCTCAGCCCAGTATCGTCCCGAATGGCCATGGGAGCCCAGGGCGGTaGCGAAGAGCAGCACGTACTCAGACAGCGAGGCGTGCAGAATAC | + |
|
Preference number: 5 (lower is better) Translates to: SQPSIVPNGHGSPGR*RRAARTQTARRAEY Trigger: GTATTCTGCACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTCGGGACGATACTGGGCTGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS CCA 90 bp | GTTCACAAATACCCACTGCAGCTCCTCATCCGGCAGCACGTGGCCTaGGTGCAGCCTCCGCAGCTCCACGATCAGCCGAGAGAAGGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: VHKYPLQLLIRQHVA*VQPPQLHDQPREGK Trigger: CTTGCCTTCTCTCGGCTGATCGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGTGAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 90 bp | CGTGTACAACTGTCTCTCCCGAATGGCCATGGGAGCCCAGGGCGGTaGCGAAGAGCAGCACGTACTCAGACAGCGAGGCGTGCAGAATAC | + |
|
Preference number: 5 (lower is better) Translates to: RVQLSLPNGHGSPGR*RRAARTQTARRAEY Trigger: GTATTCTGCACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTCGGGAGAGACAGTTGTACACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS GCA 90 bp | GCCGTACTCCACCATCCACGTGTTTGGTCCCCACTCCAGAGCCGTTaGTTCTCCAGGCCCGTGTACAACTGTCTCTCCCGAATGGCCATG | + |
|
Preference number: 5 (lower is better) Translates to: AVLHHPRVWSPLQSR*FSRPVYNCLSRMAM Trigger: CATGGCCATTCGGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTGGAGTACGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS CCA 90 bp | CGAAGAGCAGCACGTACTCAGACAGCGAGGCGTGCAGAATACACATaGCGCCCATCCAGCCGCCCGCGTTCACAAATACCCACTGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: RRAARTQTARRAEYT*RPSSRPRSQIPTAA Trigger: AGCTGCAGTGGGTATTTGTGAACGCGGGCGGCTGGATGGGCGCCATGTGTATTCTGCACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 90 bp | GGTAGACGGAATAACACCCCGGCCGTACTCCACCATCCACGTGTTTaGTCCCCACTCCAGAGCCGTTGCTTCTCCAGGCCCGTGTACAAC | + |
|
Preference number: 5 (lower is better) Translates to: GRRNNTPAVLHHPRV*SPLQSRCFSRPVYN Trigger: GTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTGGAGTACGGCCGGGGTGTTATTCCGTCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 90 bp | GCCGTACTCCACCATCCACGTGTTTGGTCCCCACTCCAGAGCCGTTaGTTCTCCAGGCCCGTGTACAACTGTCTCTCCTGGGTAGAAGAC | + |
|
Preference number: 5 (lower is better) Translates to: AVLHHPRVWSPLQSR*FSRPVYNCLSWVED Trigger: GTCTTCTACCCAGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTGGAGTACGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS CCA 90 bp | TGCAGCCTCCGCAGCTCCACGATCAGCCGAGAGAAGGCAAGCTCATaGTCCAGCCCCGCATACTGTCGAGCAAGCTGCGCTATTTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: CSLRSSTISREKASS*SSPAYCRASCAISS Trigger: AGAAGAAATAGCGCAGCTTGCTCGACAGTATGCGGGGCTGGACCATGAGCTTGCCTTCTCTCGGCTGATCGTGGAGCTGCGGAGGCTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS-3UTR CAA 90 bp | TTTCTGGGTGGATGTGAGTGCATGATCTTACAGTACATACAAGTCTTAGCATCTGGTGCCCTCTTTCCATaGGTGGAAGGTGCCAGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: FLGGCECMILQYIQVLASGALFP*VEGARD Trigger: ATCTCTGGCACCTTCCACCAATGGAAAGAGGGCACC...AGATGCTAAGACTTGTATGTACTGTAAGATCATGCACTCACATCCACCCAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS GCA 72 bp | GCGCCCATCCAGCCGCCCGCGTTCACAAATACCCACTaGAGCTCCTCATCCGGCAGCACGTGGCCTGGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: APIQPPAFTNTH*SSSSGSTWPGC Trigger: GCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGTGAACGCGGGCGGCTGGATGGGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 72 bp | TACCCACTGCAGCTCCTCATCCGGCAGCACGTGGCCTaGGTGCAGCCTCCGCAGCTCCACGATCAGCCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: YPLQLLIRQHVA*VQPPQLHDQPR Trigger: TCTCGGCTGATCGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 72 bp | GTGCCGAAGAGCAGCACGTACTCAGACAGCGAGGCGTaGAGAATACACATGGCGCCCATCCAGCCGCCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: VPKSSTYSDSEA*RIHMAPIQPPA Trigger: CGCGGGCGGCTGGATGGGCGCCATGTGTATTCTGCACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS GCA 72 bp | CTGTCTCTCCCGAATGGCCATGGGAGCCCAGGGCGGTaGCGAAGAGCAGCACGTACTCAGACAGCGAGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: LSLPNGHGSPGR*RRAARTQTARR Trigger: ACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTCGGGAGAGACAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS CCA 72 bp | GCTTCTCCAGGCCCGTGTACAACTGTCTCTCCCGAATaGCCATGGGAGCCCAGGGCGGTGCCGAAGAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ASPGPCTTVSPE*PWEPRAVPKSS Trigger: GCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTCGGGAGAGACAGTTGTACACGGGCCTGGAGAAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS GCA 72 bp | AGTATCGTCCCGAATGGCCATGGGAGCCCAGGGCGGTaGCGAAGAGCAGCACGTACTCAGACAGCGAGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: SIVPNGHGSPGR*RRAARTQTARR Trigger: ACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTCGGGACGATACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS CCA 72 bp | ACAAATACCCACTGCAGCTCCTCATCCGGCAGCACGTaGCCTGGGTGCAGCCTCCGCAGCTCCACGATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: TNTHCSSSSGST*PGCSLRSSTIS Trigger: GCTGATCGTGGAGCTGCGGAGGCTGCACCCAGGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 72 bp | CGCAGCTCCACGATCAGCCGAGAGAAGGCAAGCTCATaGTCCAGCCCCGCATACTGTCGAGCAAGCTGCGCT | + |
|
Preference number: 6 (lower is better) Translates to: RSSTISREKASS*SSPAYCRASCA Trigger: AGCGCAGCTTGCTCGACAGTATGCGGGGCTGGACCATGAGCTTGCCTTCTCTCGGCTGATCGTGGAGCTGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 72 bp | GCACGTACTCAGACAGCGAGGCGTGCAGAATACACATaGCGCCCATCCAGCCGCCCGCGTTCACAAATACCC | + |
|
Preference number: 6 (lower is better) Translates to: ARTQTARRAEYT*RPSSRPRSQIP Trigger: GGGTATTTGTGAACGCGGGCGGCTGGATGGGCGCCATGTGTATTCTGCACGCCTCGCTGTCTGAGTACGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 72 bp | AATAACACCCCGGCCGTACTCCACCATCCACGTGTTTaGTCCCCACTCCAGAGCCGTTGCTTCTCCAGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: NNTPAVLHHPRV*SPLQSRCFSRP Trigger: GGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTGGAGTACGGCCGGGGTGTTATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CAA 72 bp | CCACCATCCACGTGTTTGGTCCCCACTCCAGAGCCGTaGCTTCTCCAGGCCCGTGTACAACTGTCTCTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: PPSTCLVPTPEP*LLQARVQLSLP Trigger: CGGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS CAA 90 bp | GGCCGTACTCCACCATCCACGTGTTTGGTCCCCACTCCAGAGCCGTaGCTTCTCCAGGCCCGTGTACAACTGTCTCTCCCGAATGGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: GRTPPSTCLVPTPEP*LLQARVQLSLPNGH Trigger: ATGGCCATTCGGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTGGAGTACGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS GCA 72 bp | CACCATCCACGTGTTTGGTCCCCACTCCAGAGCCGTTaGTTCTCCAGGCCCGTGTACAACTGTCTCTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: HHPRVWSPLQSR*FSRPVYNCLSW Trigger: CCAGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
||
| CDS GCA 72 bp | CACCATCCACGTGTTTGGTCCCCACTCCAGAGCCGTTaGTTCTCCAGGCCCGTGTACAACTGTCTCTCCCGA | + |
|
Preference number: 6 (lower is better) Translates to: HHPRVWSPLQSR*FSRPVYNCLSR Trigger: TCGGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071561.7 |
||
| CDS GCA 72 bp | AGTGCCCAGCCACAACCAGGCGGCCTGGATCAGCACTaGGATAATAGTCAGAATCAGGGTGATCCATGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: SAQPQPGGLDQH*DNSQNQGDPCP Trigger: TGGGCATGGATCACCCTGATTCTGACTATTATCGCAGTGCTGATCCAGGCCGCCTGGTTGTGGCTGGGCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CAA 90 bp | CTGTCGAGCAAGCTGCGCTATTTCTTCTCTAGAGAAGACGAAGTTTaGAGTGCCCAGCCACAACCAGGCGGCCTGGATCAGCACTGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: LSSKLRYFFSREDEV*SAQPQPGGLDQHCD Trigger: ATCGCAGTGCTGATCCAGGCCGCCTGGTTGTGGCTGGGCACTCAAAACTTCGTCTTCTCTAGAGAAGAAATAGCGCAGCTTGCTCGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
||
| CDS CCA 72 bp | CAACTGTCTCTCCTGGGTAGAAGACCTCACTTTTCGTaGTGCCCTCTTTCCATTGGTGGAAGGTGCCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: QLSLLGRRPHFS*CPLSIGGRCQR Trigger: TCTCTGGCACCTTCCACCAATGGAAAGAGGGCACCACGAAAAGTGAGGTCTTCTACCCAGGAGAGACAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059354.15 |
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| CDS CAA 72 bp | AAGCTGCGCTATTTCTTCTCTAGAGAAGACGAAGTTTaGAGTGCCCAGCCACAACCAGGCGGCCTGGATCAG | + |
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Preference number: 6 (lower is better) Translates to: KLRYFFSREDEV*SAQPQPGGLDQ Trigger: CTGATCCAGGCCGCCTGGTTGTGGCTGGGCACTCAAAACTTCGTCTTCTCTAGAGAAGAAATAGCGCAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059354.15 ENSMUST00000071561.7 |
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