RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SIDT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034908

Ensembl transcript IDs: ENSMUST00000038488.17, ENSMUST00000114573.9, ENSMUST00000159033.2, ENSMUST00000160138.8, ENSMUST00000160618.8, ENSMUST00000161042.2, ENSMUST00000161606.8, ENSMUST00000162072.8, ENSMUST00000162379.2, ENSMUST00000162529.8

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCACCGAAAGCCTaGCACCAGCTGGCCAGCCCCCAAAGTCTCCTACCTGCATCTGTC +
Preference number: 1 (lower is better)
Translates to: GGSYLGPLQALAPKA*HQLASPQSLLPASV
Trigger: GACAGATGCAGGTAGGAGACTTTGGGGGCTGGCCAGCTGGTGCCAGGCTTTCGGTGCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp GGCACCAGCTGGCCAGCCCCCAAAGTCTCCTACCTGCATCTGTCCTaGCAGGTCAGAGTGGGCAGTGATAGCAGCCAGCTACAGACCCAG +
Preference number: 1 (lower is better)
Translates to: GTSWPAPKVSYLHLS*QVRVGSDSSQLQTQ
Trigger: CTGGGTCTGTAGCTGGCTGCTATCACTGCCCACTCTGACCTGCCAGGACAGATGCAGGTAGGAGACTTTGGGGGCTGGCCAGCTGGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR TCA 90 bp ACCGTTCCGTGGCCTCTAGACATTCTTGGGCAGTGTCAATGGCACTaGGAGGCCCCCATCTGGGGCTTGGCAGGACTGAGGGTGTGGAAG +
Preference number: 1 (lower is better)
Translates to: TVPWPLDILGQCQWH*EAPIWGLAGLRVWK
Trigger: CTTCCACACCCTCAGTCCTGCCAAGCCCCAGATGGGGGCCTCTCAGTGCCATTGACACTGCCCAAGAATGTCTAGAGGCCACGGAACGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp CTAGGGTCCTGGGGAGGACCCAACACTGAGAAGAAAGCAGCAATTTaGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCTCCGCAGA +
Preference number: 1 (lower is better)
Translates to: LGSWGGPNTEKKAAI*PVSGECGAGLLLRR
Trigger: TCTGCGGAGGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGTGTTGGGTCCTCCCCAGGACCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp CCAAGGCTCAGTGCCACCAGGAACTATCCTGAGTCAGGCCTGGGCTaGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGA +
Preference number: 1 (lower is better)
Translates to: PRLSATRNYPESGLG*NLAVLPRHPMLGSR
Trigger: TCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCAGCCCAGGCCTGACTCAGGATAGTTCCTGGTGGCACTGAGCCTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp CAGCCCCCAAAGTCTCCTACCTGCATCTGTCCTGGCAGGTCAGAGTaGGCAGTGATAGCAGCCAGCTACAGACCCAGGGAGAGCTTAGGT +
Preference number: 1 (lower is better)
Translates to: QPPKSPTCICPGRSE*AVIAASYRPRESLG
Trigger: ACCTAAGCTCTCCCTGGGTCTGTAGCTGGCTGCTATCACTGCCCACTCTGACCTGCCAGGACAGATGCAGGTAGGAGACTTTGGGGGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp CAACTCCAAGGCTCAGTGCCACCAGGAACTATCCTGAGTCAGGCCTaGGCTGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCA +
Preference number: 1 (lower is better)
Translates to: QLQGSVPPGTILSQA*AGISLSCHDIQCWA
Trigger: TGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCAGCCCAGGCCTGACTCAGGATAGTTCCTGGTGGCACTGAGCCTTGGAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR TCA 90 bp CACTGCGTCAAAGGAGCGGTCCTGGTAACTGTAGGAGAGGTCCCCTaGACCTGCGCTTTCAACCAACCCGTCAGTGGATCCGGAACCATT +
Preference number: 1 (lower is better)
Translates to: HCVKGAVLVTVGEVP*TCAFNQPVSGSGTI
Trigger: AATGGTTCCGGATCCACTGACGGGTTGGTTGAAAGCGCAGGTTCAGGGGACCTCTCCTACAGTTACCAGGACCGCTCCTTTGACGCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
3UTR GCA 90 bp ATTCACCACCGTCTGGTAGGTGATCACCAGCTGCACCACAGGAAGTaGGTAGAAGACCGCAATGGTGGCTATGTTCCTGAGGGGGAAGGG +
Preference number: 1 (lower is better)
Translates to: IHHRLVGDHQLHHRK*VEDRNGGYVPEGEG
Trigger: CCCTTCCCCCTCAGGAACATAGCCACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAGCTGGTGATCACCTACCAGACGGTGGTGAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR CCA 90 bp GAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTaGGACTCATACCCGTGGTGTTCTTGTGGCAACTGGCAGGTGATG +
Preference number: 1 (lower is better)
Translates to: ESRCLATTSNAGQQS*DSYPWCSCGNWQVM
Trigger: CATCACCTGCCAGTTGCCACAAGAACACCACGGGTATGAGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp CCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTaGAGAGAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGG +
Preference number: 1 (lower is better)
Translates to: PRPASSPSPRAIKTW*REGNTFLGPTLGIW
Trigger: CCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTCTCTCCACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 90 bp ATTGCCTTCCCACCTTCCTCTCCAAAGGGACAAATGGAGAGCCAGTaGATAAACAAGACAGATGGACAGACTAGGGTCCTGGGGAGGACC +
Preference number: 1 (lower is better)
Translates to: IAFPPSSPKGQMESQ*INKTDGQTRVLGRT
Trigger: GGTCCTCCCCAGGACCCTAGTCTGTCCATCTGTCTTGTTTATCCACTGGCTCTCCATTTGTCCCTTTGGAGAGGAAGGTGGGAAGGCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR TCA 90 bp CCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTCTTAGGCCTACGTaGCTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAA +
Preference number: 1 (lower is better)
Translates to: PELGDSVNAKALRPT*LTQNLAKYWTETQK
Trigger: TTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAGTCACGTAGGCCTAAGAGCCTTGGCGTTTACAGAGTCACCCAGCTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCCCAGTGTCTGGGGAATaGGGAGCAGGCCTCCTCCTC +
Preference number: 2 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSPVSGE*GAGLLL
Trigger: GAGGAGGAGGCCTGCTCCGCATTCCCCAGACACTGG...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGCGCCAAGGACCAGAATaGCCAGGGGCCAGAGCTGGG +
Preference number: 2 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLRQGPE*PGARAG
Trigger: CCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCG...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CAA 90 bp AGGAAGAGCAGCCCCAGCAGGATGTACCCCAAGTTGCTGAGGATGTaGTTGAAGGCGCTGAGGTTGCCCAGCGGGTGGGCACAGAGGAAG +
Preference number: 2 (lower is better)
Translates to: RKSSPSRMYPKLLRM*LKALRLPSGWAQRK
Trigger: CTTCCTCTGTGCCCACCCGCTGGGCAACCTCAGCGCCTTCAACAACATCCTCAGCAACTTGGGGTACATCCTGCTGGGGCTGCTCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR-3UTR TCA 90 bp TCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTACAGTGTCAATGGCACTaGGAGGCCCCCATCTGGGGC +
Preference number: 2 (lower is better)
Translates to: SVNAKDQNGQGPELGDSVQCQWH*EAPIWG
Trigger: GCCCCAGATGGGGGCCTCTCAGTGCCATTGACACTG...TACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp GGTGACTCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTGCCACGACATCCAATaGTGGGCAGCAGAGCTGGGA +
Preference number: 2 (lower is better)
Translates to: GDSVNAKDQNGQGPELGDCHDIQ*WAAELG
Trigger: TCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCA...GTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGAGTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGGCAAAAGGGACTGTGTaGTTGGCACCGTTCCGTGGC +
Preference number: 2 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLAKGTV*LAPFRG
Trigger: GCCACGGAACGGTGCCAAGCACACAGTCCCTTTTGC...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp TCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAAGCCTGGCACCAGCTaGCCAGCCCCCAAAGTCTCC +
Preference number: 2 (lower is better)
Translates to: SVNAKDQNGQGPELGDSVKPGTS*PAPKVS
Trigger: GGAGACTTTGGGGGCTGGCCAGCTGGTGCCAGGCTT...TACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTAAGGGACTGTGTGCTTaGCACCGTTCCGTGGCCTCT +
Preference number: 2 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTKGLCA*HRSVAS
Trigger: AGAGGCCACGGAACGGTGCCAAGCACACAGTCCCTT...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp GAGAGAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGGCTGGCCCTCACTGCTaGAGAGCCAGCTCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: ERRKHIPGAHSWHLEWTWAGPHC*RASSKH
Trigger: GTGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGC...CCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCGCTGGGCAGCAGAGCTaGGACTCATACCCGTGGTGT +
Preference number: 2 (lower is better)
Translates to: DQKTQLGLALTAEEPAPSAGQQS*DSYPWC
Trigger: ACACCACGGGTATGAGTCCCAGCTCTGCTGCCCAGC...GCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GGTGACTCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACATCCTGAGTCAGGCCTaGGCTGGAATCTCGCTGTCT +
Preference number: 2 (lower is better)
Translates to: GDSVNAKDQNGQGPELGDILSQA*AGISLS
Trigger: AGACAGCGAGATTCCAGCCCAGGCCTGACTCAGGAT...GTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGAGTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCAAAGCCTGGCACCAGCTaGCCAGCCCCCAAAGTCTCC +
Preference number: 2 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQAKPGTS*PAPKVS
Trigger: GGAGACTTTGGGGGCTGGCCAGCTGGTGCCAGGCTT...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GGTGACTCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACGGACACACAGGGACCTaGCATGTTCCTCCCTTTCCA +
Preference number: 2 (lower is better)
Translates to: GDSVNAKDQNGQGPELGDGHTGT*HVPPFP
Trigger: TGGAAAGGGAGGAACATGCCAGGTCCCTGTGTGTCC...GTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGAGTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCAGCTAGGCCTGTGAGGTaGAGCCTGGACCACAGATGC +
Preference number: 2 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQAARPVR*SLDHRC
Trigger: GCATCTGTGGTCCAGGCTTCACCTCACAGGCCTAGC...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp GATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCCTGTGTGTCCTAAGCTaGGAGGAGGGAAGGGATGGG +
Preference number: 2 (lower is better)
Translates to: DQKTQLGLALTAEEPAPSLCVLS*EEGRDG
Trigger: CCCATCCCTTCCCTCCTCTCAGCTTAGGACACACAG...GCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp AAAGTGTTTGGGGATCCCACACTCCAGAGCATAGAGGTCATTCCGCAGCAGGGCCCACCGTCTGGTAGGTaGTCACCAGCTGCACCACAG +
Preference number: 2 (lower is better)
Translates to: KVFGDPTLQSIEVIPQQGPPSGR*SPAAPQ
Trigger: CTGTGGTGCAGCTGGTGATCACCTACCAGACGGTGG...GCCCTGCTGCGGAATGACCTCTATGCTCTGGAGTGTGGGATCCCCAAACACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR-3UTR GCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGCCAAAGTCTCCTACCTaGATCTGTCCTGGCAGGTCA +
Preference number: 2 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLPKSPT*ICPGRS
Trigger: TGACCTGCCAGGACAGATGCAGGTAGGAGACTTTGG...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCGCTGGGCAGCAGAGCTaGGACTCATACCCGTGGTGT +
Preference number: 2 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLAGQQS*DSYPWC
Trigger: ACACCACGGGTATGAGTCCCAGCTCTGCTGCCCAGC...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTACCAGACTGTGGTCCTaGACAGAGCATGGGAAGAAG +
Preference number: 2 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTTRLWS*TEHGKK
Trigger: CTTCTTCCCATGCTCTGTCCAGGACCACAGTCTGGT...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTTACCTGCATCTGTCCTaGCAGGTCAGAGTGGGCAGT +
Preference number: 2 (lower is better)
Translates to: KDQNGQGPELGDSVNAKAYLHLS*QVRVGS
Trigger: ACTGCCCACTCTGACCTGCCAGGACAGATGCAGGTA...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCATTCTAGTGGCTGGTaGGATGAGGTGGCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTHSSGW*DEVASE
