Pregenerated sensors for SIGLECE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030474Ensembl transcript IDs: ENSMUST00000032667.10, ENSMUST00000206421.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAAGGAATGGCTCTGAAGCCCTGTGTATCACATGTCAACCTAGGTaGCTCTTTCCTTCTCCAGAGCCAGCCTCCTGGGGCCACCATGCT | + |
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Preference number: 1 (lower is better) Translates to: RRNGSEALCITCQPR*LFPSPEPASWGHHA Trigger: AGCATGGTGGCCCCAGGAGGCTGGCTCTGGAGAAGGAAAGAGTCACCTAGGTTGACATGTGATACACAGGGCTTCAGAGCCATTCCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR-3UTR CCA 90 bp | ACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGGCAGCACAGGGGCATaGGCAGCACAGAACGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: TSLIPALGKKSSRAVWSAGSTGA*AAQNAC Trigger: ACAGGCGTTCTGTGCTGCCCATGCCCCTGTGCTGCC...TGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR-3UTR CCA 90 bp | TGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCACAATAGCAGTTGTGTaGACAGGGCAGCACAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: WWCTSLIPALGKKSSRAVTIAVV*TGQHRG Trigger: GCCCCTGTGCTGCCCTGTCCACACAACTGCTATTGT...GACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR-3UTR TCA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAACAGAAGGAATGGCTCTaGAGCCCTGTGTATCACATG | + |
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Preference number: 2 (lower is better) Translates to: AEQVLGQPRLHRETLSWKQKEWL*SPVYHM Trigger: CATGTGATACACAGGGCTTCAGAGCCATTCCTTCTG...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR-3UTR TCA 90 bp | ACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAACATGTCAACCTAGGTaGCTCTTTCCTTCTCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: TSLIPALGKKSSRAVWSATCQPR*LFPSPE Trigger: CTCTGGAGAAGGAAAGAGTCACCTAGGTTGACATGT...TGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR-3UTR TCA 90 bp | TGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCAAAAGGTCAAGCTTATaGTTCCCAGGGCACAATAGC | + |
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Preference number: 2 (lower is better) Translates to: WWCTSLIPALGKKSSRAVKRSSL*FPGHNS Trigger: GCTATTGTGCCCTGGGAATCATAAGCTTGACCTTTT...GACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR GCA 72 bp | AGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTaGAGAGCAAGTTCTAGGACAGCCAAGGCTACACAG | + |
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Preference number: 3 (lower is better) Translates to: STWKEEFKGSLV*RASSRTAKATQ Trigger: CTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR CCA 72 bp | ATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTaGTCTGCAGAGCAAGTTCTAGGACAGCCAAGGCTA | + |
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Preference number: 3 (lower is better) Translates to: IPALGKKSSRAV*SAEQVLGQPRL Trigger: TAGCCTTGGCTGTCCTAGAACTTGCTCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| 3UTR TCA 72 bp | GGGAAGGGGAGAAGAGGAGTAAAAAGGTCAAGCTTATaGTTCCCAGGGCACAATAGCAGTTGTGTGGACAGG | + |
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Preference number: 3 (lower is better) Translates to: GKGRRGVKRSSL*FPGHNSSCVDR Trigger: CCTGTCCACACAACTGCTATTGTGCCCTGGGAATCATAAGCTTGACCTTTTTACTCCTCTTCTCCCCTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | GGCATGGGCAGCACAGAACGCCTGTGTCACAGAAGGAATGGCTCTGAAGCCCTGTGTCGGTGCTGCAGATaGGACGCAGTGACTGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GMGSTERLCHRRNGSEALCRCCR*DAVTGP Trigger: AGGGCCAGTCACTGCGTCTCATCTGCAGCACCGACA...CAGGGCTTCAGAGCCATTCCTTCTGTGACACAGGCGTTCTGTGCTGCCCATGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | AACCTAGGTGACTCTTTCCTTCTCCAGAGCCAGCCTCCTGGGGCCACCATGCTTCGGAGCTACCACAGCTaGCCTGGCTGGTTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: NLGDSFLLQSQPPGATMLRSYHS*PGWFPP Trigger: AGGAGGAAACCAGCCAGGCCAGCTGTGGTAGCTCCG...AAGCATGGTGGCCCCAGGAGGCTGGCTCTGGAGAAGGAAAGAGTCACCTAGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | CCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGAGCAAGTTCTCCTGAGGCTGAGGGGTaGTGGTTAGCACTGAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: PSTWKEEFKGSLVCRASSPEAEG*WLALRN Trigger: GTTCCTCAGTGCTAACCATCACCCCTCAGCCTCAGG...AGAACTTGCTCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | AACCTAGGTGACTCTTTCCTTCTCCAGAGCCAGCCTCCTGGGGCCACCATGCTTTCAACCAGGGGATTCTaGGAAACTGAGACCTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: NLGDSFLLQSQPPGATMLSTRGF*ETETLR Trigger: CCTCAAGGTCTCAGTTTCTCAGAATCCCCTGGTTGA...AAGCATGGTGGCCCCAGGAGGCTGGCTCTGGAGAAGGAAAGAGTCACCTAGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | TGGGTGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCCAGTCCAGGAGAAGATaGGAGGTGCCGTCCACCCAC | + |
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Preference number: 4 (lower is better) Translates to: WVVVHIFNPSTWKEEFKGQSRRR*EVPSTH Trigger: GTGGGTGGACGGCACCTCCCATCTTCTCCTGGACTG...GCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAAGCAGATGAGACGCAGTaGCTGGCCCTCAGAGATAGG | + |
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Preference number: 4 (lower is better) Translates to: AEQVLGQPRLHRETLSWKADETQ*LALRDR Trigger: CCTATCTCTGAGGGCCAGTCACTGCGTCTCATCTGC...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR GCA 90 bp | TGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCGGAGAAGATGGGAGGTaGCGTCCACCCACAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: WWCTSLIPALGKKSSRAVGEDGR*RPPTVP Trigger: TGGGACTGTGGGTGGACGGCACCTCCCATCTTCTCC...GACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAAGTCAGGTTGCTGGGATaGCCAGCTTCAAGCGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: AEQVLGQPRLHRETLSWKVRLLG*PASSVS Trigger: GGAGACGCTTGAAGCTGGCCATCCCAGCAACCTGAC...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | TGGGTGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCGTATCTCTTCCTCTGTaGAGGAGGGGGCCGCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: WVVVHIFNPSTWKEEFKGVSLPL*RRGPPQ Trigger: TTGAGGCGGCCCCCTCCTCCACAGAGGAAGAGATAC...GCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCACCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | TGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCGAGAAACTGAGACCTTaGGGGCATCTGGGTGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: WWCTSLIPALGKKSSRAVEKLRP*GHLGAE Trigger: CTCCGCACCCAGATGCCCTCAAGGTCTCAGTTTCTC...GACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR GCA 90 bp | AAGCCCTGTGTATCACATGTCAACCTAGGTGACTCTTTCCTTCTCCAGAGCCAGCTCAGAGCTGTCATCTaGCTGGGATTCAACCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: KPCVSHVNLGDSFLLQSQLRAVI*LGFNQG Trigger: CCCCTGGTTGAATCCCAGGCAGATGACAGCTCTGAG...CTGGCTCTGGAGAAGGAAAGAGTCACCTAGGTTGACATGTGATACACAGGGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | GTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGGGCTTGGACAACTTTaGTGGGCACAGGGTCAGGTT | + |
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Preference number: 4 (lower is better) Translates to: VVHIFNPSTWKEEFKGSLGLGQL*WAQGQV Trigger: AACCTGACCCTGTGCCCATCAAAGTTGTCCAAGCCC...CAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | TGGTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCCACAGCTGGCCTGGCTaGTTTCCTCCTGTAGGATCT | + |