Trigger: TTCAGAGGCCACCTCATCCCACCAGCCACTAGAATG...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCATGCCACGACATCCAATaGTGGGCAGCAGAGCTGGGA +
Preference number: 2 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQACHDIQ*WAAELG
Trigger: TCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCA...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTGGAATCTCGCTGTCTTaGCACGACATCCAATGCTGG +
Preference number: 2 (lower is better)
Translates to: KDQNGQGPELGDSVNAKAGISLS*HDIQCW
Trigger: CCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCC...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCATCCTGAGTCAGGCCTaGGCTGGAATCTCGCTGTCT +
Preference number: 2 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSILSQA*AGISLS
Trigger: AGACAGCGAGATTCCAGCCCAGGCCTGACTCAGGAT...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTCATCATTCTAGTGGCTaGTGGGATGAGGTGGCCTCT +
Preference number: 2 (lower is better)
Translates to: KDQNGQGPELGDSVNAKAHHSSG*WDEVAS
Trigger: AGAGGCCACCTCATCCCACCAGCCACTAGAATGATG...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCACTGTGTGTCCTAAGCTaGGAGGAGGGAAGGGATGGG +
Preference number: 2 (lower is better)
Translates to: ILDGNSETSPESFGETGPLCVLS*EEGRDG
Trigger: CCCATCCCTTCCCTCCTCTCAGCTTAGGACACACAG...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp CCGGTTATGATTGATCTCTCGCTGCAGGATGATGAGCAGGAAGAGCAGCCCCAGTGTCCTGGTTCCCTGTaGCATTCACCACCGTCTGGT +
Preference number: 2 (lower is better)
Translates to: PVMIDLSLQDDEQEEQPQCPGSL*HSPPSG
Trigger: ACCAGACGGTGGTGAATGTCACAGGGAACCAGGACA...CTGGGGCTGCTCTTCCTGCTCATCATCCTGCAGCGAGAGATCAATCATAACCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR-3UTR GCA 90 bp GATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCGGAATCTCGCTGTCTTaGCACGACATCCAATGCTGG +
Preference number: 2 (lower is better)
Translates to: DQKTQLGLALTAEEPAPSGISLS*HDIQCW
Trigger: CCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCC...GCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTTGTTCTTGTGGCAACTaGCAGGTGATGCAGAGGCAG +
Preference number: 2 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTCSCGN*QVMQRQ
Trigger: CTGCCTCTGCATCACCTGCCAGTTGCCACAAGAACA...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCACACGACATCCAATGCTaGGCAGCAGAGCTGGGACTC +
Preference number: 2 (lower is better)
Translates to: ILDGNSETSPESFGETGPHDIQC*AAELGL
Trigger: GAGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTG...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGAAGAAAGCAGCAATTTaGCCAGTGTCTGGGGAATGC +
Preference number: 2 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLKKAAI*PVSGEC
Trigger: GCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTT...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCATACCTGCATCTGTCCTaGCAGGTCAGAGTGGGCAGT +
Preference number: 2 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQAYLHLS*QVRVGS
Trigger: ACTGCCCACTCTGACCTGCCAGGACAGATGCAGGTA...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGGGGGCCAGAGCTGGGTaGCTCTGTAAACGCCAAGGC +
Preference number: 2 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPGARAG*LCKRQG
Trigger: GCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCC...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCAAATGGGACAGGACATTaGCTTCCCACCTTCCTCTCC +
Preference number: 2 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQANGTGH*LPTFLS
Trigger: GGAGAGGAAGGTGGGAAGGCAATGTCCTGTCCCATT...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGACCAAAGTCTCCTACCTaGATCTGTCCTGGCAGGTCA +
Preference number: 2 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGPKSPT*ICPGRS
Trigger: TGACCTGCCAGGACAGATGCAGGTAGGAGACTTTGG...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCCAAATGGAGAGCCAGTaGATAAACAAGACAGATGGA +
Preference number: 2 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSQMESQ*INKTDG
Trigger: TCCATCTGTCTTGTTTATCCACTGGCTCTCCATTTG...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp ACAAAGACCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTGAAGGGACTGTGTGCTTaGCACCGTTCCGTGGCCTCT +
Preference number: 2 (lower is better)
Translates to: TKTQTRLFSQPKSYKNMVKGLCA*HRSVAS
Trigger: AGAGGCCACGGAACGGTGCCAAGCACACAGTCCCTT...CACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGGTCTTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGGCTAGGCCTGTGAGGTaGAGCCTGGACCACAGATGC +
Preference number: 2 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPARPVR*SLDHRC
Trigger: GCATCTGTGGTCCAGGCTTCACCTCACAGGCCTAGC...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAGGGAGGACCCAACACTaGGAAGAAAGCAGCAATTTG +
Preference number: 2 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGGRTQH*EESSNL
Trigger: CAAATTGCTGCTTTCTTCTCAGTGTTGGGTCCTCCC...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAGCAGAATGCAAGGCATaGAATGGGACAGGACATTGC +
Preference number: 2 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGAECKA*NGTGHC
Trigger: GCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGC...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp CTTCCCACCAACCCTAGTGCTGGCATCATTCTAGTGGCTGGTGGGATGAGGTGGAAGAAAGCAGCAATTTaGCCAGTGTCTGGGGAATGC +
Preference number: 2 (lower is better)
Translates to: LPTNPSAGIILVAGGMRWKKAAI*PVSGEC
Trigger: GCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTT...CCACCTCATCCCACCAGCCACTAGAATGATGCCAGCACTAGGGTTGGTGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTTTAGCACCGAAAGCCTaGCACCAGCTGGCCAGCCCC +
Preference number: 2 (lower is better)
Translates to: LTQNLAKYWTETQKPALSLAPKA*HQLASP
Trigger: GGGGCTGGCCAGCTGGTGCCAGGCTTTCGGTGCTAA...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp ACAAAGACCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTGAGACTCAACTTGGGCTaGCCCTCACTGCTGAAGAGC +
Preference number: 2 (lower is better)
Translates to: TKTQTRLFSQPKSYKNMVRLNLG*PSLLKS
Trigger: GCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCT...CACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGGTCTTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAATGCAAGGCATGAAATaGGACAGGACATTGCCTTCC +
Preference number: 2 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGMQGMK*DRTLPS
Trigger: GGAAGGCAATGTCCTGTCCCATTTCATGCCTTGCAT...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGGCTGGTGGGATGAGGTaGCCTCTGAATTCAGTCCCC +
Preference number: 2 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPAGGMR*PLNSVP
Trigger: GGGGACTGAATTCAGAGGCCACCTCATCCCACCAGC...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR TCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGGCAGAATGCAAGGCATaGAATGGGACAGGACATTGC +
Preference number: 2 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVAECKA*NGTGHC
Trigger: GCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGC...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTGCAGGACTGAGGGTGTaGAAGGGGACAGTGAGTTGC +
Preference number: 2 (lower is better)
Translates to: LTQNLAKYWTETQKPALSAGLRV*KGTVSC
Trigger: GCAACTCACTGTCCCCTTCCACACCCTCAGTCCTGC...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGGCCTCTAGACATTCTTaGGCAGTGTCAATGGCACTG +
Preference number: 2 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVASRHS*AVSMAL
Trigger: CAGTGCCATTGACACTGCCCAAGAATGTCTAGAGGC...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGTGTTCTTGTGGCAACTaGCAGGTGATGCAGAGGCAG +
Preference number: 2 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPCSCGN*QVMQRQ
Trigger: CTGCCTCTGCATCACCTGCCAGTTGCCACAAGAACA...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTGGACACACAGGGACCTaGCATGTTCCTCCCTTTCCA +
Preference number: 2 (lower is better)
Translates to: LTQNLAKYWTETQKPALSGHTGT*HVPPFP
Trigger: TGGAAAGGGAGGAACATGCCAGGTCCCTGTGTGTCC...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR GCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTAAGGGGACAGTGAGTTaGCACTTCCCACCAACCCTA +
Preference number: 2 (lower is better)
Translates to: LTQNLAKYWTETQKPALSKGTVS*HFPPTL
Trigger: TAGGGTTGGTGGGAAGTGGCAACTCACTGTCCCCTT...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACCAAATGGAGAGCCAGTaGATAAACAAGACAGATGGA +
Preference number: 2 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHQMESQ*INKTDG
Trigger: TCCATCTGTCTTGTTTATCCACTGGCTCTCCATTTG...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCATTCTAGTGGCTGGTaGGATGAGGTGGCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: LTQNLAKYWTETQKPALSHSSGW*DEVASE
Trigger: TTCAGAGGCCACCTCATCCCACCAGCCACTAGAATG...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR GCA 72 bp GGAGCTCATGGAGTCCAGTCGAGGCCGAGGACCCACTaGGTCAAAGGAGCGGTCCTGGTAACTGTAGGAGAG +
Preference number: 3 (lower is better)
Translates to: GAHGVQSRPRTH*VKGAVLVTVGE
Trigger: CTCTCCTACAGTTACCAGGACCGCTCCTTTGACGCAGTGGGTCCTCGGCCTCGACTGGACTCCATGAGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
3UTR CCA 72 bp GCAGCAGAGCTGGGACTCATACCCGTGGTGTTCTTGTaGCAACTGGCAGGTGATGCAGAGGCAGGCGCTAGG +
Preference number: 3 (lower is better)
Translates to: AAELGLIPVVFL*QLAGDAEAGAR
Trigger: CCTAGCGCCTGCCTCTGCATCACCTGCCAGTTGCCACAAGAACACCACGGGTATGAGTCCCAGCTCTGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCAGCCCCCATCTGGGGCTaGGCAGGACTGAGGGTGTGG +
Preference number: 3 (lower is better)
Translates to: ILDGNSETSPESFGETGPAPIWG*AGLRVW
Trigger: CCACACCCTCAGTCCTGCCAAGCCCCAGATGGGGGC...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp CCCTGTGACATTCACCACCGTCTGGTAGGTGATCACCAGCTGCACCACAGGAAGAGGGCCAAGGTAAGGTaGGCAGGGCCTGAGGAGCTG +
Preference number: 3 (lower is better)
Translates to: PCDIHHRLVGDHQLHHRKRAKVR*AGPEEL
Trigger: CAGCTCCTCAGGCCCTGCCAACCTTACCTTGGCCCT...CTTCCTGTGGTGCAGCTGGTGATCACCTACCAGACGGTGGTGAATGTCACAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR TCA 72 bp CCCTTTCCACGACAGGCACTGGGACTCCTGCTCCCGTaGAAGAGGCAAAAGGGACTGTGTGCTTGGCACCGT +
Preference number: 3 (lower is better)
Translates to: PFPRQALGLLLP*KRQKGLCAWHR
Trigger: ACGGTGCCAAGCACACAGTCCCTTTTGCCTCTTTCACGGGAGCAGGAGTCCCAGTGCCTGTCGTGGAAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 72 bp TGGCCAGCCCCCAAAGTCTCCTACCTGCATCTGTCCTaGCAGGTCAGAGTGGGCAGTGATAGCAGCCAGCTA +
Preference number: 3 (lower is better)
Translates to: WPAPKVSYLHLS*QVRVGSDSSQL
Trigger: TAGCTGGCTGCTATCACTGCCCACTCTGACCTGCCAGGACAGATGCAGGTAGGAGACTTTGGGGGCTGGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 72 bp CCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTaGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGG +
Preference number: 3 (lower is better)
Translates to: PGAHSWHLEWTW*SEGQPSTKVAR
Trigger: CCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGATCAGAAGACTCAACTaGGGCTGGCCCTCACTGCTG +
Preference number: 3 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLIRRLN*GWPSLL
Trigger: CAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 72 bp GGCTCAGTGCCACCAGGAACTATCCTGAGTCAGGCCTaGGCTGGAATCTCGCTGTCTTGCCACGACATCCAA +
Preference number: 3 (lower is better)
Translates to: GSVPPGTILSQA*AGISLSCHDIQ
Trigger: TTGGATGTCGTGGCAAGACAGCGAGATTCCAGCCCAGGCCTGACTCAGGATAGTTCCTGGTGGCACTGAGCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 72 bp TGGGGAGGACCCAACACTGAGAAGAAAGCAGCAATTTaGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTC +
Preference number: 3 (lower is better)
Translates to: WGGPNTEKKAAI*PVSGECGAGLL
Trigger: GAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGTGTTGGGTCCTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGGCCCCCATCTGGGGCTaGGCAGGACTGAGGGTGTGG +
Preference number: 3 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPAPIWG*AGLRVW
Trigger: CCACACCCTCAGTCCTGCCAAGCCCCAGATGGGGGC...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR TCA 72 bp AAAGGAGCGGTCCTGGTAACTGTAGGAGAGGTCCCCTaGACCTGCGCTTTCAACCAACCCGTCAGTGGATCC +
Preference number: 3 (lower is better)
Translates to: KGAVLVTVGEVP*TCAFNQPVSGS
Trigger: GGATCCACTGACGGGTTGGTTGAAAGCGCAGGTTCAGGGGACCTCTCCTACAGTTACCAGGACCGCTCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
3UTR CCA 72 bp ATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTaGTGGAGTGAAGGGCAACCAAGTACCAAAGTGGCC +
Preference number: 3 (lower is better)
Translates to: IPGAHSWHLEWT*WSEGQPSTKVA
Trigger: GGCCACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp GTGTTTGGGGATCCCACACTCCAGAGCATAGAGGTCATTCCGCAGCAGGGCCCGAGGATGTACCCCAAGTaGCTGAGGATGTTGTTGAAG +
Preference number: 3 (lower is better)
Translates to: VFGDPTLQSIEVIPQQGPRMYPK*LRMLLK
Trigger: CTTCAACAACATCCTCAGCAACTTGGGGTACATCCT...CGGGCCCTGCTGCGGAATGACCTCTATGCTCTGGAGTGTGGGATCCCCAAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR GCA 72 bp CGTCTGGTAGGTGATCACCAGCTGCACCACAGGAAGTaGGTAGAAGACCGCAATGGTGGCTATGTTCCTGAG +
Preference number: 3 (lower is better)
Translates to: RLVGDHQLHHRK*VEDRNGGYVPE
Trigger: CTCAGGAACATAGCCACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAGCTGGTGATCACCTACCAGACG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR CCA 72 bp GTGGAGAGAAGGAAACACATTCCTGGGGCCCACTCTTaGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAA +
Preference number: 3 (lower is better)
Translates to: VERRKHIPGAHS*HLEWTWWSEGQ
Trigger: TTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTCTCTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CCA 72 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTaGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTA +
Preference number: 3 (lower is better)
Translates to: EGNTFLGPTLGI*NGPGGVKGNQV
Trigger: TACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCAGAAGAAAGCAGCAATTaGGCCAGTGTCTGGGGAATG +
Preference number: 3 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQAEESSN*ASVWGM
Trigger: CATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTC...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR-3UTR CAA 90 bp AAAGTGTTTGGGGATCCCACACTCCAGAGCATAGAGGTCATTCCGCAGCAGGGCAAGTTGCTGAGGATGTaGTTGAAGGCGCTGAGGTTG +
Preference number: 3 (lower is better)
Translates to: KVFGDPTLQSIEVIPQQGKLLRM*LKALRL
Trigger: CAACCTCAGCGCCTTCAACAACATCCTCAGCAACTT...GCCCTGCTGCGGAATGACCTCTATGCTCTGGAGTGTGGGATCCCCAAACACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR TCA 72 bp GGTGACTCTGTAAACGCCAAGGCTCTTAGGCCTACGTaGCTAACACAGAACTTGGCTAAATACTGGACGGAA +
Preference number: 3 (lower is better)
Translates to: GDSVNAKALRPT*LTQNLAKYWTE
Trigger: TTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAGTCACGTAGGCCTAAGAGCCTTGGCGTTTACAGAGTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR TCA 72 bp AGTAAGACCCCAAATCCCAGGTCTGGTTGTCTTTATTaGATGTACTCGTTCATAGAAAACAATTGCAACCGT +
Preference number: 3 (lower is better)
Translates to: SKTPNPRSGCLY*MYSFIENNCNR
Trigger: ACGGTTGCAATTGTTTTCTATGAACGAGTACATTCAATAAAGACAACCAGACCTGGGATTTGGGGTCTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038488.17
CDS-3UTR TCA 90 bp AGCAGGCCTCCTCCTCCGCAGAGGCAACTCCAAGGCTCAGTGCCACCAGGAACTGCCAAGACCCGGGCGTaGCCACTTTCTGGGCAGGCT +
Preference number: 4 (lower is better)
Translates to: SRPPPPQRQLQGSVPPGTAKTRA*PLSGQA
Trigger: AGCCTGCCCAGAAAGTGGTCACGCCCGGGTCTTGGC...AGTTCCTGGTGGCACTGAGCCTTGGAGTTGCCTCTGCGGAGGAGGAGGCCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CAA 72 bp AGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTaGCAGGCCTTAGCACCGAAAGCCTGGCACCAGCTG +
Preference number: 4 (lower is better)
Translates to: STGQGGGSYLGP*QALAPKAWHQL
Trigger: CAGCTGGTGCCAGGCTTTCGGTGCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTTCTGCGAGACGTTCTTaGGCCCCAGGGCCCCCAGGT +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTSARRS*APGPPG
Trigger: ACCTGGGGGCCCTGGGGCCCAAGAACGTCTCGCAGA...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCCTTCCACGGAGCTCATaGAGTCCAGTCGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSLPRSS*SPVEAE
Trigger: CTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAG...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp CTTCCCACCAACCCTAGTGCTGGCATCATTCTAGTGGCTGGTGGGATGAGGTGGCACAGCTGCCGCATCTaGCCAGAGGGAAGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: LPTNPSAGIILVAGGMRWHSCRI*PEGRRR
Trigger: GCGGCGCCTTCCCTCTGGCCAGATGCGGCAGCTGTG...CCACCTCATCCCACCAGCCACTAGAATGATGCCAGCACTAGGGTTGGTGGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTGGCACTGCCAGGAAATaGATCAGCCAAGACCCGGGC +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTGTARK*ISQDPG
Trigger: GCCCGGGTCTTGGCTGATTCATTTCCTGGCAGTGCC...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTTGTAAAGGGGCCCGCTaGACTGCCGGATGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTCKGAR*TAGCSL
Trigger: CAGACTGCATCCGGCAGTGCAGCGGGCCCCTTTACA...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCTCTGCGAGACGTTCTTaGGCCCCAGGGCCCCCAGGT +
Preference number: 4 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSSARRS*APGPPG
Trigger: ACCTGGGGGCCCTGGGGCCCAAGAACGTCTCGCAGA...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GGTGACTCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACGGCGTGACCACTTTCTaGGCAGGCTCGGTCTATGGC +
Preference number: 4 (lower is better)
Translates to: GDSVNAKDQNGQGPELGDGVTTF*AGSVYG
Trigger: GCCATAGACCGAGCCTGCCCAGAAAGTGGTCACGCC...GTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGAGTCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
3UTR CAA 72 bp CCCAGCAGGATGTACCCCAAGTTGCTGAGGATGTTGTaGAAGGCGCTGAGGTTGCCCAGCGGGTGGGCACAG +
Preference number: 4 (lower is better)
Translates to: PSRMYPKLLRML*KALRLPSGWAQ
Trigger: CTGTGCCCACCCGCTGGGCAACCTCAGCGCCTTCAACAACATCCTCAGCAACTTGGGGTACATCCTGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
3UTR CAA 72 bp AGCCCCAGCAGGATGTACCCCAAGTTGCTGAGGATGTaGTTGAAGGCGCTGAGGTTGCCCAGCGGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: SPSRMYPKLLRM*LKALRLPSGWA
Trigger: TGCCCACCCGCTGGGCAACCTCAGCGCCTTCAACAACATCCTCAGCAACTTGGGGTACATCCTGCTGGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
CDS-3UTR TCA 90 bp CAGATGGACAGACTAGGGTCCTGGGGAGGACCCAACACTGAGAAGAAAGCAGCAGCCAAGACCCGGGCGTaGCCACTTTCTGGGCAGGCT +
Preference number: 4 (lower is better)
Translates to: QMDRLGSWGGPNTEKKAAAKTRA*PLSGQA
Trigger: AGCCTGCCCAGAAAGTGGTCACGCCCGGGTCTTGGC...TGCTGCTTTCTTCTCAGTGTTGGGTCCTCCCCAGGACCCTAGTCTGTCCATCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCAGGGAAGGCGCCGCTTaGACTGGTCGTGCCCCTGGT +
Preference number: 4 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLREGAA*TGRAPG
Trigger: ACCAGGGGCACGACCAGTTCAAGCGGCGCCTTCCCT...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TGGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACAACTCCGCGTCTTTCTaGGAGACGTTCTTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: WSEGQPSTKVARGLELGDNSASF*ETFLGP
Trigger: GGGGCCCAAGAACGTCTCGCAGAAAGACGCGGAGTT...GTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGCAAAGGAGCGGTCCATaGCAATGCACAGCTGCCGCA +
Preference number: 4 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLQRSGP*QCTAAA
Trigger: TGCGGCAGCTGTGCATTGCCATGGACCGCTCCTTTG...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114573.9
3UTR CAA 72 bp TATCCTGAGTCAGGCCTGGGCTGGAATCTCGCTGTCTaGCCACGACATCCAATGCTGGGCAGCAGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: YPESGLGWNLAV*PRHPMLGSRAG
Trigger: CCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCAGCCCAGGCCTGACTCAGGATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCGGCACTGCCAGGAAATaGATCAGCCAAGACCCGGGC +
Preference number: 4 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSGTARK*ISQDPG
Trigger: GCCCGGGTCTTGGCTGATTCATTTCCTGGCAGTGCC...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTTGTCCTGGTTCCCTGTaGCATTCACCACCGTCTGGT +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTCPGSL*HSPPSG
Trigger: ACCAGACGGTGGTGAATGTCACAGGGAACCAGGACA...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCCAGACTCATTCTTGGTaGGGGGCTGACACAGAGTTC +
Preference number: 4 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSQTHSW*GADTEF
Trigger: GAACTCTGTGTCAGCCCCCCACCAAGAATGAGTCTG...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp CATCCTCTTCCACGGAGCTCATGGAGTCCAGTCGAGGCCGAGGACCCACTGCGTGGGCACAGGACATCTTaGATGGAGATGACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: HPLPRSSWSPVEAEDPLRGHRTS*MEMTEQ
Trigger: CTGCTCAGTCATCTCCATCCAAGATGTCCTGTGCCC...ACGCAGTGGGTCCTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAGAGGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR CCA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTGGCGTGACCACTTTCTaGGCAGGCTCGGTCTATGGC +
Preference number: 4 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTGVTTF*AGSVYG
Trigger: GCCATAGACCGAGCCTGCCCAGAAAGTGGTCACGCC...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCACGTGCTCAGTCCCTaGAAGAAGAAGAAGAGCGCG +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTHVLSP*KKKKSA
Trigger: CGCGCTCTTCTTCTTCTTCCAGGGACTGAGCACGTG...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTCGCGGTTGTGCTCCCTaGACTCTGCGGGGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTRGCAP*TLRGFS
Trigger: AGAAAACCCCCGCAGAGTCCAGGGAGCACAACCGCG...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGCAGGCCTCCTCCTCCGCAGAGGCAACTCCAAGGCTCAGTGCCACCAGGAACTACAGCTCTCCAGTCCTaGGCACAAAATTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: SRPPPPQRQLQGSVPPGTTALQS*AQNCPH
Trigger: GTGTGGACAATTTTGTGCTCAGGACTGGAGAGCTGT...AGTTCCTGGTGGCACTGAGCCTTGGAGTTGCCTCTGCGGAGGAGGAGGCCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTTCAGATGTGACAGCCTaGGAGACCAGCACTGACAGT +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTSDVTA*ETSTDS