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Preference number: 4 (lower is better) Translates to: WWCTSLIPALGKKSSRAVHSWPG*FPPVGS Trigger: AGATCCTACAGGAGGAAACCAGCCAGGCCAGCTGTG...GACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | ATGGCTCTGAAGCCCTGTGTATCACATGTCAACCTAGGTGACTCTTTCCTTCTCTCCATGAACTGGGTCTaGGTCAGTCCAGTCAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: MALKPCVSHVNLGDSFLLSMNWV*VSPVSQ Trigger: TTGACTGACTGGACTGACTCAGACCCAGTTCATGGA...GAGAAGGAAAGAGTCACCTAGGTTGACATGTGATACACAGGGCTTCAGAGCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR GCA 90 bp | ACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCACCTCCGTGCTTAAGATaGACTGGAAACAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TSLIPALGKKSSRAVWSAPPCLR*TGNSSR Trigger: CCTGGAGCTGTTTCCAGTGCATCTTAAGCACGGAGG...TGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | ACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGTGCTTAAGATGCACTaGAAACAGCTCCAGGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: TSLIPALGKKSSRAVWSAVLKMH*KQLQEP Trigger: GGGCTCCTGGAGCTGTTTCCAGTGCATCTTAAGCAC...TGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | ATGGCTCTGAAGCCCTGTGTATCACATGTCAACCTAGGTGACTCTTTCCTTCTCGTTGGTGCTCAAAAATaGCACAGAGGTACCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: MALKPCVSHVNLGDSFLLVGAQK*HRGTSP Trigger: TGGACTGGTACCTCTGTGTCATTTTTGAGCACCAAC...GAGAAGGAAAGAGTCACCTAGGTTGACATGTGATACACAGGGCTTCAGAGCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAACAGGATTGTGGAAACTaGGTCAGCTCCTTGATAGAT | + |
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Preference number: 4 (lower is better) Translates to: AEQVLGQPRLHRETLSWKQDCGN*VSSLID Trigger: ATCTATCAAGGAGCTGACTCAGTTTCCACAATCCTG...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAACACTGCTTTACGAATTaGGTTATTTGTGGCCACGAT | + |
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Preference number: 4 (lower is better) Translates to: AEQVLGQPRLHRETLSWKHCFTN*VICGHD Trigger: ATCGTGGCCACAAATAACCCAATTCGTAAAGCAGTG...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR TCA 90 bp | GTGGTGCACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGAGAGATAGGAAGAGATaGGCCATTCTTCAGGATTGT | + |
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Preference number: 4 (lower is better) Translates to: VVHIFNPSTWKEEFKGSLRDRKR*AILQDC Trigger: ACAATCCTGAAGAATGGCTCATCTCTTCCTATCTCT...CAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCACCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CCA 90 bp | ACATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGAATTGGGTTATTTGTaGCCACGATGGAATCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: TSLIPALGKKSSRAVWSAELGYL*PRWNLC Trigger: GCAAAGATTCCATCGTGGCCACAAATAACCCAATTC...TGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 90 bp | GACCTTGAGGGCATCTGGGTGCGGAGCTACCACAGCTGGCCTGGCTaGTTTCCTCCTGTAGGATCTTACTGCCAGGAGGAGGATGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: DLEGIWVRSYHSWPG*FPPVGSYCQEEDAD Trigger: GTCTGCATCCTCCTCCTGGCAGTAAGATCCTACAGGAGGAAACCAGCCAGGCCAGCTGTGGTAGCTCCGCACCCAGATGCCCTCAAGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CAA 90 bp | GGCATGGGCAGCACAGAACGCCTGTGTCACAGAAGGAATGGCTCTGAAGCCCTGGGAGCCCAGGGCATGTaGAGCTTGGCAGGTATACAC | + |
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Preference number: 5 (lower is better) Translates to: GMGSTERLCHRRNGSEALGAQGM*SLAGIH Trigger: GTGTATACCTGCCAAGCTCAACATGCCCTGGGCTCC...CAGGGCTTCAGAGCCATTCCTTCTGTGACACAGGCGTTCTGTGCTGCCCATGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS TCA 90 bp | AGAGCTGTCATCTGCCTGGGATTCAACCAGGGGATTCTGAGAAACTaGGACCTTGAGGGCATCTGGGTGCGGAGCTACCACAGCTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RAVICLGFNQGILRN*DLEGIWVRSYHSWP Trigger: AGGCCAGCTGTGGTAGCTCCGCACCCAGATGCCCTCAAGGTCTCAGTTTCTCAGAATCCCCTGGTTGAATCCCAGGCAGATGACAGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 90 bp | CATAATGTATCTCTTCCTCTGTGGAGGAGGGGGCCGCCTCAAGTATaGAAGGCAGGGGCTCAGAGCTGTCATCTGCCTGGGATTCAACCA | + |
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Preference number: 5 (lower is better) Translates to: HNVSLPLWRRGPPQV*KAGAQSCHLPGIQP Trigger: TGGTTGAATCCCAGGCAGATGACAGCTCTGAGCCCCTGCCTTCCATACTTGAGGCGGCCCCCTCCTCCACAGAGGAAGAGATACATTATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032667.10 ENSMUST00000206421.2 |