Trigger: ACTGTCAGTGCTGGTCTCTCAGGCTGTCACATCTGA...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GAGAGAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGCCACCGTCTGGTAGGTaGTCACCAGCTGCACCACAG +
Preference number: 4 (lower is better)
Translates to: ERRKHIPGAHSWHLEWTWPPSGR*SPAAPQ
Trigger: CTGTGGTGCAGCTGGTGATCACCTACCAGACGGTGG...CCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTTGTAGGCACTGGCGTTaGTATCTGGGTGCCGCTTCT +
Preference number: 4 (lower is better)
Translates to: KDQNGQGPELGDSVNAKACRHWR*YLGAAS
Trigger: AGAAGCGGCACCCAGATATCAACGCCAGTGCCTACA...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ATCCTCTTCCACGGAGCTCATGGAGTCCAGTCGAGGCCGAGGACCCACTGCGTCCTGCACAGTGATGGCTaGCTTCTTAGTCATCGTCTG +
Preference number: 4 (lower is better)
Translates to: ILFHGAHGVQSRPRTHCVLHSDG*LLSHRL
Trigger: CAGACGATGACTAAGAAGGCAGCCATCACTGTGCAG...GACGCAGTGGGTCCTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAGAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR GCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGCCCCTCCATCATCAGTaGTGTGCCCATGGCGTAAAA +
Preference number: 4 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLPLHHQ*CAHGVK
Trigger: TTTTACGCCATGGGCACAGCACTGATGATGGAGGGG...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCACCCAGACCACGGAGGTaGAGACGATGCAGAGCAGAG +
Preference number: 4 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQAPRPRR*RRCRAE
Trigger: CTCTGCTCTGCATCGTCTGCACCTCCGTGGTCTGGG...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCAGAAGTCGAGGAGGATaGAGTCGCGGTTGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSRSRGG*SRGCAP
Trigger: GGGAGCACAACCGCGACTGCATCCTCCTCGACTTCT...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp CAGATGGACAGACTAGGGTCCTGGGGAGGACCCAACACTGAGAAGAAAGCAGCAAGCGGTCCATGGCAATaGACAGCTGCCGCATCTGGC +
Preference number: 4 (lower is better)
Translates to: QMDRLGSWGGPNTEKKAASGPWQ*TAAASG
Trigger: GCCAGATGCGGCAGCTGTGCATTGCCATGGACCGCT...TGCTGCTTTCTTCTCAGTGTTGGGTCCTCCCCAGGACCCTAGTCTGTCCATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGGGGCACAGGACATCTTaGATGGAGATGACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLGHRTS*MEMTEQ
Trigger: CTGCTCAGTCATCTCCATCCAAGATGTCCTGTGCCC...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GAGGTCATTCCGCAGCAGGGCCCGGTTATGATTGATCTCTCGCTGCAGGATGATCTTCCACGGAGCTCATaGAGTCCAGTCGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: EVIPQQGPVMIDLSLQDDLPRSS*SPVEAE
Trigger: CTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAG...ATCATCCTGCAGCGAGAGATCAATCATAACCGGGCCCTGCTGCGGAATGACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
CDS-3UTR CCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCACCCAAACATGGCAATaGAGGACAGGAAGTGCCAGA +
Preference number: 4 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSTQTWQ*RTGSAR
Trigger: TCTGGCACTTCCTGTCCTCCATTGCCATGTTTGGGT...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCACCACCGTCTGGTAGGTaGTCACCAGCTGCACCACAG +
Preference number: 4 (lower is better)
Translates to: ILDGNSETSPESFGETGPPPSGR*SPAAPQ
Trigger: CTGTGGTGCAGCTGGTGATCACCTACCAGACGGTGG...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCAAGGTCTTCTTCCTTTaGCTCCAGTTCTCCCAACAG +
Preference number: 4 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSKVFFL*LQFSQQ
Trigger: CTGTTGGGAGAACTGGAGGCAAAGGAAGAAGACCTT...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GGTGACTCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACACGTTTGTCCTTTCGTaGCAGATCAGCCACACAGAG +
Preference number: 4 (lower is better)
Translates to: GDSVNAKDQNGQGPELGDTFVLS*QISHTE
Trigger: CTCTGTGTGGCTGATCTGGCACGAAAGGACAAACGT...GTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTACGTTTGTCCTTTCGTaGCAGATCAGCCACACAGAG +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTTFVLS*QISHTE
Trigger: CTCTGTGTGGCTGATCTGGCACGAAAGGACAAACGT...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTCTGCACCACAGGAAGTaGGTAGAAGACCGCAATGGT +
Preference number: 4 (lower is better)
Translates to: KDQNGQGPELGDSVNAKALHHRK*VEDRNG
Trigger: ACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAG...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTGCAGCAGGTTGCAGATaGCAATTGCCAGCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: KDQNGQGPELGDSVNAKAAAGCR*QLPASR
Trigger: CCTACTTGCTGGCAATTGGCATCTGCAACCTGCTGC...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp CAGATGGACAGACTAGGGTCCTGGGGAGGACCCAACACTGAGAAGAAAGCAGCAAGAAGTCGAGGAGGATaGAGTCGCGGTTGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: QMDRLGSWGGPNTEKKAARSRGG*SRGCAP
Trigger: GGGAGCACAACCGCGACTGCATCCTCCTCGACTTCT...TGCTGCTTTCTTCTCAGTGTTGGGTCCTCCCCAGGACCCTAGTCTGTCCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSGRLGL*PTARSS
Trigger: AGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCC...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTGRLGL*PTARSS
Trigger: AGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCC...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGGGAAGGGATGGGCAGAATGCAAGGCATGAAATGGGACAGGACATTGCCTTCCCTTCCACGGAGCTCATaGAGTCCAGTCGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: REGMGRMQGMKWDRTLPSLPRSS*SPVEAE
Trigger: CTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAG...GGAAGGCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGCCCATCCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCACGCGGTTGTGCTCCCTaGACTCTGCGGGGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: ILDGNSETSPESFGETGPRGCAP*TLRGFS
Trigger: AGAAAACCCCCGCAGAGTCCAGGGAGCACAACCGCG...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GGTGACTCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACACCCAAACATGGCAATaGAGGACAGGAAGTGCCAGA +
Preference number: 4 (lower is better)
Translates to: GDSVNAKDQNGQGPELGDTQTWQ*RTGSAR
Trigger: TCTGGCACTTCCTGTCCTCCATTGCCATGTTTGGGT...GTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGGGAAGGGATGGGCAGAATGCAAGGCATGAAATGGGACAGGACATTGCCTTCCAGCAGGGCCCGGTTATaGTTGATCTCTCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: REGMGRMQGMKWDRTLPSSRARL*LISRCR
Trigger: CCTGCAGCGAGAGATCAATCATAACCGGGCCCTGCT...GGAAGGCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGCCCATCCCTTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GGGCTGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGAGGGTGGAGATGATGTaGATGACGGAGAAGACAATC +
Preference number: 4 (lower is better)
Translates to: GLESRCLATTSNAGQQSWRVEMM*MTEKTI
Trigger: GATTGTCTTCTCCGTCATTCACATCATCTCCACCCT...CCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCGTTGCAGATGCCAATTaGCAGCAAGTAGGAAGCAAA +
Preference number: 4 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSVADAN*QQVGSK
Trigger: TTTGCTTCCTACTTGCTGGCAATTGGCATCTGCAAC...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCGCAGCAGGTTGCAGATaGCAATTGCCAGCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: DQKTQLGLALTAEEPAPSAAGCR*QLPASR
Trigger: CCTACTTGCTGGCAATTGGCATCTGCAACCTGCTGC...GCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGCCCAGACCACGGAGGTaGAGACGATGCAGAGCAGAG +
Preference number: 4 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVPRPRR*RRCRAE
Trigger: CTCTGCTCTGCATCGTCTGCACCTCCGTGGTCTGGG...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AGGGAAGGGATGGGCAGAATGCAAGGCATGAAATGGGACAGGACATTGCCTTCCATGGCAATGCACAGCTaGCGCATCTGGCCAGAGGGA +
Preference number: 4 (lower is better)
Translates to: REGMGRMQGMKWDRTLPSMAMHS*RIWPEG
Trigger: TCCCTCTGGCCAGATGCGGCAGCTGTGCATTGCCAT...GGAAGGCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGCCCATCCCTTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp TCTGTAAACGCCAAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAGGGCACAGGACATCTTaGATGGAGATGACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: SVNAKDQNGQGPELGDSVGHRTS*MEMTEQ
Trigger: CTGCTCAGTCATCTCCATCCAAGATGTCCTGTGCCC...TACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTTGGCGTTTACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCACAGCTCTCCAGTCCTaGGCACAAAATTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSTALQS*AQNCPH
Trigger: GTGTGGACAATTTTGTGCTCAGGACTGGAGAGCTGT...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTTCTTGGAGGTCACCTTaGCAATTACCGAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTSWRSP*QLPSPH
Trigger: GTGTGGACTCGGTAATTGTCAAGGTGACCTCCAAGA...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGCAGGCCTCCTCCTCCGCAGAGGCAACTCCAAGGCTCAGTGCCACCAGGAACTAATGACGTTTTTGTCTaGGTCGATGTCAGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: SRPPPPQRQLQGSVPPGTNDVFV*VDVSQC
Trigger: ACACTGACTGACATCGACTCAGACAAAAACGTCATT...AGTTCCTGGTGGCACTGAGCCTTGGAGTTGCCTCTGCGGAGGAGGAGGCCTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACTGTCCTGGTTCCCTGTaGCATTCACCACCGTCTGGT +
Preference number: 4 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHCPGSL*HSPPSG
Trigger: ACCAGACGGTGGTGAATGTCACAGGGAACCAGGACA...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGAGCAGGGCCCGGTTATaGTTGATCTCTCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVSRARL*LISRCR
Trigger: CCTGCAGCGAGAGATCAATCATAACCGGGCCCTGCT...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACTGTAGGCACTGGCGTTaGTATCTGGGTGCCGCTTCT +
Preference number: 4 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHCRHWR*YLGAAS
Trigger: AGAAGCGGCACCCAGATATCAACGCCAGTGCCTACA...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ACAAAGACCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTGAACTCCGCGTCTTTCTaGGAGACGTTCTTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: TKTQTRLFSQPKSYKNMVNSASF*ETFLGP
Trigger: GGGGCCCAAGAACGTCTCGCAGAAAGACGCGGAGTT...CACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGGTCTTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TGGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACAGAAGGACAAGAATATaGCCAGGCAAAAGAGCATCC +
Preference number: 4 (lower is better)
Translates to: WSEGQPSTKVARGLELGDRRTRI*PGKRAS
Trigger: GGATGCTCTTTTGCCTGGGCATATTCTTGTCCTTCT...GTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCACCTCGTAAGGGGCACTaGCAGGAAATGAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: IRRLNLGWPSLLKSQLQAPRKGH*QEMNQP
Trigger: TGGCTGATTCATTTCCTGGCAGTGCCCCTTACGAGG...TGCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AGGAAGTGCGTAGAAGACCGCAATGGTGGCTATGTTCCTGAGGGGGAAGGGCCAACGTTTGTCCTTTCGTaGCAGATCAGCCACACAGAG +
Preference number: 4 (lower is better)
Translates to: RKCVEDRNGGYVPEGEGPTFVLS*QISHTE
Trigger: CTCTGTGTGGCTGATCTGGCACGAAAGGACAAACGT...TGGCCCTTCCCCCTCAGGAACATAGCCACCATTGCGGTCTTCTACGCACTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