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| CDS-3UTR CAA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAACGGGCTTGGACAACTTaGATGGGCACAGGGTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: AEQVLGQPRLHRETLSWKRAWTT*MGTGSG Trigger: ACCTGACCCTGTGCCCATCAAAGTTGTCCAAGCCCG...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CAA 90 bp | GCAGAGCAAGTTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGGAAAGCTCAAGGAAATGTGTaGGGAGCCCAGGGCATGTTG | + |
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Preference number: 5 (lower is better) Translates to: AEQVLGQPRLHRETLSWKAQGNV*GAQGML Trigger: CAACATGCCCTGGGCTCCCAACACATTTCCTTGAGC...TTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTTGCTCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CAA 90 bp | ATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGACGTGGTAGTGTCCTGTaGCCCCCACAGGTTCATGGG | + |
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Preference number: 5 (lower is better) Translates to: IFNPSTWKEEFKGSLVCRRGSVL*PPQVHG Trigger: CCCATGAACCTGTGGGGGCAACAGGACACTACCACG...TCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CAA 90 bp | ATCTTTAATCCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGACAGGGTGAAAACCTCTaGGGGGTTCTGACCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: IFNPSTWKEEFKGSLVCRQGENL*GVLTLH Trigger: GTGGAGGGTCAGAACCCCCAAGAGGTTTTCACCCTG...TCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS TCA 90 bp | ATGGAATCTTTGCGTCTGTCGGTTCCTTCCCTGTACCAGAATCCATaGACTGGGTCTGAGTCAGTCCAGTCAGTCAACCTCTTCTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: MESLRLSVPSLYQNP*TGSESVQSVNLFLR Trigger: TCTCAAGAAGAGGTTGACTGACTGGACTGACTCAGACCCAGTTCATGGATTCTGGTACAGGGAAGGAACCGACAGACGCAAAGATTCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 90 bp | GAGCAGGAAGAATCGATTCCGGGTTTCCTTCACTGCTTTACGAATTaGGTTATTTGTGGCCACGATGGAATCTTTGCGTCTGTCGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: EQEESIPGFLHCFTN*VICGHDGIFASVGS Trigger: GGAACCGACAGACGCAAAGATTCCATCGTGGCCACAAATAACCCAATTCGTAAAGCAGTGAAGGAAACCCGGAATCGATTCTTCCTGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CAA 90 bp | AAGCCCTGTGTATCACATGTCAACCTAGGTGACTCTTTCCTTCTCCAGAGCCAGGGAGCATATGACACGTaGAGACGGATGGTCATTCTT | + |
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Preference number: 5 (lower is better) Translates to: KPCVSHVNLGDSFLLQSQGAYDT*RRMVIL Trigger: AAGAATGACCATCCGTCTCAACGTGTCATATGCTCC...CTGGCTCTGGAGAAGGAAAGAGTCACCTAGGTTGACATGTGATACACAGGGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 90 bp | GGGTTTCCTTCACTGCTTTACGAATTGGGTTATTTGTGGCCACGATaGAATCTTTGCGTCTGTCGGTTCCTTCCCTGTACCAGAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: GFPSLLYELGYLWPR*NLCVCRFLPCTRIH Trigger: ATGGATTCTGGTACAGGGAAGGAACCGACAGACGCAAAGATTCCATCGTGGCCACAAATAACCCAATTCGTAAAGCAGTGAAGGAAACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS-3UTR CAA 90 bp | CCCAGCACTTGGAAAGAAGAGTTCAAGGGCAGTCTGGTCTGCAGAGCAAGTTCTTCATTTCAGATAAAGTaGCACTGCTCTGTGGAGACA | + |
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Preference number: 5 (lower is better) Translates to: PSTWKEEFKGSLVCRASSSFQIK*HCSVET Trigger: TGTCTCCACAGAGCAGTGCAACTTTATCTGAAATGA...AGAACTTGCTCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 72 bp | TCTCTTCCTCTGTGGAGGAGGGGGCCGCCTCAAGTATaGAAGGCAGGGGCTCAGAGCTGTCATCTGCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SLPLWRRGPPQV*KAGAQSCHLPG Trigger: CCCAGGCAGATGACAGCTCTGAGCCCCTGCCTTCCATACTTGAGGCGGCCCCCTCCTCCACAGAGGAAGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032667.10 ENSMUST00000206421.2 |
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| CDS CCA 72 bp | GGCATCTGGGTGCGGAGCTACCACAGCTGGCCTGGCTaGTTTCCTCCTGTAGGATCTTACTGCCAGGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: GIWVRSYHSWPG*FPPVGSYCQEE Trigger: CTCCTCCTGGCAGTAAGATCCTACAGGAGGAAACCAGCCAGGCCAGCTGTGGTAGCTCCGCACCCAGATGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 72 bp | GACCTTGAGGGCATCTGGGTGCGGAGCTACCACAGCTaGCCTGGCTGGTTTCCTCCTGTAGGATCTTACTGC | + |
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Preference number: 6 (lower is better) Translates to: DLEGIWVRSYHS*PGWFPPVGSYC Trigger: GCAGTAAGATCCTACAGGAGGAAACCAGCCAGGCCAGCTGTGGTAGCTCCGCACCCAGATGCCCTCAAGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS TCA 72 bp | TGGAAACAGCTCCAGGAGCCCGGGCTTGGACAACTTTaGTGGGCACAGGGTCAGGTTATCCCAGGACCAGCT | + |
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Preference number: 6 (lower is better) Translates to: WKQLQEPGLGQL*WAQGQVIPGPA Trigger: AGCTGGTCCTGGGATAACCTGACCCTGTGCCCATCAAAGTTGTCCAAGCCCGGGCTCCTGGAGCTGTTTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032667.10 ENSMUST00000206421.2 |
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| CDS TCA 72 bp | GGGATTCAACCAGGGGATTCTGAGAAACTGAGACCTTaGGGGCATCTGGGTGCGGAGCTACCACAGCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: GIQPGDSEKLRP*GHLGAELPQLA Trigger: GGCCAGCTGTGGTAGCTCCGCACCCAGATGCCCTCAAGGTCTCAGTTTCTCAGAATCCCCTGGTTGAATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS TCA 72 bp | ATCTGCCTGGGATTCAACCAGGGGATTCTGAGAAACTaGGACCTTGAGGGCATCTGGGTGCGGAGCTACCAC | + |
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Preference number: 6 (lower is better) Translates to: ICLGFNQGILRN*DLEGIWVRSYH Trigger: GTGGTAGCTCCGCACCCAGATGCCCTCAAGGTCTCAGTTTCTCAGAATCCCCTGGTTGAATCCCAGGCAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS GCA 72 bp | TCCGAGCAGGAAGAATCGATTCCGGGTTTCCTTCACTaGTTTACGAATTGGGTTATTTGTGGCCACGATGGA | + |
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Preference number: 6 (lower is better) Translates to: SEQEESIPGFLH*FTNWVICGHDG Trigger: TCCATCGTGGCCACAAATAACCCAATTCGTAAAGCAGTGAAGGAAACCCGGAATCGATTCTTCCTGCTCGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CAA 72 bp | TTACGAATTGGGTTATTTGTGGCCACGATGGAATCTTaGCGTCTGTCGGTTCCTTCCCTGTACCAGAATCCA | + |
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Preference number: 6 (lower is better) Translates to: LRIGLFVATMES*RLSVPSLYQNP Trigger: TGGATTCTGGTACAGGGAAGGAACCGACAGACGCAAAGATTCCATCGTGGCCACAAATAACCCAATTCGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CCA 72 bp | GAATCGATTCCGGGTTTCCTTCACTGCTTTACGAATTaGGTTATTTGTGGCCACGATGGAATCTTTGCGTCT | + |
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Preference number: 6 (lower is better) Translates to: ESIPGFLHCFTN*VICGHDGIFAS Trigger: AGACGCAAAGATTCCATCGTGGCCACAAATAACCCAATTCGTAAAGCAGTGAAGGAAACCCGGAATCGATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032667.10 |
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| CDS CAA 72 bp | AACCCACAAAGGTCCCCATCATCATTTCAGATAAAGTaGCACTGCTCTGTGGAGACAGGCTCAAGGAAATGT | + |
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Preference number: 6 (lower is better) Translates to: NPQRSPSSFQIK*HCSVETGSRKC Trigger: ACATTTCCTTGAGCCTGTCTCCACAGAGCAGTGCAACTTTATCTGAAATGATGATGGGGACCTTTGTGGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032667.10 ENSMUST00000206421.2 |
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| CDS CAA 72 bp | ATGGTCACAGTCAGATTCTTTGGAGCATATGACACGTaGAGACGGATGGTCATTCTTGTGGACACATTAGTT | + |
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Preference number: 6 (lower is better) Translates to: MVTVRFFGAYDT*RRMVILVDTLV Trigger: AACTAATGTGTCCACAAGAATGACCATCCGTCTCAACGTGTCATATGCTCCAAAGAATCTGACTGTGACCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032667.10 ENSMUST00000206421.2 |
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