CDS-3UTR GCA 90 bp GGAGTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTGTTGCAGATGCCAATTaGCAGCAAGTAGGAAGCAAA +
Preference number: 4 (lower is better)
Translates to: GVKGNQVPKWPGAWSWVTVADAN*QQVGSK
Trigger: TTTGCTTCCTACTTGCTGGCAATTGGCATCTGCAAC...AGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCACAACAGCCTCCTTCTaGCGGACCACAAACAGCAAA +
Preference number: 4 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSTTASF*RTTNSK
Trigger: TTTGCTGTTTGTGGTCCGCCAGAAGGAGGCTGTTGT...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp GTGAAGGGCAACCAAGTACCAAAGTGGCCAGGGGCCTGGAGCTGGGTGACTCTGTATCAAACTGGAAGTTaGTGTAGTTGGGGCAGACGT +
Preference number: 4 (lower is better)
Translates to: VKGNQVPKWPGAWSWVTLYQTGS*CSWGRR
Trigger: ACGTCTGCCCCAACTACACCAACTTCCAGTTTGATA...CAGAGTCACCCAGCTCCAGGCCCCTGGCCACTTTGGTACTTGGTTGCCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACCACGTGCTCAGTCCCTaGAAGAAGAAGAAGAGCGCG +
Preference number: 4 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHHVLSP*KKKKSA
Trigger: CGCGCTCTTCTTCTTCTTCCAGGGACTGAGCACGTG...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACTTGGATGGAGATGACTaGGCAGGGGAAGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHLDGDD*AGEGLL
Trigger: AAGAAGGCCTTCCCCTGCTCAGTCATCTCCATCCAA...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTTCTGGTACATGCCAATaGAGGCTACATTGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: KDQNGQGPELGDSVNAKASGTCQ*RLHCCP
Trigger: TGGACAACAATGTAGCCTTCATTGGCATGTACCAGA...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTGCACAGTGATGGCTaGCTTCTTAGTCATCGTCTG +
Preference number: 4 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLLHSDG*LLSHRL
Trigger: CAGACGATGACTAAGAAGGCAGCCATCACTGTGCAG...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCCACATAGAAGCTGTTaGTGGGGAAGTCTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLPHRSC*WGSLSA
Trigger: AGCGGAAAGACTTCCCCAGCAACAGCTTCTATGTGG...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GAGAGAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGCCACATAGAAGCTGTTaGTGGGGAAGTCTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: ERRKHIPGAHSWHLEWTWPHRSC*WGSLSA
Trigger: AGCGGAAAGACTTCCCCAGCAACAGCTTCTATGTGG...CCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AGGGAAGGGATGGGCAGAATGCAAGGCATGAAATGGGACAGGACATTGCCTTCCCCTCGTAAGGGGCACTaGCAGGAAATGAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: REGMGRMQGMKWDRTLPSPRKGH*QEMNQP
Trigger: TGGCTGATTCATTTCCTGGCAGTGCCCCTTACGAGG...GGAAGGCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGCCCATCCCTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCACCCCTCCATCATCAGTaGTGTGCCCATGGCGTAAAA +
Preference number: 4 (lower is better)
Translates to: ILDGNSETSPESFGETGPPLHHQ*CAHGVK
Trigger: TTTTACGCCATGGGCACAGCACTGATGATGGAGGGG...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGTGTAAAGGGGCCCGCTaGACTGCCGGATGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPCKGAR*TAGCSL
Trigger: CAGACTGCATCCGGCAGTGCAGCGGGCCCCTTTACA...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp TCTCGCTGCAGGATGATGAGCAGGAAGAGCAGCCCCAGCAGGATGTACCCCAAGAATGACGTTTTTGTCTaGGTCGATGTCAGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: SRCRMMSRKSSPSRMYPKNDVFV*VDVSQC
Trigger: ACACTGACTGACATCGACTCAGACAAAAACGTCATT...CTTGGGGTACATCCTGCTGGGGCTGCTCTTCCTGCTCATCATCCTGCAGCGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160618.8
CDS-3UTR TCA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTCAGCAATCATGTACATaGAGGAGGTATCAAACTGGA +
Preference number: 4 (lower is better)
Translates to: KDQNGQGPELGDSVNAKAQQSCT*RRYQTG
Trigger: TCCAGTTTGATACCTCCTTCATGTACATGATTGCTG...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAAGGGTGGAGATGATGTaGATGACGGAGAAGACAATC +
Preference number: 4 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGRVEMM*MTEKTI
Trigger: GATTGTCTTCTCCGTCATTCACATCATCTCCACCCT...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAAAAGGCGCCCCTTTCTaGTTGTTCAGGACATTCACA +
Preference number: 4 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGKGAPF*LFRTFT
Trigger: TGTGAATGTCCTGAACAAGCAGAAAGGGGCGCCTTT...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCACTGCACAGTGATGGCTaGCTTCTTAGTCATCGTCTG +
Preference number: 4 (lower is better)
Translates to: ILDGNSETSPESFGETGPLHSDG*LLSHRL
Trigger: CAGACGATGACTAAGAAGGCAGCCATCACTGTGCAG...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACACAACAGCCTCCTTCTaGCGGACCACAAACAGCAAA +
Preference number: 4 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHTTASF*RTTNSK
Trigger: TTTGCTGTTTGTGGTCCGCCAGAAGGAGGCTGTTGT...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACGTGCCCTTGATCCACTaGCTCATCTTCCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHVPLIH*LIFHKR
Trigger: CCTTTTGTGGAAGATGAGCCAGTGGATCAAGGGCAC...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp CAAAGGAGCGGTCCTGGTAACTGTAGGAGAGGTCCCCTGAACCTGCGCTTTCAATCTGGTACATGCCAATaGAGGCTACATTGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: QRSGPGNCRRGPLNLRFQSGTCQ*RLHCCP
Trigger: TGGACAACAATGTAGCCTTCATTGGCATGTACCAGA...TTGAAAGCGCAGGTTCAGGGGACCTCTCCTACAGTTACCAGGACCGCTCCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR TCA 90 bp CTTCCCACCAACCCTAGTGCTGGCATCATTCTAGTGGCTGGTGGGATGAGGTGGCAGCAATCATGTACATaGAGGAGGTATCAAACTGGA +
Preference number: 4 (lower is better)
Translates to: LPTNPSAGIILVAGGMRWQQSCT*RRYQTG
Trigger: TCCAGTTTGATACCTCCTTCATGTACATGATTGCTG...CCACCTCATCCCACCAGCCACTAGAATGATGCCAGCACTAGGGTTGGTGGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGCATAGAAGCTGTTGCTaGGGAAGTCTTTCCGCTGCA +
Preference number: 4 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVHRSCC*GSLSAA
Trigger: TGCAGCGGAAAGACTTCCCCAGCAACAGCTTCTATG...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCTATCAAACTGGAAGTTaGTGTAGTTGGGGCAGACGT +
Preference number: 4 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLYQTGS*CSWGRR
Trigger: ACGTCTGCCCCAACTACACCAACTTCCAGTTTGATA...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp GCTTTCAACCAACCCGTCAGTGGATCCGGAACCATTTTCAAAGGAGCCATAGTTTCAGATGTGACAGCCTaGGAGACCAGCACTGACAGT +
Preference number: 4 (lower is better)
Translates to: AFNQPVSGSGTIFKGAIVSDVTA*ETSTDS
Trigger: ACTGTCAGTGCTGGTCTCTCAGGCTGTCACATCTGA...AACTATGGCTCCTTTGAAAATGGTTCCGGATCCACTGACGGGTTGGTTGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR GCA 90 bp ACAAAGACCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTGAAAGGCGCCCCTTTCTaGTTGTTCAGGACATTCACA +
Preference number: 4 (lower is better)
Translates to: TKTQTRLFSQPKSYKNMVKGAPF*LFRTFT
Trigger: TGTGAATGTCCTGAACAAGCAGAAAGGGGCGCCTTT...CACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGGTCTTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp CCTGCGCTTTCAACCAACCCGTCAGTGGATCCGGAACCATTTTCAAAGGAGCCAAGAAGGACAAGAATATaGCCAGGCAAAAGAGCATCC +
Preference number: 4 (lower is better)
Translates to: PALSTNPSVDPEPFSKEPRRTRI*PGKRAS
Trigger: GGATGCTCTTTTGCCTGGGCATATTCTTGTCCTTCT...TGGCTCCTTTGAAAATGGTTCCGGATCCACTGACGGGTTGGTTGAAAGCGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR GCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGCTGCACCACAGGAAGTaGGTAGAAGACCGCAATGGT +
Preference number: 4 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPLHHRK*VEDRNG
Trigger: ACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAG...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGATGGAGGACAGGAAGTaGCAGATATCGTGGTCATCA +
Preference number: 4 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVMEDRK*QISWSS
Trigger: TGATGACCACGATATCTGGCACTTCCTGTCCTCCAT...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp CAGTGGATCCGGAACCATTTTCAAAGGAGCCATAGTTGTAACCCTCGTAAGGGGCATAGAAGCTGTTGCTaGGGAAGTCTTTCCGCTGCA +
Preference number: 4 (lower is better)
Translates to: QWIRNHFQRSHSCNPRKGHRSCC*GSLSAA
Trigger: TGCAGCGGAAAGACTTCCCCAGCAACAGCTTCTATG...CCCCTTACGAGGGTTACAACTATGGCTCCTTTGAAAATGGTTCCGGATCCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR TCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGTCTTGGAGGTCACCTTaGCAATTACCGAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPSWRSP*QLPSPH
Trigger: GTGTGGACTCGGTAATTGTCAAGGTGACCTCCAAGA...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTTCAGATGTGACAGCCTaGGAGACCAGCACTGACAGT +
Preference number: 4 (lower is better)
Translates to: LTQNLAKYWTETQKPALSSDVTA*ETSTDS
Trigger: ACTGTCAGTGCTGGTCTCTCAGGCTGTCACATCTGA...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp TCTTGGCATCTGGAATGGACCTGGTGGAGTGAAGGGCAACCAAGTACCAAAGTGGTACTGGGGCTGGGCTaGAGTGGTATTAAAAGTAAA +
Preference number: 4 (lower is better)
Translates to: SWHLEWTWWSEGQPSTKVVLGLG*SGIKSK
Trigger: TTTACTTTTAATACCACTGCAGCCCAGCCCCAGTAC...CACTTTGGTACTTGGTTGCCCTTCACTCCACCAGGTCCATTCCAGATGCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp GCTTTCAACCAACCCGTCAGTGGATCCGGAACCATTTTCAAAGGAGCCATAGTTCCACATAGAAGCTGTTaGTGGGGAAGTCTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: AFNQPVSGSGTIFKGAIVPHRSC*WGSLSA
Trigger: AGCGGAAAGACTTCCCCAGCAACAGCTTCTATGTGG...AACTATGGCTCCTTTGAAAATGGTTCCGGATCCACTGACGGGTTGGTTGAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR CCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGGTGCCCTTGATCCACTaGCTCATCTTCCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPVPLIH*LIFHKR
Trigger: CCTTTTGTGGAAGATGAGCCAGTGGATCAAGGGCAC...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CCA 90 bp CGTCAGTGGATCCGGAACCATTTTCAAAGGAGCCATAGTTGTAACCCTCGTAAGGTGCCCTTGATCCACTaGCTCATCTTCCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: RQWIRNHFQRSHSCNPRKVPLIH*LIFHKR
Trigger: CCTTTTGTGGAAGATGAGCCAGTGGATCAAGGGCAC...CTTACGAGGGTTACAACTATGGCTCCTTTGAAAATGGTTCCGGATCCACTGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162379.2
CDS-3UTR CCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTACTGGCGTTGATATCTaGGTGCCGCTTCTGGTAGAG +
Preference number: 4 (lower is better)
Translates to: LTQNLAKYWTETQKPALSTGVDI*VPLLVE
Trigger: CTCTACCAGAAGCGGCACCCAGATATCAACGCCAGT...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGTCTGGTACATGCCAATaGAGGCTACATTGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPSGTCQ*RLHCCP
Trigger: TGGACAACAATGTAGCCTTCATTGGCATGTACCAGA...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR TCA 90 bp AACCGTAGCATGGAGGAACATAGAACAAAGCTCAGAAACAAAGACCCAGACCCGAATGACGTTTTTGTCTaGGTCGATGTCAGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: NRSMEEHRTKLRNKDPDPNDVFV*VDVSQC
Trigger: ACACTGACTGACATCGACTCAGACAAAAACGTCATT...CGGGTCTGGGTCTTTGTTTCTGAGCTTTGTTCTATGTTCCTCCATGCTACGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR GCA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTAGAAGGACAAGAATATaGCCAGGCAAAAGAGCATCC +
Preference number: 4 (lower is better)
Translates to: LTQNLAKYWTETQKPALSRRTRI*PGKRAS
Trigger: GGATGCTCTTTTGCCTGGGCATATTCTTGTCCTTCT...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CCA 90 bp CCGCGTAGGTGCGCTCAAACTCCGCGTCTTTCTGCGAGACGTTCTTaGGCCCCAGGGCCCCCAGGTGGCTCTCGACGGAGGCCACCAAGA +
Preference number: 5 (lower is better)
Translates to: PRRCAQTPRLSARRS*APGPPGGSRRRPPR
Trigger: TCTTGGTGGCCTCCGTCGAGAGCCACCTGGGGGCCCTGGGGCCCAAGAACGTCTCGCAGAAAGACGCGGAGTTTGAGCGCACCTACGCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS GCA 90 bp CGAGGACCCACTGCGTCAAAGGAGCGGTCCATGGCAATGCACAGCTaGCGCATCTGGCCAGAGGGAAGGCGCCGCTTGAACTGGTCGTGC +
Preference number: 5 (lower is better)
Translates to: RGPTASKERSMAMHS*RIWPEGRRRLNWSC
Trigger: GCACGACCAGTTCAAGCGGCGCCTTCCCTCTGGCCAGATGCGGCAGCTGTGCATTGCCATGGACCGCTCCTTTGACGCAGTGGGTCCTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS-3UTR CAA 90 bp AGCAGGCCTCCTCCTCCGCAGAGGCAACTCCAAGGCTCAGTGCCACCAGGAACTTTGAAGGCGCTGAGGTaGCCCAGCGGGTGGGCACAG +
Preference number: 5 (lower is better)
Translates to: SRPPPPQRQLQGSVPPGTLKALR*PSGWAQ
Trigger: CTGTGCCCACCCGCTGGGCAACCTCAGCGCCTTCAA...AGTTCCTGGTGGCACTGAGCCTTGGAGTTGCCTCTGCGGAGGAGGAGGCCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS TCA 90 bp TGGCAATGCACAGCTGCCGCATCTGGCCAGAGGGAAGGCGCCGCTTaGACTGGTCGTGCCCCTGGTAACTGTAGGAGAGGTCCCCTGAAC +
Preference number: 5 (lower is better)
Translates to: WQCTAAASGQREGAA*TGRAPGNCRRGPLN
Trigger: GTTCAGGGGACCTCTCCTACAGTTACCAGGGGCACGACCAGTTCAAGCGGCGCCTTCCCTCTGGCCAGATGCGGCAGCTGTGCATTGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS-3UTR CAA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTTTGAAGGCGCTGAGGTaGCCCAGCGGGTGGGCACAG +
Preference number: 5 (lower is better)
Translates to: KDQNGQGPELGDSVNAKALKALR*PSGWAQ
Trigger: CTGTGCCCACCCGCTGGGCAACCTCAGCGCCTTCAA...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCGAGGGAAGGCGCCGCTaGAACTGGTCGTGCCCCTGG +
Preference number: 5 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSEGRRR*NWSCPW
Trigger: CCAGGGGCACGACCAGTTCAAGCGGCGCCTTCCCTC...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCTTCTGCGAGACGTTCTaGGGCCCCAGGGCCCCCAGG +
Preference number: 5 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLFCETF*GPRAPR
Trigger: CCTGGGGGCCCTGGGGCCCAAGAACGTCTCGCAGAA...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 90 bp ACAGCCTCCTTCTGGCGGACCACAAACAGCAAAGGCGCCCCTTTCTaGTTGTTCAGGACATTCACAGACACTCGCACACCCTCGGTCCGG +
Preference number: 5 (lower is better)
Translates to: TASFWRTTNSKGAPF*LFRTFTDTRTPSVR
Trigger: CCGGACCGAGGGTGTGCGAGTGTCTGTGAATGTCCTGAACAAGCAGAAAGGGGCGCCTTTGCTGTTTGTGGTCCGCCAGAAGGAGGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 90 bp CGATGTCAGTCAGTGTGTCGTAGTCATCCTCTTCCACGGAGCTCATaGAGTCCAGTCGAGGCCGAGGACCCACTGCGTCAAAGGAGCGGT +
Preference number: 5 (lower is better)
Translates to: RCQSVCRSHPLPRSS*SPVEAEDPLRQRSG
Trigger: ACCGCTCCTTTGACGCAGTGGGTCCTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAGAGGATGACTACGACACACTGACTGACATCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000161606.8
ENSMUST00000162072.8
ENSMUST00000162529.8
CDS CCA 90 bp GGTCATCAAAGAAGTCGAGGAGGATGCAGTCGCGGTTGTGCTCCCTaGACTCTGCGGGGGTTTTCTGCCACGTGCTCAGTCCCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: GHQRSRGGCSRGCAP*TLRGFSATCSVPGR
Trigger: TCTTCCAGGGACTGAGCACGTGGCAGAAAACCCCCGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp GAGAGAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGAGGATGCAGTCGCGGTaGTGCTCCCTGGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: ERRKHIPGAHSWHLEWTWRMQSR*CSLDSA
Trigger: CGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCT...CCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAAGGATGCAGTCGCGGTaGTGCTCCCTGGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGRMQSR*CSLDSA
Trigger: CGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCT...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS TCA 90 bp CCGCTTGAACTGGTCGTGCCCCTGGTAACTGTAGGAGAGGTCCCCTaGACCTGCGCTTTCAACCAACCCGTCAGTGGATCCGGAACCATT +
Preference number: 5 (lower is better)
Translates to: PLELVVPLVTVGEVP*TCAFNQPVSGSGTI
Trigger: AATGGTTCCGGATCCACTGACGGGTTGGTTGAAAGCGCAGGTTCAGGGGACCTCTCCTACAGTTACCAGGGGCACGACCAGTTCAAGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS CCA 90 bp CCTCGAAGGATTAGGGGCACCTGGAAGGACACAACAGCCTCCTTCTaGCGGACCACAAACAGCAAAGGCGCCCCTTTCTGCTTGTTCAGG +
Preference number: 5 (lower is better)
Translates to: PRRIRGTWKDTTASF*RTTNSKGAPFCLFR
Trigger: CCTGAACAAGCAGAAAGGGGCGCCTTTGCTGTTTGTGGTCCGCCAGAAGGAGGCTGTTGTGTCCTTCCAGGTGCCCCTAATCCTTCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS-3UTR CAA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTAAGGCCGTGTTCCCTTaGCCAAACACCACGCCCAGA +
Preference number: 5 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTKAVFP*PNTTPR
Trigger: TCTGGGCGTGGTGTTTGGCAAAGGGAACACGGCCTT...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp GATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCAAGGCCGTGTTCCCTTaGCCAAACACCACGCCCAGA +
Preference number: 5 (lower is better)
Translates to: DQKTQLGLALTAEEPAPSKAVFP*PNTTPR
Trigger: TCTGGGCGTGGTGTTTGGCAAAGGGAACACGGCCTT...GCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp AGCAGGCCTCCTCCTCCGCAGAGGCAACTCCAAGGCTCAGTGCCACCAGGAACTGGTTGCAGATGCCAATaGCCAGCAAGTAGGAAGCAA +
Preference number: 5 (lower is better)
Translates to: SRPPPPQRQLQGSVPPGTGCRCQ*PASRKQ
Trigger: TTGCTTCCTACTTGCTGGCAATTGGCATCTGCAACC...AGTTCCTGGTGGCACTGAGCCTTGGAGTTGCCTCTGCGGAGGAGGAGGCCTGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 90 bp GGCAGGCTCGGTCTATGGCCAACAGCAAGGTCTTCTTCCTTTGCCTaGAGGAATTCAGGGGACAACTCCAGTTCTCCCAACAGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: GRLGLWPTARSSSFA*RNSGDNSSSPNRPA
Trigger: TGCTGGCCTGTTGGGAGAACTGGAGTTGTCCCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS GCA 90 bp TCTGGGCAGGCTCGGTCTATGGCCAACAGCAAGGTCTTCTTCCTTTaGCTGCAGGAATTCAGGGGACAACTCCAGTTCTCCCAACAGGCC +
Preference number: 5 (lower is better)
Translates to: SGQARSMANSKVFFL*LQEFRGQLQFSQQA
Trigger: GGCCTGTTGGGAGAACTGGAGTTGTCCCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS CCA 90 bp TATGGAGGGGTGAGCCAAGGCCACTTTCTGGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCTTCCTTTGCCTGCAGGAATTCAGGG +
Preference number: 5 (lower is better)
Translates to: YGGVSQGHFLGRLGL*PTARSSSFACRNSG
Trigger: CCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAAAGTGGCCTTGGCTCACCCCTCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS-3UTR CAA 90 bp TCCAAGCACAGGTCAGGGAGGAGGGTCGTACCTAGGCCCCTTGCAGGCCTTAGCAGGATGTACCCCAAGTaGCTGAGGATGTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: SKHRSGRRVVPRPLAGLSRMYPK*LRMLLK
Trigger: CTTCAACAACATCCTCAGCAACTTGGGGTACATCCT...GCTAAGGCCTGCAAGGGGCCTAGGTACGACCCTCCTCCCTGACCTGTGCTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTGCAGCCAGCGACCAGTaGATAATGTTGCCCATGACC +
Preference number: 5 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTAASDQ*IMLPMT
Trigger: GGTCATGGGCAACATTATCAACTGGTCGCTGGCTGC...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 90 bp CACGCCCAGAACGGAGAAGAAGATGACGATGGCCAAGCAGGCATATaGACTGTAGGCACTGGCGTTGATATCTGGGTGCCGCTTCTGGTA +
Preference number: 5 (lower is better)
Translates to: HAQNGEEDDDGQAGI*TVGTGVDIWVPLLV
Trigger: TACCAGAAGCGGCACCCAGATATCAACGCCAGTGCCTACAGTGCATATGCCTGCTTGGCCATCGTCATCTTCTTCTCCGTTCTGGGCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTTTCTGCGAGACGTTCTaGGGCCCCAGGGCCCCCAGG +
Preference number: 5 (lower is better)
Translates to: LTQNLAKYWTETQKPALSFCETF*GPRAPR
Trigger: CCTGGGGGCCCTGGGGCCCAAGAACGTCTCGCAGAA...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp AGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCCTCCCAGGGGAAGGCCTTCTaGGAGGTCACCTTGACAATT +
Preference number: 5 (lower is better)
Translates to: RRKQQFGQCLGNAEQASSQGKAF*EVTLTI
Trigger: AATTGTCAAGGTGACCTCCAAGAAGGCCTTCCCCTG...GGAGGAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCTTGCTGAGGATGTTGTaGAAGGCGCTGAGGTTGCCC +
Preference number: 5 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLLLRML*KALRLP
Trigger: GGGCAACCTCAGCGCCTTCAACAACATCCTCAGCAA...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS TCA 90 bp CCCACCAACATAGGCCTCAGATGTGACAGCCTGAGAGACCAGCACTaGCAGTGTTTTCTGACGGTGCCCTTGATCCACTGGCTCATCTTC +
Preference number: 5 (lower is better)
Translates to: PTNIGLRCDSLRDQH*QCFLTVPLIHWLIF
Trigger: GAAGATGAGCCAGTGGATCAAGGGCACCGTCAGAAAACACTGTCAGTGCTGGTCTCTCAGGCTGTCACATCTGAGGCCTATGTTGGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
ENSMUST00000162379.2
ENSMUST00000162529.8
CDS-3UTR CAA 90 bp AAGGACCAGAATGGCCAGGGGCCAGAGCTGGGTGACTCTGTAAACGCCAAGGCTAGTTCGTTCCACTTTTaGGTAGAGGTACTTCCGCTG +
Preference number: 5 (lower is better)
Translates to: KDQNGQGPELGDSVNAKASSFHF*VEVLPL
Trigger: CAGCGGAAGTACCTCTACCAAAAAGTGGAACGAACT...AGCCTTGGCGTTTACAGAGTCACCCAGCTCTGGCCCCTGGCCATTCTGGTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAGTCCTGAGCACAAAATaGTCCACACGGTTGACTCGG +
Preference number: 5 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGVLSTK*STRLTR
Trigger: CCGAGTCAACCGTGTGGACAATTTTGTGCTCAGGAC...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp AGGGAAGGGATGGGCAGAATGCAAGGCATGAAATGGGACAGGACATTGCCTTCCTTGCTGAGGATGTTGTaGAAGGCGCTGAGGTTGCCC +
Preference number: 5 (lower is better)
Translates to: REGMGRMQGMKWDRTLPSLLRML*KALRLP
Trigger: GGGCAACCTCAGCGCCTTCAACAACATCCTCAGCAA...GGAAGGCAATGTCCTGTCCCATTTCATGCCTTGCATTCTGCCCATCCCTTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp CTTCCCACCAACCCTAGTGCTGGCATCATTCTAGTGGCTGGTGGGATGAGGTGGAAGTTGCTGAGGATGTaGTTGAAGGCGCTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: LPTNPSAGIILVAGGMRWKLLRM*LKALRL
Trigger: CAACCTCAGCGCCTTCAACAACATCCTCAGCAACTT...CCACCTCATCCCACCAGCCACTAGAATGATGCCAGCACTAGGGTTGGTGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp GATCAGAAGACTCAACTTGGGCTGGCCCTCACTGCTGAAGAGCCAGCTCCAAGCGACCAGTTGATAATGTaGCCCATGACCAGAAGCACC +
Preference number: 5 (lower is better)
Translates to: DQKTQLGLALTAEEPAPSDQLIM*PMTRST
Trigger: GGTGCTTCTGGTCATGGGCAACATTATCAACTGGTC...GCTTGGAGCTGGCTCTTCAGCAGTGAGGGCCAGCCCAAGTTGAGTCTTCTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp TGGAATCTCGCTGTCTTGCCACGACATCCAATGCTGGGCAGCAGAGCTGGGACTTTCTTGGAGGTCACCTaGACAATTACCGAGTCCACA +
Preference number: 5 (lower is better)
Translates to: WNLAVLPRHPMLGSRAGTFLEVT*TITEST
Trigger: TGTGGACTCGGTAATTGTCAAGGTGACCTCCAAGAA...AGTCCCAGCTCTGCTGCCCAGCATTGGATGTCGTGGCAAGACAGCGAGATTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS TCA 90 bp GTCCAGATCATAGACAGGGCACAGGACATCTTGGATGGAGATGACTaGGCAGGGGAAGGCCTTCTTGGAGGTCACCTTGACAATTACCGA +
Preference number: 5 (lower is better)
Translates to: VQIIDRAQDILDGDD*AGEGLLGGHLDNYR
Trigger: TCGGTAATTGTCAAGGTGACCTCCAAGAAGGCCTTCCCCTGCTCAGTCATCTCCATCCAAGATGTCCTGTGCCCTGTCTATGATCTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS-3UTR CAA 90 bp ACTGAGAAGAAAGCAGCAATTTGGCCAGTGTCTGGGGAATGCGGAGCAGGCCTCAGTTCGTTCCACTTTTaGGTAGAGGTACTTCCGCTG +
Preference number: 5 (lower is better)
Translates to: TEKKAAIWPVSGECGAGLSSFHF*VEVLPL
Trigger: CAGCGGAAGTACCTCTACCAAAAAGTGGAACGAACT...GAGGCCTGCTCCGCATTCCCCAGACACTGGCCAAATTGCTGCTTTCTTCTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp ACAAAGACCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTGCAGGGGAAGGCCTTCTaGGAGGTCACCTTGACAATT +
Preference number: 5 (lower is better)
Translates to: TKTQTRLFSQPKSYKNMVQGKAF*EVTLTI
Trigger: AATTGTCAAGGTGACCTCCAAGAAGGCCTTCCCCTG...CACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGGTCTTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp GAAGGAAACACATTCCTGGGGCCCACTCTTGGCATCTGGAATGGACCTGGTGGAAGGATGTACCCCAAGTaGCTGAGGATGTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: EGNTFLGPTLGIWNGPGGRMYPK*LRMLLK
Trigger: CTTCAACAACATCCTCAGCAACTTGGGGTACATCCT...TCCACCAGGTCCATTCCAGATGCCAAGAGTGGGCCCCAGGAATGTGTTTCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp AGCTACAGACCCAGGGAGAGCTTAGGTCCTGGTGATGGACAAAGAATCAGGCACGACCAGTTGATAATGTaGCCCATGACCAGAAGCACC +
Preference number: 5 (lower is better)
Translates to: SYRPRESLGPGDGQRIRHDQLIM*PMTRST
Trigger: GGTGCTTCTGGTCATGGGCAACATTATCAACTGGTC...GTGCCTGATTCTTTGTCCATCACCAGGACCTAAGCTCTCCCTGGGTCTGTAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCAGGTTGCAGATGCCAATaGCCAGCAAGTAGGAAGCAA +
Preference number: 5 (lower is better)
Translates to: ILDGNSETSPESFGETGPGCRCQ*PASRKQ
Trigger: TTGCTTCCTACTTGCTGGCAATTGGCATCTGCAACC...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 90 bp ATTCACCACCGTCTGGTAGGTGATCACCAGCTGCACCACAGGAAGTaGGTAGAAGACCGCAATGGTGGCTATGTTCCAGAAGTAAATCTG +
Preference number: 5 (lower is better)
Translates to: IHHRLVGDHQLHHRK*VEDRNGGYVPEVNL
Trigger: CAGATTTACTTCTGGAACATAGCCACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAGCTGGTGATCACCTACCAGACGGTGGTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 90 bp AGCAAAACCAGGAAGGACCCAAACATGGCAATGGAGGACAGGAAGTaGCAGATATCGTGGTCATCAAAGAAGTCGAGGAGGATGCAGTCG +
Preference number: 5 (lower is better)
Translates to: SKTRKDPNMAMEDRK*QISWSSKKSRRMQS
Trigger: CGACTGCATCCTCCTCGACTTCTTTGATGACCACGATATCTGGCACTTCCTGTCCTCCATTGCCATGTTTGGGTCCTTCCTGGTTTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000159033.2
CDS-3UTR CAA 90 bp ATACTGGACGGAAACTCAGAAACCAGCCCTGAGTCCTTTGGTGAGACAGGGCCATTCTTGGAGGTCACCTaGACAATTACCGAGTCCACA +
Preference number: 5 (lower is better)
Translates to: ILDGNSETSPESFGETGPFLEVT*TITEST
Trigger: TGTGGACTCGGTAATTGTCAAGGTGACCTCCAAGAA...TGGCCCTGTCTCACCAAAGGACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS-3UTR CAA 90 bp ACAAAGACCCAGACCCGCCTCTTCTCCCAGCCCAAGAGCTATAAAAACATGGTGAAGTTGCTGAGGATGTaGTTGAAGGCGCTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: TKTQTRLFSQPKSYKNMVKLLRM*LKALRL
Trigger: CAACCTCAGCGCCTTCAACAACATCCTCAGCAACTT...CACCATGTTTTTATAGCTCTTGGGCTGGGAGAAGAGGCGGGTCTGGGTCTTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS TCA 90 bp ATTGTCCACACGGTTGACTCGGAGCTGGTAAGTGGTATTGACGGGTaGCAGGGTAGACACGTCCACATAGAAAAACTGGATCTCAGACTC +
Preference number: 5 (lower is better)
Translates to: IVHTVDSELVSGIDG*QGRHVHIEKLDLRL
Trigger: GAGTCTGAGATCCAGTTTTTCTATGTGGACGTGTCTACCCTGTCACCCGTCAATACCACTTACCAGCTCCGAGTCAACCGTGTGGACAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 90 bp ACCGAGTCCACACCATCAGGAAACTCGTATTTGAAGTACTGGGGCTaGGCTGCAGTGGTATTAAAAGTAAACAGCTCTCCAGTCCTGAGC +
Preference number: 5 (lower is better)
Translates to: TESTPSGNSYLKYWG*AAVVLKVNSSPVLS
Trigger: GCTCAGGACTGGAGAGCTGTTTACTTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGATGGTGTGGACTCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS-3UTR CAA 90 bp CTAACACAGAACTTGGCTAAATACTGGACGGAAACTCAGAAACCAGCCCTGAGTGCAGCCAGCGACCAGTaGATAATGTTGCCCATGACC +
Preference number: 5 (lower is better)
Translates to: LTQNLAKYWTETQKPALSAASDQ*IMLPMT
Trigger: GGTCATGGGCAACATTATCAACTGGTCGCTGGCTGC...ACTCAGGGCTGGTTTCTGAGTTTCCGTCCAGTATTTAGCCAAGTTCTGTGTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS TCA 90 bp ATCAGCCACACAGAGGTATTGCTTGGTTCGAATGACGTTTTTGTCTaGGTCGATGTCAGTCAGTGTGTCGTAGTCATCCTCTTCCACGGA +
Preference number: 5 (lower is better)
Translates to: ISHTEVLLGSNDVFV*VDVSQCVVVILFHG
Trigger: TCCGTGGAAGAGGATGACTACGACACACTGACTGACATCGACTCAGACAAAAACGTCATTCGAACCAAGCAATACCTCTGTGTGGCTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000162072.8
CDS GCA 90 bp GTCCACACCATCAGGAAACTCGTATTTGAAGTACTGGGGCTGGGCTaGAGTGGTATTAAAAGTAAACAGCTCTCCAGTCCTGAGCACAAA +
Preference number: 5 (lower is better)
Translates to: VHTIRKLVFEVLGLG*SGIKSKQLSSPEHK
Trigger: TTTGTGCTCAGGACTGGAGAGCTGTTTACTTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGATGGTGTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 90 bp ACAATTACCGAGTCCACACCATCAGGAAACTCGTATTTGAAGTACTaGGGCTGGGCTGCAGTGGTATTAAAAGTAAACAGCTCTCCAGTC +
Preference number: 5 (lower is better)
Translates to: TITESTPSGNSYLKY*GWAAVVLKVNSSPV
Trigger: GACTGGAGAGCTGTTTACTTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGATGGTGTGGACTCGGTAATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 72 bp TGCGCTCAAACTCCGCGTCTTTCTGCGAGACGTTCTTaGGCCCCAGGGCCCCCAGGTGGCTCTCGACGGAGG +
Preference number: 6 (lower is better)
Translates to: CAQTPRLSARRS*APGPPGGSRRR
Trigger: CCTCCGTCGAGAGCCACCTGGGGGCCCTGGGGCCCAAGAACGTCTCGCAGAAAGACGCGGAGTTTGAGCGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS TCA 72 bp AGACCCGGGCGTGACCTGAGGCTGGGCCGCACTGCCTaGGACATAGGGCAGTTTCCTGGTGTCTATGGAGGG +
Preference number: 6 (lower is better)
Translates to: RPGRDLRLGRTA*DIGQFPGVYGG
Trigger: CCCTCCATAGACACCAGGAAACTGCCCTATGTCTCAGGCAGTGCGGCCCAGCCTCAGGTCACGCCCGGGTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160138.8
ENSMUST00000162072.8
CDS CCA 72 bp AAGGAGCGGTCCATGGCAATGCACAGCTGCCGCATCTaGCCAGAGGGAAGGCGCCGCTTGAACTGGTCGTGC +
Preference number: 6 (lower is better)
Translates to: KERSMAMHSCRI*PEGRRRLNWSC
Trigger: GCACGACCAGTTCAAGCGGCGCCTTCCCTCTGGCCAGATGCGGCAGCTGTGCATTGCCATGGACCGCTCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS CCA 72 bp GAGGCCGAGGACCCACTGCGTCAAAGGAGCGGTCCATaGCAATGCACAGCTGCCGCATCTGGCCAGAGGGAA +
Preference number: 6 (lower is better)
Translates to: EAEDPLRQRSGP*QCTAAASGQRE
Trigger: TTCCCTCTGGCCAGATGCGGCAGCTGTGCATTGCCATGGACCGCTCCTTTGACGCAGTGGGTCCTCGGCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS TCA 72 bp ACAGCTGCCGCATCTGGCCAGAGGGAAGGCGCCGCTTaGACTGGTCGTGCCCCTGGTAACTGTAGGAGAGGT +
Preference number: 6 (lower is better)
Translates to: TAAASGQREGAA*TGRAPGNCRRG
Trigger: ACCTCTCCTACAGTTACCAGGGGCACGACCAGTTCAAGCGGCGCCTTCCCTCTGGCCAGATGCGGCAGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS GCA 72 bp ACTGCGTCAAAGGAGCGGTCCATGGCAATGCACAGCTaGCGCATCTGGCCAGAGGGAAGGCGCCGCTTGAAC +
Preference number: 6 (lower is better)
Translates to: TASKERSMAMHS*RIWPEGRRRLN
Trigger: GTTCAAGCGGCGCCTTCCCTCTGGCCAGATGCGGCAGCTGTGCATTGCCATGGACCGCTCCTTTGACGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS GCA 72 bp GGAGCTCATGGAGTCCAGTCGAGGCCGAGGACCCACTaGGTCAAAGGAGCGGTCCATGGCAATGCACAGCTG +
Preference number: 6 (lower is better)
Translates to: GAHGVQSRPRTH*VKGAVHGNAQL
Trigger: CAGCTGTGCATTGCCATGGACCGCTCCTTTGACGCAGTGGGTCCTCGGCCTCGACTGGACTCCATGAGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS CCA 72 bp AGAAGTCGAGGAGGATGCAGTCGCGGTTGTGCTCCCTaGACTCTGCGGGGGTTTTCTGCCACGTGCTCAGTC +
Preference number: 6 (lower is better)
Translates to: RSRGGCSRGCAP*TLRGFSATCSV
Trigger: GACTGAGCACGTGGCAGAAAACCCCCGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CCA 72 bp GTTGTGCTCCCTGGACTCTGCCACGTGCTCAGTCCCTaGAAGAAGAAGAAGAGCGCGAAGCCCCAGACCACG +
Preference number: 6 (lower is better)
Translates to: VVLPGLCHVLSP*KKKKSAKPQTT
Trigger: CGTGGTCTGGGGCTTCGCGCTCTTCTTCTTCTTCCAGGGACTGAGCACGTGGCAGAGTCCAGGGAGCACAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159033.2
CDS TCA 72 bp CTGGTCGTGCCCCTGGTAACTGTAGGAGAGGTCCCCTaGACCTGCGCTTTCAACCAACCCGTCAGTGGATCC +
Preference number: 6 (lower is better)
Translates to: LVVPLVTVGEVP*TCAFNQPVSGS
Trigger: GGATCCACTGACGGGTTGGTTGAAAGCGCAGGTTCAGGGGACCTCTCCTACAGTTACCAGGGGCACGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114573.9
ENSMUST00000161606.8
ENSMUST00000162072.8
CDS GCA 72 bp GCCAGATATCGTGGTCATCAAAGAAGTCGAGGAGGATaGAGTCGCGGTTGTGCTCCCTGGACTCTGCGGGGG +
Preference number: 6 (lower is better)
Translates to: ARYRGHQRSRGG*SRGCAPWTLRG
Trigger: CCCCCGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGACCACGATATCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CCA 72 bp CCCGGGCGTGACCACTTTCTGGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCTTCCTTTGCCTCCAGT +
Preference number: 6 (lower is better)
Translates to: PGRDHFLGRLGL*PTARSSSFASS
Trigger: ACTGGAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAAAGTGGTCACGCCCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000161042.2
CDS CCA 72 bp GCTGGGCCGCACTGCCTGAGACATAGGGCAGTTTCCTaGTGTCTATGGAGGGGTGAGCCAAGGCCACTTTCT +
Preference number: 6 (lower is better)
Translates to: AGPHCLRHRAVS*CLWRGEPRPLS
Trigger: AGAAAGTGGCCTTGGCTCACCCCTCCATAGACACCAGGAAACTGCCCTATGTCTCAGGCAGTGCGGCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160138.8
ENSMUST00000162072.8
CDS CAA 90 bp GCCTCCTTCTGGCGGACCACAAACAGCAAAGGCGCCCCTTTCTGCTaGTTCAGGACATTCACAGACACTCGCACACCCTCGGTCCGGTTG +
Preference number: 6 (lower is better)
Translates to: ASFWRTTNSKGAPFC*FRTFTDTRTPSVRL
Trigger: CAACCGGACCGAGGGTGTGCGAGTGTCTGTGAATGTCCTGAACAAGCAGAAAGGGGCGCCTTTGCTGTTTGTGGTCCGCCAGAAGGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS GCA 72 bp TCATCAAAGAAGTCGAGGAGGATGCAGTCGCGGTTGTaGTCCCTGGACTCTGCCACGTGCTCAGTCCCTGGA +
Preference number: 6 (lower is better)
Translates to: SSKKSRRMQSRL*SLDSATCSVPG
Trigger: TCCAGGGACTGAGCACGTGGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159033.2
CDS CCA 72 bp ATTAGGGGCACCTGGAAGGACACAACAGCCTCCTTCTaGCGGACCACAAACAGCAAAGGCGCCCCTTTCTGC +
Preference number: 6 (lower is better)
Translates to: IRGTWKDTTASF*RTTNSKGAPFC
Trigger: GCAGAAAGGGGCGCCTTTGCTGTTTGTGGTCCGCCAGAAGGAGGCTGTTGTGTCCTTCCAGGTGCCCCTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 72 bp TCAGTGTGTCGTAGTCATCCTCTTCCACGGAGCTCATaGAGTCCAGTCGAGGCCGAGGACCCACTGCGTCAA +
Preference number: 6 (lower is better)
Translates to: SVCRSHPLPRSS*SPVEAEDPLRQ
Trigger: TTGACGCAGTGGGTCCTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAGAGGATGACTACGACACACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000161606.8
ENSMUST00000162072.8
ENSMUST00000162529.8
CDS CCA 72 bp GTGAGCCAAGGCCACTTTCTGGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCTTCCTTTGCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: VSQGHFLGRLGL*PTARSSSFACR
Trigger: CCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAAAGTGGCCTTGGCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS CCA 72 bp CACTGCCTGAGACATAGGGCAGTTTCCTGGTGTCTATaGAGGGGTGAGCCAAGGCCACTTTCTGGGCAGGCT +
Preference number: 6 (lower is better)
Translates to: HCLRHRAVSWCL*RGEPRPLSGQA
Trigger: AGCCTGCCCAGAAAGTGGCCTTGGCTCACCCCTCCATAGACACCAGGAAACTGCCCTATGTCTCAGGCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160138.8
ENSMUST00000162072.8
CDS CCA 72 bp CAAGACCCGGGCGTGACCAAGGAGAGAAGCACTTTCTaGGCAGGCTCGGTCTATGGCCAACAGCAAGGTCTT +
Preference number: 6 (lower is better)
Translates to: QDPGVTKERSTF*AGSVYGQQQGL
Trigger: AAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAAAGTGCTTCTCTCCTTGGTCACGCCCGGGTCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161606.8
ENSMUST00000162529.8
CDS CAA 72 bp ACGGAGGTGCAGACGATGCAGAGCAGAGGGATGAGCTaGATCCTCTCGCCGCTCCGGAGCTTCATGATGATG +
Preference number: 6 (lower is better)
Translates to: TEVQTMQSRGMS*ILSPLRSFMMM
Trigger: CATCATCATGAAGCTCCGGAGCGGCGAGAGGATCAAGCTCATCCCTCTGCTCTGCATCGTCTGCACCTCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CAA 72 bp TGGTCATCAAAGAAGTCGAGGAGGATGCAGTCGCGGTaGTGCTCCCTGGACTCTGCGGGGGTTTTCTGCCAC +
Preference number: 6 (lower is better)
Translates to: WSSKKSRRMQSR*CSLDSAGVFCH
Trigger: GTGGCAGAAAACCCCCGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CAA 72 bp TGGTCATCAAAGAAGTCGAGGAGGATGCAGTCGCGGTaGTGCTCCCTGGACTCTGCCACGTGCTCAGTCCCT +
Preference number: 6 (lower is better)
Translates to: WSSKKSRRMQSR*CSLDSATCSVP
Trigger: AGGGACTGAGCACGTGGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159033.2
CDS CAA 90 bp CAGATATCGTGGTCATCAAAGAAGTCGAGGAGGATGCAGTCGCGGTaGTGCTCCCTGGACTCTGCGGGGGTTTTCTGCCACGTGCTCAGT +
Preference number: 6 (lower is better)
Translates to: QISWSSKKSRRMQSR*CSLDSAGVFCHVLS
Trigger: ACTGAGCACGTGGCAGAAAACCCCCGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGACCACGATATCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 72 bp GCCAGATATCGTGGTCATCAAAGAAGTCGAGGAGGATaGAGTCGCGGTTGTGCTCCCTGGACTCTGCCACGT +
Preference number: 6 (lower is better)
Translates to: ARYRGHQRSRGG*SRGCAPWTLPR
Trigger: ACGTGGCAGAGTCCAGGGAGCACAACCGCGACTGCATCCTCCTCGACTTCTTTGATGACCACGATATCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159033.2
CDS CCA 72 bp GTGAGCCAAGGCCACTTTCTGGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCTTCCTTTGCCTCCAGT +
Preference number: 6 (lower is better)
Translates to: VSQGHFLGRLGL*PTARSSSFASS
Trigger: ACTGGAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAAAGTGGCCTTGGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162072.8
CDS CAA 72 bp TGGCGGACCACAAACAGCAAAGGCGCCCCTTTCTGCTaGTTCAGGACATTCACAGACACTCGCACACCCTCG +
Preference number: 6 (lower is better)
Translates to: WRTTNSKGAPFC*FRTFTDTRTPS
Trigger: CGAGGGTGTGCGAGTGTCTGTGAATGTCCTGAACAAGCAGAAAGGGGCGCCTTTGCTGTTTGTGGTCCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CAA 72 bp GGGCGCATGATGAGTCCGTATGCAGCCAGCGACCAGTaGATAATGTTGCCCATGACCAGAAGCACCATGCGG +
Preference number: 6 (lower is better)
Translates to: GRMMSPYAASDQ*IMLPMTRSTMR
Trigger: CCGCATGGTGCTTCTGGTCATGGGCAACATTATCAACTGGTCGCTGGCTGCATACGGACTCATCATGCGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CAA 90 bp TTCTGGGCAGGCTCGGTCTATGGCCAACAGCAAGGTCTTCTTCCTTaGCCTGCAGGAATTCAGGGGACAACTCCAGTTCTCCCAACAGGC +
Preference number: 6 (lower is better)
Translates to: FWAGSVYGQQQGLLP*PAGIQGTTPVLPTG
Trigger: GCCTGTTGGGAGAACTGGAGTTGTCCCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS TCA 72 bp ATAGACAGGGCACAGGACATCTTGGATGGAGATGACTaGGCAGGGGAAGGCCTTCTTGGAGGTCACCTTGAC +
Preference number: 6 (lower is better)
Translates to: IDRAQDILDGDD*AGEGLLGGHLD
Trigger: GTCAAGGTGACCTCCAAGAAGGCCTTCCCCTGCTCAGTCATCTCCATCCAAGATGTCCTGTGCCCTGTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS GCA 72 bp CGTCTGGTAGGTGATCACCAGCTGCACCACAGGAAGTaGGTAGAAGACCGCAATGGTGGCTATGTTCCAGAA +
Preference number: 6 (lower is better)
Translates to: RLVGDHQLHHRK*VEDRNGGYVPE
Trigger: TTCTGGAACATAGCCACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAGCTGGTGATCACCTACCAGACG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 72 bp AACGGAGAAGAAGATGACGATGGCCAAGCAGGCATATaGACTGTAGGCACTGGCGTTGATATCTGGGTGCCG +
Preference number: 6 (lower is better)
Translates to: NGEEDDDGQAGI*TVGTGVDIWVP
Trigger: CGGCACCCAGATATCAACGCCAGTGCCTACAGTGCATATGCCTGCTTGGCCATCGTCATCTTCTTCTCCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS GCA 72 bp GCTCGGTCTATGGCCAACAGCAAGGTCTTCTTCCTTTaGCTGCAGGAATTCAGGGGACAACTCCAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: ARSMANSKVFFL*LQEFRGQLQFS
Trigger: GGAGAACTGGAGTTGTCCCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS CCA 72 bp CAAGGAGAGAAGCACTTTCTGGGCAGGCTCGGTCTATaGCCAACAGCAAGGTCTTCTTCCTTTGCCTCCAGT +
Preference number: 6 (lower is better)
Translates to: QGEKHFLGRLGL*PTARSSSFASS
Trigger: ACTGGAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCCTGCCCAGAAAGTGCTTCTCTCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161606.8
ENSMUST00000162529.8
CDS CAA 72 bp GGCTCGGTCTATGGCCAACAGCAAGGTCTTCTTCCTTaGCCTGCAGGAATTCAGGGGACAACTCCAGTTCTC +
Preference number: 6 (lower is better)
Translates to: GSVYGQQQGLLP*PAGIQGTTPVL
Trigger: GAGAACTGGAGTTGTCCCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACCGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS GCA 72 bp CCAGCAGCACAGTCAGCAGGTAGAAGGACAAGAATATaGCCAGGCAAAAGAGCATCCCACCAACATAGGCCT +
Preference number: 6 (lower is better)
Translates to: PAAQSAGRRTRI*PGKRASHQHRP
Trigger: AGGCCTATGTTGGTGGGATGCTCTTTTGCCTGGGCATATTCTTGTCCTTCTACCTGCTGACTGTGCTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000161042.2
ENSMUST00000161606.8
ENSMUST00000162072.8
ENSMUST00000162379.2
ENSMUST00000162529.8
CDS GCA 72 bp GGTCTATGGCCAACAGCAAGGTCTTCTTCCTTTGCCTaGAGGAATTCAGGGGACAACTCCAGTTCTCCCAAC +
Preference number: 6 (lower is better)
Translates to: GLWPTARSSSFA*RNSGDNSSSPN
Trigger: GTTGGGAGAACTGGAGTTGTCCCCTGAATTCCTGCAGGCAAAGGAAGAAGACCTTGCTGTTGGCCATAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160138.8
CDS CAA 90 bp CACAGGACATCTTGGATGGAGATGACTGAGCAGGGGAAGGCCTTCTaGGAGGTCACCTTGACAATTACCGAGTCCACACCATCAGGAAAC +
Preference number: 6 (lower is better)
Translates to: HRTSWMEMTEQGKAF*EVTLTITESTPSGN
Trigger: GTTTCCTGATGGTGTGGACTCGGTAATTGTCAAGGTGACCTCCAAGAAGGCCTTCCCCTGCTCAGTCATCTCCATCCAAGATGTCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS GCA 72 bp AGGAAGGACCCAAACATGGCAATGGAGGACAGGAAGTaGCAGATATCGTGGTCATCAAAGAAGTCGAGGAGG +
Preference number: 6 (lower is better)
Translates to: RKDPNMAMEDRK*QISWSSKKSRR
Trigger: CCTCCTCGACTTCTTTGATGACCACGATATCTGGCACTTCCTGTCCTCCATTGCCATGTTTGGGTCCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000159033.2
CDS CAA 90 bp TGGATGGAGATGACTGAGCAGGGGAAGGCCTTCTTGGAGGTCACCTaGACAATTACCGAGTCCACACCATCAGGAAACTCGTATTTGAAG +
Preference number: 6 (lower is better)
Translates to: WMEMTEQGKAFLEVT*TITESTPSGNSYLK
Trigger: CTTCAAATACGAGTTTCCTGATGGTGTGGACTCGGTAATTGTCAAGGTGACCTCCAAGAAGGCCTTCCCCTGCTCAGTCATCTCCATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS TCA 72 bp ACGGTTGACTCGGAGCTGGTAAGTGGTATTGACGGGTaGCAGGGTAGACACGTCCACATAGAAAAACTGGAT +
Preference number: 6 (lower is better)
Translates to: TVDSELVSGIDG*QGRHVHIEKLD
Trigger: ATCCAGTTTTTCTATGTGGACGTGTCTACCCTGTCACCCGTCAATACCACTTACCAGCTCCGAGTCAACCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 72 bp CCAGCTGCACCACAGGAAGTGCGTAGAAGACCGCAATaGTGGCTATGTTCCAGAAGTAAATCTGGTACTTTT +
Preference number: 6 (lower is better)
Translates to: PAAPQEVRRRPQ*WLCSRSKSGTF
Trigger: AAAAGTACCAGATTTACTTCTGGAACATAGCCACCATTGCGGTCTTCTACGCACTTCCTGTGGTGCAGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
CDS CAA 90 bp ACACGTTTGTCCTTTCGTGCCAGATCAGCCACACAGAGGTATTGCTaGGTTCGAATGACGTTTTTGTCTGAGTCGATGTCAGTCAGTGTG +
Preference number: 6 (lower is better)
Translates to: TRLSFRARSATQRYC*VRMTFLSESMSVSV
Trigger: CACACTGACTGACATCGACTCAGACAAAAACGTCATTCGAACCAAGCAATACCTCTGTGTGGCTGATCTGGCACGAAAGGACAAACGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000162072.8
CDS CAA 90 bp GTCACCTTGACAATTACCGAGTCCACACCATCAGGAAACTCGTATTaGAAGTACTGGGGCTGGGCTGCAGTGGTATTAAAAGTAAACAGC +
Preference number: 6 (lower is better)
Translates to: VTLTITESTPSGNSY*KYWGWAAVVLKVNS
Trigger: GCTGTTTACTTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGATGGTGTGGACTCGGTAATTGTCAAGGTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS TCA 72 bp CCAGATCAGCCACACAGAGGTATTGCTTGGTTCGAATaGCGTTTTTGTCTGAGTCGATGTCAGTCAGTGTGT +
Preference number: 6 (lower is better)
Translates to: PDQPHRGIAWFE*RFCLSRCQSVC
Trigger: ACACACTGACTGACATCGACTCAGACAAAAACGTCATTCGAACCAAGCAATACCTCTGTGTGGCTGATCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000162072.8
CDS CAA 72 bp TCCTTTCGTGCCAGATCAGCCACACAGAGGTATTGCTaGGTTCGAATGACGTTTTTGTCTGAGTCGATGTCA +
Preference number: 6 (lower is better)
Translates to: SFRARSATQRYC*VRMTFLSESMS
Trigger: TGACATCGACTCAGACAAAAACGTCATTCGAACCAAGCAATACCTCTGTGTGGCTGATCTGGCACGAAAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000162072.8
CDS TCA 72 bp ACAGAGGTATTGCTTGGTTCGAATGACGTTTTTGTCTaGGTCGATGTCAGTCAGTGTGTCGTAGTCATCCTC +
Preference number: 6 (lower is better)
Translates to: TEVLLGSNDVFV*VDVSQCVVVIL
Trigger: GAGGATGACTACGACACACTGACTGACATCGACTCAGACAAAAACGTCATTCGAACCAAGCAATACCTCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000160138.8
ENSMUST00000160618.8
ENSMUST00000162072.8
CDS GCA 72 bp ATCAGGAAACTCGTATTTGAAGTACTGGGGCTGGGCTaGAGTGGTATTAAAAGTAAACAGCTCTCCAGTCCT +
Preference number: 6 (lower is better)
Translates to: IRKLVFEVLGLG*SGIKSKQLSSP
Trigger: AGGACTGGAGAGCTGTTTACTTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CCA 72 bp ACACCATCAGGAAACTCGTATTTGAAGTACTGGGGCTaGGCTGCAGTGGTATTAAAAGTAAACAGCTCTCCA +
Preference number: 6 (lower is better)
Translates to: TPSGNSYLKYWG*AAVVLKVNSSP
Trigger: TGGAGAGCTGTTTACTTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGATGGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8
CDS CAA 72 bp ACAATTACCGAGTCCACACCATCAGGAAACTCGTATTaGAAGTACTGGGGCTGGGCTGCAGTGGTATTAAAA +
Preference number: 6 (lower is better)
Translates to: TITESTPSGNSY*KYWGWAAVVLK
Trigger: TTTTAATACCACTGCAGCCCAGCCCCAGTACTTCAAATACGAGTTTCCTGATGGTGTGGACTCGGTAATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038488.17
ENSMUST00000114573.9
ENSMUST00000162072.8